******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/disco-r.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:16150689-16150809 1.0000 120 chr3L:13502626-13502746 1.0000 120 chrX:16217080-16217200 1.0000 120 chrX:16086250-16086370 1.0000 120 chr3R:15292386-15292506 1.0000 120 chrX:16149081-16149201 1.0000 120 chrX:16105819-16105939 1.0000 120 chr3R:8930321-8930441 1.0000 120 chr2R:9207250-9207370 1.0000 120 chr3L:16714112-16714232 1.0000 120 chr3L:8535105-8535225 1.0000 120 chr3L:3224855-3224975 1.0000 120 chr2R:8947341-8947461 1.0000 120 chr2L:10321307-10321427 1.0000 120 chr3L:22276840-22276960 1.0000 120 chr3R:18988039-18988159 1.0000 120 chrX:10363230-10363350 1.0000 120 chrX:4425228-4425348 1.0000 120 chr2R:13560204-13560324 1.0000 120 chrX:15027134-15027254 1.0000 120 chr2R:15735482-15735602 1.0000 120 chr3R:30802253-30802373 1.0000 120 chr2R:10225074-10225194 1.0000 120 chrX:16570829-16570949 1.0000 120 chr2R:14917142-14917262 1.0000 120 chr3R:21632620-21632740 1.0000 120 chr2L:13882048-13882168 1.0000 120 chr3R:5563597-5563717 1.0000 120 chr3L:21887053-21887173 1.0000 120 chr2L:2494615-2494735 1.0000 120 chr2R:16150174-16150294 1.0000 120 chr2R:16849613-16849733 1.0000 120 chr3L:3433181-3433301 1.0000 120 chr2R:19293038-19293158 1.0000 120 chr3R:29771643-29771763 1.0000 120 chr3R:18315380-18315500 1.0000 120 chr3L:20664090-20664210 1.0000 120 chr2R:20641500-20641620 1.0000 120 chr2R:15919660-15919780 1.0000 120 chrX:16123986-16124106 1.0000 120 chr2R:9291582-9291702 1.0000 120 chr3R:14285188-14285308 1.0000 120 chr3R:13441782-13441902 1.0000 120 chr2R:9116260-9116380 1.0000 120 chr2R:10430860-10430980 1.0000 120 chr2L:15912655-15912775 1.0000 120 chr3R:25122622-25122742 1.0000 120 chr3L:3825522-3825642 1.0000 120 chr3R:21161829-21161949 1.0000 120 chr3R:26099397-26099517 1.0000 120 chr2R:12274370-12274490 1.0000 120 chr3R:16249170-16249290 1.0000 120 chr2R:16264592-16264712 1.0000 120 chrX:5564082-5564202 1.0000 120 chr3R:17707057-17707177 1.0000 120 chr2L:1427869-1427989 1.0000 120 chr2R:7141810-7141930 1.0000 120 chr2R:8336243-8336363 1.0000 120 chrX:10600634-10600754 1.0000 120 chr3L:11355673-11355793 1.0000 120 chrX:4411574-4411694 1.0000 120 chr3R:22794112-22794232 1.0000 120 chrX:17176708-17176828 1.0000 120 chr2L:20822101-20822221 1.0000 120 chrX:9106845-9106965 1.0000 120 chrX:16278309-16278429 1.0000 120 chrX:13632637-13632757 1.0000 120 chr3R:16069440-16069560 1.0000 120 chr3L:10866703-10866823 1.0000 120 chr2R:7663831-7663951 1.0000 120 chrX:8624975-8625095 1.0000 120 chr3R:18399111-18399231 1.0000 120 chr2L:21260958-21261078 1.0000 120 chrX:16158622-16158742 1.0000 120 chr2R:7077003-7077123 1.0000 120 chrX:2443938-2444058 1.0000 120 chr3L:6606053-6606173 1.0000 120 chr3R:6818676-6818796 1.0000 120 chr2R:15351446-15351566 1.0000 120 chr3R:28904315-28904435 1.0000 120 chr3L:3787911-3788031 1.0000 120 chr2R:12705248-12705368 1.0000 120 chr3R:31060306-31060426 1.0000 120 chr2R:7987908-7988028 1.0000 120 chr2L:2133200-2133320 1.0000 120 chr3L:10862051-10862171 1.0000 120 chr3L:4413137-4413257 1.0000 120 chr3L:21433872-21433992 1.0000 120 chr3L:3760617-3760737 1.0000 120 chr3R:11372737-11372857 1.0000 120 chrX:16091464-16091584 1.0000 120 chr3R:15320503-15320623 1.0000 120 chr2L:16251856-16251976 1.0000 120 chr3R:9055271-9055391 1.0000 120 chr3R:26892965-26893085 1.0000 120 chr3R:17043478-17043598 1.0000 120 chr3L:8584229-8584349 1.0000 120 chrX:5745035-5745155 1.0000 120 chr3L:3226212-3226332 1.0000 120 chr2L:18320113-18320233 1.0000 120 chr3R:17617348-17617468 1.0000 120 chrX:4498369-4498489 1.0000 120 chr3R:9677797-9677917 1.0000 120 chr2R:13897559-13897679 1.0000 120 chrX:21117064-21117184 1.0000 120 chr2R:11528116-11528236 1.0000 120 chr2R:21851691-21851811 1.0000 120 chr2L:8692554-8692674 1.0000 120 chr2L:5403659-5403779 1.0000 120 chr2R:17085608-17085728 1.0000 120 chr3R:10140362-10140482 1.0000 120 chr2R:9693538-9693658 1.0000 120 chr2L:7890815-7890935 1.0000 120 chrX:8493557-8493677 1.0000 120 chr3L:16853653-16853773 1.0000 120 chrX:5560632-5560752 1.0000 120 chr2L:858201-858321 1.0000 120 chrX:6110008-6110128 1.0000 120 chr3R:26536262-26536382 1.0000 120 chr3L:16149857-16149977 1.0000 120 chrX:19348953-19349073 1.0000 120 chr2L:2864744-2864864 1.0000 120 chrX:11451201-11451321 1.0000 120 chr2R:24893720-24893840 1.0000 120 chr3L:8689788-8689908 1.0000 120 chr2L:18136664-18136784 1.0000 120 chr2R:9548226-9548346 1.0000 120 chrX:18774880-18775000 1.0000 120 chr2R:11792743-11792863 1.0000 120 chr2R:12742648-12742768 1.0000 120 chr3R:9494252-9494372 1.0000 120 chr3R:10882187-10882307 1.0000 120 chr2R:11469709-11469829 1.0000 120 chr3R:9436609-9436729 1.0000 120 chr2L:14409429-14409549 1.0000 120 chr3L:6264598-6264718 1.0000 120 chr3L:3770959-3771079 1.0000 120 chr2L:6797529-6797649 1.0000 120 chr3L:5926069-5926189 1.0000 120 chr2R:5757585-5757705 1.0000 120 chr2L:13296277-13296397 1.0000 120 chr3L:9446860-9446980 1.0000 120 chr2R:14267801-14267921 1.0000 120 chr2R:11970322-11970442 1.0000 120 chr2L:3477354-3477474 1.0000 120 chr2L:7495990-7496110 1.0000 120 chrX:16091664-16091784 1.0000 120 chr3L:7359885-7360005 1.0000 120 chr3L:7356309-7356429 1.0000 120 chr4:446090-446210 1.0000 120 chr2L:8573045-8573165 1.0000 120 chr3L:21412265-21412385 1.0000 120 chr3R:21270039-21270159 1.0000 120 chr2L:17963232-17963352 1.0000 120 chr2R:21535541-21535661 1.0000 120 chr2L:16690139-16690259 1.0000 120 chr2L:207252-207372 1.0000 120 chr3L:15728179-15728299 1.0000 120 chr2R:7070890-7071010 1.0000 120 chrX:13403979-13404099 1.0000 120 chr2L:7871891-7872011 1.0000 120 chr2R:24943219-24943339 1.0000 120 chr2L:17583196-17583316 1.0000 120 chr2R:14357271-14357391 1.0000 120 chr3L:19618719-19618839 1.0000 120 chr2L:12372586-12372706 1.0000 120 chr2L:1473636-1473756 1.0000 120 chrX:8650877-8650997 1.0000 120 chr2L:11417648-11417768 1.0000 120 chr2L:7494520-7494640 1.0000 120 chr2R:6971486-6971606 1.0000 120 chr3R:29459025-29459145 1.0000 120 chr3R:26536812-26536932 1.0000 120 chr3L:11303973-11304093 1.0000 120 chr3R:20989813-20989933 1.0000 120 chrX:5892209-5892329 1.0000 120 chr3R:8171652-8171772 1.0000 120 chr2R:20601159-20601279 1.0000 120 chr2L:10516820-10516940 1.0000 120 chr2L:1710376-1710496 1.0000 120 chr2L:21658591-21658711 1.0000 120 chr2R:12757493-12757613 1.0000 120 chr3R:5076361-5076481 1.0000 120 chrX:20511570-20511690 1.0000 120 chr2R:23940063-23940183 1.0000 120 chr2R:16202896-16203016 1.0000 120 chrX:17330406-17330526 1.0000 120 chr2L:7828270-7828390 1.0000 120 chr2L:11037856-11037976 1.0000 120 chr3L:12081758-12081878 1.0000 120 chr2L:12366103-12366223 1.0000 120 chr2R:11605157-11605277 1.0000 120 chr3R:10265931-10266051 1.0000 120 chr2L:19867032-19867152 1.0000 120 chr3R:10520677-10520797 1.0000 120 chr3L:16061007-16061127 1.0000 120 chr3R:9065096-9065216 1.0000 120 chr2R:17461229-17461349 1.0000 120 chr2L:19190308-19190428 1.0000 120 chr3R:19180380-19180500 1.0000 120 chr3R:31687923-31688043 1.0000 120 chr2L:22024569-22024689 1.0000 120 chr3R:19847985-19848105 1.0000 120 chr3R:16235665-16235785 1.0000 120 chrX:20394199-20394319 1.0000 120 chr3L:16806192-16806312 1.0000 120 chr2R:20106424-20106544 1.0000 120 chrX:11621973-11622093 1.0000 120 chr3L:8360846-8360966 1.0000 120 chr2R:21295556-21295676 1.0000 120 chr2L:16719690-16719810 1.0000 120 chr2R:7012240-7012360 1.0000 120 chr3R:19831126-19831246 1.0000 120 chr3R:20542409-20542529 1.0000 120 chr3R:19472462-19472582 1.0000 120 chr2L:20759906-20760026 1.0000 120 chr2L:8735648-8735768 1.0000 120 chr2L:18567699-18567819 1.0000 120 chr3R:16991880-16992000 1.0000 120 chrX:6614402-6614522 1.0000 120 chr2R:11427845-11427965 1.0000 120 chr3R:18918266-18918386 1.0000 120 chr3L:19080207-19080327 1.0000 120 chrX:10488073-10488193 1.0000 120 chr3L:22835681-22835801 1.0000 120 chr3R:23226577-23226697 1.0000 120 chr3R:15973555-15973675 1.0000 120 chr3R:26547822-26547942 1.0000 120 chrX:4688173-4688293 1.0000 120 chr2L:7641767-7641887 1.0000 120 chr2L:522858-522978 1.0000 120 chr2R:11632437-11632557 1.0000 120 chr3R:11569164-11569284 1.0000 120 chrX:2588584-2588704 1.0000 120 chr3R:15472898-15473018 1.0000 120 chrX:11657286-11657406 1.0000 120 chr3L:15691350-15691470 1.0000 120 chr2R:9440312-9440432 1.0000 120 chr2R:7466730-7466850 1.0000 120 chrX:4530050-4530170 1.0000 120 chr2R:9971171-9971291 1.0000 120 chr2L:18666057-18666177 1.0000 120 chr3L:7861079-7861199 1.0000 120 chr3R:10675263-10675383 1.0000 120 chr3R:13030670-13030790 1.0000 120 chr3L:6059207-6059327 1.0000 120 chr2R:25085559-25085679 1.0000 120 chr2R:10853443-10853563 1.0000 120 chr3R:16748727-16748847 1.0000 120 chr2R:6501860-6501980 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_disco-r/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/disco-r.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.292 C 0.211 G 0.214 T 0.283 Background letter frequencies (from file dataset with add-one prior applied): A 0.292 C 0.211 G 0.214 T 0.283 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SCGCCAGC MEME-1 width = 8 sites = 34 llr = 293 E-value = 1.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCGCCAGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :2:::8:: pos.-specific C 48:79:2a probability G 6:a3126: matrix T ::::::2: bits 2.2 * * 2.0 * * * 1.8 * * * 1.6 ** * * Relative 1.3 ***** * Entropy 1.1 ****** * (12.4 bits) 0.9 ****** * 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCCAGC consensus C G GC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCCAGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:446090-446210 42 5.67e-06 CACAATGGTT GCGCCAGC GCCTGAAGAA chr3R:14285188-14285308 58 5.67e-06 AGTTTCAACA GCGCCAGC AACAAAACAA chr2R:16202896-16203016 14 1.13e-05 TAGGAAAATA CCGCCAGC GATCAGTGTT chr3R:18399111-18399231 33 1.13e-05 CGTCTGCTCA CCGCCAGC GATCGACTGC chr3L:3825522-3825642 6 1.13e-05 AATGT CCGCCAGC GGTCGTCGCT chr2L:2133200-2133320 2 1.54e-05 A GCGCCGGC AGTTGAATGA chr2R:8336243-8336363 5 1.54e-05 GGAG GCGCCGGC CGATTGTGTC chr2L:6797529-6797649 45 2.10e-05 CAACTTTTTA GCGCCACC TGGCTGAATA chr2R:12274370-12274490 66 2.10e-05 TAAGGTCAGC GCGCCACC TGGCGACGGC chr2R:10430860-10430980 92 2.10e-05 GCAGCAAGAG GCGCCACC ATTGCAGCAG chr3R:11372737-11372857 6 2.68e-05 CAGTG GCGGCAGC AGTCGCAGTC chr3R:17707057-17707177 50 2.68e-05 AGAGAATGGT GCGGCAGC GGGATGGAGG chr2R:25085559-25085679 14 3.43e-05 AAAGTTGAGT GCGCCATC TTTTGCTTGA chr3L:6264598-6264718 7 3.43e-05 TTACTG GCGCCATC TAGGGCCTTA chrX:16105819-16105939 45 3.43e-05 AATATGTGAA GCGCCATC CAGCGGATAG chrX:4530050-4530170 64 4.39e-05 TAGATGTAGA CCGCCACC CAGGGTTGCA chr2R:13897559-13897679 79 4.96e-05 ATTTCGTTCA CCGGCAGC AAGTCGGCAC chr3R:16748727-16748847 26 6.89e-05 CAACTCAGTG CCGCCATC TGACGTAAGA chr2L:2864744-2864864 48 6.89e-05 TTTGCTTTTA GAGCCAGC GAGCAGCCCG chr2L:7828270-7828390 95 7.31e-05 TCGCACAGTA GCGGCGGC TTGCGTCGCC chr2L:18136664-18136784 49 7.31e-05 CACGACAAAA GCGGCGGC AAATATTCGT chr3R:15320503-15320623 30 7.88e-05 AACCACTTCG GCGGCACC ATCCCCAGTT chrX:16217080-16217200 75 8.43e-05 CCGCGAAAGA GCGCCGTC CCGTGCGTGC chrX:8650877-8650997 110 9.19e-05 tcactctctt gcggcatc tct chr2R:6501860-6501980 62 1.04e-04 GGCACTCGGT CCGCCGCC TCGCTTCTCG chrX:6110008-6110128 78 1.04e-04 TCGCTGGCTT CAGCCAGC GGACGCCAGG chr3L:6606053-6606173 33 1.04e-04 CAATTTCCAG CAGCCAGC TTTTGGCAGG chr3R:18988039-18988159 64 1.04e-04 ACGAAAAATA CAGCCAGC TATGAAAATG chr3L:16714112-16714232 40 1.04e-04 AGAGTTTTTC CAGCCAGC GTTTTCCCAA chr2L:8735648-8735768 87 1.30e-04 CACTCATGCA GCGCGAGC GACGAGGCGT chr2L:1710376-1710496 78 1.30e-04 TGTGACCATG GAGCCGGC AACAGTGTGG chr2R:15735482-15735602 51 1.30e-04 acgctgtaca gcgcgagc agcagcaacc chr2R:14357271-14357391 101 1.58e-04 CGGTATTTCG GCGGCGCC ACTTTCTTAA chr2R:14917142-14917262 33 1.58e-04 TACTTTTGCC CCGGCATC ACGGCATTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCCAGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:446090-446210 5.7e-06 41_[+1]_71 chr3R:14285188-14285308 5.7e-06 57_[+1]_55 chr2R:16202896-16203016 1.1e-05 13_[+1]_99 chr3R:18399111-18399231 1.1e-05 32_[+1]_80 chr3L:3825522-3825642 1.1e-05 5_[+1]_107 chr2L:2133200-2133320 1.5e-05 1_[+1]_111 chr2R:8336243-8336363 1.5e-05 4_[+1]_108 chr2L:6797529-6797649 2.1e-05 44_[+1]_68 chr2R:12274370-12274490 2.1e-05 65_[+1]_47 chr2R:10430860-10430980 2.1e-05 91_[+1]_21 chr3R:11372737-11372857 2.7e-05 5_[+1]_107 chr3R:17707057-17707177 2.7e-05 49_[+1]_63 chr2R:25085559-25085679 3.4e-05 13_[+1]_99 chr3L:6264598-6264718 3.4e-05 6_[+1]_106 chrX:16105819-16105939 3.4e-05 44_[+1]_68 chrX:4530050-4530170 4.4e-05 63_[+1]_49 chr2R:13897559-13897679 5e-05 78_[+1]_34 chr3R:16748727-16748847 6.9e-05 25_[+1]_87 chr2L:2864744-2864864 6.9e-05 47_[+1]_65 chr2L:7828270-7828390 7.3e-05 94_[+1]_18 chr2L:18136664-18136784 7.3e-05 48_[+1]_64 chr3R:15320503-15320623 7.9e-05 29_[+1]_83 chrX:16217080-16217200 8.4e-05 74_[+1]_38 chrX:8650877-8650997 9.2e-05 109_[+1]_3 chr2R:6501860-6501980 0.0001 61_[+1]_51 chrX:6110008-6110128 0.0001 77_[+1]_35 chr3L:6606053-6606173 0.0001 32_[+1]_80 chr3R:18988039-18988159 0.0001 63_[+1]_49 chr3L:16714112-16714232 0.0001 39_[+1]_73 chr2L:8735648-8735768 0.00013 86_[+1]_26 chr2L:1710376-1710496 0.00013 77_[+1]_35 chr2R:15735482-15735602 0.00013 50_[+1]_62 chr2R:14357271-14357391 0.00016 100_[+1]_12 chr2R:14917142-14917262 0.00016 32_[+1]_80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCCAGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCGCCAGC width=8 seqs=34 chr4:446090-446210 ( 42) GCGCCAGC 1 chr3R:14285188-14285308 ( 58) GCGCCAGC 1 chr2R:16202896-16203016 ( 14) CCGCCAGC 1 chr3R:18399111-18399231 ( 33) CCGCCAGC 1 chr3L:3825522-3825642 ( 6) CCGCCAGC 1 chr2L:2133200-2133320 ( 2) GCGCCGGC 1 chr2R:8336243-8336363 ( 5) GCGCCGGC 1 chr2L:6797529-6797649 ( 45) GCGCCACC 1 chr2R:12274370-12274490 ( 66) GCGCCACC 1 chr2R:10430860-10430980 ( 92) GCGCCACC 1 chr3R:11372737-11372857 ( 6) GCGGCAGC 1 chr3R:17707057-17707177 ( 50) GCGGCAGC 1 chr2R:25085559-25085679 ( 14) GCGCCATC 1 chr3L:6264598-6264718 ( 7) GCGCCATC 1 chrX:16105819-16105939 ( 45) GCGCCATC 1 chrX:4530050-4530170 ( 64) CCGCCACC 1 chr2R:13897559-13897679 ( 79) CCGGCAGC 1 chr3R:16748727-16748847 ( 26) CCGCCATC 1 chr2L:2864744-2864864 ( 48) GAGCCAGC 1 chr2L:7828270-7828390 ( 95) GCGGCGGC 1 chr2L:18136664-18136784 ( 49) GCGGCGGC 1 chr3R:15320503-15320623 ( 30) GCGGCACC 1 chrX:16217080-16217200 ( 75) GCGCCGTC 1 chrX:8650877-8650997 ( 110) GCGGCATC 1 chr2R:6501860-6501980 ( 62) CCGCCGCC 1 chrX:6110008-6110128 ( 78) CAGCCAGC 1 chr3L:6606053-6606173 ( 33) CAGCCAGC 1 chr3R:18988039-18988159 ( 64) CAGCCAGC 1 chr3L:16714112-16714232 ( 40) CAGCCAGC 1 chr2L:8735648-8735768 ( 87) GCGCGAGC 1 chr2L:1710376-1710496 ( 78) GAGCCGGC 1 chr2R:15735482-15735602 ( 51) GCGCGAGC 1 chr2R:14357271-14357391 ( 101) GCGGCGCC 1 chr2R:14917142-14917262 ( 33) CCGGCATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCCAGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 1.1e+001 -1173 74 160 -1173 -72 196 -1173 -1173 -1173 -1173 222 -1173 -1173 180 31 -1173 -1173 216 -186 -1173 139 -1173 14 -1173 -1173 -4 146 -46 -1173 224 -1173 -1173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCCAGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 1.1e+001 0.000000 0.352941 0.647059 0.000000 0.176471 0.823529 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.735294 0.264706 0.000000 0.000000 0.941176 0.058824 0.000000 0.764706 0.000000 0.235294 0.000000 0.000000 0.205882 0.588235 0.205882 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCCAGC MEME-1 regular expression -------------------------------------------------------------------------------- [GC]CG[CG]C[AG][GCT]C -------------------------------------------------------------------------------- Time 7.50 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCTCGC MEME-2 width = 8 sites = 16 llr = 157 E-value = 8.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCTCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 19:9:a:a probability G :1:1::8: matrix T 9:a:a:3: bits 2.2 * * 2.0 * * 1.8 ***** * 1.6 ***** * Relative 1.3 ******** Entropy 1.1 ******** (14.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCGC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:9436609-9436729 105 9.61e-06 TCTCCGGATA tctctcgc tctcgctt chr2R:9548226-9548346 40 9.61e-06 tctctctctc tctctcgc tctttttctc chrX:6110008-6110128 45 9.61e-06 ATCGGCGGCG TCTCTCGC GAGACACTGC chr2R:11528116-11528236 77 9.61e-06 GCCAGAGCGc tctctcgc tcgctccctc chr3L:3226212-3226332 87 9.61e-06 TCTCCATCGC TCTCTCGC TTCCACTCTC chr3R:25122622-25122742 95 9.61e-06 GCTCGTCTGC TCTCTCGC GGTTCGGTAC chr2R:20106424-20106544 52 2.23e-05 TGACAGAGAG TCTCTCTC GGCGGCGATC chrX:8650877-8650997 92 2.23e-05 tcgctctctc tctctctc tcactctctt chrX:16091664-16091784 63 2.23e-05 tccctatctc tctctctc tgtctGGTAC chrX:16150689-16150809 17 2.23e-05 tcgctcgctc tctctctc tctctctcac chr2L:7828270-7828390 11 2.95e-05 TGTCTCTGGC CCTCTCGC TCTTTCCAAT chrX:4425228-4425348 104 2.95e-05 CATTTGCACG CCTCTCGC CATCTGCCG chr3L:22835681-22835801 86 4.90e-05 CAGGCACTCG TGTCTCGC GACTCACATG chr2L:8692554-8692674 106 4.90e-05 CGCATAAAAC TGTCTCGC CCCACAC chr2L:18320113-18320233 29 4.90e-05 TCAGTCGTTC TCTGTCGC TCTTGGATTG chr3L:3825522-3825642 24 4.90e-05 GGTCGTCGCT TCTGTCGC AGCCGTTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:9436609-9436729 9.6e-06 104_[+2]_8 chr2R:9548226-9548346 9.6e-06 39_[+2]_73 chrX:6110008-6110128 9.6e-06 44_[+2]_68 chr2R:11528116-11528236 9.6e-06 76_[+2]_36 chr3L:3226212-3226332 9.6e-06 86_[+2]_26 chr3R:25122622-25122742 9.6e-06 94_[+2]_18 chr2R:20106424-20106544 2.2e-05 51_[+2]_61 chrX:8650877-8650997 2.2e-05 91_[+2]_21 chrX:16091664-16091784 2.2e-05 62_[+2]_50 chrX:16150689-16150809 2.2e-05 16_[+2]_96 chr2L:7828270-7828390 2.9e-05 10_[+2]_102 chrX:4425228-4425348 2.9e-05 103_[+2]_9 chr3L:22835681-22835801 4.9e-05 85_[+2]_27 chr2L:8692554-8692674 4.9e-05 105_[+2]_7 chr2L:18320113-18320233 4.9e-05 28_[+2]_84 chr3L:3825522-3825642 4.9e-05 23_[+2]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCTCGC width=8 seqs=16 chr3R:9436609-9436729 ( 105) TCTCTCGC 1 chr2R:9548226-9548346 ( 40) TCTCTCGC 1 chrX:6110008-6110128 ( 45) TCTCTCGC 1 chr2R:11528116-11528236 ( 77) TCTCTCGC 1 chr3L:3226212-3226332 ( 87) TCTCTCGC 1 chr3R:25122622-25122742 ( 95) TCTCTCGC 1 chr2R:20106424-20106544 ( 52) TCTCTCTC 1 chrX:8650877-8650997 ( 92) TCTCTCTC 1 chrX:16091664-16091784 ( 63) TCTCTCTC 1 chrX:16150689-16150809 ( 17) TCTCTCTC 1 chr2L:7828270-7828390 ( 11) CCTCTCGC 1 chrX:4425228-4425348 ( 104) CCTCTCGC 1 chr3L:22835681-22835801 ( 86) TGTCTCGC 1 chr2L:8692554-8692674 ( 106) TGTCTCGC 1 chr2L:18320113-18320233 ( 29) TCTGTCGC 1 chr3L:3825522-3825642 ( 24) TCTGTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1076 E= 8.2e+002 -1064 -76 -1064 163 -1064 205 -77 -1064 -1064 -1064 -1064 182 -1064 205 -77 -1064 -1064 -1064 -1064 182 -1064 224 -1064 -1064 -1064 -1064 181 -18 -1064 224 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 8.2e+002 0.000000 0.125000 0.000000 0.875000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCGC MEME-2 regular expression -------------------------------------------------------------------------------- TCTCTC[GT]C -------------------------------------------------------------------------------- Time 13.79 secs. ******************************************************************************** ******************************************************************************** MOTIF GCACWCRC MEME-3 width = 8 sites = 12 llr = 124 E-value = 3.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACWCRC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a:6:3: pos.-specific C :a:a:a:a probability G a:::::7: matrix T ::::4::: bits 2.2 ** * * * 2.0 ** * * * 1.8 **** * * 1.6 **** * * Relative 1.3 **** * * Entropy 1.1 **** *** (15.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCACACGC consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACWCRC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:15728179-15728299 81 7.74e-06 CTTGCGTCTG GCACACGC ACACAACTGC chrX:5560632-5560752 113 7.74e-06 TGCTCTTCTC GCACACGC chrX:16091464-16091584 111 7.74e-06 ACAAACAAGT GCACACGC AC chr3R:18315380-18315500 44 7.74e-06 TTCAGTGAAT GCACACGC CACACCGGAG chr3R:9494252-9494372 47 1.52e-05 TCTACAGTAG GCACTCGC TGACACAGAG chrX:2443938-2444058 75 1.52e-05 TATGGTAGGT GCACTCGC TAAAACATGG chr3R:18399111-18399231 62 1.52e-05 TTTAAATTTG GCACTCGC TGCCGCGACT chr3R:5563597-5563717 77 1.52e-05 TGCTGGTTCT GCACTCGC CGAGTGGCAG chr2L:8735648-8735768 50 2.58e-05 ACTCACACAC GCACACAC GTAGGCGACG chr2R:13897559-13897679 93 2.58e-05 CAGCAAGTCG GCACACAC AGCGGATACG chr3L:13502626-13502746 22 2.58e-05 CAGCCAATGT GCACACAC CACTAACGGC chr2L:14409429-14409549 33 3.60e-05 TTACGCTTTC GCACTCAC AACACAACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACWCRC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:15728179-15728299 7.7e-06 80_[+3]_32 chrX:5560632-5560752 7.7e-06 112_[+3] chrX:16091464-16091584 7.7e-06 110_[+3]_2 chr3R:18315380-18315500 7.7e-06 43_[+3]_69 chr3R:9494252-9494372 1.5e-05 46_[+3]_66 chrX:2443938-2444058 1.5e-05 74_[+3]_38 chr3R:18399111-18399231 1.5e-05 61_[+3]_51 chr3R:5563597-5563717 1.5e-05 76_[+3]_36 chr2L:8735648-8735768 2.6e-05 49_[+3]_63 chr2R:13897559-13897679 2.6e-05 92_[+3]_20 chr3L:13502626-13502746 2.6e-05 21_[+3]_91 chr2L:14409429-14409549 3.6e-05 32_[+3]_80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACWCRC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACWCRC width=8 seqs=12 chr3L:15728179-15728299 ( 81) GCACACGC 1 chrX:5560632-5560752 ( 113) GCACACGC 1 chrX:16091464-16091584 ( 111) GCACACGC 1 chr3R:18315380-18315500 ( 44) GCACACGC 1 chr3R:9494252-9494372 ( 47) GCACTCGC 1 chrX:2443938-2444058 ( 75) GCACTCGC 1 chr3R:18399111-18399231 ( 62) GCACTCGC 1 chr3R:5563597-5563717 ( 77) GCACTCGC 1 chr2L:8735648-8735768 ( 50) GCACACAC 1 chr2R:13897559-13897679 ( 93) GCACACAC 1 chr3L:13502626-13502746 ( 22) GCACACAC 1 chr2L:14409429-14409549 ( 33) GCACTCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACWCRC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3003 E= 3.0e+003 -1023 -1023 222 -1023 -1023 224 -1023 -1023 178 -1023 -1023 -1023 -1023 224 -1023 -1023 100 -1023 -1023 56 -1023 224 -1023 -1023 19 -1023 164 -1023 -1023 224 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACWCRC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 3.0e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.583333 0.000000 0.000000 0.416667 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACWCRC MEME-3 regular expression -------------------------------------------------------------------------------- GCAC[AT]C[GA]C -------------------------------------------------------------------------------- Time 20.02 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCGCGC MEME-4 width = 8 sites = 2 llr = 25 E-value = 4.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:a:a:a probability G ::a:a:a: matrix T :::::::: bits 2.2 ******** 2.0 ******** 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGCGCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8650877-8650997 27 4.10e-06 CGGCTCTCTA CCGCGCGC CAGAGTGAGA chr3R:21270039-21270159 104 4.10e-06 GTTGGCAGAC CCGCGCGC TGTATTACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8650877-8650997 4.1e-06 26_[+4]_86 chr3R:21270039-21270159 4.1e-06 103_[+4]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCGCGC width=8 seqs=2 chrX:8650877-8650997 ( 27) CCGCGCGC 1 chr3R:21270039-21270159 ( 104) CCGCGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 4.6e+004 -765 224 -765 -765 -765 224 -765 -765 -765 -765 222 -765 -765 224 -765 -765 -765 -765 222 -765 -765 224 -765 -765 -765 -765 222 -765 -765 224 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.6e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-4 regular expression -------------------------------------------------------------------------------- CCGCGCGC -------------------------------------------------------------------------------- Time 26.23 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGCTGC MEME-5 width = 8 sites = 2 llr = 24 E-value = 3.8e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C :a::a::a probability G a::a::a: matrix T :::::a:: bits 2.2 ** ** ** 2.0 ** ** ** 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCTGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5926069-5926189 4 7.61e-06 GGT GCAGCTGC ATATTCAAAT chr2R:8336243-8336363 55 7.61e-06 TGCGGTTGTC GCAGCTGC CGCCTGTTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5926069-5926189 7.6e-06 3_[+5]_109 chr2R:8336243-8336363 7.6e-06 54_[+5]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGCTGC width=8 seqs=2 chr3L:5926069-5926189 ( 4) GCAGCTGC 1 chr2R:8336243-8336363 ( 55) GCAGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 3.8e+005 -765 -765 222 -765 -765 224 -765 -765 177 -765 -765 -765 -765 -765 222 -765 -765 224 -765 -765 -765 -765 -765 181 -765 -765 222 -765 -765 224 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.8e+005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-5 regular expression -------------------------------------------------------------------------------- GCAGCTGC -------------------------------------------------------------------------------- Time 32.65 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16150689-16150809 5.18e-03 14_[+2(2.23e-05)]_[+2(2.23e-05)]_28_\ [+2(2.23e-05)]_54 chr3L:13502626-13502746 1.60e-01 21_[+3(2.58e-05)]_91 chrX:16217080-16217200 1.17e-03 74_[+1(8.43e-05)]_38 chrX:16086250-16086370 9.96e-01 120 chr3R:15292386-15292506 3.33e-01 120 chrX:16149081-16149201 1.98e-02 28_[+3(2.58e-05)]_58_[+3(2.58e-05)]_\ 18 chrX:16105819-16105939 6.14e-02 44_[+1(3.43e-05)]_60_[+1(6.89e-05)] chr3R:8930321-8930441 9.72e-01 120 chr2R:9207250-9207370 9.44e-01 120 chr3L:16714112-16714232 4.33e-02 120 chr3L:8535105-8535225 1.82e-01 120 chr3L:3224855-3224975 5.78e-01 120 chr2R:8947341-8947461 4.54e-03 72_[+5(2.61e-05)]_40 chr2L:10321307-10321427 7.83e-01 120 chr3L:22276840-22276960 1.75e-02 120 chr3R:18988039-18988159 2.37e-01 120 chrX:10363230-10363350 9.98e-01 120 chrX:4425228-4425348 5.80e-03 103_[+2(2.95e-05)]_9 chr2R:13560204-13560324 4.39e-01 120 chrX:15027134-15027254 9.70e-01 120 chr2R:15735482-15735602 3.76e-04 56_[+5(4.53e-05)]_19_[+5(4.53e-05)]_\ 1_[+5(4.53e-05)]_20 chr3R:30802253-30802373 4.02e-01 120 chr2R:10225074-10225194 3.93e-01 120 chrX:16570829-16570949 9.66e-01 120 chr2R:14917142-14917262 1.26e-01 120 chr3R:21632620-21632740 3.02e-01 120 chr2L:13882048-13882168 9.54e-02 120 chr3R:5563597-5563717 2.33e-03 76_[+3(1.52e-05)]_36 chr3L:21887053-21887173 9.51e-01 120 chr2L:2494615-2494735 3.03e-01 120 chr2R:16150174-16150294 3.86e-01 120 chr2R:16849613-16849733 7.74e-01 120 chr3L:3433181-3433301 1.97e-01 120 chr2R:19293038-19293158 6.64e-01 120 chr3R:29771643-29771763 3.91e-01 120 chr3R:18315380-18315500 8.67e-03 43_[+3(7.74e-06)]_69 chr3L:20664090-20664210 9.93e-01 120 chr2R:20641500-20641620 4.48e-02 120 chr2R:15919660-15919780 3.31e-02 120 chrX:16123986-16124106 5.37e-02 88_[+5(4.53e-05)]_24 chr2R:9291582-9291702 1.00e+00 120 chr3R:14285188-14285308 1.69e-03 2_[+5(2.61e-05)]_47_[+1(5.67e-06)]_\ 55 chr3R:13441782-13441902 2.86e-01 120 chr2R:9116260-9116380 5.83e-02 120 chr2R:10430860-10430980 4.98e-03 25_[+1(4.39e-05)]_39_[+5(4.53e-05)]_\ 11_[+1(2.10e-05)]_21 chr2L:15912655-15912775 1.44e-01 120 chr3R:25122622-25122742 8.44e-03 94_[+2(9.61e-06)]_18 chr3L:3825522-3825642 2.34e-06 5_[+1(1.13e-05)]_10_[+2(4.90e-05)]_\ 41_[+5(4.53e-05)]_4_[+5(4.53e-05)]_1_[+5(4.53e-05)]_19 chr3R:21161829-21161949 7.21e-01 120 chr3R:26099397-26099517 9.98e-01 120 chr2R:12274370-12274490 2.60e-05 5_[+5(4.53e-05)]_52_[+1(2.10e-05)]_\ 47 chr3R:16249170-16249290 9.92e-01 120 chr2R:16264592-16264712 2.34e-01 120 chrX:5564082-5564202 9.76e-01 120 chr3R:17707057-17707177 8.12e-03 49_[+1(2.68e-05)]_63 chr2L:1427869-1427989 8.31e-01 120 chr2R:7141810-7141930 9.42e-01 120 chr2R:8336243-8336363 5.86e-05 4_[+1(1.54e-05)]_42_[+5(7.61e-06)]_\ 8_[+1(6.89e-05)]_42 chrX:10600634-10600754 8.70e-01 120 chr3L:11355673-11355793 2.05e-01 120 chrX:4411574-4411694 7.51e-02 120 chr3R:22794112-22794232 1.00e+00 120 chrX:17176708-17176828 9.81e-01 120 chr2L:20822101-20822221 4.52e-02 120 chrX:9106845-9106965 9.91e-01 120 chrX:16278309-16278429 1.19e-01 120 chrX:13632637-13632757 4.16e-01 120 chr3R:16069440-16069560 8.63e-01 120 chr3L:10866703-10866823 4.34e-01 120 chr2R:7663831-7663951 8.70e-01 120 chrX:8624975-8625095 1.10e-02 120 chr3R:18399111-18399231 1.04e-05 32_[+1(1.13e-05)]_21_[+3(1.52e-05)]_\ 51 chr2L:21260958-21261078 1.97e-01 120 chrX:16158622-16158742 9.03e-01 120 chr2R:7077003-7077123 9.82e-01 120 chrX:2443938-2444058 4.42e-03 74_[+3(1.52e-05)]_38 chr3L:6606053-6606173 8.97e-02 120 chr3R:6818676-6818796 8.90e-01 120 chr2R:15351446-15351566 6.97e-01 120 chr3R:28904315-28904435 1.00e+00 120 chr3L:3787911-3788031 3.56e-01 120 chr2R:12705248-12705368 5.02e-01 120 chr3R:31060306-31060426 3.05e-01 120 chr2R:7987908-7988028 1.38e-01 120 chr2L:2133200-2133320 7.32e-02 1_[+1(1.54e-05)]_111 chr3L:10862051-10862171 5.09e-01 120 chr3L:4413137-4413257 5.21e-02 120 chr3L:21433872-21433992 9.10e-01 120 chr3L:3760617-3760737 4.31e-01 120 chr3R:11372737-11372857 7.34e-04 5_[+1(2.68e-05)]_107 chrX:16091464-16091584 1.47e-02 110_[+3(7.74e-06)]_2 chr3R:15320503-15320623 9.42e-02 29_[+1(7.88e-05)]_83 chr2L:16251856-16251976 9.40e-02 35_[+3(8.39e-05)]_77 chr3R:9055271-9055391 4.19e-01 120 chr3R:26892965-26893085 1.11e-01 120 chr3R:17043478-17043598 9.94e-01 120 chr3L:8584229-8584349 5.09e-01 120 chrX:5745035-5745155 3.48e-02 120 chr3L:3226212-3226332 9.99e-03 64_[+2(2.23e-05)]_14_[+2(9.61e-06)]_\ 26 chr2L:18320113-18320233 1.56e-01 28_[+2(4.90e-05)]_84 chr3R:17617348-17617468 9.97e-01 120 chrX:4498369-4498489 9.95e-01 120 chr3R:9677797-9677917 9.88e-01 120 chr2R:13897559-13897679 5.77e-03 78_[+1(4.96e-05)]_6_[+3(2.58e-05)]_\ 20 chrX:21117064-21117184 2.22e-01 120 chr2R:11528116-11528236 6.82e-04 76_[+2(9.61e-06)]_6_[+2(2.95e-05)]_\ 22 chr2R:21851691-21851811 1.00e+00 120 chr2L:8692554-8692674 1.98e-01 105_[+2(4.90e-05)]_7 chr2L:5403659-5403779 1.45e-03 120 chr2R:17085608-17085728 9.84e-01 120 chr3R:10140362-10140482 3.23e-01 120 chr2R:9693538-9693658 9.96e-01 120 chr2L:7890815-7890935 7.51e-01 120 chrX:8493557-8493677 9.81e-01 120 chr3L:16853653-16853773 8.98e-01 120 chrX:5560632-5560752 9.23e-04 112_[+3(7.74e-06)] chr2L:858201-858321 9.24e-01 120 chrX:6110008-6110128 6.74e-04 44_[+2(9.61e-06)]_68 chr3R:26536262-26536382 1.87e-01 120 chr3L:16149857-16149977 1.00e+00 120 chrX:19348953-19349073 1.00e+00 120 chr2L:2864744-2864864 4.81e-02 47_[+1(6.89e-05)]_65 chrX:11451201-11451321 4.50e-01 120 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chrX:16091664-16091784 2.22e-02 26_[+2(2.23e-05)]_2_[+2(5.85e-05)]_\ 14_[+2(2.23e-05)]_54 chr3L:7359885-7360005 2.43e-01 120 chr3L:7356309-7356429 6.23e-01 120 chr4:446090-446210 5.03e-02 41_[+1(5.67e-06)]_71 chr2L:8573045-8573165 7.47e-01 120 chr3L:21412265-21412385 9.70e-01 120 chr3R:21270039-21270159 2.81e-03 103_[+4(4.10e-06)]_9 chr2L:17963232-17963352 1.34e-01 120 chr2R:21535541-21535661 9.91e-01 120 chr2L:16690139-16690259 9.97e-01 120 chr2L:207252-207372 9.55e-01 120 chr3L:15728179-15728299 2.16e-02 80_[+3(7.74e-06)]_12_[+3(6.52e-05)]_\ 12 chr2R:7070890-7071010 9.19e-01 120 chrX:13403979-13404099 8.71e-01 120 chr2L:7871891-7872011 1.00e+00 120 chr2R:24943219-24943339 8.08e-01 120 chr2L:17583196-17583316 7.97e-01 120 chr2R:14357271-14357391 2.07e-01 120 chr3L:19618719-19618839 9.99e-01 120 chr2L:12372586-12372706 9.03e-01 120 chr2L:1473636-1473756 9.91e-01 120 chrX:8650877-8650997 5.56e-06 26_[+4(4.10e-06)]_51_[+2(2.23e-05)]_\ [+2(2.23e-05)]_8_[+1(9.19e-05)]_3 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chr2R:11427845-11427965 9.04e-01 120 chr3R:18918266-18918386 5.45e-01 120 chr3L:19080207-19080327 1.00e+00 120 chrX:10488073-10488193 9.96e-01 120 chr3L:22835681-22835801 3.28e-03 85_[+2(4.90e-05)]_27 chr3R:23226577-23226697 6.36e-01 120 chr3R:15973555-15973675 6.98e-01 120 chr3R:26547822-26547942 1.00e+00 120 chrX:4688173-4688293 5.99e-01 120 chr2L:7641767-7641887 7.85e-01 120 chr2L:522858-522978 9.99e-01 120 chr2R:11632437-11632557 2.48e-01 120 chr3R:11569164-11569284 3.52e-01 120 chrX:2588584-2588704 7.96e-03 120 chr3R:15472898-15473018 8.71e-01 120 chrX:11657286-11657406 1.00e+00 120 chr3L:15691350-15691470 1.00e+00 120 chr2R:9440312-9440432 8.61e-01 120 chr2R:7466730-7466850 1.88e-01 120 chrX:4530050-4530170 1.49e-02 63_[+1(4.39e-05)]_49 chr2R:9971171-9971291 7.46e-01 120 chr2L:18666057-18666177 4.19e-01 120 chr3L:7861079-7861199 9.98e-01 120 chr3R:10675263-10675383 4.46e-01 120 chr3R:13030670-13030790 9.99e-01 120 chr3L:6059207-6059327 6.60e-01 120 chr2R:25085559-25085679 1.39e-01 13_[+1(3.43e-05)]_99 chr2R:10853443-10853563 1.00e+00 120 chr3R:16748727-16748847 9.00e-02 25_[+1(6.89e-05)]_87 chr2R:6501860-6501980 1.19e-03 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************