******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/dac.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:20295974-20296094 1.0000 120 chr2R:15808759-15808879 1.0000 120 chr3L:1392674-1392794 1.0000 120 chr2L:20943255-20943375 1.0000 120 chr3L:19329638-19329758 1.0000 120 chr3R:29982183-29982303 1.0000 120 chr2L:712398-712518 1.0000 120 chr2L:19307815-19307935 1.0000 120 chr2R:7734123-7734243 1.0000 120 chr2R:13769532-13769652 1.0000 120 chr3R:26128798-26128918 1.0000 120 chr2R:13768471-13768591 1.0000 120 chrX:1979115-1979235 1.0000 120 chr2R:7905161-7905281 1.0000 120 chr2L:3881284-3881404 1.0000 120 chrX:11531380-11531500 1.0000 120 chrX:6303286-6303406 1.0000 120 chr3L:1200527-1200647 1.0000 120 chr3R:11606853-11606973 1.0000 120 chr2L:1156866-1156986 1.0000 120 chrX:724608-724728 1.0000 120 chrX:10953419-10953539 1.0000 120 chr3R:23365129-23365249 1.0000 120 chrX:4982583-4982703 1.0000 120 chr2L:3731145-3731265 1.0000 120 chr2L:16407521-16407641 1.0000 120 chr3R:6215039-6215159 1.0000 120 chr3L:3656961-3657081 1.0000 120 chr2L:9141092-9141212 1.0000 120 chr2L:20716890-20717010 1.0000 120 chr2L:3371501-3371621 1.0000 120 chr3R:24204155-24204275 1.0000 120 chr2L:18724990-18725110 1.0000 120 chr3L:21118773-21118893 1.0000 120 chr2L:5495102-5495222 1.0000 120 chrX:1988850-1988970 1.0000 120 chr3L:1905407-1905527 1.0000 120 chrX:1090603-1090723 1.0000 120 chr3R:14280427-14280547 1.0000 120 chr2L:18493330-18493450 1.0000 120 chr2L:3436515-3436635 1.0000 120 chr3R:30312646-30312766 1.0000 120 chr3R:23392385-23392505 1.0000 120 chr3L:12060256-12060376 1.0000 120 chr3L:2145164-2145284 1.0000 120 chr2R:14111919-14112039 1.0000 120 chr3R:30567412-30567532 1.0000 120 chr3L:8422425-8422545 1.0000 120 chr3R:24219246-24219366 1.0000 120 chr3L:21229964-21230084 1.0000 120 chrX:13911341-13911461 1.0000 120 chr3R:6214355-6214475 1.0000 120 chr3L:741881-742001 1.0000 120 chr2R:12413262-12413382 1.0000 120 chr2L:18751370-18751490 1.0000 120 chr2R:23761527-23761647 1.0000 120 chr2L:18331757-18331877 1.0000 120 chr2L:604214-604334 1.0000 120 chr2L:3482173-3482293 1.0000 120 chr3L:8384122-8384242 1.0000 120 chr3L:10796012-10796132 1.0000 120 chr3R:15410598-15410718 1.0000 120 chrX:4151129-4151249 1.0000 120 chr3L:12072492-12072612 1.0000 120 chr3L:10444098-10444218 1.0000 120 chr3R:29450487-29450607 1.0000 120 chr3R:29847238-29847358 1.0000 120 chrX:11736562-11736682 1.0000 120 chr3L:10376853-10376973 1.0000 120 chr2L:15321497-15321617 1.0000 120 chrX:3454845-3454965 1.0000 120 chr3L:21716145-21716265 1.0000 120 chr2R:16742166-16742286 1.0000 120 chr3R:8107084-8107204 1.0000 120 chrX:14120349-14120469 1.0000 120 chr3R:7330844-7330964 1.0000 120 chr3L:1844742-1844862 1.0000 120 chr3R:8918960-8919080 1.0000 120 chr3R:17430578-17430698 1.0000 120 chr2L:17397551-17397671 1.0000 120 chr2L:1558094-1558214 1.0000 120 chr2R:23000785-23000905 1.0000 120 chr3L:10398758-10398878 1.0000 120 chrX:4264445-4264565 1.0000 120 chr3R:31709272-31709392 1.0000 120 chrX:16373655-16373775 1.0000 120 chr2L:2185580-2185700 1.0000 120 chr2R:22148075-22148195 1.0000 120 chr2R:11315512-11315632 1.0000 120 chr2R:22727133-22727253 1.0000 120 chrX:8581468-8581588 1.0000 120 chr3R:10028603-10028723 1.0000 120 chrX:4965776-4965896 1.0000 120 chr3R:18487956-18488076 1.0000 120 chr2R:8353405-8353525 1.0000 120 chr3L:713949-714069 1.0000 120 chr2L:1926028-1926148 1.0000 120 chrX:4999155-4999275 1.0000 120 chr3L:8782186-8782306 1.0000 120 chr2L:18752155-18752275 1.0000 120 chr2R:23031009-23031129 1.0000 120 chr3R:24891043-24891163 1.0000 120 chr2R:15737232-15737352 1.0000 120 chr2L:20340785-20340905 1.0000 120 chr3R:13831174-13831294 1.0000 120 chr3L:11536879-11536999 1.0000 120 chr2R:10847473-10847593 1.0000 120 chrX:14812408-14812528 1.0000 120 chr3R:10154423-10154543 1.0000 120 chr2R:20024397-20024517 1.0000 120 chr2L:19899641-19899761 1.0000 120 chr2R:7282259-7282379 1.0000 120 chr3L:11448468-11448588 1.0000 120 chr2L:5090448-5090568 1.0000 120 chrX:19290043-19290163 1.0000 120 chr3R:8470701-8470821 1.0000 120 chr3L:5609608-5609728 1.0000 120 chrX:1080856-1080976 1.0000 120 chr2R:18353552-18353672 1.0000 120 chr3R:23416768-23416888 1.0000 120 chrX:5977248-5977368 1.0000 120 chr3R:14486670-14486790 1.0000 120 chrX:1119320-1119440 1.0000 120 chr3R:21688049-21688169 1.0000 120 chr3R:9420935-9421055 1.0000 120 chr3L:4393003-4393123 1.0000 120 chr3R:23395798-23395918 1.0000 120 chr2L:16804353-16804473 1.0000 120 chrX:715513-715633 1.0000 120 chr2L:664432-664552 1.0000 120 chr2L:18005649-18005769 1.0000 120 chr2L:7918913-7919033 1.0000 120 chrX:10959991-10960111 1.0000 120 chr2R:7173140-7173260 1.0000 120 chr3R:24910243-24910363 1.0000 120 chr3R:31243240-31243360 1.0000 120 chr2L:15343514-15343634 1.0000 120 chr3L:15252577-15252697 1.0000 120 chr3R:22150004-22150124 1.0000 120 chr3L:6331844-6331964 1.0000 120 chrX:12766458-12766578 1.0000 120 chr3R:21703508-21703628 1.0000 120 chr2R:7744712-7744832 1.0000 120 chr3R:13857432-13857552 1.0000 120 chrX:11653143-11653263 1.0000 120 chr3R:14720273-14720393 1.0000 120 chr2L:20370304-20370424 1.0000 120 chr2L:2478428-2478548 1.0000 120 chr3L:8319228-8319348 1.0000 120 chr3R:16336453-16336573 1.0000 120 chrX:3739332-3739452 1.0000 120 chr3R:19264956-19265076 1.0000 120 chr3L:756537-756657 1.0000 120 chr2L:7938643-7938763 1.0000 120 chr2L:243997-244117 1.0000 120 chr3R:23390891-23391011 1.0000 120 chr2R:18901742-18901862 1.0000 120 chr2L:7513798-7513918 1.0000 120 chrX:10933975-10934095 1.0000 120 chrX:4959049-4959169 1.0000 120 chrX:20130623-20130743 1.0000 120 chr3R:30344752-30344872 1.0000 120 chrX:7179381-7179501 1.0000 120 chr3R:31320001-31320121 1.0000 120 chr3L:16310093-16310213 1.0000 120 chr2L:9746845-9746965 1.0000 120 chr2R:20055475-20055595 1.0000 120 chrX:18542045-18542165 1.0000 120 chr3L:2582438-2582558 1.0000 120 chr3R:31314617-31314737 1.0000 120 chrX:6333494-6333614 1.0000 120 chrX:3453525-3453645 1.0000 120 chrX:16873149-16873269 1.0000 120 chrX:6357146-6357266 1.0000 120 chrX:8839471-8839591 1.0000 120 chrX:5608625-5608745 1.0000 120 chr3R:26019322-26019442 1.0000 120 chrX:3436341-3436461 1.0000 120 chrX:13909246-13909366 1.0000 120 chr3R:15409244-15409364 1.0000 120 chr3R:16763713-16763833 1.0000 120 chr3L:10709232-10709352 1.0000 120 chr3L:9745490-9745610 1.0000 120 chr3R:31482221-31482341 1.0000 120 chrX:9738624-9738744 1.0000 120 chr2L:16804569-16804689 1.0000 120 chr3R:28850830-28850950 1.0000 120 chr2L:20017047-20017167 1.0000 120 chr3R:21733159-21733279 1.0000 120 chr3L:787768-787888 1.0000 120 chr3R:29757863-29757983 1.0000 120 chrX:9068123-9068243 1.0000 120 chrX:5002896-5003016 1.0000 120 chr2R:18300953-18301073 1.0000 120 chr3R:24264214-24264334 1.0000 120 chr2R:18244018-18244138 1.0000 120 chr3R:8233994-8234114 1.0000 120 chr2R:22119861-22119981 1.0000 120 chr3L:5626619-5626739 1.0000 120 chr2L:9505878-9505998 1.0000 120 chr3L:15708679-15708799 1.0000 120 chr3R:15927335-15927455 1.0000 120 chr3R:6229246-6229366 1.0000 120 chr3R:31462331-31462451 1.0000 120 chr3R:8038015-8038135 1.0000 120 chrX:17914589-17914709 1.0000 120 chr3L:10913325-10913445 1.0000 120 chrX:6574617-6574737 1.0000 120 chr2L:14651802-14651922 1.0000 120 chr3R:24598667-24598787 1.0000 120 chr2L:16485769-16485889 1.0000 120 chr3L:17981227-17981347 1.0000 120 chr3R:20280670-20280790 1.0000 120 chr2R:23020430-23020550 1.0000 120 chr3L:19234480-19234600 1.0000 120 chr3L:10398959-10399079 1.0000 120 chr2L:7073158-7073278 1.0000 120 chr3L:10315080-10315200 1.0000 120 chr2R:8065333-8065453 1.0000 120 chr2L:20335090-20335210 1.0000 120 chrX:21073761-21073881 1.0000 120 chrX:11730074-11730194 1.0000 120 chr2R:10216472-10216592 1.0000 120 chr3R:6106900-6107020 1.0000 120 chr3L:1900772-1900892 1.0000 120 chr3L:10386210-10386330 1.0000 120 chr2R:14326102-14326222 1.0000 120 chr3L:9566958-9567078 1.0000 120 chr2L:6276934-6277054 1.0000 120 chr3L:17572195-17572315 1.0000 120 chr3R:31712701-31712821 1.0000 120 chr2R:8358058-8358178 1.0000 120 chr3R:8971932-8972052 1.0000 120 chr3R:31768346-31768466 1.0000 120 chr3R:19104258-19104378 1.0000 120 chr2R:23306073-23306193 1.0000 120 chr2L:172087-172207 1.0000 120 chr3R:21704515-21704635 1.0000 120 chr2R:9557611-9557731 1.0000 120 chr2R:17243715-17243835 1.0000 120 chr2L:14318727-14318847 1.0000 120 chr3R:12297363-12297483 1.0000 120 chrX:8891104-8891224 1.0000 120 chr2R:18663159-18663279 1.0000 120 chr2L:8229266-8229386 1.0000 120 chrX:9468444-9468564 1.0000 120 chr2R:7909573-7909693 1.0000 120 chr3R:26500495-26500615 1.0000 120 chr2L:7949879-7949999 1.0000 120 chr3R:31767649-31767769 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_dac/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/dac.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.328 C 0.17 G 0.173 T 0.329 Background letter frequencies (from file dataset with add-one prior applied): A 0.328 C 0.17 G 0.173 T 0.329 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTGCASHG MEME-1 width = 8 sites = 29 llr = 261 E-value = 5.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGCASHG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::a:2: pos.-specific C :::a:43: probability G a1a::4:7 matrix T :9:::143 bits 2.6 * ** 2.3 * ** 2.0 * ** 1.8 * ** Relative 1.5 * *** * Entropy 1.3 * *** * (13.0 bits) 1.0 ****** * 0.8 ****** * 0.5 ****** * 0.3 ******** 0.0 -------- Multilevel GTGCACTG consensus GCT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCASHG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3656961-3657081 23 2.75e-06 ATCCACCTCC GTGCACCG CAAGAAATTT chr3R:23416768-23416888 83 5.54e-06 TTTTTTCTGA GTGCAGCG GCAACCGGCA chr3R:8038015-8038135 5 1.09e-05 AAAT GTGCACTG GGAGAAAAAT chr3R:23395798-23395918 2 1.09e-05 A GTGCACTG AAAAAAATAG chr3R:9420935-9421055 14 1.09e-05 GAAGAAGGAG GTGCACTG CACAGAGAGA chrX:1119320-1119440 5 1.09e-05 TTCA GTGCACTG CAAGAAACCA chr2L:604214-604334 10 1.09e-05 CAACTGCAA GTGCACTG TAAGAAATCG chr3R:24204155-24204275 113 1.09e-05 TTTTTCCCCA GTGCACTG chr3R:31462331-31462451 71 1.63e-05 TCACCTTTTC GTGCAGTG TACTTGGCCA chr2L:243997-244117 80 1.63e-05 TGTAAAATCA GTGCAGTG CAAATTTTTC chr3R:31712701-31712821 38 2.16e-05 GTGTGCCATC GTGCACAG CAAAACTAGT chr3L:4393003-4393123 98 2.16e-05 TTTTCTTTCT GTGCACAG TGCCACCTCG chr2R:14326102-14326222 9 2.69e-05 AGACTCTT GTGCAGAG AGAAAAAAAA chr3L:10376853-10376973 101 2.84e-05 TTTGGAGAGT GGGCACCG AGTGTGTGCC chr3R:21733159-21733279 75 3.51e-05 ATCGCCTGGG GGGCAGCG TATGATGCCC chr3R:14720273-14720393 65 3.51e-05 GTTTCTTGCG GTGCACCT ATTGCTTTTT chr3L:10315080-10315200 97 4.04e-05 TTTTTTCCCA GTGCAGCT TTCAAGCCCG chrX:5002896-5003016 100 4.04e-05 AATGAAATAG GTGCAGCT TGATCTGTTT chrX:5608625-5608745 14 4.04e-05 AGTGTCAGAA GTGCAGCT TGTGAAACCA chrX:11730074-11730194 62 7.17e-05 CCACATGCAT GTGCAGTT ACAGGTTGCA chr3L:8422425-8422545 72 7.17e-05 ATGCATGTCT GTGCAGTT TCAAACTTTC chr2R:20055475-20055595 74 8.20e-05 ATTCTTTTCT GTGCATTG GGGTTTCAGG chr3R:31243240-31243360 103 8.20e-05 ATTTCTCCCG GTGCATTG CTTTTGAATT chr3R:30312646-30312766 107 8.20e-05 TAGCACTTTT GTGCATTG GTTTTA chr3R:15410598-15410718 45 8.48e-05 TCAAGCTTGT GGGCACAG TGGGCCTGGG chr2L:172087-172207 18 1.08e-04 TTTTAATTTG GTGCAGAT TAAACATTGG chrX:19290043-19290163 84 1.08e-04 TTTTTTAaca gtgcagat acagatagcc chr3L:1392674-1392794 32 1.18e-04 GCCAAAACGG GTGCATAG ATGAGTCTTG chr3R:6214355-6214475 79 1.26e-04 AACAATTTTA GAGCACCG ATCTAGGACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCASHG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3656961-3657081 2.7e-06 22_[+1]_90 chr3R:23416768-23416888 5.5e-06 82_[+1]_30 chr3R:8038015-8038135 1.1e-05 4_[+1]_108 chr3R:23395798-23395918 1.1e-05 1_[+1]_111 chr3R:9420935-9421055 1.1e-05 13_[+1]_99 chrX:1119320-1119440 1.1e-05 4_[+1]_108 chr2L:604214-604334 1.1e-05 9_[+1]_103 chr3R:24204155-24204275 1.1e-05 112_[+1] chr3R:31462331-31462451 1.6e-05 70_[+1]_42 chr2L:243997-244117 1.6e-05 79_[+1]_33 chr3R:31712701-31712821 2.2e-05 37_[+1]_75 chr3L:4393003-4393123 2.2e-05 97_[+1]_15 chr2R:14326102-14326222 2.7e-05 8_[+1]_104 chr3L:10376853-10376973 2.8e-05 100_[+1]_12 chr3R:21733159-21733279 3.5e-05 74_[+1]_38 chr3R:14720273-14720393 3.5e-05 64_[+1]_48 chr3L:10315080-10315200 4e-05 96_[+1]_16 chrX:5002896-5003016 4e-05 99_[+1]_13 chrX:5608625-5608745 4e-05 13_[+1]_99 chrX:11730074-11730194 7.2e-05 61_[+1]_51 chr3L:8422425-8422545 7.2e-05 71_[+1]_41 chr2R:20055475-20055595 8.2e-05 73_[+1]_39 chr3R:31243240-31243360 8.2e-05 102_[+1]_10 chr3R:30312646-30312766 8.2e-05 106_[+1]_6 chr3R:15410598-15410718 8.5e-05 44_[+1]_68 chr2L:172087-172207 0.00011 17_[+1]_95 chrX:19290043-19290163 0.00011 83_[+1]_29 chr3L:1392674-1392794 0.00012 31_[+1]_81 chr3R:6214355-6214475 0.00013 78_[+1]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCASHG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGCASHG width=8 seqs=29 chr3L:3656961-3657081 ( 23) GTGCACCG 1 chr3R:23416768-23416888 ( 83) GTGCAGCG 1 chr3R:8038015-8038135 ( 5) GTGCACTG 1 chr3R:23395798-23395918 ( 2) GTGCACTG 1 chr3R:9420935-9421055 ( 14) GTGCACTG 1 chrX:1119320-1119440 ( 5) GTGCACTG 1 chr2L:604214-604334 ( 10) GTGCACTG 1 chr3R:24204155-24204275 ( 113) GTGCACTG 1 chr3R:31462331-31462451 ( 71) GTGCAGTG 1 chr2L:243997-244117 ( 80) GTGCAGTG 1 chr3R:31712701-31712821 ( 38) GTGCACAG 1 chr3L:4393003-4393123 ( 98) GTGCACAG 1 chr2R:14326102-14326222 ( 9) GTGCAGAG 1 chr3L:10376853-10376973 ( 101) GGGCACCG 1 chr3R:21733159-21733279 ( 75) GGGCAGCG 1 chr3R:14720273-14720393 ( 65) GTGCACCT 1 chr3L:10315080-10315200 ( 97) GTGCAGCT 1 chrX:5002896-5003016 ( 100) GTGCAGCT 1 chrX:5608625-5608745 ( 14) GTGCAGCT 1 chrX:11730074-11730194 ( 62) GTGCAGTT 1 chr3L:8422425-8422545 ( 72) GTGCAGTT 1 chr2R:20055475-20055595 ( 74) GTGCATTG 1 chr3R:31243240-31243360 ( 103) GTGCATTG 1 chr3R:30312646-30312766 ( 107) GTGCATTG 1 chr3R:15410598-15410718 ( 45) GGGCACAG 1 chr2L:172087-172207 ( 18) GTGCAGAT 1 chrX:19290043-19290163 ( 84) GTGCAGAT 1 chr3L:1392674-1392794 ( 32) GTGCATAG 1 chr3R:6214355-6214475 ( 79) GAGCACCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCASHG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1765 E= 5.5e+000 -1150 -1150 253 -1150 -325 -1150 -74 139 -1150 -1150 253 -1150 -1150 256 -1150 -1150 161 -1150 -1150 -1150 -1150 140 126 -125 -44 87 -1150 45 -1150 -1150 206 -25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCASHG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 5.5e+000 0.000000 0.000000 1.000000 0.000000 0.034483 0.000000 0.103448 0.862069 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.448276 0.413793 0.137931 0.241379 0.310345 0.000000 0.448276 0.000000 0.000000 0.724138 0.275862 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCASHG MEME-1 regular expression -------------------------------------------------------------------------------- GTGCA[CG][TCA][GT] -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCCTGC MEME-2 width = 8 sites = 2 llr = 27 E-value = 6.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCCTGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aaaaa::a probability G ::::::a: matrix T :::::a:: bits 2.6 ***** ** 2.3 ***** ** 2.0 ***** ** 1.8 ***** ** Relative 1.5 ******** Entropy 1.3 ******** (19.5 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCCCCTGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:1558094-1558214 79 1.37e-06 CAATTTGGCC CCCCCTGC TCCCGAGCCA chrX:3454845-3454965 26 1.37e-06 AATAGCAATT CCCCCTGC AGCAACTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1558094-1558214 1.4e-06 78_[+2]_34 chrX:3454845-3454965 1.4e-06 25_[+2]_87 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCCTGC width=8 seqs=2 chr2L:1558094-1558214 ( 79) CCCCCTGC 1 chrX:3454845-3454965 ( 26) CCCCCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 6.3e+003 -765 255 -765 -765 -765 255 -765 -765 -765 255 -765 -765 -765 255 -765 -765 -765 255 -765 -765 -765 -765 -765 160 -765 -765 252 -765 -765 255 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.3e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTGC MEME-2 regular expression -------------------------------------------------------------------------------- CCCCCTGC -------------------------------------------------------------------------------- Time 13.63 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCCCCCA MEME-3 width = 8 sites = 6 llr = 70 E-value = 4.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCCCCCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::8 pos.-specific C a:8a8aa2 probability G ::2:2::: matrix T :a:::::: bits 2.6 * * ** 2.3 * * ** 2.0 * * ** 1.8 * ***** Relative 1.5 ******* Entropy 1.3 ******* (16.7 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTCCCCCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:20280670-20280790 52 2.60e-06 TGATCAGCCC CTCCCCCA CCCGAGGTAC chr2L:9746845-9746965 22 2.60e-06 CACTCTCATT CTCCCCCA CCGCACCCAC chrX:11531380-11531500 112 2.60e-06 CACTGCACCA CTCCCCCA T chr3R:8107084-8107204 42 3.95e-06 CTTCACACCA CTCCCCCC GTTTCCCACA chr3L:756537-756657 71 9.26e-06 CTAGGATATG CTGCCCCA GTGGTTTTAC chr3L:12072492-12072612 9 9.26e-06 AAACTTGG CTCCGCCA CAGTGGTACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:20280670-20280790 2.6e-06 51_[+3]_61 chr2L:9746845-9746965 2.6e-06 21_[+3]_91 chrX:11531380-11531500 2.6e-06 111_[+3]_1 chr3R:8107084-8107204 4e-06 41_[+3]_71 chr3L:756537-756657 9.3e-06 70_[+3]_42 chr3L:12072492-12072612 9.3e-06 8_[+3]_104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCCCCCA width=8 seqs=6 chr3R:20280670-20280790 ( 52) CTCCCCCA 1 chr2L:9746845-9746965 ( 22) CTCCCCCA 1 chrX:11531380-11531500 ( 112) CTCCCCCA 1 chr3R:8107084-8107204 ( 42) CTCCCCCC 1 chr3L:756537-756657 ( 71) CTGCCCCA 1 chr3L:12072492-12072612 ( 9) CTCCGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.6482 E= 4.8e+003 -923 255 -923 -923 -923 -923 -923 160 -923 229 -6 -923 -923 255 -923 -923 -923 229 -6 -923 -923 255 -923 -923 -923 255 -923 -923 134 -3 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.8e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.833333 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCCA MEME-3 regular expression -------------------------------------------------------------------------------- CTCCCCCA -------------------------------------------------------------------------------- Time 19.83 secs. ******************************************************************************** ******************************************************************************** MOTIF SGCRGGCG MEME-4 width = 8 sites = 9 llr = 99 E-value = 5.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGCRGGCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1::4:::: pos.-specific C 6:a:::9: probability G 3a:4a91a matrix T :::1:1:: bits 2.6 ** * * 2.3 ** * * 2.0 ** **** 1.8 ** **** Relative 1.5 ** **** Entropy 1.3 ** **** (15.8 bits) 1.0 *** **** 0.8 *** **** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCAGGCG consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCRGGCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17572195-17572315 52 1.54e-06 TGAGTTgggt ggcgggcg gtgggcggca chr3L:21118773-21118893 71 1.54e-06 AGTTACACGG GGCGGGCG ACTAGAGGTC chr3R:29757863-29757983 1 2.98e-06 . CGCAGGCG AAGCTCTTTG chrX:1090603-1090723 64 2.98e-06 GAGGGATTTC CGCAGGCG GCTCGGCGTC chr2L:20017047-20017167 55 4.45e-06 GGTTTGTTGC GGCAGGCG AATTTCGACA chr2L:712398-712518 49 5.90e-06 TGATCTTGAC CGCTGGCG ATGCAAGAAC chr2L:16485769-16485889 80 8.14e-06 tgagcgagtg agcgggcg CTAACGAGTG chr2L:14651802-14651922 87 1.18e-05 GCCTGCGGTG CGCGGTCG CGCTTCAAGC chr3R:15409244-15409364 14 1.33e-05 GGGGCGATAG CGCAGGGG CGTCATTTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCRGGCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17572195-17572315 1.5e-06 51_[+4]_61 chr3L:21118773-21118893 1.5e-06 70_[+4]_42 chr3R:29757863-29757983 3e-06 [+4]_112 chrX:1090603-1090723 3e-06 63_[+4]_49 chr2L:20017047-20017167 4.4e-06 54_[+4]_58 chr2L:712398-712518 5.9e-06 48_[+4]_64 chr2L:16485769-16485889 8.1e-06 79_[+4]_33 chr2L:14651802-14651922 1.2e-05 86_[+4]_26 chr3R:15409244-15409364 1.3e-05 13_[+4]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCRGGCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGCRGGCG width=8 seqs=9 chr3L:17572195-17572315 ( 52) GGCGGGCG 1 chr3L:21118773-21118893 ( 71) GGCGGGCG 1 chr3R:29757863-29757983 ( 1) CGCAGGCG 1 chrX:1090603-1090723 ( 64) CGCAGGCG 1 chr2L:20017047-20017167 ( 55) GGCAGGCG 1 chr2L:712398-712518 ( 49) CGCTGGCG 1 chr2L:16485769-16485889 ( 80) AGCGGGCG 1 chr2L:14651802-14651922 ( 87) CGCGGTCG 1 chr3R:15409244-15409364 ( 14) CGCAGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCRGGCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.0203 E= 5.3e+003 -156 171 94 -982 -982 -982 253 -982 -982 255 -982 -982 44 -982 136 -156 -982 -982 253 -982 -982 -982 236 -156 -982 238 -64 -982 -982 -982 253 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCRGGCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 5.3e+003 0.111111 0.555556 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.444444 0.000000 0.444444 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.888889 0.111111 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCRGGCG MEME-4 regular expression -------------------------------------------------------------------------------- [CG]GC[AG]GGCG -------------------------------------------------------------------------------- Time 26.02 secs. ******************************************************************************** ******************************************************************************** MOTIF TRGGCCCC MEME-5 width = 8 sites = 4 llr = 50 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRGGCCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :5:::::: pos.-specific C ::::aaaa probability G :5aa:::: matrix T a::::::: bits 2.6 ****** 2.3 ****** 2.0 ****** 1.8 ****** Relative 1.5 * ****** Entropy 1.3 * ****** (18.0 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TAGGCCCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGGCCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:8065333-8065453 101 1.42e-06 GAGTTAGCTT TGGGCCCC Aaataataat chr3L:21118773-21118893 96 1.42e-06 GTCCAGTACT TGGGCCCC CAAAGCGTTT chr3L:10709232-10709352 107 4.12e-06 AAGAGTAAAA TAGGCCCC ACGTTG chr3R:8107084-8107204 63 4.12e-06 TCCCACACCA TAGGCCCC CTTCGAAACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGGCCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:8065333-8065453 1.4e-06 100_[+5]_12 chr3L:21118773-21118893 1.4e-06 95_[+5]_17 chr3L:10709232-10709352 4.1e-06 106_[+5]_6 chr3R:8107084-8107204 4.1e-06 62_[+5]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGGCCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRGGCCCC width=8 seqs=4 chr2R:8065333-8065453 ( 101) TGGGCCCC 1 chr3L:21118773-21118893 ( 96) TGGGCCCC 1 chr3L:10709232-10709352 ( 107) TAGGCCCC 1 chr3R:8107084-8107204 ( 63) TAGGCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGGCCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.5228 E= 1.5e+004 -865 -865 -865 160 61 -865 153 -865 -865 -865 253 -865 -865 -865 253 -865 -865 255 -865 -865 -865 255 -865 -865 -865 255 -865 -865 -865 255 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGGCCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+004 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGGCCCC MEME-5 regular expression -------------------------------------------------------------------------------- T[AG]GGCCCC -------------------------------------------------------------------------------- Time 32.20 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20295974-20296094 1.85e-01 120 chr2R:15808759-15808879 5.69e-01 120 chr3L:1392674-1392794 1.41e-01 120 chr2L:20943255-20943375 7.23e-01 120 chr3L:19329638-19329758 8.05e-01 120 chr3R:29982183-29982303 1.30e-01 120 chr2L:712398-712518 2.90e-03 48_[+4(5.90e-06)]_64 chr2L:19307815-19307935 2.74e-01 120 chr2R:7734123-7734243 4.89e-01 120 chr2R:13769532-13769652 3.20e-01 120 chr3R:26128798-26128918 7.38e-01 120 chr2R:13768471-13768591 8.77e-02 120 chrX:1979115-1979235 6.34e-01 120 chr2R:7905161-7905281 1.81e-01 120 chr2L:3881284-3881404 9.98e-01 120 chrX:11531380-11531500 6.85e-06 9_[+4(5.70e-05)]_68_[+2(5.10e-05)]_\ 18_[+3(2.60e-06)]_1 chrX:6303286-6303406 3.13e-01 120 chr3L:1200527-1200647 4.57e-01 120 chr3R:11606853-11606973 5.53e-01 120 chr2L:1156866-1156986 9.71e-02 120 chrX:724608-724728 4.20e-01 120 chrX:10953419-10953539 5.49e-01 120 chr3R:23365129-23365249 8.93e-01 120 chrX:4982583-4982703 9.99e-01 120 chr2L:3731145-3731265 2.09e-01 120 chr2L:16407521-16407641 9.72e-01 120 chr3R:6215039-6215159 3.48e-01 120 chr3L:3656961-3657081 1.69e-03 22_[+1(2.75e-06)]_90 chr2L:9141092-9141212 7.82e-01 120 chr2L:20716890-20717010 9.77e-01 120 chr2L:3371501-3371621 6.64e-01 120 chr3R:24204155-24204275 3.25e-03 112_[+1(1.09e-05)] chr2L:18724990-18725110 2.10e-01 120 chr3L:21118773-21118893 1.77e-06 70_[+4(1.54e-06)]_17_[+5(1.42e-06)]_\ 17 chr2L:5495102-5495222 6.15e-01 120 chrX:1988850-1988970 1.48e-03 89_[+2(5.10e-05)]_23 chr3L:1905407-1905527 3.78e-01 120 chrX:1090603-1090723 3.88e-04 63_[+4(2.98e-06)]_49 chr3R:14280427-14280547 1.26e-01 120 chr2L:18493330-18493450 3.77e-04 65_[+5(1.11e-05)]_47 chr2L:3436515-3436635 3.83e-01 120 chr3R:30312646-30312766 1.93e-02 106_[+1(8.20e-05)]_6 chr3R:23392385-23392505 1.77e-02 120 chr3L:12060256-12060376 9.14e-01 120 chr3L:2145164-2145284 2.41e-01 120 chr2R:14111919-14112039 7.22e-01 120 chr3R:30567412-30567532 9.95e-01 120 chr3L:8422425-8422545 2.24e-01 71_[+1(7.17e-05)]_41 chr3R:24219246-24219366 2.29e-01 120 chr3L:21229964-21230084 6.95e-01 120 chrX:13911341-13911461 1.00e+00 120 chr3R:6214355-6214475 1.64e-01 120 chr3L:741881-742001 2.22e-01 120 chr2R:12413262-12413382 8.86e-01 120 chr2L:18751370-18751490 1.08e-01 120 chr2R:23761527-23761647 6.87e-01 120 chr2L:18331757-18331877 1.00e+00 120 chr2L:604214-604334 1.78e-02 9_[+1(1.09e-05)]_103 chr2L:3482173-3482293 1.00e+00 120 chr3L:8384122-8384242 2.35e-01 120 chr3L:10796012-10796132 3.31e-01 120 chr3R:15410598-15410718 1.88e-03 44_[+1(8.48e-05)]_68 chrX:4151129-4151249 9.33e-01 120 chr3L:12072492-12072612 1.25e-04 8_[+3(9.26e-06)]_104 chr3L:10444098-10444218 9.94e-01 120 chr3R:29450487-29450607 1.27e-01 120 chr3R:29847238-29847358 4.71e-02 120 chrX:11736562-11736682 9.35e-01 120 chr3L:10376853-10376973 7.43e-04 100_[+1(2.84e-05)]_12 chr2L:15321497-15321617 5.65e-01 120 chrX:3454845-3454965 9.29e-04 25_[+2(1.37e-06)]_87 chr3L:21716145-21716265 4.51e-01 120 chr2R:16742166-16742286 4.87e-01 120 chr3R:8107084-8107204 1.88e-06 41_[+3(3.95e-06)]_13_[+5(4.12e-06)]_\ 50 chrX:14120349-14120469 7.02e-01 120 chr3R:7330844-7330964 1.00e+00 120 chr3L:1844742-1844862 9.01e-01 120 chr3R:8918960-8919080 9.80e-01 120 chr3R:17430578-17430698 9.37e-01 120 chr2L:17397551-17397671 7.97e-01 120 chr2L:1558094-1558214 4.02e-06 78_[+2(1.37e-06)]_34 chr2R:23000785-23000905 3.76e-01 120 chr3L:10398758-10398878 1.92e-01 120 chrX:4264445-4264565 9.24e-01 120 chr3R:31709272-31709392 3.06e-02 48_[+4(5.70e-05)]_64 chrX:16373655-16373775 5.65e-01 120 chr2L:2185580-2185700 6.73e-03 120 chr2R:22148075-22148195 5.74e-01 120 chr2R:11315512-11315632 9.22e-01 120 chr2R:22727133-22727253 4.94e-01 120 chrX:8581468-8581588 9.19e-01 120 chr3R:10028603-10028723 1.18e-01 120 chrX:4965776-4965896 6.32e-01 120 chr3R:18487956-18488076 9.41e-01 120 chr2R:8353405-8353525 9.54e-01 120 chr3L:713949-714069 2.17e-02 108_[+5(5.80e-05)]_4 chr2L:1926028-1926148 1.00e+00 120 chrX:4999155-4999275 9.98e-01 120 chr3L:8782186-8782306 9.58e-01 120 chr2L:18752155-18752275 6.77e-01 120 chr2R:23031009-23031129 7.93e-01 120 chr3R:24891043-24891163 9.97e-01 120 chr2R:15737232-15737352 7.57e-01 120 chr2L:20340785-20340905 5.49e-01 120 chr3R:13831174-13831294 5.49e-01 120 chr3L:11536879-11536999 7.47e-01 120 chr2R:10847473-10847593 9.97e-01 120 chrX:14812408-14812528 9.09e-01 120 chr3R:10154423-10154543 7.35e-01 120 chr2R:20024397-20024517 9.62e-01 120 chr2L:19899641-19899761 1.21e-01 120 chr2R:7282259-7282379 5.13e-01 120 chr3L:11448468-11448588 3.26e-01 120 chr2L:5090448-5090568 5.13e-01 120 chrX:19290043-19290163 1.29e-01 120 chr3R:8470701-8470821 1.00e+00 120 chr3L:5609608-5609728 9.25e-01 120 chrX:1080856-1080976 1.33e-01 120 chr2R:18353552-18353672 5.99e-01 120 chr3R:23416768-23416888 1.38e-02 82_[+1(5.54e-06)]_30 chrX:5977248-5977368 3.45e-01 120 chr3R:14486670-14486790 4.54e-01 120 chrX:1119320-1119440 4.40e-02 4_[+1(1.09e-05)]_108 chr3R:21688049-21688169 1.00e+00 120 chr3R:9420935-9421055 9.43e-03 13_[+1(1.09e-05)]_99 chr3L:4393003-4393123 7.12e-02 97_[+1(2.16e-05)]_15 chr3R:23395798-23395918 7.30e-02 1_[+1(1.09e-05)]_111 chr2L:16804353-16804473 7.14e-02 120 chrX:715513-715633 7.70e-01 120 chr2L:664432-664552 9.28e-01 120 chr2L:18005649-18005769 9.74e-01 120 chr2L:7918913-7919033 9.24e-01 120 chrX:10959991-10960111 8.53e-01 120 chr2R:7173140-7173260 3.34e-01 120 chr3R:24910243-24910363 9.86e-01 120 chr3R:31243240-31243360 9.54e-02 102_[+1(8.20e-05)]_10 chr2L:15343514-15343634 5.44e-01 120 chr3L:15252577-15252697 7.64e-01 120 chr3R:22150004-22150124 6.39e-01 120 chr3L:6331844-6331964 1.00e+00 120 chrX:12766458-12766578 9.88e-01 120 chr3R:21703508-21703628 3.05e-01 120 chr2R:7744712-7744832 9.88e-01 120 chr3R:13857432-13857552 2.22e-02 120 chrX:11653143-11653263 6.85e-01 120 chr3R:14720273-14720393 7.76e-02 64_[+1(3.51e-05)]_48 chr2L:20370304-20370424 6.80e-01 120 chr2L:2478428-2478548 3.94e-01 120 chr3L:8319228-8319348 6.65e-01 120 chr3R:16336453-16336573 1.76e-01 120 chrX:3739332-3739452 9.78e-01 120 chr3R:19264956-19265076 2.20e-01 120 chr3L:756537-756657 5.62e-03 70_[+3(9.26e-06)]_42 chr2L:7938643-7938763 9.71e-01 120 chr2L:243997-244117 1.72e-02 79_[+1(1.63e-05)]_33 chr3R:23390891-23391011 8.07e-01 120 chr2R:18901742-18901862 4.22e-01 120 chr2L:7513798-7513918 9.78e-01 120 chrX:10933975-10934095 1.82e-02 120 chrX:4959049-4959169 7.26e-01 120 chrX:20130623-20130743 9.88e-01 120 chr3R:30344752-30344872 4.73e-01 120 chrX:7179381-7179501 9.58e-01 120 chr3R:31320001-31320121 8.25e-01 120 chr3L:16310093-16310213 7.11e-02 14_[+4(4.88e-05)]_98 chr2L:9746845-9746965 7.66e-04 21_[+3(2.60e-06)]_91 chr2R:20055475-20055595 3.31e-02 73_[+1(8.20e-05)]_39 chrX:18542045-18542165 7.86e-01 120 chr3L:2582438-2582558 1.00e+00 120 chr3R:31314617-31314737 1.25e-01 120 chrX:6333494-6333614 2.53e-01 120 chrX:3453525-3453645 3.72e-01 120 chrX:16873149-16873269 9.53e-01 120 chrX:6357146-6357266 1.05e-01 120 chrX:8839471-8839591 9.68e-01 120 chrX:5608625-5608745 1.69e-01 13_[+1(4.04e-05)]_99 chr3R:26019322-26019442 9.98e-01 120 chrX:3436341-3436461 9.88e-01 120 chrX:13909246-13909366 9.94e-01 120 chr3R:15409244-15409364 1.94e-02 13_[+4(1.33e-05)]_99 chr3R:16763713-16763833 4.33e-02 120 chr3L:10709232-10709352 4.02e-03 106_[+5(4.12e-06)]_6 chr3L:9745490-9745610 9.94e-01 120 chr3R:31482221-31482341 2.98e-01 120 chrX:9738624-9738744 9.98e-01 120 chr2L:16804569-16804689 5.30e-02 120 chr3R:28850830-28850950 2.75e-01 120 chr2L:20017047-20017167 2.52e-02 54_[+4(4.45e-06)]_58 chr3R:21733159-21733279 4.70e-03 44_[+1(9.77e-05)]_22_[+1(3.51e-05)]_\ 38 chr3L:787768-787888 8.54e-01 120 chr3R:29757863-29757983 2.51e-03 [+4(2.98e-06)]_112 chrX:9068123-9068243 9.45e-01 120 chrX:5002896-5003016 3.34e-01 99_[+1(4.04e-05)]_13 chr2R:18300953-18301073 7.84e-01 120 chr3R:24264214-24264334 2.92e-01 24_[+4(4.17e-05)]_88 chr2R:18244018-18244138 3.94e-01 120 chr3R:8233994-8234114 9.32e-01 120 chr2R:22119861-22119981 7.02e-01 120 chr3L:5626619-5626739 8.46e-01 120 chr2L:9505878-9505998 4.42e-01 120 chr3L:15708679-15708799 9.87e-01 120 chr3R:15927335-15927455 6.08e-02 120 chr3R:6229246-6229366 6.26e-01 120 chr3R:31462331-31462451 7.47e-03 70_[+1(1.63e-05)]_42 chr3R:8038015-8038135 8.76e-02 4_[+1(1.09e-05)]_108 chrX:17914589-17914709 9.39e-01 120 chr3L:10913325-10913445 9.96e-01 120 chrX:6574617-6574737 2.85e-01 120 chr2L:14651802-14651922 2.14e-02 86_[+4(1.18e-05)]_26 chr3R:24598667-24598787 7.60e-01 120 chr2L:16485769-16485889 2.02e-03 79_[+4(8.14e-06)]_33 chr3L:17981227-17981347 8.10e-01 120 chr3R:20280670-20280790 5.97e-05 51_[+3(2.60e-06)]_61 chr2R:23020430-23020550 9.22e-01 120 chr3L:19234480-19234600 3.46e-01 120 chr3L:10398959-10399079 2.55e-01 120 chr2L:7073158-7073278 9.97e-01 120 chr3L:10315080-10315200 6.53e-02 96_[+1(4.04e-05)]_16 chr2R:8065333-8065453 5.71e-04 100_[+5(1.42e-06)]_12 chr2L:20335090-20335210 9.52e-01 120 chrX:21073761-21073881 6.56e-01 120 chrX:11730074-11730194 1.89e-02 61_[+1(7.17e-05)]_51 chr2R:10216472-10216592 2.64e-01 120 chr3R:6106900-6107020 5.19e-01 120 chr3L:1900772-1900892 9.82e-01 120 chr3L:10386210-10386330 7.06e-01 120 chr2R:14326102-14326222 3.62e-02 8_[+1(2.69e-05)]_104 chr3L:9566958-9567078 9.54e-01 120 chr2L:6276934-6277054 6.32e-01 120 chr3L:17572195-17572315 3.71e-05 51_[+4(1.54e-06)]_61 chr3R:31712701-31712821 2.21e-02 37_[+1(2.16e-05)]_75 chr2R:8358058-8358178 9.99e-01 120 chr3R:8971932-8972052 1.82e-01 120 chr3R:31768346-31768466 3.77e-01 120 chr3R:19104258-19104378 2.27e-01 120 chr2R:23306073-23306193 9.78e-01 120 chr2L:172087-172207 3.07e-02 120 chr3R:21704515-21704635 2.25e-01 120 chr2R:9557611-9557731 7.17e-01 120 chr2R:17243715-17243835 9.98e-01 120 chr2L:14318727-14318847 9.98e-01 120 chr3R:12297363-12297483 7.56e-01 120 chrX:8891104-8891224 3.91e-02 120 chr2R:18663159-18663279 6.97e-01 120 chr2L:8229266-8229386 6.35e-02 120 chrX:9468444-9468564 4.56e-01 120 chr2R:7909573-7909693 7.15e-02 120 chr3R:26500495-26500615 8.63e-01 120 chr2L:7949879-7949999 4.81e-01 120 chr3R:31767649-31767769 1.06e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************