******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/da.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:17476230-17476350 1.0000 120 chr2R:13194921-13195041 1.0000 120 chr2R:24279811-24279931 1.0000 120 chr3R:25596554-25596674 1.0000 120 chr3R:26040075-26040195 1.0000 120 chr3L:16049224-16049344 1.0000 120 chr3R:9144411-9144531 1.0000 120 chr2R:22408457-22408577 1.0000 120 chr3R:9024993-9025113 1.0000 120 chr2R:20836482-20836602 1.0000 120 chr3R:26032347-26032467 1.0000 120 chr3L:7156332-7156452 1.0000 120 chr2R:6961577-6961697 1.0000 120 chr3L:2881778-2881898 1.0000 120 chrX:21368522-21368642 1.0000 120 chr3R:26024705-26024825 1.0000 120 chr3R:7089604-7089724 1.0000 120 chr3L:5810143-5810263 1.0000 120 chr2R:24275478-24275598 1.0000 120 chr2R:12970723-12970843 1.0000 120 chr2R:18672226-18672346 1.0000 120 chr3L:15847277-15847397 1.0000 120 chr2L:19155111-19155231 1.0000 120 chr2R:21101590-21101710 1.0000 120 chr3L:643455-643575 1.0000 120 chr3L:10851582-10851702 1.0000 120 chr3R:11877291-11877411 1.0000 120 chr3R:23922316-23922436 1.0000 120 chr3R:6992029-6992149 1.0000 120 chr3L:815934-816054 1.0000 120 chr2L:18629193-18629313 1.0000 120 chr3L:11253788-11253908 1.0000 120 chr2L:4813023-4813143 1.0000 120 chr2R:11045833-11045953 1.0000 120 chr3R:31794634-31794754 1.0000 120 chr3L:6790685-6790805 1.0000 120 chr3L:1420032-1420152 1.0000 120 chr2R:13188085-13188205 1.0000 120 chr2L:3094968-3095088 1.0000 120 chr3L:15163556-15163676 1.0000 120 chr2L:18980724-18980844 1.0000 120 chr3R:18923862-18923982 1.0000 120 chrX:17160582-17160702 1.0000 120 chr2L:19219530-19219650 1.0000 120 chr3R:14569519-14569639 1.0000 120 chr3L:20472927-20473047 1.0000 120 chrX:21281305-21281425 1.0000 120 chr3L:6904142-6904262 1.0000 120 chr2L:13512942-13513062 1.0000 120 chr3L:297101-297221 1.0000 120 chr3L:10858814-10858934 1.0000 120 chr3L:20517586-20517706 1.0000 120 chr4:802852-802972 1.0000 120 chr2R:13569822-13569942 1.0000 120 chr3L:19682987-19683107 1.0000 120 chr3L:21476640-21476760 1.0000 120 chr3L:11123952-11124072 1.0000 120 chr2R:6971013-6971133 1.0000 120 chr3R:16234496-16234616 1.0000 120 chr3R:7105731-7105851 1.0000 120 chr2L:10372620-10372740 1.0000 120 chr3L:774706-774826 1.0000 120 chr3R:19017867-19017987 1.0000 120 chr3R:19934986-19935106 1.0000 120 chr2R:10432462-10432582 1.0000 120 chrX:3779860-3779980 1.0000 120 chr3L:742632-742752 1.0000 120 chr3R:26552386-26552506 1.0000 120 chr3L:22054972-22055092 1.0000 120 chrX:3137905-3138025 1.0000 120 chr3L:5152566-5152686 1.0000 120 chr2L:7157429-7157549 1.0000 120 chr3L:10674981-10675101 1.0000 120 chr3R:26030628-26030748 1.0000 120 chr2L:3114254-3114374 1.0000 120 chr3R:21580178-21580298 1.0000 120 chr2R:20600804-20600924 1.0000 120 chrX:10802259-10802379 1.0000 120 chr3L:10659668-10659788 1.0000 120 chr2L:16271569-16271689 1.0000 120 chr2R:21048276-21048396 1.0000 120 chrX:8650945-8651065 1.0000 120 chr2L:15492142-15492262 1.0000 120 chr2R:19436944-19437064 1.0000 120 chr3L:13674771-13674891 1.0000 120 chr2R:13570928-13571048 1.0000 120 chr3L:7984845-7984965 1.0000 120 chr3R:22041761-22041881 1.0000 120 chr3L:2237334-2237454 1.0000 120 chr2L:6079049-6079169 1.0000 120 chr2R:21090663-21090783 1.0000 120 chr3R:16282239-16282359 1.0000 120 chr2R:7486507-7486627 1.0000 120 chr2L:4363875-4363995 1.0000 120 chr2R:11529692-11529812 1.0000 120 chr2R:19631149-19631269 1.0000 120 chr3R:7075125-7075245 1.0000 120 chrX:8924921-8925041 1.0000 120 chr3L:7370468-7370588 1.0000 120 chr3R:18919023-18919143 1.0000 120 chr3R:27148994-27149114 1.0000 120 chr2L:15435950-15436070 1.0000 120 chr3L:17653297-17653417 1.0000 120 chr3R:5107053-5107173 1.0000 120 chr2L:14517499-14517619 1.0000 120 chr2L:7811814-7811934 1.0000 120 chr2R:12916481-12916601 1.0000 120 chr2R:20846072-20846192 1.0000 120 chr3L:12693015-12693135 1.0000 120 chr3R:9226956-9227076 1.0000 120 chr3R:9529503-9529623 1.0000 120 chr2R:12776154-12776274 1.0000 120 chr2R:9694830-9694950 1.0000 120 chr3R:26002547-26002667 1.0000 120 chr2L:14261954-14262074 1.0000 120 chr2L:17222229-17222349 1.0000 120 chr3R:30200302-30200422 1.0000 120 chr2R:6573554-6573674 1.0000 120 chr3L:5932579-5932699 1.0000 120 chr3L:11384454-11384574 1.0000 120 chr3L:14131760-14131880 1.0000 120 chrX:15063828-15063948 1.0000 120 chr3L:21216815-21216935 1.0000 120 chr2R:17477103-17477223 1.0000 120 chr3L:8110338-8110458 1.0000 120 chr3R:19092581-19092701 1.0000 120 chrX:18775089-18775209 1.0000 120 chrX:19867075-19867195 1.0000 120 chr2R:6133373-6133493 1.0000 120 chr3R:7000781-7000901 1.0000 120 chr3L:10898203-10898323 1.0000 120 chr2L:377955-378075 1.0000 120 chr3L:8347504-8347624 1.0000 120 chr3R:12648012-12648132 1.0000 120 chr2L:6722964-6723084 1.0000 120 chr3R:20829971-20830091 1.0000 120 chr2R:11096398-11096518 1.0000 120 chr3R:26006038-26006158 1.0000 120 chr2L:15432368-15432488 1.0000 120 chr3R:25626845-25626965 1.0000 120 chr2R:8655383-8655503 1.0000 120 chr2L:12003082-12003202 1.0000 120 chr3L:6742368-6742488 1.0000 120 chr2L:14490115-14490235 1.0000 120 chr3L:20402804-20402924 1.0000 120 chr3R:20829243-20829363 1.0000 120 chr2L:19867008-19867128 1.0000 120 chr2L:14443995-14444115 1.0000 120 chrX:6678192-6678312 1.0000 120 chrX:8063447-8063567 1.0000 120 chr2L:15425745-15425865 1.0000 120 chr3R:11368852-11368972 1.0000 120 chr2L:6081393-6081513 1.0000 120 chr3R:26035246-26035366 1.0000 120 chr3L:21196722-21196842 1.0000 120 chrX:19268779-19268899 1.0000 120 chr2R:23567344-23567464 1.0000 120 chrX:2073440-2073560 1.0000 120 chr3R:27239068-27239188 1.0000 120 chrX:11146861-11146981 1.0000 120 chr2L:14497805-14497925 1.0000 120 chr2L:19181796-19181916 1.0000 120 chr2R:24745992-24746112 1.0000 120 chr3R:6350817-6350937 1.0000 120 chr3R:5021626-5021746 1.0000 120 chr3R:12986170-12986290 1.0000 120 chr2R:21663178-21663298 1.0000 120 chr3L:22402934-22403054 1.0000 120 chr3R:8801399-8801519 1.0000 120 chr2R:19669046-19669166 1.0000 120 chr2L:8163768-8163888 1.0000 120 chr3R:14017780-14017900 1.0000 120 chr3R:14286978-14287098 1.0000 120 chr2L:1362339-1362459 1.0000 120 chr2R:17091846-17091966 1.0000 120 chr2R:22657045-22657165 1.0000 120 chr3R:18399592-18399712 1.0000 120 chrX:15081179-15081299 1.0000 120 chr2R:9577958-9578078 1.0000 120 chr3L:18022629-18022749 1.0000 120 chr3L:19895726-19895846 1.0000 120 chr3L:12350465-12350585 1.0000 120 chr3R:17811551-17811671 1.0000 120 chr2L:13833074-13833194 1.0000 120 chr3R:6667305-6667425 1.0000 120 chr3L:15554350-15554470 1.0000 120 chr3R:15973674-15973794 1.0000 120 chr2R:23573225-23573345 1.0000 120 chr3R:4453695-4453815 1.0000 120 chr3R:16255326-16255446 1.0000 120 chr2R:16828915-16829035 1.0000 120 chr2R:22700843-22700963 1.0000 120 chrX:656138-656258 1.0000 120 chr3R:31309369-31309489 1.0000 120 chrX:20503371-20503491 1.0000 120 chr3R:25445966-25446086 1.0000 120 chr3R:24870834-24870954 1.0000 120 chr3R:15666191-15666311 1.0000 120 chr3R:18298358-18298478 1.0000 120 chr3R:7037483-7037603 1.0000 120 chr2R:12274356-12274476 1.0000 120 chr2R:7674345-7674465 1.0000 120 chr2R:24743674-24743794 1.0000 120 chr3R:16847376-16847496 1.0000 120 chr2R:14458360-14458480 1.0000 120 chr2R:13561101-13561221 1.0000 120 chr3R:13837940-13838060 1.0000 120 chrX:8058517-8058637 1.0000 120 chr3R:8269804-8269924 1.0000 120 chr2L:14234041-14234161 1.0000 120 chrX:14627251-14627371 1.0000 120 chr2L:22018890-22019010 1.0000 120 chr3R:26436728-26436848 1.0000 120 chrX:13253113-13253233 1.0000 120 chrX:6109966-6110086 1.0000 120 chr2L:2130261-2130381 1.0000 120 chr2L:18881402-18881522 1.0000 120 chr3R:26018280-26018400 1.0000 120 chr3L:6743714-6743834 1.0000 120 chr2L:15751120-15751240 1.0000 120 chr2R:20067270-20067390 1.0000 120 chr3L:9446751-9446871 1.0000 120 chr3R:29148219-29148339 1.0000 120 chr2L:19135054-19135174 1.0000 120 chr2L:18150626-18150746 1.0000 120 chr3L:8689836-8689956 1.0000 120 chr2L:5245635-5245755 1.0000 120 chr3R:7977682-7977802 1.0000 120 chr3R:23387103-23387223 1.0000 120 chr2L:9938748-9938868 1.0000 120 chr2L:12027264-12027384 1.0000 120 chrX:19750828-19750948 1.0000 120 chrX:5883492-5883612 1.0000 120 chr3R:10868519-10868639 1.0000 120 chr2L:18567697-18567817 1.0000 120 chr2R:24402712-24402832 1.0000 120 chr2L:2885198-2885318 1.0000 120 chr3R:21161762-21161882 1.0000 120 chrX:16782175-16782295 1.0000 120 chr2R:22670702-22670822 1.0000 120 chr2L:13060076-13060196 1.0000 120 chr3R:16099866-16099986 1.0000 120 chr2R:24086624-24086744 1.0000 120 chrX:19751028-19751148 1.0000 120 chrX:7604540-7604660 1.0000 120 chr3L:772315-772435 1.0000 120 chr3L:4825747-4825867 1.0000 120 chrX:2136482-2136602 1.0000 120 chr3L:16770008-16770128 1.0000 120 chr2R:21282401-21282521 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_da/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/da.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.258 C 0.25 G 0.247 T 0.244 Background letter frequencies (from file dataset with add-one prior applied): A 0.258 C 0.25 G 0.247 T 0.244 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RCAGCTGY MEME-1 width = 8 sites = 178 llr = 1299 E-value = 3.4e-111 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4:9:11:: pos.-specific C 1a:19::5 probability G 5::81:a1 matrix T ::11:9:3 bits 2.0 * * 1.8 * * 1.6 ** * 1.4 ** ** Relative 1.2 ****** Entropy 1.0 ****** (10.5 bits) 0.8 ****** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCTGC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:13060076-13060196 84 1.48e-05 GCGCACGAAC GCAGCTGC AGAGCGACAG chr2L:18881402-18881522 32 1.48e-05 TGGCACTGGT GCAGCTGC AACCGGTTCC chr2L:14234041-14234161 111 1.48e-05 ACCGAGTGGA GCAGCTGC AA chrX:8058517-8058637 12 1.48e-05 ACTGAAAGTT GCAGCTGC TCAGGCGTGC chr3R:25445966-25446086 89 1.48e-05 GTAAGCAACT GCAGCTGC CGTCGCCGCC chr3L:15554350-15554470 46 1.48e-05 aacaaccaca gcagctgc aacaaccaca chr3R:7075125-7075245 14 1.48e-05 ttgtgtgagt gCAGCTGC TTTTGAATTT chr2L:15492142-15492262 7 1.48e-05 ACAACA GCAGCTGC GCGCGctttc chr2R:21048276-21048396 78 1.48e-05 GTTGGCAGCT GCAGCTGC GCAGGTAGCC chr3L:10659668-10659788 101 1.48e-05 TACCCAAAAG GCAGCTGC AAAagttgct chrX:3779860-3779980 84 1.48e-05 TCGGCTAGCA GCAGCTGC TTTCCGTTTT chr2R:10432462-10432582 12 1.48e-05 GAGTCGTAGT GCAGCTGC AGTTTTCACT chr3L:11123952-11124072 69 1.48e-05 TTGTTGCTTC GCAGCTGC AGCCACACCA chr4:802852-802972 45 1.48e-05 GTTATTGTTG GCAGCTGC TACTGCCGCA chr2L:13512942-13513062 38 1.48e-05 AGCTGCTGCT GCAGCTGC GACGCTGTTG chr3L:1420032-1420152 25 1.48e-05 GGCCAAGTCT GCAGCTGC CGTGTCGATG chr3L:10851582-10851702 56 1.48e-05 tactacagct gcagctgc aggtacagat chr3L:643455-643575 49 1.48e-05 ATGCCCCGTG GCAGCTGC AGCTGTTTCT chr2R:21101590-21101710 74 1.48e-05 GTCGCAGTCG GCAGCTGC ACATCTGTCG chr2R:18672226-18672346 53 1.48e-05 GTTCAGTCCT GCAGCTGC AAAGATTACC chr3R:7089604-7089724 39 1.48e-05 GACCGAAGAG GCAGCTGC TATCGAATTT chr2R:22408457-22408577 57 1.48e-05 GGAGCTCACT GCAGCTGC AACGCGGCGC chr3L:16049224-16049344 21 1.48e-05 ACGTGTGCCG GCAGCTGC AGCAACTAGG chrX:16782175-16782295 36 4.48e-05 AGGTGCAAAC ACAGCTGC GACATTAGTT chr3R:10868519-10868639 67 4.48e-05 GCTTGGGAAA ACAGCTGC ACGCGATGAA chr3R:29148219-29148339 102 4.48e-05 TCGCGGCCTG ACAGCTGC GACCTTGGAC chr3L:6743714-6743834 17 4.48e-05 CTTTGCGAGA GCAGCTGT GAGTCTAACC chr3R:7037483-7037603 45 4.48e-05 GAGCAAGCAA GCAGCTGT TTCTGTGTCA chr2R:17091846-17091966 94 4.48e-05 CTATCGACTT GCAGCTGT TTCGATAGAT chr2L:15425745-15425865 29 4.48e-05 GAACGCAGAT ACAGCTGC AGATCGGGCA chr2R:6133373-6133493 104 4.48e-05 CAATACAAAC ACAGCTGC AACCCATAA chrX:18775089-18775209 25 4.48e-05 TGTTTGTCTA ACAGCTGC CGTGGGGCCT chrX:15063828-15063948 64 4.48e-05 AACGCTGTCA GCAGCTGT CACTTGCAAC chr2R:6573554-6573674 17 4.48e-05 ATCATTAACG ACAGCTGC TCAACAGGCG chr2R:9694830-9694950 88 4.48e-05 ACGAGGGGCA ACAGCTGC AGGATCTAAA chr3R:9226956-9227076 16 4.48e-05 GAGAGGGTGA GCAGCTGT TGTCTGACAA chr2L:7811814-7811934 40 4.48e-05 GCAGGTTTCA ACAGCTGC AGTCCCCCCG chr3L:7370468-7370588 113 4.48e-05 AACAGCTGGT ACAGCTGC chr2R:11529692-11529812 64 4.48e-05 GTTGCCGTCG GCAGCTGT TGATTTTCCG chr2R:7486507-7486627 21 4.48e-05 CCCGAGAAAG GCAGCTGT GTGCCGCGCG chr3R:16282239-16282359 27 4.48e-05 AAAGTCAACA ACAGCTGC TTACAGTTTG chr3L:7984845-7984965 68 4.48e-05 ACTTTTTGGA ACAGCTGC TGTCGGCTGA chr2R:20600804-20600924 13 4.48e-05 ATAATGAGCG ACAGCTGC TTCAACTTCG chr3R:21580178-21580298 70 4.48e-05 tgcttgcttg acagctgc tgctgttgct chr3L:10674981-10675101 41 4.48e-05 ATTTAAATGG GCAGCTGT CAGCTGCTGC chr3L:5152566-5152686 84 4.48e-05 CTTTGTTTTG ACAGCTGC ACAAGCGACC chr3L:21476640-21476760 47 4.48e-05 GCCCGCAAAC ACAGCTGC GTCGAAAGTA chr3L:20517586-20517706 61 4.48e-05 ATCTTGATGC GCAGCTGT CCAAAAGACC chr3L:10858814-10858934 71 4.48e-05 ATAGCGTTCC ACAGCTGC TGCTGTCGCT chr2R:13188085-13188205 4 4.48e-05 GGA ACAGCTGC AACTTTTCGA chr3R:31794634-31794754 98 4.48e-05 CTGCCGCCGC ACAGCTGC TCGCCGCGGA chr2R:11045833-11045953 101 4.48e-05 TATTTTTAAT ACAGCTGC TGGCAGGCCG chr3R:23922316-23922436 93 4.48e-05 AGGGGGTAGA GCAGCTGT TCGCCTTGGG chr2L:19155111-19155231 87 4.48e-05 tgctcttgtG ACAGCTGC TAAAAGGGAT chrX:21368522-21368642 50 4.48e-05 CCAACAGCTG ACAGCTGC ACTTTACTTT chr3L:7156332-7156452 69 4.48e-05 AAATTTCGTG ACAGCTGC AGCTGGAGAA chr3R:9024993-9025113 21 4.48e-05 GCGGCATGTG GCAGCTGT CCTTTTTCCC chr3R:26040075-26040195 12 4.48e-05 CTACGAAGTT GCAGCTGT TCCTTGTGAA chr3R:25596554-25596674 16 4.48e-05 TTCCCTCGGC GCAGCTGT TCCTGCGACC chr2R:24402712-24402832 94 5.99e-05 GGTTTTCTTA ACAGCTGT AGAAAATCGA chr2R:16828915-16829035 72 5.99e-05 AGACGGCGGA ACAGCTGT GCGGGATGCA chr2L:14490115-14490235 56 5.99e-05 GGCCACAACA ACAGCTGT GCGAGTGAGC chr3R:7000781-7000901 37 5.99e-05 tcgctctcCC ACAGCTGT TGTGGAGCGG chr2R:12776154-12776274 34 5.99e-05 GCCCGCAACG ACAGCTGT GAAGTCACAA chr3R:7105731-7105851 93 5.99e-05 GATAAGGCAA ACAGCTGT CTGCCCGGAA chr3R:18923862-18923982 101 5.99e-05 TGTTGCGCCG ACAGCTGT TCTGTGTCTG chr3R:9144411-9144531 65 5.99e-05 AAAATGTTTC ACAGCTGT GCGCGAAGGG chr2L:5245635-5245755 91 7.45e-05 CCCGCTGATT GCAGCTGG GCCTCATTTC chr3L:20402804-20402924 76 7.45e-05 AGTTGCAGTT GCAGCTGG CGCAAGGTGA chr2R:8655383-8655503 31 7.45e-05 TCTGCCATCT GCAGCTGG CGCGGGGAAC chr2R:17477103-17477223 42 7.45e-05 ATAAGCATTT GCAGCTGG CACGCTTCAC chr3L:12693015-12693135 38 7.45e-05 TCGCCCGGCC GCAGCTGG CAGATACTTT chr3L:22054972-22055092 49 7.45e-05 GAAGCACGGA GCAGCTGG CGGATGGCCT chr3L:19682987-19683107 16 7.45e-05 gcagcaggta gcagcTGG TGCCATCTGA chr2R:6961577-6961697 91 7.45e-05 GCGACTGCGA GCAGCTGG CGGGAGAACT chr2R:24086624-24086744 101 8.95e-05 TATTTTTGTG CCAGCTGC TTGCCGGTAG chr2L:22018890-22019010 36 8.95e-05 CAGCATTTGA CCAGCTGC AATACATGCA chr3R:4453695-4453815 55 8.95e-05 CACGCGAAAG CCAGCTGC CGCCAAATAA chr2L:6081393-6081513 90 8.95e-05 GCGAACTCTG CCAGCTGC CCTTTCTGCA chr3R:19092581-19092701 4 8.95e-05 CAG CCAGCTGC CAAGGGCGGA chr3R:22041761-22041881 44 8.95e-05 AATATGTTAA CCAGCTGC GCAACTCTGT chr3L:20472927-20473047 54 8.95e-05 CCATCGCGCG CCAGCTGC AGTGGAATTT chr3R:5021626-5021746 53 1.05e-04 AAGCCGCCGC ACAGCTGG ACGAGCGAGT chrX:3137905-3138025 11 1.05e-04 GGAATAAACG ACAGCTGG GCTCCTGGAG chr2R:24279811-24279931 7 1.05e-04 GCTGGC ACAGCTGG CGCAATATTT chr2L:12027264-12027384 113 1.35e-04 CGACTGCgca gcagcagc chr2R:12274356-12274476 23 1.35e-04 gcaagaagca gcagcagC ATCCACCAGT chr3R:18298358-18298478 80 1.35e-04 AACAACAACA GCAGCAGC CGCGGAGCGC chr3R:16255326-16255446 65 1.35e-04 GGGAACTgca gcagcagc aacatcagtg chr2R:11096398-11096518 95 1.35e-04 TTGTGATCCA CCAGCTGT TCAAACGAGA chr3R:12648012-12648132 4 1.35e-04 acg gcagcagc aacaCAAAAT chr3L:8347504-8347624 51 1.35e-04 TTGCCCAACG CCAGCTGT GCACACAACG chr3L:742632-742752 111 1.35e-04 CCTCATCCTC CCAGCTGT CC chr3L:11253788-11253908 74 1.35e-04 CAGCCGGCGG GCAGCAGC AACAACAATG chr3R:6992029-6992149 49 1.35e-04 TTCTTACGCA CCAGCTGT GCGGATACCT chr2R:20836482-20836602 58 1.35e-04 CTCTTCTGCG CCAGCTGT TCCGGTAGCA chr2R:17476230-17476350 62 1.35e-04 AGCCTGAACG GCAGCAGC AGGATATTGC chrX:7604540-7604660 71 1.96e-04 AGCATCATCG GCACCTGC ATATCGCTCA chr2L:18567697-18567817 43 1.96e-04 TGCAAATCAA ACAGCAGC TGACGATGGG chr2L:18150626-18150746 85 1.96e-04 ATAGGCCATA ACAGCAGC GCAACCAGGC chrX:14627251-14627371 3 1.96e-04 AA ACAGCAGC TAGATCAACA chr3R:13837940-13838060 103 1.96e-04 GCCTGCTACG GCACCTGC AGTGCAAATT chr2R:23573225-23573345 53 1.96e-04 GGGGAGGGCA ACAGCAGC CGAGCACATG chr3R:14017780-14017900 77 1.96e-04 gagagaacca acagcagc agagctaggg chr3R:12986170-12986290 75 1.96e-04 GGCGACGGCA GCACCTGC GACATCCAGC chr3L:10898203-10898323 29 1.96e-04 CCGCTATTTT GCAGGTGC TTCTCGGCAA chr3L:21216815-21216935 68 1.96e-04 TCGATGTTTT GCAGCAGT TGGCAACGCG chr2L:3094968-3095088 90 1.96e-04 CATGAAAAAG GCAGGTGC GTGCAGCAAG chr3R:11877291-11877411 5 1.96e-04 GAGA GCAGGTGC AGGTGGTTAC chr3L:15847277-15847397 71 1.96e-04 GGCTGCTGTT GCAGGTGC ACAAGTCAGC chr3L:8689836-8689956 71 2.10e-04 aaacaaacaa GCTGCTGC TTCTAGTTAT chrX:2136482-2136602 51 2.86e-04 TAACGACTAA GCACCTGT GCACGCGATC chr3R:26018280-26018400 10 2.86e-04 CCTCGAATA GCACCTGT TCCCTTCTGC chr3R:27239068-27239188 98 2.86e-04 GAAAACTCAA GCAGGTGT TAAAAGCATC chrX:2073440-2073560 67 2.86e-04 TTCCACAGTG GCAGGTGT TTGTTTCCAA chr2L:6722964-6723084 4 2.86e-04 cac acacctgc acacccacac chr3L:14131760-14131880 52 2.86e-04 GTCAACCAGA GCAGGTGT TGCGTGGGAG chr3R:26002547-26002667 107 2.86e-04 CACGATCGAC ACACCTGC CCTTTT chr3L:17653297-17653417 12 2.86e-04 CTGCCAAGCA GCAGGTGT GCGCAAGGGA chr3R:26030628-26030748 15 2.86e-04 CGCGATGTGC ACACCTGC CATTTAAGAC chr3R:26024705-26024825 111 2.86e-04 CGCTCCGCTC GCACCTGT TG chr3R:24870834-24870954 15 3.02e-04 GATGCCAGAT GCAGATGC GGCCTGCAGT chr2R:12970723-12970843 56 3.02e-04 AAATTAGGCG GCAGATGC AATTTTCTAT chr2L:14497805-14497925 74 3.30e-04 TGACATTGTT GCTGCTGT TAGCCTGCTT chr3R:26006038-26006158 86 3.30e-04 TGCGCGGCCT GCTGCTGT TGCCAGCGGT chr2R:20846072-20846192 70 3.30e-04 GTAACGGACA ACTGCTGC GTGCCACCAA chr2L:9938748-9938868 14 3.75e-04 ATTAACCGAA ACAGGTGT TTGAACAGTG chrX:8924921-8925041 103 3.75e-04 AAGGCTGCTT ACAGGTGT TTATAGTACT chr3L:774706-774826 63 3.75e-04 GGCGCATTCC GCATCTGC TGCTCGCGAG chr3L:21196722-21196842 67 4.21e-04 TTGCCAAACA CCAGCTGG CAGCCATTCG chr3R:25626845-25626965 77 4.21e-04 ACTATCAACA GCAGATGT TCGCGCTCTT chr3R:19934986-19935106 53 4.21e-04 GACATAGCCT CCAGCTGG CACAGCGAGT chrX:21281305-21281425 48 4.21e-04 CCAAGCCAAA GCAGATGT TACCAGCGTG chr3L:815934-816054 74 4.21e-04 GTAACATGTA ACAGATGC GCGCCATATT chr3L:13674771-13674891 76 4.50e-04 AGGCAATTGA ACTGCTGT TGACCCCAGA chr2L:16271569-16271689 55 4.50e-04 TCCCACTCAC TCAGCTGC TTTTGCTGGG chr3R:27148994-27149114 6 4.79e-04 ACCAG ACATCTGC TTGCCATTTG chr2R:19436944-19437064 89 4.79e-04 CCCCGTATGT GCATCTGT TTATACATAC chr3L:22402934-22403054 74 5.10e-04 AAGTTGGCTC GCAGCAGG TACTCCGCAG chrX:19268779-19268899 71 5.10e-04 TTGTTCTGCC ACAGATGT TCTTGATGGC chrX:8063447-8063567 72 5.10e-04 AAAAAAGGGG ACAGATGT GCGGCCATTT chr3L:15163556-15163676 67 5.10e-04 GTACGGCCAA ACAGATGT TCGCTGTGGT chr2R:13194921-13195041 54 5.10e-04 TTCAGAACCG ACAGATGT CTGTCGATGT chr2L:2885198-2885318 56 5.56e-04 TGCAGCCCTA TCAGCTGT TCGCTGCGGC chr3R:31309369-31309489 43 5.56e-04 GTCAACCCAG TCAGCTGT AATTGATCAC chr2L:8163768-8163888 80 5.56e-04 CCGTGTATTT TCAGCTGT TGATCTATTT chr2L:19135054-19135174 11 5.71e-04 ACATGTACAC ACATCTGT TGTGCTTTGG chr2L:15751120-15751240 109 5.71e-04 CTAGGTCAAT ACATCTGT TTAT chr2L:4363875-4363995 17 5.71e-04 CCAAGCGAAA ACATCTGT CGTCCTCAAA chr3R:5107053-5107173 37 6.16e-04 ACAAATGAGC ACAGCAGG GCTCGCCGAG chr2R:7674345-7674465 12 6.77e-04 ACATAACCAA ACAGCTGA CTGCAGTGTT chr2R:9577958-9578078 99 6.77e-04 CTCTGGTTGG CCAGGTGC GATATGTTGT chr3R:26552386-26552506 53 6.77e-04 TGTGCGGCGC ACAGCTGA GCATCTTGTG chr3R:14569519-14569639 8 6.77e-04 CCGCCTA CCACCTGC TCATCGGCTG chr3R:18399592-18399712 57 7.36e-04 TAAAGTGTTA ACAGGTGG CTCCACGCAC chr3R:30200302-30200422 112 7.36e-04 TAAGCATTGC ACACCTGG C chr2L:17222229-17222349 28 7.36e-04 CCAGCACGAG ACACCTGG TGAACTCGGC chr2L:15435950-15436070 37 7.36e-04 ATAGCAACAG CCTGCTGC TGGGTGGCAT chrX:19751028-19751148 106 8.12e-04 TGTTCGACAA CCAGGTGT TTACATC chr3R:26035246-26035366 56 8.12e-04 ATTGACAAGA GCAGGAGC GAGGGAGAGG chr3L:19895726-19895846 74 8.42e-04 AAGCGAGACA ACTGCTGG TTTGATTGGC chrX:8650945-8651065 94 8.42e-04 GAGCGAGACA ACTGCTGG TGGTACCGTT chr3L:9446751-9446871 39 8.85e-04 GAAATAAAAT GCTGCAGC CCTGGAAAAA chr2R:24745992-24746112 2 8.85e-04 G GCTGCAGC GGGGTTCCGG chrX:19867075-19867195 13 8.85e-04 tgttgcacta gctgCAGC GGACCAACGG chr3L:5932579-5932699 26 8.85e-04 ATTCCCCGCC GCATCTGG CTATTAGCGA chr3R:20829243-20829363 63 9.94e-04 GAGACAGAGA GCACCAGT GACGAATTCT chr3L:6742368-6742488 53 9.94e-04 AAGCGGGACG GCACCAGT ACATTGAGCC chr3R:16234496-16234616 52 9.94e-04 GTCTTCATCG ACACCAGC ATCCAACATT chr2R:21090663-21090783 2 1.11e-03 C GCTCCTGC TGGCTCTGGC chr2L:10372620-10372740 99 1.11e-03 CCGACGACAG GCTGCAGT ACATCACATC chr2R:13569822-13569942 65 1.11e-03 TACATTGTAA ACATCTGG ACCGGAAAAT chr2R:13561101-13561221 60 1.20e-03 TGATCGTGGA GCACGTGT GTGTTGACAT chr2L:1362339-1362459 96 1.20e-03 TCTGCCAGCG CCATCTGT TGAGCGCTTT chr2L:6079049-6079169 102 1.20e-03 GGTTTGCGAT GCACGTGT TGGCGGTCAA chr2L:14517499-14517619 76 1.27e-03 GCATTCCCCT GCAGAAGT TTTCGGGGCC chr2R:21663178-21663298 49 1.37e-03 ATCTAGATCG CCAGCTGA ATAAACACGC chr2L:19867008-19867128 37 1.37e-03 CTACCTTTCC ACTGCAGT CGGTGTGAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:13060076-13060196 1.5e-05 83_[+1]_29 chr2L:18881402-18881522 1.5e-05 31_[+1]_81 chr2L:14234041-14234161 1.5e-05 110_[+1]_2 chrX:8058517-8058637 1.5e-05 11_[+1]_101 chr3R:25445966-25446086 1.5e-05 88_[+1]_24 chr3L:15554350-15554470 1.5e-05 45_[+1]_67 chr3R:7075125-7075245 1.5e-05 13_[+1]_99 chr2L:15492142-15492262 1.5e-05 6_[+1]_106 chr2R:21048276-21048396 1.5e-05 77_[+1]_35 chr3L:10659668-10659788 1.5e-05 100_[+1]_12 chrX:3779860-3779980 1.5e-05 83_[+1]_29 chr2R:10432462-10432582 1.5e-05 11_[+1]_101 chr3L:11123952-11124072 1.5e-05 68_[+1]_44 chr4:802852-802972 1.5e-05 44_[+1]_68 chr2L:13512942-13513062 1.5e-05 37_[+1]_75 chr3L:1420032-1420152 1.5e-05 24_[+1]_88 chr3L:10851582-10851702 1.5e-05 55_[+1]_57 chr3L:643455-643575 1.5e-05 48_[+1]_64 chr2R:21101590-21101710 1.5e-05 73_[+1]_39 chr2R:18672226-18672346 1.5e-05 52_[+1]_60 chr3R:7089604-7089724 1.5e-05 38_[+1]_74 chr2R:22408457-22408577 1.5e-05 56_[+1]_56 chr3L:16049224-16049344 1.5e-05 20_[+1]_92 chrX:16782175-16782295 4.5e-05 35_[+1]_77 chr3R:10868519-10868639 4.5e-05 66_[+1]_46 chr3R:29148219-29148339 4.5e-05 101_[+1]_11 chr3L:6743714-6743834 4.5e-05 16_[+1]_96 chr3R:7037483-7037603 4.5e-05 44_[+1]_68 chr2R:17091846-17091966 4.5e-05 93_[+1]_19 chr2L:15425745-15425865 4.5e-05 28_[+1]_84 chr2R:6133373-6133493 4.5e-05 103_[+1]_9 chrX:18775089-18775209 4.5e-05 24_[+1]_88 chrX:15063828-15063948 4.5e-05 63_[+1]_49 chr2R:6573554-6573674 4.5e-05 16_[+1]_96 chr2R:9694830-9694950 4.5e-05 87_[+1]_25 chr3R:9226956-9227076 4.5e-05 15_[+1]_97 chr2L:7811814-7811934 4.5e-05 39_[+1]_73 chr3L:7370468-7370588 4.5e-05 112_[+1] chr2R:11529692-11529812 4.5e-05 63_[+1]_49 chr2R:7486507-7486627 4.5e-05 20_[+1]_92 chr3R:16282239-16282359 4.5e-05 26_[+1]_86 chr3L:7984845-7984965 4.5e-05 67_[+1]_45 chr2R:20600804-20600924 4.5e-05 12_[+1]_100 chr3R:21580178-21580298 4.5e-05 69_[+1]_43 chr3L:10674981-10675101 4.5e-05 40_[+1]_72 chr3L:5152566-5152686 4.5e-05 83_[+1]_29 chr3L:21476640-21476760 4.5e-05 46_[+1]_66 chr3L:20517586-20517706 4.5e-05 60_[+1]_52 chr3L:10858814-10858934 4.5e-05 70_[+1]_42 chr2R:13188085-13188205 4.5e-05 3_[+1]_109 chr3R:31794634-31794754 4.5e-05 97_[+1]_15 chr2R:11045833-11045953 4.5e-05 100_[+1]_12 chr3R:23922316-23922436 4.5e-05 92_[+1]_20 chr2L:19155111-19155231 4.5e-05 86_[+1]_26 chrX:21368522-21368642 4.5e-05 49_[+1]_63 chr3L:7156332-7156452 4.5e-05 68_[+1]_44 chr3R:9024993-9025113 4.5e-05 20_[+1]_92 chr3R:26040075-26040195 4.5e-05 11_[+1]_101 chr3R:25596554-25596674 4.5e-05 15_[+1]_97 chr2R:24402712-24402832 6e-05 93_[+1]_19 chr2R:16828915-16829035 6e-05 71_[+1]_41 chr2L:14490115-14490235 6e-05 55_[+1]_57 chr3R:7000781-7000901 6e-05 36_[+1]_76 chr2R:12776154-12776274 6e-05 33_[+1]_79 chr3R:7105731-7105851 6e-05 92_[+1]_20 chr3R:18923862-18923982 6e-05 100_[+1]_12 chr3R:9144411-9144531 6e-05 64_[+1]_48 chr2L:5245635-5245755 7.5e-05 90_[+1]_22 chr3L:20402804-20402924 7.5e-05 75_[+1]_37 chr2R:8655383-8655503 7.5e-05 30_[+1]_82 chr2R:17477103-17477223 7.5e-05 41_[+1]_71 chr3L:12693015-12693135 7.5e-05 37_[+1]_75 chr3L:22054972-22055092 7.5e-05 48_[+1]_64 chr3L:19682987-19683107 7.5e-05 15_[+1]_97 chr2R:6961577-6961697 7.5e-05 90_[+1]_22 chr2R:24086624-24086744 9e-05 100_[+1]_12 chr2L:22018890-22019010 9e-05 35_[+1]_77 chr3R:4453695-4453815 9e-05 54_[+1]_58 chr2L:6081393-6081513 9e-05 89_[+1]_23 chr3R:19092581-19092701 9e-05 3_[+1]_109 chr3R:22041761-22041881 9e-05 43_[+1]_69 chr3L:20472927-20473047 9e-05 53_[+1]_59 chr3R:5021626-5021746 0.0001 52_[+1]_60 chrX:3137905-3138025 0.0001 10_[+1]_102 chr2R:24279811-24279931 0.0001 6_[+1]_106 chr2L:12027264-12027384 0.00014 112_[+1] chr2R:12274356-12274476 0.00014 22_[+1]_90 chr3R:18298358-18298478 0.00014 79_[+1]_33 chr3R:16255326-16255446 0.00014 64_[+1]_48 chr2R:11096398-11096518 0.00014 94_[+1]_18 chr3R:12648012-12648132 0.00014 3_[+1]_109 chr3L:8347504-8347624 0.00014 50_[+1]_62 chr3L:742632-742752 0.00014 110_[+1]_2 chr3L:11253788-11253908 0.00014 73_[+1]_39 chr3R:6992029-6992149 0.00014 48_[+1]_64 chr2R:20836482-20836602 0.00014 57_[+1]_55 chr2R:17476230-17476350 0.00014 61_[+1]_51 chrX:7604540-7604660 0.0002 70_[+1]_42 chr2L:18567697-18567817 0.0002 42_[+1]_70 chr2L:18150626-18150746 0.0002 84_[+1]_28 chrX:14627251-14627371 0.0002 2_[+1]_110 chr3R:13837940-13838060 0.0002 102_[+1]_10 chr2R:23573225-23573345 0.0002 52_[+1]_60 chr3R:14017780-14017900 0.0002 76_[+1]_36 chr3R:12986170-12986290 0.0002 74_[+1]_38 chr3L:10898203-10898323 0.0002 28_[+1]_84 chr3L:21216815-21216935 0.0002 67_[+1]_45 chr2L:3094968-3095088 0.0002 89_[+1]_23 chr3R:11877291-11877411 0.0002 4_[+1]_108 chr3L:15847277-15847397 0.0002 70_[+1]_42 chr3L:8689836-8689956 0.00021 70_[+1]_42 chrX:2136482-2136602 0.00029 50_[+1]_62 chr3R:26018280-26018400 0.00029 9_[+1]_103 chr3R:27239068-27239188 0.00029 97_[+1]_15 chrX:2073440-2073560 0.00029 66_[+1]_46 chr2L:6722964-6723084 0.00029 3_[+1]_109 chr3L:14131760-14131880 0.00029 51_[+1]_61 chr3R:26002547-26002667 0.00029 106_[+1]_6 chr3L:17653297-17653417 0.00029 11_[+1]_101 chr3R:26030628-26030748 0.00029 14_[+1]_98 chr3R:26024705-26024825 0.00029 110_[+1]_2 chr3R:24870834-24870954 0.0003 14_[+1]_98 chr2R:12970723-12970843 0.0003 55_[+1]_57 chr2L:14497805-14497925 0.00033 73_[+1]_39 chr3R:26006038-26006158 0.00033 85_[+1]_27 chr2R:20846072-20846192 0.00033 69_[+1]_43 chr2L:9938748-9938868 0.00037 13_[+1]_99 chrX:8924921-8925041 0.00037 102_[+1]_10 chr3L:774706-774826 0.00037 62_[+1]_50 chr3L:21196722-21196842 0.00042 66_[+1]_46 chr3R:25626845-25626965 0.00042 76_[+1]_36 chr3R:19934986-19935106 0.00042 52_[+1]_60 chrX:21281305-21281425 0.00042 47_[+1]_65 chr3L:815934-816054 0.00042 73_[+1]_39 chr3L:13674771-13674891 0.00045 75_[+1]_37 chr2L:16271569-16271689 0.00045 54_[+1]_58 chr3R:27148994-27149114 0.00048 5_[+1]_107 chr2R:19436944-19437064 0.00048 88_[+1]_24 chr3L:22402934-22403054 0.00051 73_[+1]_39 chrX:19268779-19268899 0.00051 70_[+1]_42 chrX:8063447-8063567 0.00051 71_[+1]_41 chr3L:15163556-15163676 0.00051 66_[+1]_46 chr2R:13194921-13195041 0.00051 53_[+1]_59 chr2L:2885198-2885318 0.00056 55_[+1]_57 chr3R:31309369-31309489 0.00056 42_[+1]_70 chr2L:8163768-8163888 0.00056 79_[+1]_33 chr2L:19135054-19135174 0.00057 10_[+1]_102 chr2L:15751120-15751240 0.00057 108_[+1]_4 chr2L:4363875-4363995 0.00057 16_[+1]_96 chr3R:5107053-5107173 0.00062 36_[+1]_76 chr2R:7674345-7674465 0.00068 11_[+1]_101 chr2R:9577958-9578078 0.00068 98_[+1]_14 chr3R:26552386-26552506 0.00068 52_[+1]_60 chr3R:14569519-14569639 0.00068 7_[+1]_105 chr3R:18399592-18399712 0.00074 56_[+1]_56 chr3R:30200302-30200422 0.00074 111_[+1]_1 chr2L:17222229-17222349 0.00074 27_[+1]_85 chr2L:15435950-15436070 0.00074 36_[+1]_76 chrX:19751028-19751148 0.00081 105_[+1]_7 chr3R:26035246-26035366 0.00081 55_[+1]_57 chr3L:19895726-19895846 0.00084 73_[+1]_39 chrX:8650945-8651065 0.00084 93_[+1]_19 chr3L:9446751-9446871 0.00088 38_[+1]_74 chr2R:24745992-24746112 0.00088 1_[+1]_111 chrX:19867075-19867195 0.00088 12_[+1]_100 chr3L:5932579-5932699 0.00088 25_[+1]_87 chr3R:20829243-20829363 0.00099 62_[+1]_50 chr3L:6742368-6742488 0.00099 52_[+1]_60 chr3R:16234496-16234616 0.00099 51_[+1]_61 chr2R:21090663-21090783 0.0011 1_[+1]_111 chr2L:10372620-10372740 0.0011 98_[+1]_14 chr2R:13569822-13569942 0.0011 64_[+1]_48 chr2R:13561101-13561221 0.0012 59_[+1]_53 chr2L:1362339-1362459 0.0012 95_[+1]_17 chr2L:6079049-6079169 0.0012 101_[+1]_11 chr2L:14517499-14517619 0.0013 75_[+1]_37 chr2R:21663178-21663298 0.0014 48_[+1]_64 chr2L:19867008-19867128 0.0014 36_[+1]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCAGCTGY width=8 seqs=178 chr2L:13060076-13060196 ( 84) GCAGCTGC 1 chr2L:18881402-18881522 ( 32) GCAGCTGC 1 chr2L:14234041-14234161 ( 111) GCAGCTGC 1 chrX:8058517-8058637 ( 12) GCAGCTGC 1 chr3R:25445966-25446086 ( 89) GCAGCTGC 1 chr3L:15554350-15554470 ( 46) GCAGCTGC 1 chr3R:7075125-7075245 ( 14) GCAGCTGC 1 chr2L:15492142-15492262 ( 7) GCAGCTGC 1 chr2R:21048276-21048396 ( 78) GCAGCTGC 1 chr3L:10659668-10659788 ( 101) GCAGCTGC 1 chrX:3779860-3779980 ( 84) GCAGCTGC 1 chr2R:10432462-10432582 ( 12) GCAGCTGC 1 chr3L:11123952-11124072 ( 69) GCAGCTGC 1 chr4:802852-802972 ( 45) GCAGCTGC 1 chr2L:13512942-13513062 ( 38) GCAGCTGC 1 chr3L:1420032-1420152 ( 25) GCAGCTGC 1 chr3L:10851582-10851702 ( 56) GCAGCTGC 1 chr3L:643455-643575 ( 49) GCAGCTGC 1 chr2R:21101590-21101710 ( 74) GCAGCTGC 1 chr2R:18672226-18672346 ( 53) GCAGCTGC 1 chr3R:7089604-7089724 ( 39) GCAGCTGC 1 chr2R:22408457-22408577 ( 57) GCAGCTGC 1 chr3L:16049224-16049344 ( 21) GCAGCTGC 1 chrX:16782175-16782295 ( 36) ACAGCTGC 1 chr3R:10868519-10868639 ( 67) ACAGCTGC 1 chr3R:29148219-29148339 ( 102) ACAGCTGC 1 chr3L:6743714-6743834 ( 17) GCAGCTGT 1 chr3R:7037483-7037603 ( 45) GCAGCTGT 1 chr2R:17091846-17091966 ( 94) GCAGCTGT 1 chr2L:15425745-15425865 ( 29) ACAGCTGC 1 chr2R:6133373-6133493 ( 104) ACAGCTGC 1 chrX:18775089-18775209 ( 25) ACAGCTGC 1 chrX:15063828-15063948 ( 64) GCAGCTGT 1 chr2R:6573554-6573674 ( 17) ACAGCTGC 1 chr2R:9694830-9694950 ( 88) ACAGCTGC 1 chr3R:9226956-9227076 ( 16) GCAGCTGT 1 chr2L:7811814-7811934 ( 40) ACAGCTGC 1 chr3L:7370468-7370588 ( 113) ACAGCTGC 1 chr2R:11529692-11529812 ( 64) GCAGCTGT 1 chr2R:7486507-7486627 ( 21) GCAGCTGT 1 chr3R:16282239-16282359 ( 27) ACAGCTGC 1 chr3L:7984845-7984965 ( 68) ACAGCTGC 1 chr2R:20600804-20600924 ( 13) ACAGCTGC 1 chr3R:21580178-21580298 ( 70) ACAGCTGC 1 chr3L:10674981-10675101 ( 41) GCAGCTGT 1 chr3L:5152566-5152686 ( 84) ACAGCTGC 1 chr3L:21476640-21476760 ( 47) ACAGCTGC 1 chr3L:20517586-20517706 ( 61) GCAGCTGT 1 chr3L:10858814-10858934 ( 71) ACAGCTGC 1 chr2R:13188085-13188205 ( 4) ACAGCTGC 1 chr3R:31794634-31794754 ( 98) ACAGCTGC 1 chr2R:11045833-11045953 ( 101) ACAGCTGC 1 chr3R:23922316-23922436 ( 93) GCAGCTGT 1 chr2L:19155111-19155231 ( 87) ACAGCTGC 1 chrX:21368522-21368642 ( 50) ACAGCTGC 1 chr3L:7156332-7156452 ( 69) ACAGCTGC 1 chr3R:9024993-9025113 ( 21) GCAGCTGT 1 chr3R:26040075-26040195 ( 12) GCAGCTGT 1 chr3R:25596554-25596674 ( 16) GCAGCTGT 1 chr2R:24402712-24402832 ( 94) ACAGCTGT 1 chr2R:16828915-16829035 ( 72) ACAGCTGT 1 chr2L:14490115-14490235 ( 56) ACAGCTGT 1 chr3R:7000781-7000901 ( 37) ACAGCTGT 1 chr2R:12776154-12776274 ( 34) ACAGCTGT 1 chr3R:7105731-7105851 ( 93) ACAGCTGT 1 chr3R:18923862-18923982 ( 101) ACAGCTGT 1 chr3R:9144411-9144531 ( 65) ACAGCTGT 1 chr2L:5245635-5245755 ( 91) GCAGCTGG 1 chr3L:20402804-20402924 ( 76) GCAGCTGG 1 chr2R:8655383-8655503 ( 31) GCAGCTGG 1 chr2R:17477103-17477223 ( 42) GCAGCTGG 1 chr3L:12693015-12693135 ( 38) GCAGCTGG 1 chr3L:22054972-22055092 ( 49) GCAGCTGG 1 chr3L:19682987-19683107 ( 16) GCAGCTGG 1 chr2R:6961577-6961697 ( 91) GCAGCTGG 1 chr2R:24086624-24086744 ( 101) CCAGCTGC 1 chr2L:22018890-22019010 ( 36) CCAGCTGC 1 chr3R:4453695-4453815 ( 55) CCAGCTGC 1 chr2L:6081393-6081513 ( 90) CCAGCTGC 1 chr3R:19092581-19092701 ( 4) CCAGCTGC 1 chr3R:22041761-22041881 ( 44) CCAGCTGC 1 chr3L:20472927-20473047 ( 54) CCAGCTGC 1 chr3R:5021626-5021746 ( 53) ACAGCTGG 1 chrX:3137905-3138025 ( 11) ACAGCTGG 1 chr2R:24279811-24279931 ( 7) ACAGCTGG 1 chr2L:12027264-12027384 ( 113) GCAGCAGC 1 chr2R:12274356-12274476 ( 23) GCAGCAGC 1 chr3R:18298358-18298478 ( 80) GCAGCAGC 1 chr3R:16255326-16255446 ( 65) GCAGCAGC 1 chr2R:11096398-11096518 ( 95) CCAGCTGT 1 chr3R:12648012-12648132 ( 4) GCAGCAGC 1 chr3L:8347504-8347624 ( 51) CCAGCTGT 1 chr3L:742632-742752 ( 111) CCAGCTGT 1 chr3L:11253788-11253908 ( 74) GCAGCAGC 1 chr3R:6992029-6992149 ( 49) CCAGCTGT 1 chr2R:20836482-20836602 ( 58) CCAGCTGT 1 chr2R:17476230-17476350 ( 62) GCAGCAGC 1 chrX:7604540-7604660 ( 71) GCACCTGC 1 chr2L:18567697-18567817 ( 43) ACAGCAGC 1 chr2L:18150626-18150746 ( 85) ACAGCAGC 1 chrX:14627251-14627371 ( 3) ACAGCAGC 1 chr3R:13837940-13838060 ( 103) GCACCTGC 1 chr2R:23573225-23573345 ( 53) ACAGCAGC 1 chr3R:14017780-14017900 ( 77) ACAGCAGC 1 chr3R:12986170-12986290 ( 75) GCACCTGC 1 chr3L:10898203-10898323 ( 29) GCAGGTGC 1 chr3L:21216815-21216935 ( 68) GCAGCAGT 1 chr2L:3094968-3095088 ( 90) GCAGGTGC 1 chr3R:11877291-11877411 ( 5) GCAGGTGC 1 chr3L:15847277-15847397 ( 71) GCAGGTGC 1 chr3L:8689836-8689956 ( 71) GCTGCTGC 1 chrX:2136482-2136602 ( 51) GCACCTGT 1 chr3R:26018280-26018400 ( 10) GCACCTGT 1 chr3R:27239068-27239188 ( 98) GCAGGTGT 1 chrX:2073440-2073560 ( 67) GCAGGTGT 1 chr2L:6722964-6723084 ( 4) ACACCTGC 1 chr3L:14131760-14131880 ( 52) GCAGGTGT 1 chr3R:26002547-26002667 ( 107) ACACCTGC 1 chr3L:17653297-17653417 ( 12) GCAGGTGT 1 chr3R:26030628-26030748 ( 15) ACACCTGC 1 chr3R:26024705-26024825 ( 111) GCACCTGT 1 chr3R:24870834-24870954 ( 15) GCAGATGC 1 chr2R:12970723-12970843 ( 56) GCAGATGC 1 chr2L:14497805-14497925 ( 74) GCTGCTGT 1 chr3R:26006038-26006158 ( 86) GCTGCTGT 1 chr2R:20846072-20846192 ( 70) ACTGCTGC 1 chr2L:9938748-9938868 ( 14) ACAGGTGT 1 chrX:8924921-8925041 ( 103) ACAGGTGT 1 chr3L:774706-774826 ( 63) GCATCTGC 1 chr3L:21196722-21196842 ( 67) CCAGCTGG 1 chr3R:25626845-25626965 ( 77) GCAGATGT 1 chr3R:19934986-19935106 ( 53) CCAGCTGG 1 chrX:21281305-21281425 ( 48) GCAGATGT 1 chr3L:815934-816054 ( 74) ACAGATGC 1 chr3L:13674771-13674891 ( 76) ACTGCTGT 1 chr2L:16271569-16271689 ( 55) TCAGCTGC 1 chr3R:27148994-27149114 ( 6) ACATCTGC 1 chr2R:19436944-19437064 ( 89) GCATCTGT 1 chr3L:22402934-22403054 ( 74) GCAGCAGG 1 chrX:19268779-19268899 ( 71) ACAGATGT 1 chrX:8063447-8063567 ( 72) ACAGATGT 1 chr3L:15163556-15163676 ( 67) ACAGATGT 1 chr2R:13194921-13195041 ( 54) ACAGATGT 1 chr2L:2885198-2885318 ( 56) TCAGCTGT 1 chr3R:31309369-31309489 ( 43) TCAGCTGT 1 chr2L:8163768-8163888 ( 80) TCAGCTGT 1 chr2L:19135054-19135174 ( 11) ACATCTGT 1 chr2L:15751120-15751240 ( 109) ACATCTGT 1 chr2L:4363875-4363995 ( 17) ACATCTGT 1 chr3R:5107053-5107173 ( 37) ACAGCAGG 1 chr2R:7674345-7674465 ( 12) ACAGCTGA 1 chr2R:9577958-9578078 ( 99) CCAGGTGC 1 chr3R:26552386-26552506 ( 53) ACAGCTGA 1 chr3R:14569519-14569639 ( 8) CCACCTGC 1 chr3R:18399592-18399712 ( 57) ACAGGTGG 1 chr3R:30200302-30200422 ( 112) ACACCTGG 1 chr2L:17222229-17222349 ( 28) ACACCTGG 1 chr2L:15435950-15436070 ( 37) CCTGCTGC 1 chrX:19751028-19751148 ( 106) CCAGGTGT 1 chr3R:26035246-26035366 ( 56) GCAGGAGC 1 chr3L:19895726-19895846 ( 74) ACTGCTGG 1 chrX:8650945-8651065 ( 94) ACTGCTGG 1 chr3L:9446751-9446871 ( 39) GCTGCAGC 1 chr2R:24745992-24746112 ( 2) GCTGCAGC 1 chrX:19867075-19867195 ( 13) GCTGCAGC 1 chr3L:5932579-5932699 ( 26) GCATCTGG 1 chr3R:20829243-20829363 ( 63) GCACCAGT 1 chr3L:6742368-6742488 ( 53) GCACCAGT 1 chr3R:16234496-16234616 ( 52) ACACCAGC 1 chr2R:21090663-21090783 ( 2) GCTCCTGC 1 chr2L:10372620-10372740 ( 99) GCTGCAGT 1 chr2R:13569822-13569942 ( 65) ACATCTGG 1 chr2R:13561101-13561221 ( 60) GCACGTGT 1 chr2L:1362339-1362459 ( 96) CCATCTGT 1 chr2L:6079049-6079169 ( 102) GCACGTGT 1 chr2L:14517499-14517619 ( 76) GCAGAAGT 1 chr2R:21663178-21663298 ( 49) CCAGCTGA 1 chr2L:19867008-19867128 ( 37) ACTGCAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.3419 E= 3.4e-111 52 -116 100 -344 -1412 200 -1412 -1412 183 -1412 -1412 -163 -1412 -131 178 -227 -220 177 -146 -1412 -88 -1412 -1412 182 -1412 -1412 202 -1412 -394 105 -100 49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 178 E= 3.4e-111 0.370787 0.112360 0.494382 0.022472 0.000000 1.000000 0.000000 0.000000 0.921348 0.000000 0.000000 0.078652 0.000000 0.101124 0.848315 0.050562 0.056180 0.853933 0.089888 0.000000 0.140449 0.000000 0.000000 0.859551 0.000000 0.000000 1.000000 0.000000 0.016854 0.516854 0.123596 0.342697 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-1 regular expression -------------------------------------------------------------------------------- [GA]CAGCTG[CT] -------------------------------------------------------------------------------- Time 8.71 secs. ******************************************************************************** ******************************************************************************** MOTIF TKTTGTTT MEME-2 width = 8 sites = 70 llr = 541 E-value = 4.7e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKTTGTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3::::::1 pos.-specific C 1:3::::: probability G :5::8::2 matrix T 657a2aa7 bits 2.0 * ** 1.8 * ** 1.6 * ** 1.4 **** Relative 1.2 ***** Entropy 1.0 ****** (11.1 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTGTTT consensus AGC G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTGTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16782175-16782295 93 1.27e-05 TTTTGTCAGA TTTTGTTT AATATGCGTA chr2L:8163768-8163888 19 1.27e-05 CCCCGCTGGC TTTTGTTT GACTTTCCTG chr2R:24745992-24746112 49 1.27e-05 GGTGGGCGCC TTTTGTTT CGCAGACAGC chrX:10802259-10802379 111 1.27e-05 AATTTTACAT TTTTGTTT TT chr2L:3114254-3114374 14 1.27e-05 ACAATCATAC TTTTGTTT GTCACATTCT chr2R:10432462-10432582 105 1.27e-05 CACTGGTGGT TTTTGTTT TTCATAAC chr3L:6904142-6904262 17 1.27e-05 ATAGCAGCCA TTTTGTTT AGTGTCATCT chrX:8063447-8063567 92 2.56e-05 GGCCATTTGC TGTTGTTT GTTGTTGCAA chr2R:11096398-11096518 49 2.56e-05 TGCGGAATGG TGTTGTTT GCTTTTGCCA chr2L:377955-378075 110 2.56e-05 TCCAACCGGT TGTTGTTT CAG chr2L:15435950-15436070 97 2.56e-05 AGGCACCCGG TGTTGTTT GGCTGTTTGG chrX:21281305-21281425 71 2.56e-05 GCGTGGATTT TGTTGTTT TGATTTTTTG chr3R:6992029-6992149 4 2.56e-05 TTT TGTTGTTT ACAACCATCC chr2L:5245635-5245755 61 3.90e-05 TGCCACTTCA ATTTGTTT ACAACAAGTT chrX:656138-656258 14 3.90e-05 TATCGGTGTA ATTTGTTT TCAGAGAAAT chr2R:23567344-23567464 10 3.90e-05 AGTTGCTCC ATTTGTTT GTTTGTATTC chr2R:6133373-6133493 78 3.90e-05 CTCTACTTCT ATTTGTTT GGGTATACCA chr2L:7157429-7157549 109 3.90e-05 TTGTGCAATG ATTTGTTT GTTT chr3L:1420032-1420152 52 3.90e-05 GCTCGTTTTA ATTTGTTT GTTTACATTT chr3R:21161762-21161882 87 7.86e-05 CCATTTAGCA TTTTGTTG GCACTGCCTT chr3L:12693015-12693135 86 7.86e-05 TAGATACTTT TTTTGTTG CCCCCACCCC chr2L:7811814-7811934 84 7.86e-05 TCCCTGCCTA TTCTGTTT CTGTCTTGAG chrX:17160582-17160702 109 7.86e-05 CTAGACCAAC TTTTGTTG CAGC chr2R:20836482-20836602 5 7.86e-05 GCGC TTTTGTTG CTATTTCTTA chr3L:6743714-6743834 76 1.05e-04 TGCTAGTGTG TGTTGTTG CTTCACACGC chr3L:19895726-19895846 109 1.05e-04 CGACTCttgc tgttgttg ttat chrX:18775089-18775209 12 1.05e-04 CTGTCGCACC TGCTGTTT GTCTAACAGC chr3R:9226956-9227076 56 1.05e-04 CAACAATTTA TGCTGTTT AAAAAGAGCA chrX:3137905-3138025 112 1.05e-04 GCGTCCTTTT TGCTGTTT G chr3R:26552386-26552506 69 1.05e-04 GAGCATCTTG TGCTGTTT TGTGTGGCAT chr2R:6971013-6971133 3 1.05e-04 GT TGTTGTTG TTCTAGCATT chr2R:13569822-13569942 22 1.05e-04 TGGCACGTTC TGCTGTTT TTCCTGTTTG chr2L:19155111-19155231 65 1.05e-04 CAgtagttgt tgttgttg ttgctgctct chr3L:2881778-2881898 17 1.05e-04 ttgttgttgc tgttgttg cttttgatgc chrX:19268779-19268899 51 1.17e-04 AGTATTTTCC TTTTTTTT ATTTGTTCTG chr2R:12916481-12916601 102 1.17e-04 CTCATGGAGT TTTTTTTT TCTTCCATTC chr2L:3094968-3095088 1 1.17e-04 . TTTTTTTT TGTGTGCTGC chr2R:13188085-13188205 31 1.17e-04 AGGTTTTCTT TTTTTTTT TTAATGGGCG chr2L:14497805-14497925 89 1.30e-04 TGTTAGCCTG CTTTGTTT TAATATTTAT chr3L:5152566-5152686 74 1.30e-04 CGATAGCGGG CTTTGTTT TGACAGCTGC chr3L:742632-742752 17 1.30e-04 TTCGGCTTGC CTTTGTTT CTGCCTGCCT chr2R:20067270-20067390 2 1.97e-04 A TTTTGTTA TATGTATACT chr2R:7674345-7674465 83 1.97e-04 GTTTTTGGTA TTTTGTTA TCGACAGCGC chr2R:22657045-22657165 94 1.97e-04 CCAGTTGTTC ATCTGTTT GTCAAGCCCC chr3L:21196722-21196842 40 1.97e-04 TGTTGCCAAT CGTTGTTT ACTTACGCGT chr2L:15432368-15432488 90 1.97e-04 CGTGTTGTTC TTTTGTTA TTTTTGTCTT chr4:802852-802972 31 1.97e-04 TGGCTGCTAT TTTTGTTA TTGTTGGCAG chr2R:21282401-21282521 9 2.52e-04 GTGGCTAA AGCTGTTT TTCAATGTCG chr2L:9938748-9938868 65 2.52e-04 GTGCTTTTCT AGCTGTTT CCCTCTTTTG chr2L:14517499-14517619 41 2.52e-04 TGTCGCTGGT AGCTGTTT TGCTGTGACA chr2L:4363875-4363995 93 2.52e-04 GTCCTTTTCA TGTTGTTA CAGGCGTCGT chr3L:11123952-11124072 28 2.52e-04 TTTCGTGTGC AGCTGTTT TCGAGTCTCT chr3L:643455-643575 57 2.52e-04 TGGCAGCTGC AGCTGTTT CTTCCCCACT chr2R:24275478-24275598 51 2.52e-04 ctgccctgcc AGTTGTTG TGCCCCTCGA chr3R:21580178-21580298 78 2.65e-04 tgacagctgc tgctgttg ctactgctat chr2L:13512942-13513062 76 2.65e-04 CCGCTGCTGC TGCTGTTG CGACCCCGTT chr3L:16770008-16770128 58 2.78e-04 AGGCAACAGC ATTTTTTT CCGGCCGCAA chrX:2136482-2136602 26 3.17e-04 GCAGGCACTT TTCTTTTT CTCAGTGTAA chr2R:22670702-22670822 101 3.17e-04 AATTGCAGAA AGTTTTTT TCACAACAAA chr3R:8801399-8801519 52 3.17e-04 ATAAATAGAT AGTTTTTT ATGAGTTAGG chr3L:10674981-10675101 16 3.17e-04 CTCGACCTGC AGTTTTTT CGCTGCTATT chr3R:31309369-31309489 11 3.58e-04 GAGTCAACGA CTCTGTTT GTATCTGCGA chrX:6678192-6678312 60 3.58e-04 CAGATTTTAA ATTTGTTA GCTATGGAAT chr3R:22041761-22041881 56 3.58e-04 AGCTGCGCAA CTCTGTTT GTGCGGAGTG chr3R:9024993-9025113 62 3.58e-04 CTTTTGCAGC CTTTGTTG TGCGGAGGAA chr3L:10659668-10659788 42 4.81e-04 AAGATATAGC AGCTGTTG CACCTGTTGT chr3R:25626845-25626965 60 5.47e-04 TGCCAACTCG TTTTTTTA CTATCAACAG chr3L:5932579-5932699 100 5.61e-04 GTTAGTACAT CTTTGTTA TCTTTGCACT chr3R:7105731-7105851 52 6.15e-04 TTTCGGGATA AGTTTTTG CCCTCTGAAG chr3L:815934-816054 111 6.70e-04 GATCACGGAC TGCTTTTg ga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTGTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16782175-16782295 1.3e-05 92_[+2]_20 chr2L:8163768-8163888 1.3e-05 18_[+2]_94 chr2R:24745992-24746112 1.3e-05 48_[+2]_64 chrX:10802259-10802379 1.3e-05 110_[+2]_2 chr2L:3114254-3114374 1.3e-05 13_[+2]_99 chr2R:10432462-10432582 1.3e-05 104_[+2]_8 chr3L:6904142-6904262 1.3e-05 16_[+2]_96 chrX:8063447-8063567 2.6e-05 91_[+2]_21 chr2R:11096398-11096518 2.6e-05 48_[+2]_64 chr2L:377955-378075 2.6e-05 109_[+2]_3 chr2L:15435950-15436070 2.6e-05 96_[+2]_16 chrX:21281305-21281425 2.6e-05 70_[+2]_42 chr3R:6992029-6992149 2.6e-05 3_[+2]_109 chr2L:5245635-5245755 3.9e-05 60_[+2]_52 chrX:656138-656258 3.9e-05 13_[+2]_99 chr2R:23567344-23567464 3.9e-05 9_[+2]_103 chr2R:6133373-6133493 3.9e-05 77_[+2]_35 chr2L:7157429-7157549 3.9e-05 108_[+2]_4 chr3L:1420032-1420152 3.9e-05 51_[+2]_61 chr3R:21161762-21161882 7.9e-05 86_[+2]_26 chr3L:12693015-12693135 7.9e-05 85_[+2]_27 chr2L:7811814-7811934 7.9e-05 83_[+2]_29 chrX:17160582-17160702 7.9e-05 108_[+2]_4 chr2R:20836482-20836602 7.9e-05 4_[+2]_108 chr3L:6743714-6743834 0.0001 75_[+2]_37 chr3L:19895726-19895846 0.0001 108_[+2]_4 chrX:18775089-18775209 0.0001 11_[+2]_101 chr3R:9226956-9227076 0.0001 55_[+2]_57 chrX:3137905-3138025 0.0001 111_[+2]_1 chr3R:26552386-26552506 0.0001 68_[+2]_44 chr2R:6971013-6971133 0.0001 2_[+2]_110 chr2R:13569822-13569942 0.0001 21_[+2]_91 chr2L:19155111-19155231 0.0001 64_[+2]_48 chr3L:2881778-2881898 0.0001 16_[+2]_96 chrX:19268779-19268899 0.00012 50_[+2]_62 chr2R:12916481-12916601 0.00012 101_[+2]_11 chr2L:3094968-3095088 0.00012 [+2]_112 chr2R:13188085-13188205 0.00012 30_[+2]_82 chr2L:14497805-14497925 0.00013 88_[+2]_24 chr3L:5152566-5152686 0.00013 73_[+2]_39 chr3L:742632-742752 0.00013 16_[+2]_96 chr2R:20067270-20067390 0.0002 1_[+2]_111 chr2R:7674345-7674465 0.0002 82_[+2]_30 chr2R:22657045-22657165 0.0002 93_[+2]_19 chr3L:21196722-21196842 0.0002 39_[+2]_73 chr2L:15432368-15432488 0.0002 89_[+2]_23 chr4:802852-802972 0.0002 30_[+2]_82 chr2R:21282401-21282521 0.00025 8_[+2]_104 chr2L:9938748-9938868 0.00025 64_[+2]_48 chr2L:14517499-14517619 0.00025 40_[+2]_72 chr2L:4363875-4363995 0.00025 92_[+2]_20 chr3L:11123952-11124072 0.00025 27_[+2]_85 chr3L:643455-643575 0.00025 56_[+2]_56 chr2R:24275478-24275598 0.00025 50_[+2]_62 chr3R:21580178-21580298 0.00027 77_[+2]_35 chr2L:13512942-13513062 0.00027 75_[+2]_37 chr3L:16770008-16770128 0.00028 57_[+2]_55 chrX:2136482-2136602 0.00032 25_[+2]_87 chr2R:22670702-22670822 0.00032 100_[+2]_12 chr3R:8801399-8801519 0.00032 51_[+2]_61 chr3L:10674981-10675101 0.00032 15_[+2]_97 chr3R:31309369-31309489 0.00036 10_[+2]_102 chrX:6678192-6678312 0.00036 59_[+2]_53 chr3R:22041761-22041881 0.00036 55_[+2]_57 chr3R:9024993-9025113 0.00036 61_[+2]_51 chr3L:10659668-10659788 0.00048 41_[+2]_71 chr3R:25626845-25626965 0.00055 59_[+2]_53 chr3L:5932579-5932699 0.00056 99_[+2]_13 chr3R:7105731-7105851 0.00061 51_[+2]_61 chr3L:815934-816054 0.00067 110_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTGTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKTTGTTT width=8 seqs=70 chrX:16782175-16782295 ( 93) TTTTGTTT 1 chr2L:8163768-8163888 ( 19) TTTTGTTT 1 chr2R:24745992-24746112 ( 49) TTTTGTTT 1 chrX:10802259-10802379 ( 111) TTTTGTTT 1 chr2L:3114254-3114374 ( 14) TTTTGTTT 1 chr2R:10432462-10432582 ( 105) TTTTGTTT 1 chr3L:6904142-6904262 ( 17) TTTTGTTT 1 chrX:8063447-8063567 ( 92) TGTTGTTT 1 chr2R:11096398-11096518 ( 49) TGTTGTTT 1 chr2L:377955-378075 ( 110) TGTTGTTT 1 chr2L:15435950-15436070 ( 97) TGTTGTTT 1 chrX:21281305-21281425 ( 71) TGTTGTTT 1 chr3R:6992029-6992149 ( 4) TGTTGTTT 1 chr2L:5245635-5245755 ( 61) ATTTGTTT 1 chrX:656138-656258 ( 14) ATTTGTTT 1 chr2R:23567344-23567464 ( 10) ATTTGTTT 1 chr2R:6133373-6133493 ( 78) ATTTGTTT 1 chr2L:7157429-7157549 ( 109) ATTTGTTT 1 chr3L:1420032-1420152 ( 52) ATTTGTTT 1 chr3R:21161762-21161882 ( 87) TTTTGTTG 1 chr3L:12693015-12693135 ( 86) TTTTGTTG 1 chr2L:7811814-7811934 ( 84) TTCTGTTT 1 chrX:17160582-17160702 ( 109) TTTTGTTG 1 chr2R:20836482-20836602 ( 5) TTTTGTTG 1 chr3L:6743714-6743834 ( 76) TGTTGTTG 1 chr3L:19895726-19895846 ( 109) TGTTGTTG 1 chrX:18775089-18775209 ( 12) TGCTGTTT 1 chr3R:9226956-9227076 ( 56) TGCTGTTT 1 chrX:3137905-3138025 ( 112) TGCTGTTT 1 chr3R:26552386-26552506 ( 69) TGCTGTTT 1 chr2R:6971013-6971133 ( 3) TGTTGTTG 1 chr2R:13569822-13569942 ( 22) TGCTGTTT 1 chr2L:19155111-19155231 ( 65) TGTTGTTG 1 chr3L:2881778-2881898 ( 17) TGTTGTTG 1 chrX:19268779-19268899 ( 51) TTTTTTTT 1 chr2R:12916481-12916601 ( 102) TTTTTTTT 1 chr2L:3094968-3095088 ( 1) TTTTTTTT 1 chr2R:13188085-13188205 ( 31) TTTTTTTT 1 chr2L:14497805-14497925 ( 89) CTTTGTTT 1 chr3L:5152566-5152686 ( 74) CTTTGTTT 1 chr3L:742632-742752 ( 17) CTTTGTTT 1 chr2R:20067270-20067390 ( 2) TTTTGTTA 1 chr2R:7674345-7674465 ( 83) TTTTGTTA 1 chr2R:22657045-22657165 ( 94) ATCTGTTT 1 chr3L:21196722-21196842 ( 40) CGTTGTTT 1 chr2L:15432368-15432488 ( 90) TTTTGTTA 1 chr4:802852-802972 ( 31) TTTTGTTA 1 chr2R:21282401-21282521 ( 9) AGCTGTTT 1 chr2L:9938748-9938868 ( 65) AGCTGTTT 1 chr2L:14517499-14517619 ( 41) AGCTGTTT 1 chr2L:4363875-4363995 ( 93) TGTTGTTA 1 chr3L:11123952-11124072 ( 28) AGCTGTTT 1 chr3L:643455-643575 ( 57) AGCTGTTT 1 chr2R:24275478-24275598 ( 51) AGTTGTTG 1 chr3R:21580178-21580298 ( 78) TGCTGTTG 1 chr2L:13512942-13513062 ( 76) TGCTGTTG 1 chr3L:16770008-16770128 ( 58) ATTTTTTT 1 chrX:2136482-2136602 ( 26) TTCTTTTT 1 chr2R:22670702-22670822 ( 101) AGTTTTTT 1 chr3R:8801399-8801519 ( 52) AGTTTTTT 1 chr3L:10674981-10675101 ( 16) AGTTTTTT 1 chr3R:31309369-31309489 ( 11) CTCTGTTT 1 chrX:6678192-6678312 ( 60) ATTTGTTA 1 chr3R:22041761-22041881 ( 56) CTCTGTTT 1 chr3R:9024993-9025113 ( 62) CTTTGTTG 1 chr3L:10659668-10659788 ( 42) AGCTGTTG 1 chr3R:25626845-25626965 ( 60) TTTTTTTA 1 chr3L:5932579-5932699 ( 100) CTTTGTTA 1 chr3R:7105731-7105851 ( 52) AGTTTTTG 1 chr3L:815934-816054 ( 111) TGCTTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTGTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6807 E= 4.7e-009 15 -113 -1277 130 -1277 -1277 89 115 -1277 12 -1277 158 -1277 -1277 -1277 203 -1277 -1277 175 -51 -1277 -1277 -1277 203 -1277 -1277 -1277 203 -118 -1277 -11 143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTGTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 4.7e-009 0.285714 0.114286 0.000000 0.600000 0.000000 0.000000 0.457143 0.542857 0.000000 0.271429 0.000000 0.728571 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.828571 0.171429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.114286 0.000000 0.228571 0.657143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTGTTT MEME-2 regular expression -------------------------------------------------------------------------------- [TA][TG][TC]TGTT[TG] -------------------------------------------------------------------------------- Time 14.70 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCKCTC MEME-3 width = 8 sites = 52 llr = 428 E-value = 1.5e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 193a:a:a probability G 11::5::: matrix T 8:7:5:a: bits 2.0 * * 1.8 * *** 1.6 * *** 1.4 * * *** Relative 1.2 * * *** Entropy 1.0 **** *** (11.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCTC consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14458360-14458480 44 1.38e-05 cctcacactc tctctctc cctctccctc chr2R:23573225-23573345 96 1.38e-05 tcccgctccc tctctctc gctatctctc chr3R:7000781-7000901 5 1.38e-05 tcac tctctctc tttctcctac chrX:8924921-8925041 43 1.38e-05 gctctcgctc tctctctc tccctccctc chr2R:11529692-11529812 6 1.38e-05 CTGCC TCTCTCTC GCACACCCCC chr2L:15492142-15492262 59 1.38e-05 tcgctattca tctctctc tTTGGCGATG chrX:8650945-8651065 22 1.38e-05 TTtcgctctc tctctctc tctcactctc chrX:3779860-3779980 6 1.38e-05 ctctc tctctctc tctctctTGG chr2R:6971013-6971133 111 1.38e-05 CTCTATTTCC TCTCTCTC CT chr3L:20517586-20517706 4 1.38e-05 ctc tctctctc tctttctACC chr2L:18629193-18629313 93 1.38e-05 GCCCCCCCCc tctctctc tctctctctc chr2R:17476230-17476350 112 1.38e-05 tctctctacc tctctctc t chr3R:18298358-18298478 18 2.79e-05 TCTCACCCCC TCTCGCTC GTTCACTCGC chr2L:8163768-8163888 57 2.79e-05 GATCACGCCA TCTCGCTC GCACACCGTG chr2L:377955-378075 21 2.79e-05 CATCGCTCCC TCTCGCTC TGCGGCACTA chrX:18775089-18775209 56 2.79e-05 GGCCAGTGCA TCTCGCTC GCACGCACGG chr2L:7811814-7811934 58 2.79e-05 AGTCCCCCCG TCTCGCTC ACTCCTTCTC chr2R:10432462-10432582 43 2.79e-05 TTTCGCTCTA TCTCGCTC TGGCACACAC chr3L:6904142-6904262 32 2.79e-05 TTTAGTGTCA TCTCGCTC TGGCCATCGC chrX:17160582-17160702 77 2.79e-05 CACGCAGCCA TCTCGCTC GCACCCATGC chr3R:6992029-6992149 91 2.79e-05 CCCTCTTCCA TCTCGCTC ACACCCCTTA chr2R:20836482-20836602 43 2.79e-05 CTGTCTTCCC TCTCGCTC TTCTGCGCCA chr3L:10674981-10675101 70 4.20e-05 CCCCTCTCTA TCCCTCTC TGTCTCTCCC chrX:21368522-21368642 100 4.20e-05 GCGATCCTCT TCCCTCTC TTTCCATCCA chr3R:9144411-9144531 21 4.20e-05 CAACTTTTCC TCCCTCTC ATTTTCCTCT chr3L:6742368-6742488 109 5.64e-05 TTGCATGCCG TCCCGCTC CCGC chr3L:12693015-12693135 20 5.64e-05 GCTATAGCCA TCCCGCTC TCGCCCGGCC chr2L:16271569-16271689 39 5.64e-05 TCTCGTTCTC TCCCGCTC CCACTCACTC chrX:10802259-10802379 21 5.64e-05 CATCGTTTTC TCCCGCTC CCGCTTATCA chr3L:19895726-19895846 22 7.04e-05 CTGGCCTTAC GCTCTCTC ACTTGCTCAT chr3R:14569519-14569639 93 8.46e-05 CGTTCATGTT GCTCGCTC GACGACTCTG chr3R:7037483-7037603 25 9.88e-05 CGCTGGCTCT CCTCTCTC GCGAGCAAGC chr2R:6133373-6133493 43 9.88e-05 AGAGACTTTG CCTCTCTC TATCTCTTCC chr3R:6667305-6667425 10 1.27e-04 CTTGTTAAC TGTCTCTC GTGTCGCCCC chr2R:21101590-21101710 87 1.41e-04 GCTGCACATC TGTCGCTC GTAGGAAATG chr3R:26024705-26024825 98 1.41e-04 CGGCATGTAG TGTCGCTC CGCTCGCACC chr3R:16099866-16099986 21 1.69e-04 GTACTGTCTG TCTCCCTC CCCCTCGCAC chr2R:12916481-12916601 87 1.69e-04 CGGGAAGACA GCCCTCTC ATGGAGTTTT chr3L:2881778-2881898 110 1.69e-04 CGCCAGTGAT GCCCTCTC TTT chrX:13253113-13253233 21 1.84e-04 CATGTTTATG GCCCGCTC AACGTTCCAT chr2R:19669046-19669166 62 1.98e-04 CTGCACCACC CCCCTCTC ACCAACGACA chr2L:3114254-3114374 92 1.98e-04 ATAGCAAAGA CCCCTCTC CGGAAGGGGT chr2L:19155111-19155231 21 1.98e-04 GCTGGGCTTT CCCCTCTC CGCCGTTCAA chr3R:25626845-25626965 85 2.69e-04 CAGCAGATGT TCGCGCTC TTAGGAGCTG chrX:21281305-21281425 89 2.69e-04 TGATTTTTTG TCGCGCTC GCACGTGCGC chr2L:19135054-19135174 69 2.84e-04 TCTCATGCGT TCCCCCTC CTCGCGCCCA chr3L:8347504-8347624 73 3.25e-04 ACAACGTCGC GGTCGCTC CACTATTGGA chr2R:13194921-13195041 89 3.25e-04 AAAATGCAAT GGTCGCTC GTGGGCAGGC chrX:6109966-6110086 85 3.53e-04 TTATCGGCGG CGTCTCTC GCGAGACACT chr3R:26436728-26436848 86 3.53e-04 TATCACATAT TTTCGCTC AGTGTGCGTG chr2R:12776154-12776274 97 3.95e-04 CTCCACTACT TCTCTCCC TTCTGCTCCG chr2R:21090663-21090783 98 4.23e-04 ATTTTGCGCA TCTCGTTC TGCAGGTGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14458360-14458480 1.4e-05 43_[+3]_69 chr2R:23573225-23573345 1.4e-05 95_[+3]_17 chr3R:7000781-7000901 1.4e-05 4_[+3]_108 chrX:8924921-8925041 1.4e-05 42_[+3]_70 chr2R:11529692-11529812 1.4e-05 5_[+3]_107 chr2L:15492142-15492262 1.4e-05 58_[+3]_54 chrX:8650945-8651065 1.4e-05 21_[+3]_91 chrX:3779860-3779980 1.4e-05 5_[+3]_107 chr2R:6971013-6971133 1.4e-05 110_[+3]_2 chr3L:20517586-20517706 1.4e-05 3_[+3]_109 chr2L:18629193-18629313 1.4e-05 92_[+3]_20 chr2R:17476230-17476350 1.4e-05 111_[+3]_1 chr3R:18298358-18298478 2.8e-05 17_[+3]_95 chr2L:8163768-8163888 2.8e-05 56_[+3]_56 chr2L:377955-378075 2.8e-05 20_[+3]_92 chrX:18775089-18775209 2.8e-05 55_[+3]_57 chr2L:7811814-7811934 2.8e-05 57_[+3]_55 chr2R:10432462-10432582 2.8e-05 42_[+3]_70 chr3L:6904142-6904262 2.8e-05 31_[+3]_81 chrX:17160582-17160702 2.8e-05 76_[+3]_36 chr3R:6992029-6992149 2.8e-05 90_[+3]_22 chr2R:20836482-20836602 2.8e-05 42_[+3]_70 chr3L:10674981-10675101 4.2e-05 69_[+3]_43 chrX:21368522-21368642 4.2e-05 99_[+3]_13 chr3R:9144411-9144531 4.2e-05 20_[+3]_92 chr3L:6742368-6742488 5.6e-05 108_[+3]_4 chr3L:12693015-12693135 5.6e-05 19_[+3]_93 chr2L:16271569-16271689 5.6e-05 38_[+3]_74 chrX:10802259-10802379 5.6e-05 20_[+3]_92 chr3L:19895726-19895846 7e-05 21_[+3]_91 chr3R:14569519-14569639 8.5e-05 92_[+3]_20 chr3R:7037483-7037603 9.9e-05 24_[+3]_88 chr2R:6133373-6133493 9.9e-05 42_[+3]_70 chr3R:6667305-6667425 0.00013 9_[+3]_103 chr2R:21101590-21101710 0.00014 86_[+3]_26 chr3R:26024705-26024825 0.00014 97_[+3]_15 chr3R:16099866-16099986 0.00017 20_[+3]_92 chr2R:12916481-12916601 0.00017 86_[+3]_26 chr3L:2881778-2881898 0.00017 109_[+3]_3 chrX:13253113-13253233 0.00018 20_[+3]_92 chr2R:19669046-19669166 0.0002 61_[+3]_51 chr2L:3114254-3114374 0.0002 91_[+3]_21 chr2L:19155111-19155231 0.0002 20_[+3]_92 chr3R:25626845-25626965 0.00027 84_[+3]_28 chrX:21281305-21281425 0.00027 88_[+3]_24 chr2L:19135054-19135174 0.00028 68_[+3]_44 chr3L:8347504-8347624 0.00033 72_[+3]_40 chr2R:13194921-13195041 0.00033 88_[+3]_24 chrX:6109966-6110086 0.00035 84_[+3]_28 chr3R:26436728-26436848 0.00035 85_[+3]_27 chr2R:12776154-12776274 0.00039 96_[+3]_16 chr2R:21090663-21090783 0.00042 97_[+3]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCKCTC width=8 seqs=52 chr2R:14458360-14458480 ( 44) TCTCTCTC 1 chr2R:23573225-23573345 ( 96) TCTCTCTC 1 chr3R:7000781-7000901 ( 5) TCTCTCTC 1 chrX:8924921-8925041 ( 43) TCTCTCTC 1 chr2R:11529692-11529812 ( 6) TCTCTCTC 1 chr2L:15492142-15492262 ( 59) TCTCTCTC 1 chrX:8650945-8651065 ( 22) TCTCTCTC 1 chrX:3779860-3779980 ( 6) TCTCTCTC 1 chr2R:6971013-6971133 ( 111) TCTCTCTC 1 chr3L:20517586-20517706 ( 4) TCTCTCTC 1 chr2L:18629193-18629313 ( 93) TCTCTCTC 1 chr2R:17476230-17476350 ( 112) TCTCTCTC 1 chr3R:18298358-18298478 ( 18) TCTCGCTC 1 chr2L:8163768-8163888 ( 57) TCTCGCTC 1 chr2L:377955-378075 ( 21) TCTCGCTC 1 chrX:18775089-18775209 ( 56) TCTCGCTC 1 chr2L:7811814-7811934 ( 58) TCTCGCTC 1 chr2R:10432462-10432582 ( 43) TCTCGCTC 1 chr3L:6904142-6904262 ( 32) TCTCGCTC 1 chrX:17160582-17160702 ( 77) TCTCGCTC 1 chr3R:6992029-6992149 ( 91) TCTCGCTC 1 chr2R:20836482-20836602 ( 43) TCTCGCTC 1 chr3L:10674981-10675101 ( 70) TCCCTCTC 1 chrX:21368522-21368642 ( 100) TCCCTCTC 1 chr3R:9144411-9144531 ( 21) TCCCTCTC 1 chr3L:6742368-6742488 ( 109) TCCCGCTC 1 chr3L:12693015-12693135 ( 20) TCCCGCTC 1 chr2L:16271569-16271689 ( 39) TCCCGCTC 1 chrX:10802259-10802379 ( 21) TCCCGCTC 1 chr3L:19895726-19895846 ( 22) GCTCTCTC 1 chr3R:14569519-14569639 ( 93) GCTCGCTC 1 chr3R:7037483-7037603 ( 25) CCTCTCTC 1 chr2R:6133373-6133493 ( 43) CCTCTCTC 1 chr3R:6667305-6667425 ( 10) TGTCTCTC 1 chr2R:21101590-21101710 ( 87) TGTCGCTC 1 chr3R:26024705-26024825 ( 98) TGTCGCTC 1 chr3R:16099866-16099986 ( 21) TCTCCCTC 1 chr2R:12916481-12916601 ( 87) GCCCTCTC 1 chr3L:2881778-2881898 ( 110) GCCCTCTC 1 chrX:13253113-13253233 ( 21) GCCCGCTC 1 chr2R:19669046-19669166 ( 62) CCCCTCTC 1 chr2L:3114254-3114374 ( 92) CCCCTCTC 1 chr2L:19155111-19155231 ( 21) CCCCTCTC 1 chr3R:25626845-25626965 ( 85) TCGCGCTC 1 chrX:21281305-21281425 ( 89) TCGCGCTC 1 chr2L:19135054-19135174 ( 69) TCCCCCTC 1 chr3L:8347504-8347624 ( 73) GGTCGCTC 1 chr2R:13194921-13195041 ( 89) GGTCGCTC 1 chrX:6109966-6110086 ( 85) CGTCTCTC 1 chr3R:26436728-26436848 ( 86) TTTCGCTC 1 chr2R:12776154-12776274 ( 97) TCTCTCCC 1 chr2R:21090663-21090783 ( 98) TCTCGTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.6142 E= 1.5e-006 -1234 -112 -88 162 -1234 179 -110 -366 -1234 10 -268 150 -1234 200 -1234 -1234 -1234 -270 90 103 -1234 197 -1234 -366 -1234 -370 -1234 201 -1234 200 -1234 -1234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 1.5e-006 0.000000 0.115385 0.134615 0.750000 0.000000 0.865385 0.115385 0.019231 0.000000 0.269231 0.038462 0.692308 0.000000 1.000000 0.000000 0.000000 0.000000 0.038462 0.461538 0.500000 0.000000 0.980769 0.000000 0.019231 0.000000 0.019231 0.000000 0.980769 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-3 regular expression -------------------------------------------------------------------------------- TC[TC]C[TG]CTC -------------------------------------------------------------------------------- Time 20.55 secs. ******************************************************************************** ******************************************************************************** MOTIF AACAAMAA MEME-4 width = 8 sites = 58 llr = 463 E-value = 5.0e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif AACAAMAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 7a2a74a9 pos.-specific C ::7::6:1 probability G 3:1:3::: matrix T :::::::: bits 2.0 * * * 1.8 * * * 1.6 * * ** 1.4 * * ** Relative 1.2 ** ** ** Entropy 1.0 ** ***** (11.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AACAACAA consensus G A GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAMAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7604540-7604660 5 1.84e-05 CGAC AACAACAA AAACAATGAA chr2L:12027264-12027384 24 1.84e-05 Caataaaaac aacaacaa taacgaaaag chr2L:18150626-18150746 57 1.84e-05 AGGGCCCAGC AACAACAA CCACTTTGCT chr2L:2130261-2130381 86 1.84e-05 ACAGAAAATA AACAACAA ATACGCATGT chr3R:18298358-18298478 70 1.84e-05 AGCCAACAAA AACAACAA CAGCAGCAGC chr3L:15554350-15554470 93 1.84e-05 cagcagcaac aacaacaa ccgcatcagc chrX:8063447-8063567 55 1.84e-05 GAGCGAAAGA AACAACAA AAAAAGGGGA chr2L:377955-378075 91 1.84e-05 AACATTGGAA AACAACAA CTCCAACCGG chr3R:7000781-7000901 61 1.84e-05 GCGGAAAAAG AACAACAA CACAAGTTGG chr2R:19631149-19631269 24 1.84e-05 ACAACAAACA AACAACAA CTCGATGCGT chr3L:11123952-11124072 95 1.84e-05 CAAAAACAAG AACAACAA CAGAAACACC chr3L:11253788-11253908 82 1.84e-05 GGGCAGCAGC AACAACAA TGTTGGCCAA chr3R:26024705-26024825 15 1.84e-05 ATGGCGAGGC AACAACAA AAACGGCAGG chr2R:22408457-22408577 21 1.84e-05 CGACCAGGAC AACAACAA AGCGCTGAGG chr2R:22670702-22670822 113 3.75e-05 TTTTTTTCAC AACAAAAA chr2L:18567697-18567817 18 3.75e-05 ATAAACCGTA AACAAAAA TTATTGTTGC chr3R:8269804-8269924 57 3.75e-05 TTGGTTTGTC AACAAAAA CATGTGCGCG chrX:15063828-15063948 79 3.75e-05 TGTCACTTGC AACAAAAA CAACAGGGGC chr2R:21282401-21282521 82 7.28e-05 ATCTGGTGGC GACAACAA ACAAAGACTT chr3R:25445966-25446086 109 7.28e-05 TCGCCGCCac aacagcaa catc chr2R:16828915-16829035 14 7.28e-05 ATAGAAATGC GACAACAA ATAACAAGAG chr3R:9529503-9529623 78 7.28e-05 AACAGGGCAG AACAGCAA TAACTATAAA chr2L:14517499-14517619 6 7.28e-05 CATGT GACAACAA TGTGGAACCG chr3R:5107053-5107173 78 7.28e-05 CTTATAAATA GACAACAA CAGCGGCCCT chr3R:26032347-26032467 43 7.28e-05 cagcaacggc aacagcaa caccaacaag chr3R:26040075-26040195 33 7.28e-05 TTGTGAAAAA GACAACAA CACCGGCGTT chr3L:8689836-8689956 9 9.18e-05 GCGaaaaa aaaaacaa cgaatgacag chrX:6678192-6678312 29 9.18e-05 TAGTTTCAAA AAAAACAA ATAGAACTAT chr2R:24743674-24743794 52 1.28e-04 TGTTCACACT AACAGAAA ACATCGATAG chr2L:3094968-3095088 52 1.28e-04 AGAATGCCAA AACAGAAA CACCTGTTTT chr2R:12970723-12970843 107 1.28e-04 ACAAAAAGCG GACAAAAA ATAAGG chr2R:8655383-8655503 58 1.48e-04 CTGGAACTCa aaaaaaaa agaaaagaaa chr3L:8110338-8110458 79 1.48e-04 GTGGTGAAGA AAAAAAAA ACAGCGAAAT chr3R:26002547-26002667 37 1.48e-04 GTGGCCAGAA AAAAAAAA CTAAATATCA chr3L:774706-774826 1 1.48e-04 . AAAAAAAA TGAGAGGGGT chr3R:9144411-9144531 99 1.48e-04 aataaaaaga aaaaaaaa agaaagaaag chr3R:4453695-4453815 105 1.66e-04 ACGGCTTGAA AAGAACAA CACACAAC chr2L:19181796-19181916 61 1.66e-04 CTAGCAAATG AAGAACAA ACTCAACCCA chr2R:24745992-24746112 61 1.83e-04 TTGTTTCGCA GACAGCAA TTGTTCAAAC chr3L:7370468-7370588 25 1.83e-04 TGTGGGcaga gacagcaa caccagcagc chr3L:10858814-10858934 36 1.83e-04 CGGCGAAAGA GACAGCAA CAAGCCGGAG chr3L:20472927-20473047 86 2.19e-04 AAAAAAACCG AAAAGCAA GTACAGTAAA chr3R:26035246-26035366 101 2.38e-04 CACGATGGAC AAGAAAAA ATTAAATAAA chr2L:7157429-7157549 10 2.38e-04 CCAGGAGGC AAGAAAAA CACACCCACC chr2L:14234041-14234161 87 2.56e-04 CGAATGGCAA GACAGAAA CCGAAAACCG chr3L:14131760-14131880 8 2.56e-04 AATGTCA GACAGAAA GGGATGCAGA chr3R:18923862-18923982 22 2.56e-04 TGCAGAAAGA GACAGAAA GAGCAGAGAG chr2R:24086624-24086744 34 2.93e-04 TAGTAAATTG GAAAAAAA TAAAATCGTC chr3R:23387103-23387223 46 2.93e-04 TTTAGGATCA GAAAAAAA TTAAAACCAT chr3L:9446751-9446871 51 2.93e-04 TGCAGCCCTG GAAAAAAA CCTATTCCTA chr3R:15666191-15666311 57 2.93e-04 ACAATAATCG AAAAGAAA ACTCTGAACG chr3R:31794634-31794754 51 2.93e-04 GGCCAAAGGC GAAAAAAA CGCTGTTCGG chr3L:772315-772435 75 3.28e-04 TTTAAGCTTT AAGAGCAA TATATTTCAG chr3R:15973674-15973794 95 3.28e-04 gtgcggagag aagagcaa atgcgaagcg chrX:14627251-14627371 17 3.63e-04 CAGCTAGATC AACAACAC TTGCAGGTGA chr2R:7674345-7674465 53 3.63e-04 AAAGAAGCCT AACAACAC TTGAGTGGTA chr3R:23922316-23922436 44 3.63e-04 CGACAACACA AACAACAC GAGAGCAGAG chr3L:21476640-21476760 78 3.99e-04 GTGTGTGGCC Aagagaaa gagagagaga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAMAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7604540-7604660 1.8e-05 4_[+4]_108 chr2L:12027264-12027384 1.8e-05 23_[+4]_89 chr2L:18150626-18150746 1.8e-05 56_[+4]_56 chr2L:2130261-2130381 1.8e-05 85_[+4]_27 chr3R:18298358-18298478 1.8e-05 69_[+4]_43 chr3L:15554350-15554470 1.8e-05 92_[+4]_20 chrX:8063447-8063567 1.8e-05 54_[+4]_58 chr2L:377955-378075 1.8e-05 90_[+4]_22 chr3R:7000781-7000901 1.8e-05 60_[+4]_52 chr2R:19631149-19631269 1.8e-05 23_[+4]_89 chr3L:11123952-11124072 1.8e-05 94_[+4]_18 chr3L:11253788-11253908 1.8e-05 81_[+4]_31 chr3R:26024705-26024825 1.8e-05 14_[+4]_98 chr2R:22408457-22408577 1.8e-05 20_[+4]_92 chr2R:22670702-22670822 3.7e-05 112_[+4] chr2L:18567697-18567817 3.7e-05 17_[+4]_95 chr3R:8269804-8269924 3.7e-05 56_[+4]_56 chrX:15063828-15063948 3.7e-05 78_[+4]_34 chr2R:21282401-21282521 7.3e-05 81_[+4]_31 chr3R:25445966-25446086 7.3e-05 108_[+4]_4 chr2R:16828915-16829035 7.3e-05 13_[+4]_99 chr3R:9529503-9529623 7.3e-05 77_[+4]_35 chr2L:14517499-14517619 7.3e-05 5_[+4]_107 chr3R:5107053-5107173 7.3e-05 77_[+4]_35 chr3R:26032347-26032467 7.3e-05 42_[+4]_70 chr3R:26040075-26040195 7.3e-05 32_[+4]_80 chr3L:8689836-8689956 9.2e-05 8_[+4]_104 chrX:6678192-6678312 9.2e-05 28_[+4]_84 chr2R:24743674-24743794 0.00013 51_[+4]_61 chr2L:3094968-3095088 0.00013 51_[+4]_61 chr2R:12970723-12970843 0.00013 106_[+4]_6 chr2R:8655383-8655503 0.00015 57_[+4]_55 chr3L:8110338-8110458 0.00015 78_[+4]_34 chr3R:26002547-26002667 0.00015 36_[+4]_76 chr3L:774706-774826 0.00015 [+4]_112 chr3R:9144411-9144531 0.00015 98_[+4]_14 chr3R:4453695-4453815 0.00017 104_[+4]_8 chr2L:19181796-19181916 0.00017 60_[+4]_52 chr2R:24745992-24746112 0.00018 60_[+4]_52 chr3L:7370468-7370588 0.00018 24_[+4]_88 chr3L:10858814-10858934 0.00018 35_[+4]_77 chr3L:20472927-20473047 0.00022 85_[+4]_27 chr3R:26035246-26035366 0.00024 100_[+4]_12 chr2L:7157429-7157549 0.00024 9_[+4]_103 chr2L:14234041-14234161 0.00026 86_[+4]_26 chr3L:14131760-14131880 0.00026 7_[+4]_105 chr3R:18923862-18923982 0.00026 21_[+4]_91 chr2R:24086624-24086744 0.00029 33_[+4]_79 chr3R:23387103-23387223 0.00029 45_[+4]_67 chr3L:9446751-9446871 0.00029 50_[+4]_62 chr3R:15666191-15666311 0.00029 56_[+4]_56 chr3R:31794634-31794754 0.00029 50_[+4]_62 chr3L:772315-772435 0.00033 74_[+4]_38 chr3R:15973674-15973794 0.00033 94_[+4]_18 chrX:14627251-14627371 0.00036 16_[+4]_96 chr2R:7674345-7674465 0.00036 52_[+4]_60 chr3R:23922316-23922436 0.00036 43_[+4]_69 chr3L:21476640-21476760 0.0004 77_[+4]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAMAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AACAAMAA width=8 seqs=58 chrX:7604540-7604660 ( 5) AACAACAA 1 chr2L:12027264-12027384 ( 24) AACAACAA 1 chr2L:18150626-18150746 ( 57) AACAACAA 1 chr2L:2130261-2130381 ( 86) AACAACAA 1 chr3R:18298358-18298478 ( 70) AACAACAA 1 chr3L:15554350-15554470 ( 93) AACAACAA 1 chrX:8063447-8063567 ( 55) AACAACAA 1 chr2L:377955-378075 ( 91) AACAACAA 1 chr3R:7000781-7000901 ( 61) AACAACAA 1 chr2R:19631149-19631269 ( 24) AACAACAA 1 chr3L:11123952-11124072 ( 95) AACAACAA 1 chr3L:11253788-11253908 ( 82) AACAACAA 1 chr3R:26024705-26024825 ( 15) AACAACAA 1 chr2R:22408457-22408577 ( 21) AACAACAA 1 chr2R:22670702-22670822 ( 113) AACAAAAA 1 chr2L:18567697-18567817 ( 18) AACAAAAA 1 chr3R:8269804-8269924 ( 57) AACAAAAA 1 chrX:15063828-15063948 ( 79) AACAAAAA 1 chr2R:21282401-21282521 ( 82) GACAACAA 1 chr3R:25445966-25446086 ( 109) AACAGCAA 1 chr2R:16828915-16829035 ( 14) GACAACAA 1 chr3R:9529503-9529623 ( 78) AACAGCAA 1 chr2L:14517499-14517619 ( 6) GACAACAA 1 chr3R:5107053-5107173 ( 78) GACAACAA 1 chr3R:26032347-26032467 ( 43) AACAGCAA 1 chr3R:26040075-26040195 ( 33) GACAACAA 1 chr3L:8689836-8689956 ( 9) AAAAACAA 1 chrX:6678192-6678312 ( 29) AAAAACAA 1 chr2R:24743674-24743794 ( 52) AACAGAAA 1 chr2L:3094968-3095088 ( 52) AACAGAAA 1 chr2R:12970723-12970843 ( 107) GACAAAAA 1 chr2R:8655383-8655503 ( 58) AAAAAAAA 1 chr3L:8110338-8110458 ( 79) AAAAAAAA 1 chr3R:26002547-26002667 ( 37) AAAAAAAA 1 chr3L:774706-774826 ( 1) AAAAAAAA 1 chr3R:9144411-9144531 ( 99) AAAAAAAA 1 chr3R:4453695-4453815 ( 105) AAGAACAA 1 chr2L:19181796-19181916 ( 61) AAGAACAA 1 chr2R:24745992-24746112 ( 61) GACAGCAA 1 chr3L:7370468-7370588 ( 25) GACAGCAA 1 chr3L:10858814-10858934 ( 36) GACAGCAA 1 chr3L:20472927-20473047 ( 86) AAAAGCAA 1 chr3R:26035246-26035366 ( 101) AAGAAAAA 1 chr2L:7157429-7157549 ( 10) AAGAAAAA 1 chr2L:14234041-14234161 ( 87) GACAGAAA 1 chr3L:14131760-14131880 ( 8) GACAGAAA 1 chr3R:18923862-18923982 ( 22) GACAGAAA 1 chr2R:24086624-24086744 ( 34) GAAAAAAA 1 chr3R:23387103-23387223 ( 46) GAAAAAAA 1 chr3L:9446751-9446871 ( 51) GAAAAAAA 1 chr3R:15666191-15666311 ( 57) AAAAGAAA 1 chr3R:31794634-31794754 ( 51) GAAAAAAA 1 chr3L:772315-772435 ( 75) AAGAGCAA 1 chr3R:15973674-15973794 ( 95) AAGAGCAA 1 chrX:14627251-14627371 ( 17) AACAACAC 1 chr2R:7674345-7674465 ( 53) AACAACAC 1 chr3R:23922316-23922436 ( 44) AACAACAC 1 chr3L:21476640-21476760 ( 78) AAGAGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAMAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1759 E= 5.0e-006 149 -1250 16 -1250 195 -1250 -1250 -1250 -20 139 -103 -1250 195 -1250 -1250 -1250 149 -1250 16 -1250 62 127 -1250 -1250 195 -1250 -1250 -1250 188 -227 -1250 -1250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAMAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 5.0e-006 0.724138 0.000000 0.275862 0.000000 1.000000 0.000000 0.000000 0.000000 0.224138 0.655172 0.120690 0.000000 1.000000 0.000000 0.000000 0.000000 0.724138 0.000000 0.275862 0.000000 0.396552 0.603448 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.948276 0.051724 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAMAA MEME-4 regular expression -------------------------------------------------------------------------------- [AG]A[CA]A[AG][CA]AA -------------------------------------------------------------------------------- Time 26.30 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGYKTK MEME-5 width = 8 sites = 25 llr = 221 E-value = 7.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGYKTK MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::2 pos.-specific C ::::4::: probability G :a:a:5:5 matrix T a:a:65a3 bits 2.0 **** * 1.8 **** * 1.6 **** * 1.4 **** * Relative 1.2 **** * Entropy 1.0 ******* (12.8 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus CT T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGYKTK MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:17811551-17811671 79 1.32e-05 AAGCTCAgtg tgtgtgtg tgcgcgacag chr2L:14443995-14444115 112 1.32e-05 CCCGACTATC TGTGTGTG T chr2R:20600804-20600924 86 1.32e-05 CATGGATGGA TGTGTGTG TGTGTGCGTA chr3L:21476640-21476760 67 1.32e-05 CGAAAGTATC TGTGTGTG GCCAagagaa chrX:16782175-16782295 70 2.62e-05 TTTTGGCTTT TGTGTTTG TGTTTTTTTG chrX:8058517-8058637 105 2.62e-05 GCCGTCCAtg tgtgtttg cgttcgag chr3R:5107053-5107173 7 2.62e-05 tatatc tgtGTTTG CCGGCTGAAA chr3L:6743714-6743834 107 3.97e-05 AGTGCGGGTG TGTGCGTG CCAGTC chr3R:26436728-26436848 96 3.97e-05 TTTCGCTCAG TGTGCGTG TTACTGTCGA chr2L:6722964-6723084 46 3.97e-05 TGCCCACGCG TGTGCGtg tgtaggtgta chr3L:7370468-7370588 82 3.97e-05 GAGAGGGCAG TGTGCGTG TGTTAGTGCG chr2R:24086624-24086744 62 6.61e-05 GGAGTTTTTA TGTGCTTG CAGAGTAGTG chr3R:31794634-31794754 2 6.61e-05 g tgtgtgtT CGCAGGGGTG chr3R:7089604-7089724 105 6.61e-05 GGGAGGCAGA TGTGCTTG GAAAATGT chr2R:13561101-13561221 27 7.90e-05 CAGTTTCACA TGTGTTTT CGGGATTGCG chr3L:7984845-7984965 100 7.90e-05 GATGCTTCGA TGTGTTTT GCTCCTGATG chr3R:26024705-26024825 33 7.90e-05 AAACGGCAGG TGTGTTTT TCGAAAAGGG chr3R:13837940-13838060 60 9.28e-05 CGGCATTGCG TGTGTGTA TGCACTGTGA chr2R:7486507-7486627 54 9.28e-05 AGGTCAGATT TGTGTGTA TCTTTTGTAT chr3R:6667305-6667425 66 1.06e-04 ATCTCAATCG TGTGTTTA CCTTTTGGAA chr2L:13833074-13833194 92 1.06e-04 TGTTGATTTA TGTGTTTA TTCTATCTTA chr2R:11045833-11045953 85 1.06e-04 CATAATTATT TGTGTTTA TTTTTAATAC chr2L:15425745-15425865 7 1.20e-04 CACAGC TGTGCGTT CATTGAACGC chrX:21281305-21281425 112 1.20e-04 TGCGCGAGTG TGTGCGTT T chr2L:19135054-19135174 19 1.33e-04 ACACATCTGT TGTGCTTT GGTGGTGACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGYKTK MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:17811551-17811671 1.3e-05 78_[+5]_34 chr2L:14443995-14444115 1.3e-05 111_[+5]_1 chr2R:20600804-20600924 1.3e-05 85_[+5]_27 chr3L:21476640-21476760 1.3e-05 66_[+5]_46 chrX:16782175-16782295 2.6e-05 69_[+5]_43 chrX:8058517-8058637 2.6e-05 104_[+5]_8 chr3R:5107053-5107173 2.6e-05 6_[+5]_106 chr3L:6743714-6743834 4e-05 106_[+5]_6 chr3R:26436728-26436848 4e-05 95_[+5]_17 chr2L:6722964-6723084 4e-05 45_[+5]_67 chr3L:7370468-7370588 4e-05 81_[+5]_31 chr2R:24086624-24086744 6.6e-05 61_[+5]_51 chr3R:31794634-31794754 6.6e-05 1_[+5]_111 chr3R:7089604-7089724 6.6e-05 104_[+5]_8 chr2R:13561101-13561221 7.9e-05 26_[+5]_86 chr3L:7984845-7984965 7.9e-05 99_[+5]_13 chr3R:26024705-26024825 7.9e-05 32_[+5]_80 chr3R:13837940-13838060 9.3e-05 59_[+5]_53 chr2R:7486507-7486627 9.3e-05 53_[+5]_59 chr3R:6667305-6667425 0.00011 65_[+5]_47 chr2L:13833074-13833194 0.00011 91_[+5]_21 chr2R:11045833-11045953 0.00011 84_[+5]_28 chr2L:15425745-15425865 0.00012 6_[+5]_106 chrX:21281305-21281425 0.00012 111_[+5]_1 chr2L:19135054-19135174 0.00013 18_[+5]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGYKTK MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGYKTK width=8 seqs=25 chr3R:17811551-17811671 ( 79) TGTGTGTG 1 chr2L:14443995-14444115 ( 112) TGTGTGTG 1 chr2R:20600804-20600924 ( 86) TGTGTGTG 1 chr3L:21476640-21476760 ( 67) TGTGTGTG 1 chrX:16782175-16782295 ( 70) TGTGTTTG 1 chrX:8058517-8058637 ( 105) TGTGTTTG 1 chr3R:5107053-5107173 ( 7) TGTGTTTG 1 chr3L:6743714-6743834 ( 107) TGTGCGTG 1 chr3R:26436728-26436848 ( 96) TGTGCGTG 1 chr2L:6722964-6723084 ( 46) TGTGCGTG 1 chr3L:7370468-7370588 ( 82) TGTGCGTG 1 chr2R:24086624-24086744 ( 62) TGTGCTTG 1 chr3R:31794634-31794754 ( 2) TGTGTGTT 1 chr3R:7089604-7089724 ( 105) TGTGCTTG 1 chr2R:13561101-13561221 ( 27) TGTGTTTT 1 chr3L:7984845-7984965 ( 100) TGTGTTTT 1 chr3R:26024705-26024825 ( 33) TGTGTTTT 1 chr3R:13837940-13838060 ( 60) TGTGTGTA 1 chr2R:7486507-7486627 ( 54) TGTGTGTA 1 chr3R:6667305-6667425 ( 66) TGTGTTTA 1 chr2L:13833074-13833194 ( 92) TGTGTTTA 1 chr2R:11045833-11045953 ( 85) TGTGTTTA 1 chr2L:15425745-15425865 ( 7) TGTGCGTT 1 chrX:21281305-21281425 ( 112) TGTGCGTT 1 chr2L:19135054-19135174 ( 19) TGTGCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGYKTK MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0632 E= 7.4e+004 -1129 -1129 -1129 203 -1129 -1129 202 -1129 -1129 -1129 -1129 203 -1129 -1129 202 -1129 -1129 52 -1129 139 -1129 -1129 107 97 -1129 -1129 -1129 203 -37 -1129 107 20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGYKTK MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 7.4e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.360000 0.000000 0.640000 0.000000 0.000000 0.520000 0.480000 0.000000 0.000000 0.000000 1.000000 0.200000 0.000000 0.520000 0.280000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGYKTK MEME-5 regular expression -------------------------------------------------------------------------------- TGTG[TC][GT]T[GTA] -------------------------------------------------------------------------------- Time 31.93 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17476230-17476350 1.29e-02 99_[+3(1.38e-05)]_4_[+3(1.38e-05)]_\ 1 chr2R:13194921-13195041 8.27e-02 120 chr2R:24279811-24279931 2.19e-01 120 chr3R:25596554-25596674 1.16e-02 15_[+1(4.48e-05)]_97 chr3R:26040075-26040195 5.11e-03 11_[+1(4.48e-05)]_13_[+4(7.28e-05)]_\ 80 chr3L:16049224-16049344 8.53e-02 20_[+1(1.48e-05)]_92 chr3R:9144411-9144531 1.96e-04 20_[+3(4.20e-05)]_36_[+1(5.99e-05)]_\ 48 chr2R:22408457-22408577 4.25e-03 20_[+4(1.84e-05)]_28_[+1(1.48e-05)]_\ 56 chr3R:9024993-9025113 8.79e-03 20_[+1(4.48e-05)]_73_[+1(4.48e-05)]_\ 11 chr2R:20836482-20836602 1.01e-03 4_[+2(7.86e-05)]_30_[+3(2.79e-05)]_\ 70 chr3R:26032347-26032467 2.37e-01 30_[+4(7.28e-05)]_4_[+4(7.28e-05)]_\ 70 chr3L:7156332-7156452 5.20e-02 68_[+1(4.48e-05)]_44 chr2R:6961577-6961697 9.88e-02 90_[+1(7.45e-05)]_22 chr3L:2881778-2881898 1.85e-02 120 chrX:21368522-21368642 9.44e-03 49_[+1(4.48e-05)]_42_[+3(4.20e-05)]_\ 13 chr3R:26024705-26024825 2.03e-05 14_[+4(1.84e-05)]_10_[+5(7.90e-05)]_\ 80 chr3R:7089604-7089724 6.78e-03 38_[+1(1.48e-05)]_58_[+5(6.61e-05)]_\ 8 chr3L:5810143-5810263 7.21e-01 120 chr2R:24275478-24275598 1.14e-01 120 chr2R:12970723-12970843 6.47e-02 120 chr2R:18672226-18672346 1.19e-01 52_[+1(1.48e-05)]_60 chr3L:15847277-15847397 7.53e-02 120 chr2L:19155111-19155231 5.66e-04 86_[+1(4.48e-05)]_26 chr2R:21101590-21101710 6.25e-03 73_[+1(1.48e-05)]_39 chr3L:643455-643575 9.62e-03 48_[+1(1.48e-05)]_64 chr3L:10851582-10851702 8.82e-02 55_[+1(1.48e-05)]_57 chr3R:11877291-11877411 3.78e-01 120 chr3R:23922316-23922436 2.88e-02 92_[+1(4.48e-05)]_20 chr3R:6992029-6992149 1.41e-04 3_[+2(2.56e-05)]_79_[+3(2.79e-05)]_\ 22 chr3L:815934-816054 5.22e-02 120 chr2L:18629193-18629313 7.28e-02 92_[+3(1.38e-05)]_[+3(1.38e-05)]_\ [+3(1.38e-05)]_4 chr3L:11253788-11253908 2.27e-02 81_[+4(1.84e-05)]_31 chr2L:4813023-4813143 8.76e-01 120 chr2R:11045833-11045953 6.57e-03 100_[+1(4.48e-05)]_12 chr3R:31794634-31794754 1.11e-03 1_[+5(6.61e-05)]_74_[+1(4.48e-05)]_\ 6_[+1(4.48e-05)]_15 chr3L:6790685-6790805 9.13e-01 120 chr3L:1420032-1420152 4.69e-04 24_[+1(1.48e-05)]_19_[+2(3.90e-05)]_\ 61 chr2R:13188085-13188205 1.06e-02 3_[+1(4.48e-05)]_109 chr2L:3094968-3095088 7.39e-04 120 chr3L:15163556-15163676 4.93e-01 120 chr2L:18980724-18980844 3.23e-01 120 chr3R:18923862-18923982 1.03e-03 100_[+1(5.99e-05)]_12 chrX:17160582-17160702 6.72e-03 76_[+3(2.79e-05)]_24_[+2(7.86e-05)]_\ 4 chr2L:19219530-19219650 8.82e-01 120 chr3R:14569519-14569639 2.58e-02 92_[+3(8.46e-05)]_20 chr3L:20472927-20473047 5.31e-02 53_[+1(8.95e-05)]_59 chrX:21281305-21281425 2.22e-04 70_[+2(2.56e-05)]_42 chr3L:6904142-6904262 1.48e-03 16_[+2(1.27e-05)]_7_[+3(2.79e-05)]_\ 26_[+3(2.79e-05)]_47 chr2L:13512942-13513062 5.79e-03 25_[+1(1.48e-05)]_4_[+1(1.48e-05)]_\ 75 chr3L:297101-297221 6.84e-01 120 chr3L:10858814-10858934 1.75e-02 70_[+1(4.48e-05)]_42 chr3L:20517586-20517706 1.74e-03 1_[+3(1.38e-05)]_51_[+1(4.48e-05)]_\ 52 chr4:802852-802972 8.89e-03 44_[+1(1.48e-05)]_34_[+1(1.48e-05)]_\ 26 chr2R:13569822-13569942 5.19e-02 120 chr3L:19682987-19683107 1.96e-01 15_[+1(7.45e-05)]_97 chr3L:21476640-21476760 2.40e-04 46_[+1(4.48e-05)]_12_[+5(1.32e-05)]_\ 46 chr3L:11123952-11124072 2.17e-05 25_[+1(4.48e-05)]_35_[+1(1.48e-05)]_\ 9_[+4(9.18e-05)]_1_[+4(1.84e-05)]_18 chr2R:6971013-6971133 8.35e-04 110_[+3(1.38e-05)]_2 chr3R:16234496-16234616 4.92e-01 120 chr3R:7105731-7105851 1.37e-02 92_[+1(5.99e-05)]_20 chr2L:10372620-10372740 7.82e-01 120 chr3L:774706-774826 1.78e-02 120 chr3R:19017867-19017987 9.57e-01 120 chr3R:19934986-19935106 6.13e-01 120 chr2R:10432462-10432582 1.12e-05 11_[+1(1.48e-05)]_23_[+3(2.79e-05)]_\ 54_[+2(1.27e-05)]_8 chrX:3779860-3779980 1.21e-03 1_[+3(1.38e-05)]_[+3(1.38e-05)]_66_\ [+1(1.48e-05)]_29 chr3L:742632-742752 1.05e-02 120 chr3R:26552386-26552506 2.20e-02 120 chr3L:22054972-22055092 3.28e-02 48_[+1(7.45e-05)]_64 chrX:3137905-3138025 8.42e-03 120 chr3L:5152566-5152686 1.82e-03 83_[+1(4.48e-05)]_29 chr2L:7157429-7157549 3.61e-03 108_[+2(3.90e-05)]_4 chr3L:10674981-10675101 1.57e-03 40_[+1(4.48e-05)]_21_[+3(4.20e-05)]_\ 43 chr3R:26030628-26030748 3.71e-01 120 chr2L:3114254-3114374 1.06e-03 13_[+2(1.27e-05)]_6_[+2(7.86e-05)]_\ 85 chr3R:21580178-21580298 2.75e-02 69_[+1(4.48e-05)]_43 chr2R:20600804-20600924 4.49e-03 12_[+1(4.48e-05)]_65_[+5(1.32e-05)]_\ 27 chrX:10802259-10802379 1.98e-03 20_[+3(5.64e-05)]_82_[+2(1.27e-05)]_\ 2 chr3L:10659668-10659788 1.04e-02 39_[+1(4.48e-05)]_53_[+1(1.48e-05)]_\ 12 chr2L:16271569-16271689 9.11e-03 38_[+3(5.64e-05)]_74 chr2R:21048276-21048396 1.69e-02 71_[+1(1.48e-05)]_41 chrX:8650945-8651065 2.03e-02 17_[+3(1.38e-05)]_[+3(1.38e-05)]_14_\ [+3(1.38e-05)]_65 chr2L:15492142-15492262 3.56e-04 6_[+1(1.48e-05)]_20_[+3(1.38e-05)]_\ 16_[+3(1.38e-05)]_54 chr2R:19436944-19437064 8.06e-02 120 chr3L:13674771-13674891 1.68e-01 120 chr2R:13570928-13571048 9.28e-01 120 chr3L:7984845-7984965 5.76e-03 67_[+1(4.48e-05)]_24_[+5(7.90e-05)]_\ 13 chr3R:22041761-22041881 1.80e-02 43_[+1(8.95e-05)]_69 chr3L:2237334-2237454 8.85e-01 120 chr2L:6079049-6079169 6.46e-01 120 chr2R:21090663-21090783 1.22e-01 120 chr3R:16282239-16282359 1.83e-02 26_[+1(4.48e-05)]_86 chr2R:7486507-7486627 4.01e-03 20_[+1(4.48e-05)]_25_[+5(9.28e-05)]_\ 59 chr2L:4363875-4363995 3.08e-02 120 chr2R:11529692-11529812 1.06e-03 5_[+3(1.38e-05)]_50_[+1(4.48e-05)]_\ 49 chr2R:19631149-19631269 1.30e-01 12_[+4(1.84e-05)]_3_[+4(1.84e-05)]_\ 89 chr3R:7075125-7075245 1.43e-03 13_[+1(1.48e-05)]_18_[+1(4.48e-05)]_\ 73 chrX:8924921-8925041 2.32e-03 40_[+3(1.38e-05)]_10_[+3(4.20e-05)]_\ 4_[+3(2.79e-05)]_42 chr3L:7370468-7370588 4.37e-04 81_[+5(3.97e-05)]_23_[+1(4.48e-05)] chr3R:18919023-18919143 7.28e-02 120 chr3R:27148994-27149114 6.06e-02 120 chr2L:15435950-15436070 6.27e-03 96_[+2(2.56e-05)]_16 chr3L:17653297-17653417 3.59e-01 120 chr3R:5107053-5107173 9.85e-04 6_[+5(2.62e-05)]_63_[+4(7.28e-05)]_\ 35 chr2L:14517499-14517619 7.40e-03 5_[+4(7.28e-05)]_107 chr2L:7811814-7811934 1.97e-04 39_[+1(4.48e-05)]_10_[+3(2.79e-05)]_\ 18_[+2(7.86e-05)]_29 chr2R:12916481-12916601 1.29e-02 120 chr2R:20846072-20846192 4.25e-01 120 chr3L:12693015-12693135 8.25e-04 19_[+3(5.64e-05)]_10_[+1(7.45e-05)]_\ 40_[+2(7.86e-05)]_27 chr3R:9226956-9227076 3.32e-03 15_[+1(4.48e-05)]_97 chr3R:9529503-9529623 1.24e-01 77_[+4(7.28e-05)]_35 chr2R:12776154-12776274 6.51e-02 33_[+1(5.99e-05)]_79 chr2R:9694830-9694950 1.55e-01 87_[+1(4.48e-05)]_25 chr3R:26002547-26002667 9.57e-02 120 chr2L:14261954-14262074 3.35e-01 120 chr2L:17222229-17222349 1.23e-01 120 chr3R:30200302-30200422 2.64e-01 120 chr2R:6573554-6573674 1.68e-01 16_[+1(4.48e-05)]_96 chr3L:5932579-5932699 2.72e-01 120 chr3L:11384454-11384574 5.82e-01 120 chr3L:14131760-14131880 3.81e-02 120 chrX:15063828-15063948 6.68e-03 63_[+1(4.48e-05)]_7_[+4(3.75e-05)]_\ 34 chr3L:21216815-21216935 1.85e-01 120 chr2R:17477103-17477223 2.87e-01 41_[+1(7.45e-05)]_71 chr3L:8110338-8110458 2.32e-01 120 chr3R:19092581-19092701 3.75e-02 3_[+1(8.95e-05)]_109 chrX:18775089-18775209 2.46e-04 24_[+1(4.48e-05)]_23_[+3(2.79e-05)]_\ 57 chrX:19867075-19867195 2.87e-01 120 chr2R:6133373-6133493 6.55e-05 42_[+3(9.88e-05)]_27_[+2(3.90e-05)]_\ 18_[+1(4.48e-05)]_9 chr3R:7000781-7000901 2.34e-06 4_[+3(1.38e-05)]_12_[+3(2.79e-05)]_\ 4_[+1(5.99e-05)]_16_[+4(1.84e-05)]_52 chr3L:10898203-10898323 9.33e-02 120 chr2L:377955-378075 6.92e-05 20_[+3(2.79e-05)]_62_[+4(1.84e-05)]_\ 11_[+2(2.56e-05)]_3 chr3L:8347504-8347624 1.77e-02 120 chr3R:12648012-12648132 2.31e-02 120 chr2L:6722964-6723084 1.09e-02 45_[+5(3.97e-05)]_67 chr3R:20829971-20830091 9.02e-01 120 chr2R:11096398-11096518 9.01e-03 48_[+2(2.56e-05)]_64 chr3R:26006038-26006158 3.52e-02 120 chr2L:15432368-15432488 1.08e-01 120 chr3R:25626845-25626965 1.31e-02 120 chr2R:8655383-8655503 3.29e-02 30_[+1(7.45e-05)]_82 chr2L:12003082-12003202 7.09e-01 120 chr3L:6742368-6742488 3.51e-02 108_[+3(5.64e-05)]_4 chr2L:14490115-14490235 4.22e-02 55_[+1(5.99e-05)]_57 chr3L:20402804-20402924 2.16e-01 75_[+1(7.45e-05)]_37 chr3R:20829243-20829363 8.28e-02 120 chr2L:19867008-19867128 2.12e-01 120 chr2L:14443995-14444115 3.56e-02 111_[+5(1.32e-05)]_1 chrX:6678192-6678312 5.16e-02 28_[+4(9.18e-05)]_84 chrX:8063447-8063567 2.25e-04 54_[+4(1.84e-05)]_29_[+2(2.56e-05)]_\ 21 chr2L:15425745-15425865 1.07e-02 1_[+1(5.99e-05)]_19_[+1(4.48e-05)]_\ 84 chr3R:11368852-11368972 4.81e-01 120 chr2L:6081393-6081513 6.15e-02 89_[+1(8.95e-05)]_23 chr3R:26035246-26035366 1.10e-01 120 chr3L:21196722-21196842 7.11e-02 120 chrX:19268779-19268899 3.65e-02 120 chr2R:23567344-23567464 2.55e-02 9_[+2(3.90e-05)]_103 chrX:2073440-2073560 6.84e-02 120 chr3R:27239068-27239188 2.60e-02 120 chrX:11146861-11146981 9.91e-01 120 chr2L:14497805-14497925 1.07e-02 120 chr2L:19181796-19181916 2.76e-01 120 chr2R:24745992-24746112 5.72e-04 48_[+2(1.27e-05)]_64 chr3R:6350817-6350937 2.14e-01 120 chr3R:5021626-5021746 1.02e-01 120 chr3R:12986170-12986290 2.29e-01 120 chr2R:21663178-21663298 4.10e-01 120 chr3L:22402934-22403054 6.48e-01 120 chr3R:8801399-8801519 4.66e-01 120 chr2R:19669046-19669166 1.70e-01 120 chr2L:8163768-8163888 1.14e-04 18_[+2(1.27e-05)]_30_[+3(2.79e-05)]_\ 56 chr3R:14017780-14017900 2.49e-01 120 chr3R:14286978-14287098 1.90e-01 120 chr2L:1362339-1362459 1.72e-01 120 chr2R:17091846-17091966 1.65e-02 93_[+1(4.48e-05)]_19 chr2R:22657045-22657165 4.70e-02 120 chr3R:18399592-18399712 4.70e-01 120 chrX:15081179-15081299 4.80e-01 120 chr2R:9577958-9578078 1.86e-01 120 chr3L:18022629-18022749 9.00e-01 120 chr3L:19895726-19895846 4.09e-03 21_[+3(7.04e-05)]_91 chr3L:12350465-12350585 6.09e-01 120 chr3R:17811551-17811671 1.09e-01 76_[+5(1.32e-05)]_20_[+5(1.32e-05)]_\ 8 chr2L:13833074-13833194 1.22e-01 120 chr3R:6667305-6667425 4.87e-03 120 chr3L:15554350-15554470 5.09e-03 2_[+4(1.84e-05)]_17_[+1(1.48e-05)]_\ 10_[+1(1.48e-05)]_10_[+1(1.48e-05)]_18_[+4(1.84e-05)]_13_[+4(1.84e-05)]_2 chr3R:15973674-15973794 4.78e-02 120 chr2R:23573225-23573345 1.46e-03 95_[+3(1.38e-05)]_17 chr3R:4453695-4453815 3.81e-02 54_[+1(8.95e-05)]_58 chr3R:16255326-16255446 8.83e-02 120 chr2R:16828915-16829035 3.56e-03 13_[+4(7.28e-05)]_50_[+1(5.99e-05)]_\ 41 chr2R:22700843-22700963 7.61e-01 120 chrX:656138-656258 6.66e-02 13_[+2(3.90e-05)]_99 chr3R:31309369-31309489 1.34e-02 120 chrX:20503371-20503491 6.45e-01 120 chr3R:25445966-25446086 1.24e-02 88_[+1(1.48e-05)]_12_[+4(7.28e-05)]_\ 4 chr3R:24870834-24870954 2.36e-01 120 chr3R:15666191-15666311 2.36e-01 120 chr3R:18298358-18298478 2.88e-04 17_[+3(2.79e-05)]_44_[+4(1.84e-05)]_\ 43 chr3R:7037483-7037603 7.31e-04 24_[+3(9.88e-05)]_12_[+1(4.48e-05)]_\ 68 chr2R:12274356-12274476 1.39e-01 120 chr2R:7674345-7674465 2.71e-02 120 chr2R:24743674-24743794 7.87e-02 120 chr3R:16847376-16847496 4.87e-01 120 chr2R:14458360-14458480 7.75e-02 41_[+3(1.38e-05)]_[+3(4.20e-05)]_\ [+3(9.88e-05)]_55 chr2R:13561101-13561221 6.12e-02 26_[+5(7.90e-05)]_30_[+5(6.61e-05)]_\ 48 chr3R:13837940-13838060 4.04e-02 59_[+5(9.28e-05)]_53 chrX:8058517-8058637 6.01e-04 11_[+1(1.48e-05)]_85_[+5(2.62e-05)]_\ 8 chr3R:8269804-8269924 3.71e-03 56_[+4(3.75e-05)]_56 chr2L:14234041-14234161 4.69e-03 110_[+1(1.48e-05)]_2 chrX:14627251-14627371 4.18e-02 120 chr2L:22018890-22019010 1.38e-01 35_[+1(8.95e-05)]_77 chr3R:26436728-26436848 2.99e-02 95_[+5(3.97e-05)]_17 chrX:13253113-13253233 1.74e-01 120 chrX:6109966-6110086 9.16e-03 120 chr2L:2130261-2130381 1.27e-01 68_[+4(3.75e-05)]_9_[+4(1.84e-05)]_\ 27 chr2L:18881402-18881522 6.09e-02 31_[+1(1.48e-05)]_81 chr3R:26018280-26018400 3.15e-01 120 chr3L:6743714-6743834 4.57e-04 16_[+1(4.48e-05)]_47_[+5(6.61e-05)]_\ 27_[+5(3.97e-05)]_6 chr2L:15751120-15751240 9.14e-02 120 chr2R:20067270-20067390 2.20e-01 120 chr3L:9446751-9446871 1.70e-02 120 chr3R:29148219-29148339 5.88e-02 101_[+1(4.48e-05)]_11 chr2L:19135054-19135174 2.69e-03 120 chr2L:18150626-18150746 2.09e-02 56_[+4(1.84e-05)]_56 chr3L:8689836-8689956 2.78e-02 8_[+4(9.18e-05)]_104 chr2L:5245635-5245755 1.10e-03 60_[+2(3.90e-05)]_22_[+1(7.45e-05)]_\ 22 chr3R:7977682-7977802 6.15e-01 120 chr3R:23387103-23387223 5.33e-01 120 chr2L:9938748-9938868 4.51e-03 120 chr2L:12027264-12027384 1.13e-02 20_[+4(1.84e-05)]_92 chrX:19750828-19750948 6.80e-01 120 chrX:5883492-5883612 8.04e-01 120 chr3R:10868519-10868639 3.35e-02 66_[+1(4.48e-05)]_46 chr2L:18567697-18567817 1.33e-02 17_[+4(3.75e-05)]_95 chr2R:24402712-24402832 7.51e-02 93_[+1(5.99e-05)]_19 chr2L:2885198-2885318 1.24e-01 120 chr3R:21161762-21161882 1.47e-01 86_[+2(7.86e-05)]_26 chrX:16782175-16782295 7.77e-05 35_[+1(4.48e-05)]_26_[+5(2.62e-05)]_\ 15_[+2(1.27e-05)]_20 chr2R:22670702-22670822 3.48e-02 112_[+4(3.75e-05)] chr2L:13060076-13060196 6.34e-02 83_[+1(1.48e-05)]_29 chr3R:16099866-16099986 1.44e-01 120 chr2R:24086624-24086744 4.40e-04 61_[+5(6.61e-05)]_31_[+1(8.95e-05)]_\ 12 chrX:19751028-19751148 1.49e-01 120 chrX:7604540-7604660 8.94e-03 4_[+4(1.84e-05)]_108 chr3L:772315-772435 3.17e-01 120 chr3L:4825747-4825867 8.63e-01 120 chrX:2136482-2136602 6.48e-02 120 chr3L:16770008-16770128 1.14e-02 120 chr2R:21282401-21282521 9.88e-03 81_[+4(7.28e-05)]_31 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************