******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/cyc.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:4180077-4180197 1.0000 120 chr3R:14917942-14918062 1.0000 120 chr3R:14399497-14399617 1.0000 120 chr3R:18787344-18787464 1.0000 120 chr3R:16985710-16985830 1.0000 120 chr3L:3246931-3247051 1.0000 120 chr3R:30689782-30689902 1.0000 120 chr3L:10359530-10359650 1.0000 120 chr3R:26192415-26192535 1.0000 120 chr3L:1408282-1408402 1.0000 120 chr2R:23248949-23249069 1.0000 120 chrX:1897488-1897608 1.0000 120 chr3L:785857-785977 1.0000 120 chr3R:8272748-8272868 1.0000 120 chr3L:8368800-8368920 1.0000 120 chr3L:1458162-1458282 1.0000 120 chr2R:18610474-18610594 1.0000 120 chrX:4435356-4435476 1.0000 120 chr2L:16843418-16843538 1.0000 120 chr3L:764472-764592 1.0000 120 chr2R:20136854-20136974 1.0000 120 chrX:6030134-6030254 1.0000 120 chrX:17172265-17172385 1.0000 120 chr3L:10928904-10929024 1.0000 120 chr3L:8763905-8764025 1.0000 120 chr3R:31424548-31424668 1.0000 120 chr2R:23433952-23434072 1.0000 120 chr3R:31308969-31309089 1.0000 120 chr3R:23148531-23148651 1.0000 120 chr3L:9419506-9419626 1.0000 120 chr2R:20876274-20876394 1.0000 120 chr3R:8968967-8969087 1.0000 120 chrX:3060242-3060362 1.0000 120 chrX:18834541-18834661 1.0000 120 chr2L:20802331-20802451 1.0000 120 chrX:7541537-7541657 1.0000 120 chr3R:13793464-13793584 1.0000 120 chr2R:23022640-23022760 1.0000 120 chr2R:24541085-24541205 1.0000 120 chr3L:21594528-21594648 1.0000 120 chr3R:10527579-10527699 1.0000 120 chr3L:10709252-10709372 1.0000 120 chr2R:16685733-16685853 1.0000 120 chrX:9892985-9893105 1.0000 120 chrX:5044562-5044682 1.0000 120 chr3L:12420563-12420683 1.0000 120 chr2R:23225213-23225333 1.0000 120 chr3L:11536285-11536405 1.0000 120 chr3R:14398057-14398177 1.0000 120 chr2L:15275934-15276054 1.0000 120 chr2L:11326515-11326635 1.0000 120 chr2L:7175911-7176031 1.0000 120 chr3L:388276-388396 1.0000 120 chrX:2452896-2453016 1.0000 120 chrX:3147149-3147269 1.0000 120 chr2L:7619385-7619505 1.0000 120 chr3R:29538551-29538671 1.0000 120 chrX:13541322-13541442 1.0000 120 chr2L:7573366-7573486 1.0000 120 chr2L:650985-651105 1.0000 120 chr3L:761854-761974 1.0000 120 chrX:15027108-15027228 1.0000 120 chrX:14750593-14750713 1.0000 120 chr2R:19187349-19187469 1.0000 120 chr2R:19647738-19647858 1.0000 120 chr3L:9742462-9742582 1.0000 120 chrX:5026795-5026915 1.0000 120 chr2R:10237722-10237842 1.0000 120 chrX:17550438-17550558 1.0000 120 chr3L:14253597-14253717 1.0000 120 chr2L:10791448-10791568 1.0000 120 chr2R:12013448-12013568 1.0000 120 chrX:7558772-7558892 1.0000 120 chr3R:25461824-25461944 1.0000 120 chr3R:9934976-9935096 1.0000 120 chr2L:19905356-19905476 1.0000 120 chrX:17760636-17760756 1.0000 120 chrX:6574613-6574733 1.0000 120 chr3L:6220330-6220450 1.0000 120 chr3L:15188831-15188951 1.0000 120 chr3L:6359330-6359450 1.0000 120 chr2R:19849255-19849375 1.0000 120 chrX:13221404-13221524 1.0000 120 chrX:20509664-20509784 1.0000 120 chr3R:11937584-11937704 1.0000 120 chr2L:382926-383046 1.0000 120 chr2R:10771991-10772111 1.0000 120 chr2L:14499188-14499308 1.0000 120 chr3L:1031037-1031157 1.0000 120 chr3R:10579682-10579802 1.0000 120 chr2R:24338999-24339119 1.0000 120 chr3R:11859666-11859786 1.0000 120 chr3R:11947234-11947354 1.0000 120 chr3R:9913547-9913667 1.0000 120 chr3L:12706596-12706716 1.0000 120 chr3R:8142233-8142353 1.0000 120 chrX:3437634-3437754 1.0000 120 chrX:14897770-14897890 1.0000 120 chr3R:8116098-8116218 1.0000 120 chr3L:15544597-15544717 1.0000 120 chrX:13278169-13278289 1.0000 120 chr3L:5867030-5867150 1.0000 120 chr2R:18308293-18308413 1.0000 120 chr2R:10599130-10599250 1.0000 120 chr3R:31718309-31718429 1.0000 120 chr3R:4961587-4961707 1.0000 120 chr2R:19153380-19153500 1.0000 120 chr3R:15566479-15566599 1.0000 120 chr3L:15102029-15102149 1.0000 120 chrX:2788685-2788805 1.0000 120 chrX:739958-740078 1.0000 120 chrX:1320534-1320654 1.0000 120 chr3L:12030662-12030782 1.0000 120 chr2L:14247966-14248086 1.0000 120 chr3L:3074545-3074665 1.0000 120 chr3L:13263930-13264050 1.0000 120 chrX:18256675-18256795 1.0000 120 chr3R:24996619-24996739 1.0000 120 chr2L:11328475-11328595 1.0000 120 chr3L:17608674-17608794 1.0000 120 chr3L:1087468-1087588 1.0000 120 chr3L:16183215-16183335 1.0000 120 chr3L:18193790-18193910 1.0000 120 chr3R:29762477-29762597 1.0000 120 chr2R:14485459-14485579 1.0000 120 chrX:14073637-14073757 1.0000 120 chr3L:18198856-18198976 1.0000 120 chrX:10104603-10104723 1.0000 120 chr3R:27171237-27171357 1.0000 120 chr3L:2838312-2838432 1.0000 120 chr3L:11365846-11365966 1.0000 120 chr3L:14622543-14622663 1.0000 120 chrX:8601294-8601414 1.0000 120 chr2L:15459060-15459180 1.0000 120 chr3R:11888363-11888483 1.0000 120 chr2R:6969524-6969644 1.0000 120 chr3L:14083415-14083535 1.0000 120 chr2R:19615981-19616101 1.0000 120 chr2R:12741717-12741837 1.0000 120 chr2R:14975262-14975382 1.0000 120 chr3L:20552048-20552168 1.0000 120 chr3L:6871426-6871546 1.0000 120 chr3R:31059815-31059935 1.0000 120 chr3L:4383250-4383370 1.0000 120 chr2R:10600516-10600636 1.0000 120 chr3L:4619954-4620074 1.0000 120 chr3L:11298424-11298544 1.0000 120 chr3L:11297650-11297770 1.0000 120 chr3R:25633986-25634106 1.0000 120 chr3L:10794010-10794130 1.0000 120 chr3R:23486861-23486981 1.0000 120 chrX:6059278-6059398 1.0000 120 chrX:22479569-22479689 1.0000 120 chr3R:27593294-27593414 1.0000 120 chrX:5923272-5923392 1.0000 120 chr3R:10530695-10530815 1.0000 120 chr3R:17202475-17202595 1.0000 120 chrX:5026167-5026287 1.0000 120 chr3R:30501331-30501451 1.0000 120 chr3R:29786586-29786706 1.0000 120 chr2L:11306245-11306365 1.0000 120 chr3R:30280465-30280585 1.0000 120 chr3R:11872857-11872977 1.0000 120 chr3R:20286211-20286331 1.0000 120 chr3R:31505284-31505404 1.0000 120 chr2L:9438340-9438460 1.0000 120 chr3L:3513210-3513330 1.0000 120 chr3L:818504-818624 1.0000 120 chr3R:21935299-21935419 1.0000 120 chr3L:728031-728151 1.0000 120 chr2L:7199719-7199839 1.0000 120 chrX:4175951-4176071 1.0000 120 chrX:5025447-5025567 1.0000 120 chr2R:6556933-6557053 1.0000 120 chr2L:3554047-3554167 1.0000 120 chr2R:23299454-23299574 1.0000 120 chr2R:9497109-9497229 1.0000 120 chrX:3411965-3412085 1.0000 120 chr2L:8229762-8229882 1.0000 120 chr3L:6371510-6371630 1.0000 120 chr3L:7264186-7264306 1.0000 120 chrX:9251419-9251539 1.0000 120 chr2R:20065633-20065753 1.0000 120 chr2L:675051-675171 1.0000 120 chr3R:27140044-27140164 1.0000 120 chrX:2270089-2270209 1.0000 120 chr2R:24548146-24548266 1.0000 120 chr2R:19969841-19969961 1.0000 120 chr3L:7792307-7792427 1.0000 120 chr3R:13941557-13941677 1.0000 120 chr2L:1668869-1668989 1.0000 120 chr3R:5103683-5103803 1.0000 120 chr3R:31680003-31680123 1.0000 120 chrX:12015150-12015270 1.0000 120 chr3R:27186303-27186423 1.0000 120 chr3R:21887624-21887744 1.0000 120 chr3L:12058567-12058687 1.0000 120 chr3L:664014-664134 1.0000 120 chr3L:7783492-7783612 1.0000 120 chr3R:18742494-18742614 1.0000 120 chrX:2648104-2648224 1.0000 120 chr3L:18038261-18038381 1.0000 120 chr2L:1362382-1362502 1.0000 120 chrX:11925373-11925493 1.0000 120 chr2L:423313-423433 1.0000 120 chr2R:15513564-15513684 1.0000 120 chr3R:11154056-11154176 1.0000 120 chr3L:777423-777543 1.0000 120 chr3R:30076216-30076336 1.0000 120 chr3L:17502373-17502493 1.0000 120 chr2R:21850495-21850615 1.0000 120 chr2L:7992051-7992171 1.0000 120 chr2L:15304481-15304601 1.0000 120 chr3L:2549086-2549206 1.0000 120 chr2R:9557597-9557717 1.0000 120 chr2R:24629563-24629683 1.0000 120 chr3L:2879899-2880019 1.0000 120 chrX:17490024-17490144 1.0000 120 chr2L:14598406-14598526 1.0000 120 chr2R:18891014-18891134 1.0000 120 chrX:7945529-7945649 1.0000 120 chr2L:11222242-11222362 1.0000 120 chr2L:5249893-5250013 1.0000 120 chr2L:5493081-5493201 1.0000 120 chr3L:660440-660560 1.0000 120 chr2R:11515898-11516018 1.0000 120 chr3L:1388259-1388379 1.0000 120 chr2R:21587255-21587375 1.0000 120 chr3L:2802197-2802317 1.0000 120 chr3R:5100474-5100594 1.0000 120 chr3R:11974699-11974819 1.0000 120 chrX:6791645-6791765 1.0000 120 chr3L:1829694-1829814 1.0000 120 chr3R:21837211-21837331 1.0000 120 chr3R:28633912-28634032 1.0000 120 chr3L:21099197-21099317 1.0000 120 chr2R:12742669-12742789 1.0000 120 chr3R:23297659-23297779 1.0000 120 chr2R:6994764-6994884 1.0000 120 chr2L:18645579-18645699 1.0000 120 chr3R:6950211-6950331 1.0000 120 chr3L:12616560-12616680 1.0000 120 chr2R:12532750-12532870 1.0000 120 chr3L:800269-800389 1.0000 120 chrX:13312315-13312435 1.0000 120 chrX:16761636-16761756 1.0000 120 chr2R:16156427-16156547 1.0000 120 chr2L:9828997-9829117 1.0000 120 chr3R:23888794-23888914 1.0000 120 chr2L:7376318-7376438 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_cyc/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/cyc.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.333 C 0.166 G 0.165 T 0.336 Background letter frequencies (from file dataset with add-one prior applied): A 0.332 C 0.166 G 0.165 T 0.336 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SCACTGYR MEME-1 width = 8 sites = 53 llr = 417 E-value = 8.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCACTGYR MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a:2:25 pos.-specific C 3a:7::22 probability G 7::3:a13 matrix T ::::8:51 bits 2.6 * * 2.3 * * 2.1 * * 1.8 * * * Relative 1.6 **** * Entropy 1.3 **** * (11.4 bits) 1.0 **** * 0.8 ****** 0.5 ****** 0.3 ******** 0.0 -------- Multilevel GCACTGTA consensus C GA CG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACTGYR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14073637-14073757 8 6.93e-06 CTCAAAT GCACTGCG AGAAATGCAG chr2R:6994764-6994884 107 2.09e-05 GTTACGAAAC GCACTGTA CGTGCA chr3L:7264186-7264306 18 2.09e-05 TGCAACACGT GCACTGCA TTCGCACACA chr2R:10600516-10600636 75 2.09e-05 CCGCTGAAAC GCACTGTA TGGTCAGGGC chr3R:31059815-31059935 51 2.09e-05 CACTGTATAA GCACTGTA AGTCAAATTG chr3L:21594528-21594648 30 2.79e-05 AATAAGCGGT GCACTGTC CCGCTCAGGC chr2L:675051-675171 103 3.48e-05 TTTTAAGGTG CCACTGTG TTTTTTTTTT chr3L:660440-660560 12 5.34e-05 TACCAATAAA GCACTGAG AGAAATGTTA chr2L:5493081-5493201 108 5.34e-05 TTCTTTGAGT GCACTGAG CTGGT chr2L:11222242-11222362 103 5.34e-05 ATCATTGGTT CCACTGTA CCTATCCTTT chr2R:12741717-12741837 106 5.34e-05 GGCAGAAGCT CCACTGTA CTGCGAA chrX:17760636-17760756 20 5.34e-05 GGCAACAGCT GCACTGAG CGAAAAAATG chr3L:5867030-5867150 19 6.27e-05 AGGCTATCTT GCACTGAA AAAGTTACTG chrX:13221404-13221524 1 6.27e-05 . GCACTGAA ACAAAATCCC chr2L:650985-651105 18 6.27e-05 AAGGAAGGCT GCACTGAA AAAATTTTTG chr3R:18742494-18742614 89 8.34e-05 TCCAATTTTT GCAGTGCA CCTGTGCAGA chr3R:29786586-29786706 108 8.34e-05 GCCATTTCTC GCAGTGCA TTTTG chr3L:18193790-18193910 102 8.34e-05 AACCTTTTGA GCAGTGCA GGGTACAAAA chrX:3060242-3060362 68 8.34e-05 TTCAAATGAC GCAGTGTA CATATAAGCG chr3R:31424548-31424668 12 8.34e-05 TATGTAAGCT GCAGTGTA GCTTCAGGCA chr3L:17502373-17502493 101 9.04e-05 ACAAAGAGTT CCACTGTC TGCCCAAAAT chrX:6030134-6030254 97 9.04e-05 TACAATGTTA CCACTGCC ACTTTAACAA chr2R:11515898-11516018 108 1.02e-04 CCTTCTTTTC GCACAGTG CACAT chr3L:11365846-11365966 19 1.02e-04 ATTGGAGCTG GCACAGTG GGGCCAACGA chr3L:6220330-6220450 14 1.02e-04 TTACTGACTT GCACAGTG AGGCAAGTCC chr2R:18891014-18891134 42 1.20e-04 ATTTGGAGGA GCACAGCA CTTAAAGTTT chr2L:9438340-9438460 95 1.20e-04 GATCGACTAT GCACAGTA TAATATTGCA chr2R:18308293-18308413 44 1.20e-04 AAGCTGTTTC GCACAGTA ATGAGTCTCA chr2R:9497109-9497229 105 1.39e-04 ACCTTTTCTC GCAGTGTC GTACATAT chr3R:11947234-11947354 90 1.39e-04 CTACAACAGC CCACTGAA AGTTTGTGCC chr2R:12013448-12013568 40 1.39e-04 ATGTAATATT CCACTGAA AGTTTATGGC chr3R:14398057-14398177 68 1.39e-04 AACAATTATT CCACTGAA TAATGTATTC chr2L:4180077-4180197 9 1.39e-04 ATAGCAAG GCACTGGG AGAAAATCTT chr3L:6371510-6371630 69 1.64e-04 TTAGAGTATA GCACTGTT ATTTAGTAAA chr2L:14499188-14499308 76 1.64e-04 GGTATATATT CCAGTGCG CCTCAACATT chrX:11925373-11925493 95 1.83e-04 AATTTGTTAG CCAGTGTA AATTGGCCAA chr3L:1087468-1087588 110 1.83e-04 CAAATTTTTT CCAGTGta cag chr2R:23225213-23225333 107 1.83e-04 CTAATTTTGC CCAGTGTA TTTTGC chr3R:14399497-14399617 59 1.83e-04 TTAAGGGCAA GCAGTGAG TCTTCGAGCA chr2L:7992051-7992171 39 1.99e-04 ATGAAATTAA GCACAGCC TAATAATTTT chr3R:31718309-31718429 39 1.99e-04 AAAATGTGCT GCACAGTC TATATAAATC chr3R:27186303-27186423 6 2.11e-04 CCCAT CCACAGTG GAACCTGCCT chr2L:5249893-5250013 32 2.31e-04 TGGTCAGGAT GCACTGGC AGAAATTGTA chr3R:30076216-30076336 3 2.31e-04 TC CCACAGTA ATTTCCTTTT chr3R:31308969-31309089 9 2.31e-04 TTAATGTT GCACAGAG AGATTTTAGA chrX:2270089-2270209 112 2.80e-04 CGCCGAGGCT CCACTGTT C chrX:4175951-4176071 78 2.80e-04 AGTGTACTTG CCACTGCT TATCCTGCTC chr3R:10530695-10530815 80 2.80e-04 TTCTCACAAA GCAGAGCG TATAGCTTAT chrX:739958-740078 29 2.80e-04 TCTGGCGGAA CCACTGTT CACTAAATAA chrX:13541322-13541442 5 2.80e-04 GCCA CCACTGCT CTTTTTGCTA chr2R:20136854-20136974 74 2.80e-04 TGGCCAAAGT GCAGTGAC CTCTTACAAA chr2R:12742669-12742789 111 3.49e-04 tCGGTCAAGT GCAGTGCT GC chrX:2648104-2648224 29 3.49e-04 ATCTCCCAGC GCAGTGGA GCCAAAGTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACTGYR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14073637-14073757 6.9e-06 7_[+1]_105 chr2R:6994764-6994884 2.1e-05 106_[+1]_6 chr3L:7264186-7264306 2.1e-05 17_[+1]_95 chr2R:10600516-10600636 2.1e-05 74_[+1]_38 chr3R:31059815-31059935 2.1e-05 50_[+1]_62 chr3L:21594528-21594648 2.8e-05 29_[+1]_83 chr2L:675051-675171 3.5e-05 102_[+1]_10 chr3L:660440-660560 5.3e-05 11_[+1]_101 chr2L:5493081-5493201 5.3e-05 107_[+1]_5 chr2L:11222242-11222362 5.3e-05 102_[+1]_10 chr2R:12741717-12741837 5.3e-05 105_[+1]_7 chrX:17760636-17760756 5.3e-05 19_[+1]_93 chr3L:5867030-5867150 6.3e-05 18_[+1]_94 chrX:13221404-13221524 6.3e-05 [+1]_112 chr2L:650985-651105 6.3e-05 17_[+1]_95 chr3R:18742494-18742614 8.3e-05 88_[+1]_24 chr3R:29786586-29786706 8.3e-05 107_[+1]_5 chr3L:18193790-18193910 8.3e-05 101_[+1]_11 chrX:3060242-3060362 8.3e-05 67_[+1]_45 chr3R:31424548-31424668 8.3e-05 11_[+1]_101 chr3L:17502373-17502493 9e-05 100_[+1]_12 chrX:6030134-6030254 9e-05 96_[+1]_16 chr2R:11515898-11516018 0.0001 107_[+1]_5 chr3L:11365846-11365966 0.0001 18_[+1]_94 chr3L:6220330-6220450 0.0001 13_[+1]_99 chr2R:18891014-18891134 0.00012 41_[+1]_71 chr2L:9438340-9438460 0.00012 94_[+1]_18 chr2R:18308293-18308413 0.00012 43_[+1]_69 chr2R:9497109-9497229 0.00014 104_[+1]_8 chr3R:11947234-11947354 0.00014 89_[+1]_23 chr2R:12013448-12013568 0.00014 39_[+1]_73 chr3R:14398057-14398177 0.00014 67_[+1]_45 chr2L:4180077-4180197 0.00014 8_[+1]_104 chr3L:6371510-6371630 0.00016 68_[+1]_44 chr2L:14499188-14499308 0.00016 75_[+1]_37 chrX:11925373-11925493 0.00018 94_[+1]_18 chr3L:1087468-1087588 0.00018 109_[+1]_3 chr2R:23225213-23225333 0.00018 106_[+1]_6 chr3R:14399497-14399617 0.00018 58_[+1]_54 chr2L:7992051-7992171 0.0002 38_[+1]_74 chr3R:31718309-31718429 0.0002 38_[+1]_74 chr3R:27186303-27186423 0.00021 5_[+1]_107 chr2L:5249893-5250013 0.00023 31_[+1]_81 chr3R:30076216-30076336 0.00023 2_[+1]_110 chr3R:31308969-31309089 0.00023 8_[+1]_104 chrX:2270089-2270209 0.00028 111_[+1]_1 chrX:4175951-4176071 0.00028 77_[+1]_35 chr3R:10530695-10530815 0.00028 79_[+1]_33 chrX:739958-740078 0.00028 28_[+1]_84 chrX:13541322-13541442 0.00028 4_[+1]_108 chr2R:20136854-20136974 0.00028 73_[+1]_39 chr2R:12742669-12742789 0.00035 110_[+1]_2 chrX:2648104-2648224 0.00035 28_[+1]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACTGYR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCACTGYR width=8 seqs=53 chrX:14073637-14073757 ( 8) GCACTGCG 1 chr2R:6994764-6994884 ( 107) GCACTGTA 1 chr3L:7264186-7264306 ( 18) GCACTGCA 1 chr2R:10600516-10600636 ( 75) GCACTGTA 1 chr3R:31059815-31059935 ( 51) GCACTGTA 1 chr3L:21594528-21594648 ( 30) GCACTGTC 1 chr2L:675051-675171 ( 103) CCACTGTG 1 chr3L:660440-660560 ( 12) GCACTGAG 1 chr2L:5493081-5493201 ( 108) GCACTGAG 1 chr2L:11222242-11222362 ( 103) CCACTGTA 1 chr2R:12741717-12741837 ( 106) CCACTGTA 1 chrX:17760636-17760756 ( 20) GCACTGAG 1 chr3L:5867030-5867150 ( 19) GCACTGAA 1 chrX:13221404-13221524 ( 1) GCACTGAA 1 chr2L:650985-651105 ( 18) GCACTGAA 1 chr3R:18742494-18742614 ( 89) GCAGTGCA 1 chr3R:29786586-29786706 ( 108) GCAGTGCA 1 chr3L:18193790-18193910 ( 102) GCAGTGCA 1 chrX:3060242-3060362 ( 68) GCAGTGTA 1 chr3R:31424548-31424668 ( 12) GCAGTGTA 1 chr3L:17502373-17502493 ( 101) CCACTGTC 1 chrX:6030134-6030254 ( 97) CCACTGCC 1 chr2R:11515898-11516018 ( 108) GCACAGTG 1 chr3L:11365846-11365966 ( 19) GCACAGTG 1 chr3L:6220330-6220450 ( 14) GCACAGTG 1 chr2R:18891014-18891134 ( 42) GCACAGCA 1 chr2L:9438340-9438460 ( 95) GCACAGTA 1 chr2R:18308293-18308413 ( 44) GCACAGTA 1 chr2R:9497109-9497229 ( 105) GCAGTGTC 1 chr3R:11947234-11947354 ( 90) CCACTGAA 1 chr2R:12013448-12013568 ( 40) CCACTGAA 1 chr3R:14398057-14398177 ( 68) CCACTGAA 1 chr2L:4180077-4180197 ( 9) GCACTGGG 1 chr3L:6371510-6371630 ( 69) GCACTGTT 1 chr2L:14499188-14499308 ( 76) CCAGTGCG 1 chrX:11925373-11925493 ( 95) CCAGTGTA 1 chr3L:1087468-1087588 ( 110) CCAGTGTA 1 chr2R:23225213-23225333 ( 107) CCAGTGTA 1 chr3R:14399497-14399617 ( 59) GCAGTGAG 1 chr2L:7992051-7992171 ( 39) GCACAGCC 1 chr3R:31718309-31718429 ( 39) GCACAGTC 1 chr3R:27186303-27186423 ( 6) CCACAGTG 1 chr2L:5249893-5250013 ( 32) GCACTGGC 1 chr3R:30076216-30076336 ( 3) CCACAGTA 1 chr3R:31308969-31309089 ( 9) GCACAGAG 1 chrX:2270089-2270209 ( 112) CCACTGTT 1 chrX:4175951-4176071 ( 78) CCACTGCT 1 chr3R:10530695-10530815 ( 80) GCAGAGCG 1 chrX:739958-740078 ( 29) CCACTGTT 1 chrX:13541322-13541442 ( 5) CCACTGCT 1 chr2R:20136854-20136974 ( 74) GCAGTGAC 1 chr2R:12742669-12742789 ( 111) GCAGTGCT 1 chrX:2648104-2648224 ( 29) GCAGTGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACTGYR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.6062 E= 8.5e+000 -1237 103 200 -1237 -1237 259 -1237 -1237 159 -1237 -1237 -1237 -1237 211 78 -1237 -55 -1237 -1237 120 -1237 -1237 260 -1237 -55 56 -154 49 50 -14 68 -157 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACTGYR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 8.5e+000 0.000000 0.339623 0.660377 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.716981 0.283019 0.000000 0.226415 0.000000 0.000000 0.773585 0.000000 0.000000 1.000000 0.000000 0.226415 0.245283 0.056604 0.471698 0.471698 0.150943 0.264151 0.113208 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACTGYR MEME-1 regular expression -------------------------------------------------------------------------------- [GC]CA[CG][TA]G[TCA][AG] -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGSTGGG MEME-2 width = 8 sites = 5 llr = 61 E-value = 2.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGSTGGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 8::6:::: probability G 2aa42aaa matrix T ::::8::: bits 2.6 ** *** 2.3 ** *** 2.1 ** *** 1.8 *** *** Relative 1.6 **** *** Entropy 1.3 **** *** (17.5 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGGCTGGG consensus G GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGSTGGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:4435356-4435476 18 1.13e-06 GGATCAACGA CGGCTGGG TTCAAATATA chrX:16761636-16761756 51 2.26e-06 GTGGCGCCCA CGGGTGGG CATTTCACTA chr3L:11365846-11365966 37 2.26e-06 GGGCCAACGA CGGGTGGG GGATAGTAAC chr3R:5103683-5103803 52 2.81e-06 TACAGCAAAA CGGCGGGG TCATGAAGCT chrX:7541537-7541657 15 4.49e-06 CTGGAAGGGG GGGCTGGG GAATAGAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGSTGGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4435356-4435476 1.1e-06 17_[+2]_95 chrX:16761636-16761756 2.3e-06 50_[+2]_62 chr3L:11365846-11365966 2.3e-06 36_[+2]_76 chr3R:5103683-5103803 2.8e-06 51_[+2]_61 chrX:7541537-7541657 4.5e-06 14_[+2]_98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGSTGGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGSTGGG width=8 seqs=5 chrX:4435356-4435476 ( 18) CGGCTGGG 1 chrX:16761636-16761756 ( 51) CGGGTGGG 1 chr3L:11365846-11365966 ( 37) CGGGTGGG 1 chr3R:5103683-5103803 ( 52) CGGCGGGG 1 chrX:7541537-7541657 ( 15) GGGCTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGSTGGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 2.0e+003 -897 226 28 -897 -897 -897 260 -897 -897 -897 260 -897 -897 185 127 -897 -897 -897 28 125 -897 -897 260 -897 -897 -897 260 -897 -897 -897 260 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGSTGGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.0e+003 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGSTGGG MEME-2 regular expression -------------------------------------------------------------------------------- [CG]GG[CG][TG]GGG -------------------------------------------------------------------------------- Time 13.53 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGCGCGT MEME-3 width = 8 sites = 2 llr = 27 E-value = 9.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGCGCGT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::a:a:: probability G :aa:a:a: matrix T :::::::a bits 2.6 ******* 2.3 ******* 2.1 ******* 1.8 ******* Relative 1.6 ******** Entropy 1.3 ******** (19.7 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGGCGCGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCGCGT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:18256675-18256795 68 1.14e-06 ATTCAGCAGT CGGCGCGT CAGCTGGAAC chrX:6030134-6030254 50 1.14e-06 TCGAATAAGG CGGCGCGT CAATGATGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCGCGT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:18256675-18256795 1.1e-06 67_[+3]_45 chrX:6030134-6030254 1.1e-06 49_[+3]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCGCGT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGCGCGT width=8 seqs=2 chrX:18256675-18256795 ( 68) CGGCGCGT 1 chrX:6030134-6030254 ( 50) CGGCGCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCGCGT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 9.8e+003 -765 258 -765 -765 -765 -765 259 -765 -765 -765 259 -765 -765 258 -765 -765 -765 -765 259 -765 -765 258 -765 -765 -765 -765 259 -765 -765 -765 -765 157 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCGCGT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 9.8e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCGCGT MEME-3 regular expression -------------------------------------------------------------------------------- CGGCGCGT -------------------------------------------------------------------------------- Time 19.68 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGCGCC MEME-4 width = 8 sites = 2 llr = 27 E-value = 9.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::a:aa probability G a:aa:a:: matrix T :a:::::: bits 2.6 * ****** 2.3 * ****** 2.1 * ****** 1.8 * ****** Relative 1.6 ******** Entropy 1.3 ******** (19.7 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGGCGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16761636-16761756 41 1.14e-06 TTCAAAACTT GTGGCGCC CACGGGTGGG chr2L:1362382-1362502 22 1.14e-06 GATTCCGTTT GTGGCGCC ATCTCTTCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16761636-16761756 1.1e-06 40_[+4]_72 chr2L:1362382-1362502 1.1e-06 21_[+4]_91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGCGCC width=8 seqs=2 chrX:16761636-16761756 ( 41) GTGGCGCC 1 chr2L:1362382-1362502 ( 22) GTGGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 9.8e+003 -765 -765 259 -765 -765 -765 -765 157 -765 -765 259 -765 -765 -765 259 -765 -765 258 -765 -765 -765 -765 259 -765 -765 258 -765 -765 -765 258 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 9.8e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 regular expression -------------------------------------------------------------------------------- GTGGCGCC -------------------------------------------------------------------------------- Time 25.89 secs. ******************************************************************************** ******************************************************************************** MOTIF CGAAGGGG MEME-5 width = 8 sites = 2 llr = 26 E-value = 1.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGAAGGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::aa:::: pos.-specific C a::::::: probability G :a::aaaa matrix T :::::::: bits 2.6 ** **** 2.3 ** **** 2.1 ** **** 1.8 ** **** Relative 1.6 ******** Entropy 1.3 ******** (18.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGAAGGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAAGGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:11154056-11154176 104 2.24e-06 AAGAGTAGTG CGAAGGGG TGGAAATGC chr2R:10771991-10772111 20 2.24e-06 AAGCTGAAAC CGAAGGGG GAATACCCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAAGGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:11154056-11154176 2.2e-06 103_[+5]_9 chr2R:10771991-10772111 2.2e-06 19_[+5]_93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAAGGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGAAGGGG width=8 seqs=2 chr3R:11154056-11154176 ( 104) CGAAGGGG 1 chr2R:10771991-10772111 ( 20) CGAAGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAAGGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.7e+004 -765 258 -765 -765 -765 -765 259 -765 158 -765 -765 -765 158 -765 -765 -765 -765 -765 259 -765 -765 -765 259 -765 -765 -765 259 -765 -765 -765 259 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAAGGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.7e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAAGGGG MEME-5 regular expression -------------------------------------------------------------------------------- CGAAGGGG -------------------------------------------------------------------------------- Time 32.08 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:4180077-4180197 9.78e-02 120 chr3R:14917942-14918062 7.58e-01 120 chr3R:14399497-14399617 2.94e-02 120 chr3R:18787344-18787464 8.06e-01 120 chr3R:16985710-16985830 1.15e-01 120 chr3L:3246931-3247051 9.96e-01 120 chr3R:30689782-30689902 1.00e+00 120 chr3L:10359530-10359650 4.37e-01 120 chr3R:26192415-26192535 6.70e-01 120 chr3L:1408282-1408402 6.41e-01 120 chr2R:23248949-23249069 7.85e-01 120 chrX:1897488-1897608 4.55e-01 120 chr3L:785857-785977 9.89e-01 120 chr3R:8272748-8272868 7.55e-01 120 chr3L:8368800-8368920 1.08e-01 120 chr3L:1458162-1458282 8.36e-01 120 chr2R:18610474-18610594 9.94e-01 120 chrX:4435356-4435476 6.26e-04 17_[+2(1.13e-06)]_95 chr2L:16843418-16843538 9.35e-01 120 chr3L:764472-764592 8.64e-01 120 chr2R:20136854-20136974 1.13e-01 120 chrX:6030134-6030254 1.58e-05 49_[+3(1.14e-06)]_39_[+1(9.04e-05)]_\ 16 chrX:17172265-17172385 9.25e-01 120 chr3L:10928904-10929024 9.42e-01 120 chr3L:8763905-8764025 5.64e-01 120 chr3R:31424548-31424668 5.74e-02 11_[+1(8.34e-05)]_101 chr2R:23433952-23434072 2.48e-01 120 chr3R:31308969-31309089 1.83e-01 120 chr3R:23148531-23148651 2.36e-04 67_[+4(4.36e-05)]_45 chr3L:9419506-9419626 2.10e-01 120 chr2R:20876274-20876394 6.63e-01 120 chr3R:8968967-8969087 9.95e-01 120 chrX:3060242-3060362 3.87e-02 67_[+1(8.34e-05)]_45 chrX:18834541-18834661 9.54e-01 120 chr2L:20802331-20802451 6.23e-01 120 chrX:7541537-7541657 1.80e-04 6_[+5(7.90e-05)]_[+2(4.49e-06)]_98 chr3R:13793464-13793584 1.00e+00 120 chr2R:23022640-23022760 5.20e-01 120 chr2R:24541085-24541205 5.59e-01 120 chr3L:21594528-21594648 3.27e-02 29_[+1(2.79e-05)]_83 chr3R:10527579-10527699 9.91e-01 120 chr3L:10709252-10709372 3.73e-02 120 chr2R:16685733-16685853 3.00e-01 120 chrX:9892985-9893105 5.54e-01 120 chrX:5044562-5044682 9.35e-01 120 chr3L:12420563-12420683 9.62e-02 1_[+5(7.90e-05)]_111 chr2R:23225213-23225333 4.28e-01 120 chr3L:11536285-11536405 9.76e-01 120 chr3R:14398057-14398177 1.20e-01 120 chr2L:15275934-15276054 1.00e+00 120 chr2L:11326515-11326635 9.84e-01 120 chr2L:7175911-7176031 6.17e-01 120 chr3L:388276-388396 8.72e-01 120 chrX:2452896-2453016 4.70e-02 120 chrX:3147149-3147269 9.76e-01 120 chr2L:7619385-7619505 1.56e-01 120 chr3R:29538551-29538671 9.06e-01 120 chrX:13541322-13541442 2.45e-01 120 chr2L:7573366-7573486 6.41e-01 120 chr2L:650985-651105 4.32e-02 17_[+1(6.27e-05)]_95 chr3L:761854-761974 8.15e-01 120 chrX:15027108-15027228 3.16e-01 120 chrX:14750593-14750713 7.14e-01 120 chr2R:19187349-19187469 9.91e-01 120 chr2R:19647738-19647858 8.93e-01 120 chr3L:9742462-9742582 7.35e-01 120 chrX:5026795-5026915 5.40e-01 120 chr2R:10237722-10237842 9.97e-01 120 chrX:17550438-17550558 8.02e-01 120 chr3L:14253597-14253717 1.00e+00 120 chr2L:10791448-10791568 1.00e+00 120 chr2R:12013448-12013568 4.55e-01 120 chrX:7558772-7558892 8.67e-01 120 chr3R:25461824-25461944 1.00e+00 120 chr3R:9934976-9935096 9.99e-01 120 chr2L:19905356-19905476 9.01e-01 120 chrX:17760636-17760756 1.50e-02 19_[+1(5.34e-05)]_93 chrX:6574613-6574733 5.01e-01 120 chr3L:6220330-6220450 2.53e-01 120 chr3L:15188831-15188951 6.76e-01 120 chr3L:6359330-6359450 1.00e+00 120 chr2R:19849255-19849375 1.00e+00 120 chrX:13221404-13221524 2.75e-01 [+1(6.27e-05)]_112 chrX:20509664-20509784 9.43e-01 120 chr3R:11937584-11937704 3.15e-02 120 chr2L:382926-383046 1.00e+00 120 chr2R:10771991-10772111 1.22e-02 19_[+5(2.24e-06)]_93 chr2L:14499188-14499308 1.50e-02 120 chr3L:1031037-1031157 3.93e-01 120 chr3R:10579682-10579802 7.78e-01 120 chr2R:24338999-24339119 3.64e-01 120 chr3R:11859666-11859786 4.50e-01 120 chr3R:11947234-11947354 3.15e-01 120 chr3R:9913547-9913667 1.50e-01 120 chr3L:12706596-12706716 9.16e-01 120 chr3R:8142233-8142353 8.09e-01 120 chrX:3437634-3437754 3.35e-01 120 chrX:14897770-14897890 9.63e-01 120 chr3R:8116098-8116218 1.15e-01 120 chr3L:15544597-15544717 3.64e-02 106_[+5(7.90e-05)]_6 chrX:13278169-13278289 6.01e-01 120 chr3L:5867030-5867150 3.61e-01 18_[+1(6.27e-05)]_94 chr2R:18308293-18308413 3.48e-01 120 chr2R:10599130-10599250 3.49e-01 120 chr3R:31718309-31718429 2.85e-01 120 chr3R:4961587-4961707 8.41e-01 120 chr2R:19153380-19153500 1.00e+00 120 chr3R:15566479-15566599 7.56e-01 120 chr3L:15102029-15102149 9.49e-01 120 chrX:2788685-2788805 9.66e-01 120 chrX:739958-740078 6.14e-02 120 chrX:1320534-1320654 3.38e-01 120 chr3L:12030662-12030782 9.95e-01 120 chr2L:14247966-14248086 4.95e-01 120 chr3L:3074545-3074665 8.71e-01 120 chr3L:13263930-13264050 9.89e-01 120 chrX:18256675-18256795 1.94e-03 67_[+3(1.14e-06)]_45 chr3R:24996619-24996739 2.86e-02 120 chr2L:11328475-11328595 9.99e-01 120 chr3L:17608674-17608794 5.68e-01 120 chr3L:1087468-1087588 3.15e-01 120 chr3L:16183215-16183335 9.99e-01 120 chr3L:18193790-18193910 1.16e-01 101_[+1(8.34e-05)]_11 chr3R:29762477-29762597 3.37e-01 120 chr2R:14485459-14485579 9.98e-01 120 chrX:14073637-14073757 4.95e-02 7_[+1(6.93e-06)]_105 chr3L:18198856-18198976 8.73e-01 120 chrX:10104603-10104723 7.01e-01 120 chr3R:27171237-27171357 9.77e-01 120 chr3L:2838312-2838432 8.87e-01 120 chr3L:11365846-11365966 7.24e-07 23_[+4(4.36e-05)]_5_[+2(2.26e-06)]_\ 76 chr3L:14622543-14622663 7.02e-01 120 chrX:8601294-8601414 7.47e-01 120 chr2L:15459060-15459180 9.06e-01 120 chr3R:11888363-11888483 2.81e-01 120 chr2R:6969524-6969644 8.89e-01 120 chr3L:14083415-14083535 7.49e-01 120 chr2R:19615981-19616101 4.54e-01 120 chr2R:12741717-12741837 3.29e-02 105_[+1(5.34e-05)]_7 chr2R:14975262-14975382 3.94e-01 120 chr3L:20552048-20552168 5.20e-01 120 chr3L:6871426-6871546 5.29e-01 120 chr3R:31059815-31059935 7.49e-02 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chrX:16761636-16761756 1.85e-06 40_[+4(1.14e-06)]_2_[+2(2.26e-06)]_\ 62 chr2R:16156427-16156547 7.00e-01 120 chr2L:9828997-9829117 9.93e-01 120 chr3R:23888794-23888914 5.58e-01 120 chr2L:7376318-7376438 9.59e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************