******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/crc.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:2652560-2652680 1.0000 120 chr3R:26859335-26859455 1.0000 120 chr3L:4445983-4446103 1.0000 120 chr2L:1650218-1650338 1.0000 120 chr2L:9911896-9912016 1.0000 120 chr3L:1925876-1925996 1.0000 120 chrX:8417165-8417285 1.0000 120 chr2R:16143078-16143198 1.0000 120 chrX:7703108-7703228 1.0000 120 chr3L:19190906-19191026 1.0000 120 chr3L:721178-721298 1.0000 120 chr2R:14488463-14488583 1.0000 120 chrX:12014801-12014921 1.0000 120 chr2L:7155053-7155173 1.0000 120 chr2R:14934085-14934205 1.0000 120 chr3L:1167074-1167194 1.0000 120 chr3L:4521873-4521993 1.0000 120 chr3L:18837738-18837858 1.0000 120 chrX:7488392-7488512 1.0000 120 chrX:8677544-8677664 1.0000 120 chr2L:8554448-8554568 1.0000 120 chr3L:12526610-12526730 1.0000 120 chr3L:20730991-20731111 1.0000 120 chr2R:22640263-22640383 1.0000 120 chr3L:2734951-2735071 1.0000 120 chr2L:18707972-18708092 1.0000 120 chrX:16650557-16650677 1.0000 120 chr3L:9505826-9505946 1.0000 120 chrX:13630428-13630548 1.0000 120 chr2R:16845542-16845662 1.0000 120 chr3R:15292214-15292334 1.0000 120 chr2R:18846701-18846821 1.0000 120 chr2R:11633043-11633163 1.0000 120 chr3L:20494422-20494542 1.0000 120 chr2L:10677454-10677574 1.0000 120 chr3L:3760754-3760874 1.0000 120 chr2L:16531013-16531133 1.0000 120 chr2L:20807746-20807866 1.0000 120 chr2L:2873469-2873589 1.0000 120 chrX:6796118-6796238 1.0000 120 chr2R:14219332-14219452 1.0000 120 chr2R:13999322-13999442 1.0000 120 chr3L:12350469-12350589 1.0000 120 chr2L:16251978-16252098 1.0000 120 chr3R:26978299-26978419 1.0000 120 chr3L:8338903-8339023 1.0000 120 chr3L:20276759-20276879 1.0000 120 chr2R:22616875-22616995 1.0000 120 chr3R:15293674-15293794 1.0000 120 chr3L:7861136-7861256 1.0000 120 chr2R:11792777-11792897 1.0000 120 chr2R:13028968-13029088 1.0000 120 chrX:8536805-8536925 1.0000 120 chr3R:9055228-9055348 1.0000 120 chr3L:12803797-12803917 1.0000 120 chr2L:10237917-10238037 1.0000 120 chr3L:16002187-16002307 1.0000 120 chr3R:23941775-23941895 1.0000 120 chr2R:14576123-14576243 1.0000 120 chr2R:21851678-21851798 1.0000 120 chr2L:20083597-20083717 1.0000 120 chrX:12221687-12221807 1.0000 120 chrX:3714150-3714270 1.0000 120 chrX:4614498-4614618 1.0000 120 chrX:5086181-5086301 1.0000 120 chrX:13633305-13633425 1.0000 120 chrX:11359071-11359191 1.0000 120 chr3L:16840617-16840737 1.0000 120 chrX:19164844-19164964 1.0000 120 chr3R:13441808-13441928 1.0000 120 chr2R:7077041-7077161 1.0000 120 chr2L:9494851-9494971 1.0000 120 chr2R:22318027-22318147 1.0000 120 chrX:17582814-17582934 1.0000 120 chr2L:9775394-9775514 1.0000 120 chr3R:16655761-16655881 1.0000 120 chr3L:15591244-15591364 1.0000 120 chr3R:18215441-18215561 1.0000 120 chr2L:1428461-1428581 1.0000 120 chr3L:14055273-14055393 1.0000 120 chr3R:11993342-11993462 1.0000 120 chrX:6615590-6615710 1.0000 120 chr2R:23615173-23615293 1.0000 120 chr3L:11258596-11258716 1.0000 120 chr2L:18625595-18625715 1.0000 120 chr2L:15254322-15254442 1.0000 120 chr3L:3320128-3320248 1.0000 120 chr3R:28327291-28327411 1.0000 120 chrX:13332806-13332926 1.0000 120 chr3R:31608555-31608675 1.0000 120 chr2L:19121027-19121147 1.0000 120 chrX:3950221-3950341 1.0000 120 chr2R:17161046-17161166 1.0000 120 chr3R:15963995-15964115 1.0000 120 chr2R:24571645-24571765 1.0000 120 chr3L:10362566-10362686 1.0000 120 chrX:12466729-12466849 1.0000 120 chr2R:22062547-22062667 1.0000 120 chr3R:26172188-26172308 1.0000 120 chr2L:9448826-9448946 1.0000 120 chr3R:29068936-29069056 1.0000 120 chrX:8720378-8720498 1.0000 120 chr2R:13008269-13008389 1.0000 120 chr3R:16704417-16704537 1.0000 120 chr3R:31793675-31793795 1.0000 120 chr2R:18691521-18691641 1.0000 120 chr3R:8563858-8563978 1.0000 120 chr2L:10143434-10143554 1.0000 120 chr2L:16317959-16318079 1.0000 120 chr2R:21091914-21092034 1.0000 120 chrX:13788953-13789073 1.0000 120 chr3R:21176799-21176919 1.0000 120 chrX:6037388-6037508 1.0000 120 chr2R:21711999-21712119 1.0000 120 chrX:8141507-8141627 1.0000 120 chrX:10366027-10366147 1.0000 120 chr3L:9691238-9691358 1.0000 120 chr2R:17461176-17461296 1.0000 120 chr3L:9854968-9855088 1.0000 120 chr2L:8361501-8361621 1.0000 120 chrX:4322752-4322872 1.0000 120 chr3R:15644929-15645049 1.0000 120 chr3L:8835084-8835204 1.0000 120 chr2L:6649236-6649356 1.0000 120 chr2R:21503270-21503390 1.0000 120 chrX:17330418-17330538 1.0000 120 chr3R:10677577-10677697 1.0000 120 chr2L:3787137-3787257 1.0000 120 chrX:9137307-9137427 1.0000 120 chr3L:4413225-4413345 1.0000 120 chr2L:858237-858357 1.0000 120 chr2L:21260959-21261079 1.0000 120 chr2L:13882044-13882164 1.0000 120 chr2R:7636741-7636861 1.0000 120 chr3R:10168778-10168898 1.0000 120 chr3L:3326119-3326239 1.0000 120 chr3L:11789973-11790093 1.0000 120 chr3R:5861444-5861564 1.0000 120 chrX:3761840-3761960 1.0000 120 chr3R:21856693-21856813 1.0000 120 chrX:14839774-14839894 1.0000 120 chrX:11548782-11548902 1.0000 120 chr2L:12351040-12351160 1.0000 120 chr2R:19128031-19128151 1.0000 120 chr3L:8446162-8446282 1.0000 120 chr3R:22339633-22339753 1.0000 120 chr3L:1216597-1216717 1.0000 120 chrX:6375813-6375933 1.0000 120 chrX:13755293-13755413 1.0000 120 chr3L:20944314-20944434 1.0000 120 chr3R:15792647-15792767 1.0000 120 chr2L:16818381-16818501 1.0000 120 chrX:5639240-5639360 1.0000 120 chr3R:26937611-26937731 1.0000 120 chr3R:19180658-19180778 1.0000 120 chr3R:10696563-10696683 1.0000 120 chr3L:9899156-9899276 1.0000 120 chr3R:21850224-21850344 1.0000 120 chr3L:9847579-9847699 1.0000 120 chr2L:5980908-5981028 1.0000 120 chr3R:8984641-8984761 1.0000 120 chr3L:16571563-16571683 1.0000 120 chrX:19505678-19505798 1.0000 120 chrX:9193760-9193880 1.0000 120 chr2R:13482196-13482316 1.0000 120 chrX:7015067-7015187 1.0000 120 chr2R:9544881-9545001 1.0000 120 chr3R:23028677-23028797 1.0000 120 chr3L:14190076-14190196 1.0000 120 chr2L:8738318-8738438 1.0000 120 chr2L:13073981-13074101 1.0000 120 chr3L:5857035-5857155 1.0000 120 chr2L:21370998-21371118 1.0000 120 chr2L:522856-522976 1.0000 120 chr3L:5926049-5926169 1.0000 120 chrX:6037587-6037707 1.0000 120 chr2L:10565852-10565972 1.0000 120 chr2L:7033447-7033567 1.0000 120 chr2L:16703828-16703948 1.0000 120 chr2L:15629895-15630015 1.0000 120 chr3R:8033009-8033129 1.0000 120 chr3L:18997307-18997427 1.0000 120 chr2R:13926306-13926426 1.0000 120 chr2R:12605701-12605821 1.0000 120 chr2R:10303761-10303881 1.0000 120 chr3R:9220155-9220275 1.0000 120 chr2L:8572970-8573090 1.0000 120 chr2L:3566647-3566767 1.0000 120 chr3R:25050392-25050512 1.0000 120 chrX:6695064-6695184 1.0000 120 chrX:15844277-15844397 1.0000 120 chr2R:15114498-15114618 1.0000 120 chr3L:8689819-8689939 1.0000 120 chr3L:5789892-5790012 1.0000 120 chr2L:17470752-17470872 1.0000 120 chr2L:5798156-5798276 1.0000 120 chr3L:20395364-20395484 1.0000 120 chrX:16782337-16782457 1.0000 120 chr3R:10140483-10140603 1.0000 120 chr3R:4319515-4319635 1.0000 120 chr2L:12721122-12721242 1.0000 120 chr2R:17748573-17748693 1.0000 120 chr3L:554729-554849 1.0000 120 chr3L:1335573-1335693 1.0000 120 chr3R:9370578-9370698 1.0000 120 chr3R:26099314-26099434 1.0000 120 chr3R:21151501-21151621 1.0000 120 chr2R:8615301-8615421 1.0000 120 chr3L:18621239-18621359 1.0000 120 chr3R:16006057-16006177 1.0000 120 chr3R:8013244-8013364 1.0000 120 chr3L:2152089-2152209 1.0000 120 chr3L:9128194-9128314 1.0000 120 chr3R:25004859-25004979 1.0000 120 chr2R:23574965-23575085 1.0000 120 chr3L:5987766-5987886 1.0000 120 chr2R:7052424-7052544 1.0000 120 chr2L:8692605-8692725 1.0000 120 chr3R:7977720-7977840 1.0000 120 chrX:6614384-6614504 1.0000 120 chr3L:18784683-18784803 1.0000 120 chr3L:17912641-17912761 1.0000 120 chr2R:9440339-9440459 1.0000 120 chr2R:22548227-22548347 1.0000 120 chr3L:12408877-12408997 1.0000 120 chr3R:5759011-5759131 1.0000 120 chrX:13391300-13391420 1.0000 120 chr3L:17659287-17659407 1.0000 120 chr3R:15472747-15472867 1.0000 120 chr2R:6630727-6630847 1.0000 120 chr3L:7151990-7152110 1.0000 120 chr3R:29458758-29458878 1.0000 120 chr2R:9006885-9007005 1.0000 120 chr3L:1350577-1350697 1.0000 120 chr3R:26536826-26536946 1.0000 120 chr3L:12139354-12139474 1.0000 120 chr2R:16571764-16571884 1.0000 120 chr2L:6968354-6968474 1.0000 120 chrX:2149706-2149826 1.0000 120 chr2R:16608428-16608548 1.0000 120 chr3L:19552280-19552400 1.0000 120 chr3L:5881757-5881877 1.0000 120 chrX:1272981-1273101 1.0000 120 chrX:11454515-11454635 1.0000 120 chr3R:31169127-31169247 1.0000 120 chr2L:1628251-1628371 1.0000 120 chrX:8892704-8892824 1.0000 120 chrX:956005-956125 1.0000 120 chrX:15599839-15599959 1.0000 120 chr3L:19337844-19337964 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_crc/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/crc.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.317 C 0.184 G 0.177 T 0.322 Background letter frequencies (from file dataset with add-one prior applied): A 0.317 C 0.184 G 0.178 T 0.322 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAGKGCWS MEME-1 width = 8 sites = 21 llr = 198 E-value = 1.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGKGCWS MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a::::4: pos.-specific C a:2::a:7 probability G ::84a:23 matrix T :::6::4: bits 2.5 * ** 2.2 * ** 2.0 * ** 1.7 *** ** Relative 1.5 *** ** * Entropy 1.2 *** ** * (13.6 bits) 1.0 ****** * 0.7 ****** * 0.5 ****** * 0.2 ******** 0.0 -------- Multilevel CAGTGCAC consensus CG TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGCWS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:14055273-14055393 19 3.53e-06 ACTCCCCAAG CAGGGCAC AGTGGAATGG chr3L:9854968-9855088 107 7.12e-06 CCTGTTGCTT CAGGGCTC GACTGA chr3L:12139354-12139474 69 1.55e-05 GCTGTATGTA CAGTGCAC CCTCCCTAGT chr3L:7151990-7152110 71 1.55e-05 GATTTTCCCT CAGTGCAC GGAGCAGTTT chr3L:1335573-1335693 15 1.55e-05 CAAACTAATA CAGTGCAC TTTCGCAAAG chr3R:15644929-15645049 62 1.55e-05 CTATTTCTCT CAGTGCAC AGATGGACAG chr2L:8361501-8361621 112 1.55e-05 GCATGTTACA CAGTGCAC A chr2L:7155053-7155173 107 1.55e-05 TTATTTGGCT CAGTGCAC TTGAAC chr3L:9128194-9128314 19 2.20e-05 TACGTATTTG CAGTGCTC TCTACCCTTG chr3L:18997307-18997427 100 3.24e-05 CATAAAAATT CAGGGCTG TCGCGTCCCG chr2L:7033447-7033567 76 3.24e-05 AAATATTTGG CAGGGCTG CAATAGCAAC chr3L:9899156-9899276 35 3.24e-05 AACTGTTGAC CAGGGCTG GAAACGGCAA chr3R:18215441-18215561 19 3.24e-05 AACGTAAGAC CAGGGCTG CAACTACGAA chr3R:23941775-23941895 98 4.68e-05 ACACACTGTG CAGTGCTG TGCTCTCATT chr3L:20395364-20395484 41 5.39e-05 AATACATTTC CAGTGCGG TTACATACAG chr2L:5980908-5981028 31 5.39e-05 CCAGGAAACC CACGGCAC TCACACTGTT chr3R:21850224-21850344 27 5.39e-05 GTAATTAGAA CAGTGCGG ACTCGGCCAA chr3L:15591244-15591364 13 5.39e-05 gttgttgttC CACGGCAC TTGTTGACAC chr3L:18621239-18621359 14 6.63e-05 TCACGTGACT CACGGCGC ACCTCTGATT chrX:8536805-8536925 70 7.30e-05 AGCATGGTCA CACTGCTC GTGTTCTGAA chr3R:29458758-29458878 3 7.67e-05 CA CACTGCGC GGAATATTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGCWS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14055273-14055393 3.5e-06 18_[+1]_94 chr3L:9854968-9855088 7.1e-06 106_[+1]_6 chr3L:12139354-12139474 1.5e-05 68_[+1]_44 chr3L:7151990-7152110 1.5e-05 70_[+1]_42 chr3L:1335573-1335693 1.5e-05 14_[+1]_98 chr3R:15644929-15645049 1.5e-05 61_[+1]_51 chr2L:8361501-8361621 1.5e-05 111_[+1]_1 chr2L:7155053-7155173 1.5e-05 106_[+1]_6 chr3L:9128194-9128314 2.2e-05 18_[+1]_94 chr3L:18997307-18997427 3.2e-05 99_[+1]_13 chr2L:7033447-7033567 3.2e-05 75_[+1]_37 chr3L:9899156-9899276 3.2e-05 34_[+1]_78 chr3R:18215441-18215561 3.2e-05 18_[+1]_94 chr3R:23941775-23941895 4.7e-05 97_[+1]_15 chr3L:20395364-20395484 5.4e-05 40_[+1]_72 chr2L:5980908-5981028 5.4e-05 30_[+1]_82 chr3R:21850224-21850344 5.4e-05 26_[+1]_86 chr3L:15591244-15591364 5.4e-05 12_[+1]_100 chr3L:18621239-18621359 6.6e-05 13_[+1]_99 chrX:8536805-8536925 7.3e-05 69_[+1]_43 chr3R:29458758-29458878 7.7e-05 2_[+1]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGCWS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGKGCWS width=8 seqs=21 chr3L:14055273-14055393 ( 19) CAGGGCAC 1 chr3L:9854968-9855088 ( 107) CAGGGCTC 1 chr3L:12139354-12139474 ( 69) CAGTGCAC 1 chr3L:7151990-7152110 ( 71) CAGTGCAC 1 chr3L:1335573-1335693 ( 15) CAGTGCAC 1 chr3R:15644929-15645049 ( 62) CAGTGCAC 1 chr2L:8361501-8361621 ( 112) CAGTGCAC 1 chr2L:7155053-7155173 ( 107) CAGTGCAC 1 chr3L:9128194-9128314 ( 19) CAGTGCTC 1 chr3L:18997307-18997427 ( 100) CAGGGCTG 1 chr2L:7033447-7033567 ( 76) CAGGGCTG 1 chr3L:9899156-9899276 ( 35) CAGGGCTG 1 chr3R:18215441-18215561 ( 19) CAGGGCTG 1 chr3R:23941775-23941895 ( 98) CAGTGCTG 1 chr3L:20395364-20395484 ( 41) CAGTGCGG 1 chr2L:5980908-5981028 ( 31) CACGGCAC 1 chr3R:21850224-21850344 ( 27) CAGTGCGG 1 chr3L:15591244-15591364 ( 13) CACGGCAC 1 chr3L:18621239-18621359 ( 14) CACGGCGC 1 chrX:8536805-8536925 ( 70) CACTGCTC 1 chr3R:29458758-29458878 ( 3) CACTGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGCWS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 1.6e+002 -1104 244 -1104 -1104 166 -1104 -1104 -1104 -1104 38 210 -1104 -1104 -1104 127 83 -1104 -1104 249 -1104 -1104 244 -1104 -1104 43 -1104 10 24 -1104 186 91 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGCWS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.6e+002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.238095 0.761905 0.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.000000 0.190476 0.380952 0.000000 0.666667 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGCWS MEME-1 regular expression -------------------------------------------------------------------------------- CA[GC][TG]GC[AT][CG] -------------------------------------------------------------------------------- Time 7.52 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGGGGA MEME-2 width = 8 sites = 2 llr = 26 E-value = 7.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGGGGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C :a:::::: probability G a:aaaaa: matrix T :::::::: bits 2.5 ******* 2.2 ******* 2.0 ******* 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (19.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGGGGGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:10143434-10143554 30 1.86e-06 GGAACTTCCT GCGGGGGA ACAGGAAATA chr2R:22318027-22318147 1 1.86e-06 . GCGGGGGA GGGGGTTTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10143434-10143554 1.9e-06 29_[+2]_83 chr2R:22318027-22318147 1.9e-06 [+2]_112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGGGGA width=8 seqs=2 chr2L:10143434-10143554 ( 30) GCGGGGGA 1 chr2R:22318027-22318147 ( 1) GCGGGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 7.4e+003 -765 -765 249 -765 -765 244 -765 -765 -765 -765 249 -765 -765 -765 249 -765 -765 -765 249 -765 -765 -765 249 -765 -765 -765 249 -765 165 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 7.4e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGGA MEME-2 regular expression -------------------------------------------------------------------------------- GCGGGGGA -------------------------------------------------------------------------------- Time 13.74 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGCAGG MEME-3 width = 8 sites = 2 llr = 26 E-value = 7.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGCAGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C ::::a::: probability G aaaa::aa matrix T :::::::: bits 2.5 ***** ** 2.2 ***** ** 2.0 ***** ** 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (19.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGCAGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7151990-7152110 101 1.86e-06 ATTGGCAGAA GGGGCAGG AGTCGTCGCA chr2R:6630727-6630847 6 1.86e-06 ATAAT GGGGCAGG TAAACACCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7151990-7152110 1.9e-06 100_[+3]_12 chr2R:6630727-6630847 1.9e-06 5_[+3]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGCAGG width=8 seqs=2 chr3L:7151990-7152110 ( 101) GGGGCAGG 1 chr2R:6630727-6630847 ( 6) GGGGCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 7.4e+003 -765 -765 249 -765 -765 -765 249 -765 -765 -765 249 -765 -765 -765 249 -765 -765 244 -765 -765 165 -765 -765 -765 -765 -765 249 -765 -765 -765 249 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 7.4e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAGG MEME-3 regular expression -------------------------------------------------------------------------------- GGGGCAGG -------------------------------------------------------------------------------- Time 20.02 secs. ******************************************************************************** ******************************************************************************** MOTIF CGMCGGGC MEME-4 width = 8 sites = 3 llr = 38 E-value = 2.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGMCGGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::7::::: pos.-specific C a:3a:::a probability G :a::aaa: matrix T :::::::: bits 2.5 ** ***** 2.2 ** ***** 2.0 ** ***** 1.7 ** ***** Relative 1.5 ** ***** Entropy 1.2 ** ***** (18.3 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGACGGGC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGMCGGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:8361501-8361621 2 1.98e-06 A CGACGGGC CCAGGGAAGC chr2L:16317959-16318079 18 1.98e-06 TGTTCAAATA CGACGGGC TTTGcaaata chr3L:8835084-8835204 32 3.13e-06 TGTTTGCCTT CGCCGGGC AAACACTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGMCGGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8361501-8361621 2e-06 1_[+4]_111 chr2L:16317959-16318079 2e-06 17_[+4]_95 chr3L:8835084-8835204 3.1e-06 31_[+4]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGMCGGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGMCGGGC width=8 seqs=3 chr2L:8361501-8361621 ( 2) CGACGGGC 1 chr2L:16317959-16318079 ( 18) CGACGGGC 1 chr3L:8835084-8835204 ( 32) CGCCGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGMCGGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 2.9e+004 -823 244 -823 -823 -823 -823 249 -823 107 86 -823 -823 -823 244 -823 -823 -823 -823 249 -823 -823 -823 249 -823 -823 -823 249 -823 -823 244 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGMCGGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.9e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGMCGGGC MEME-4 regular expression -------------------------------------------------------------------------------- CG[AC]CGGGC -------------------------------------------------------------------------------- Time 26.24 secs. ******************************************************************************** ******************************************************************************** MOTIF GATGGGCG MEME-5 width = 8 sites = 2 llr = 25 E-value = 3.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GATGGGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C ::::::a: probability G a::aaa:a matrix T ::a::::: bits 2.5 * ***** 2.2 * ***** 2.0 * ***** 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (18.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GATGGGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5759011-5759131 28 3.36e-06 ATTTTGTAGA GATGGGCG TTCTATTCTA chr3R:31793675-31793795 56 3.36e-06 TCGCAATTGA GATGGGCG ACTCACGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5759011-5759131 3.4e-06 27_[+5]_85 chr3R:31793675-31793795 3.4e-06 55_[+5]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GATGGGCG width=8 seqs=2 chr3R:5759011-5759131 ( 28) GATGGGCG 1 chr3R:31793675-31793795 ( 56) GATGGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 3.4e+004 -765 -765 249 -765 165 -765 -765 -765 -765 -765 -765 163 -765 -765 249 -765 -765 -765 249 -765 -765 -765 249 -765 -765 244 -765 -765 -765 -765 249 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.4e+004 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGGCG MEME-5 regular expression -------------------------------------------------------------------------------- GATGGGCG -------------------------------------------------------------------------------- Time 32.45 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2652560-2652680 1.57e-02 120 chr3R:26859335-26859455 9.98e-01 120 chr3L:4445983-4446103 1.00e+00 120 chr2L:1650218-1650338 3.84e-01 120 chr2L:9911896-9912016 2.96e-01 120 chr3L:1925876-1925996 9.79e-01 120 chrX:8417165-8417285 9.74e-01 120 chr2R:16143078-16143198 3.68e-01 120 chrX:7703108-7703228 1.00e+00 120 chr3L:19190906-19191026 9.24e-01 120 chr3L:721178-721298 7.55e-01 120 chr2R:14488463-14488583 9.71e-01 120 chrX:12014801-12014921 8.98e-01 120 chr2L:7155053-7155173 1.47e-01 106_[+1(1.55e-05)]_6 chr2R:14934085-14934205 2.28e-01 120 chr3L:1167074-1167194 9.99e-01 120 chr3L:4521873-4521993 5.73e-01 120 chr3L:18837738-18837858 6.61e-02 120 chrX:7488392-7488512 9.13e-01 120 chrX:8677544-8677664 9.99e-01 120 chr2L:8554448-8554568 9.95e-01 120 chr3L:12526610-12526730 1.87e-01 120 chr3L:20730991-20731111 6.61e-01 120 chr2R:22640263-22640383 7.44e-01 120 chr3L:2734951-2735071 3.61e-01 120 chr2L:18707972-18708092 9.85e-01 120 chrX:16650557-16650677 9.95e-01 120 chr3L:9505826-9505946 8.42e-02 120 chrX:13630428-13630548 1.00e+00 120 chr2R:16845542-16845662 3.29e-01 120 chr3R:15292214-15292334 6.69e-01 120 chr2R:18846701-18846821 9.65e-01 120 chr2R:11633043-11633163 2.62e-02 89_[+3(6.56e-05)]_23 chr3L:20494422-20494542 9.10e-01 120 chr2L:10677454-10677574 9.97e-01 120 chr3L:3760754-3760874 9.99e-01 120 chr2L:16531013-16531133 7.96e-01 120 chr2L:20807746-20807866 7.32e-01 120 chr2L:2873469-2873589 9.72e-01 120 chrX:6796118-6796238 2.27e-01 120 chr2R:14219332-14219452 8.33e-01 120 chr2R:13999322-13999442 9.99e-01 120 chr3L:12350469-12350589 3.53e-02 120 chr2L:16251978-16252098 3.79e-01 120 chr3R:26978299-26978419 1.99e-01 120 chr3L:8338903-8339023 1.04e-01 120 chr3L:20276759-20276879 9.97e-01 120 chr2R:22616875-22616995 2.28e-01 120 chr3R:15293674-15293794 9.83e-01 120 chr3L:7861136-7861256 9.78e-01 120 chr2R:11792777-11792897 6.10e-01 120 chr2R:13028968-13029088 4.00e-01 120 chrX:8536805-8536925 2.92e-01 69_[+1(7.30e-05)]_43 chr3R:9055228-9055348 9.65e-02 120 chr3L:12803797-12803917 9.99e-01 120 chr2L:10237917-10238037 9.04e-01 120 chr3L:16002187-16002307 1.50e-01 120 chr3R:23941775-23941895 3.10e-02 97_[+1(4.68e-05)]_15 chr2R:14576123-14576243 6.81e-01 120 chr2R:21851678-21851798 5.85e-01 120 chr2L:20083597-20083717 1.00e+00 120 chrX:12221687-12221807 1.79e-01 120 chrX:3714150-3714270 1.00e+00 120 chrX:4614498-4614618 8.10e-01 120 chrX:5086181-5086301 9.99e-01 120 chrX:13633305-13633425 8.87e-01 120 chrX:11359071-11359191 8.26e-01 120 chr3L:16840617-16840737 1.00e+00 120 chrX:19164844-19164964 1.26e-01 120 chr3R:13441808-13441928 1.96e-02 120 chr2R:7077041-7077161 7.56e-02 120 chr2L:9494851-9494971 8.08e-01 120 chr2R:22318027-22318147 3.88e-05 [+2(1.86e-06)]_112 chrX:17582814-17582934 1.00e+00 120 chr2L:9775394-9775514 8.25e-01 120 chr3R:16655761-16655881 9.98e-01 120 chr3L:15591244-15591364 1.16e-02 12_[+1(5.39e-05)]_100 chr3R:18215441-18215561 1.41e-01 18_[+1(3.24e-05)]_94 chr2L:1428461-1428581 1.00e+00 120 chr3L:14055273-14055393 1.94e-03 18_[+1(3.53e-06)]_94 chr3R:11993342-11993462 5.69e-01 120 chrX:6615590-6615710 9.96e-01 120 chr2R:23615173-23615293 9.56e-01 120 chr3L:11258596-11258716 6.36e-01 120 chr2L:18625595-18625715 7.72e-01 120 chr2L:15254322-15254442 4.70e-01 49_[+1(9.22e-05)]_63 chr3L:3320128-3320248 7.18e-01 120 chr3R:28327291-28327411 8.75e-01 120 chrX:13332806-13332926 1.49e-02 120 chr3R:31608555-31608675 2.39e-01 120 chr2L:19121027-19121147 8.97e-01 120 chrX:3950221-3950341 9.03e-02 120 chr2R:17161046-17161166 2.89e-01 120 chr3R:15963995-15964115 2.71e-01 120 chr2R:24571645-24571765 3.51e-02 120 chr3L:10362566-10362686 9.98e-01 120 chrX:12466729-12466849 8.52e-01 120 chr2R:22062547-22062667 2.79e-01 120 chr3R:26172188-26172308 9.10e-01 120 chr2L:9448826-9448946 9.73e-01 120 chr3R:29068936-29069056 8.13e-01 120 chrX:8720378-8720498 5.03e-01 120 chr2R:13008269-13008389 9.07e-01 120 chr3R:16704417-16704537 9.99e-01 120 chr3R:31793675-31793795 4.28e-03 55_[+5(3.36e-06)]_57 chr2R:18691521-18691641 1.00e+00 120 chr3R:8563858-8563978 9.69e-01 120 chr2L:10143434-10143554 5.00e-04 29_[+2(1.86e-06)]_83 chr2L:16317959-16318079 1.03e-02 17_[+4(1.98e-06)]_95 chr2R:21091914-21092034 9.99e-01 120 chrX:13788953-13789073 2.96e-02 4_[+4(6.93e-05)]_108 chr3R:21176799-21176919 2.38e-01 120 chrX:6037388-6037508 1.78e-04 25_[+5(1.77e-05)]_87 chr2R:21711999-21712119 2.60e-01 120 chrX:8141507-8141627 3.55e-01 120 chrX:10366027-10366147 2.29e-01 120 chr3L:9691238-9691358 1.00e+00 120 chr2R:17461176-17461296 7.72e-01 120 chr3L:9854968-9855088 5.12e-03 106_[+1(7.12e-06)]_6 chr2L:8361501-8361621 6.68e-06 1_[+4(1.98e-06)]_102_[+1(1.55e-05)]_\ 1 chrX:4322752-4322872 5.32e-02 120 chr3R:15644929-15645049 4.57e-04 61_[+1(1.55e-05)]_51 chr3L:8835084-8835204 1.25e-03 31_[+4(3.13e-06)]_81 chr2L:6649236-6649356 9.97e-01 120 chr2R:21503270-21503390 4.96e-01 120 chrX:17330418-17330538 9.96e-01 120 chr3R:10677577-10677697 7.71e-01 120 chr2L:3787137-3787257 1.12e-01 120 chrX:9137307-9137427 8.37e-01 120 chr3L:4413225-4413345 1.96e-01 120 chr2L:858237-858357 6.38e-01 120 chr2L:21260959-21261079 7.17e-01 120 chr2L:13882044-13882164 8.74e-01 120 chr2R:7636741-7636861 7.54e-01 120 chr3R:10168778-10168898 9.99e-01 120 chr3L:3326119-3326239 6.51e-01 120 chr3L:11789973-11790093 8.89e-01 120 chr3R:5861444-5861564 6.70e-01 120 chrX:3761840-3761960 1.30e-01 120 chr3R:21856693-21856813 9.62e-01 120 chrX:14839774-14839894 4.09e-01 120 chrX:11548782-11548902 9.82e-01 120 chr2L:12351040-12351160 9.02e-01 120 chr2R:19128031-19128151 2.90e-03 120 chr3L:8446162-8446282 8.03e-01 120 chr3R:22339633-22339753 9.92e-01 120 chr3L:1216597-1216717 9.75e-01 120 chrX:6375813-6375933 8.47e-01 120 chrX:13755293-13755413 5.28e-01 120 chr3L:20944314-20944434 4.28e-02 120 chr3R:15792647-15792767 9.88e-01 120 chr2L:16818381-16818501 6.96e-01 120 chrX:5639240-5639360 5.16e-01 120 chr3R:26937611-26937731 3.99e-01 120 chr3R:19180658-19180778 3.05e-01 120 chr3R:10696563-10696683 8.69e-01 120 chr3L:9899156-9899276 8.66e-03 34_[+1(3.24e-05)]_78 chr3R:21850224-21850344 3.44e-01 26_[+1(5.39e-05)]_86 chr3L:9847579-9847699 9.97e-01 120 chr2L:5980908-5981028 3.61e-02 30_[+1(5.39e-05)]_82 chr3R:8984641-8984761 7.58e-01 120 chr3L:16571563-16571683 8.61e-01 120 chrX:19505678-19505798 6.76e-01 120 chrX:9193760-9193880 8.13e-01 120 chr2R:13482196-13482316 1.00e+00 120 chrX:7015067-7015187 9.99e-01 120 chr2R:9544881-9545001 2.33e-01 120 chr3R:23028677-23028797 9.67e-01 120 chr3L:14190076-14190196 9.75e-01 120 chr2L:8738318-8738438 1.00e+00 120 chr2L:13073981-13074101 8.28e-01 120 chr3L:5857035-5857155 1.00e+00 120 chr2L:21370998-21371118 9.19e-01 120 chr2L:522856-522976 9.86e-01 120 chr3L:5926049-5926169 8.11e-01 120 chrX:6037587-6037707 7.65e-02 120 chr2L:10565852-10565972 9.70e-01 120 chr2L:7033447-7033567 5.16e-03 75_[+1(3.24e-05)]_37 chr2L:16703828-16703948 2.62e-01 120 chr2L:15629895-15630015 2.73e-01 120 chr3R:8033009-8033129 3.73e-01 46_[+3(6.56e-05)]_66 chr3L:18997307-18997427 1.20e-01 99_[+1(3.24e-05)]_13 chr2R:13926306-13926426 9.59e-01 120 chr2R:12605701-12605821 1.00e+00 120 chr2R:10303761-10303881 9.22e-01 120 chr3R:9220155-9220275 3.90e-01 120 chr2L:8572970-8573090 1.45e-01 120 chr2L:3566647-3566767 5.67e-01 120 chr3R:25050392-25050512 2.15e-01 120 chrX:6695064-6695184 6.24e-01 120 chrX:15844277-15844397 4.97e-01 120 chr2R:15114498-15114618 9.34e-01 120 chr3L:8689819-8689939 8.22e-01 120 chr3L:5789892-5790012 8.98e-01 120 chr2L:17470752-17470872 9.99e-01 120 chr2L:5798156-5798276 7.44e-01 120 chr3L:20395364-20395484 2.99e-02 40_[+1(5.39e-05)]_72 chrX:16782337-16782457 8.89e-01 120 chr3R:10140483-10140603 8.71e-01 120 chr3R:4319515-4319635 2.83e-01 120 chr2L:12721122-12721242 1.95e-01 120 chr2R:17748573-17748693 8.11e-01 120 chr3L:554729-554849 8.94e-01 120 chr3L:1335573-1335693 1.09e-01 14_[+1(1.55e-05)]_98 chr3R:9370578-9370698 9.81e-01 120 chr3R:26099314-26099434 8.24e-01 120 chr3R:21151501-21151621 7.25e-01 120 chr2R:8615301-8615421 1.00e+00 120 chr3L:18621239-18621359 1.57e-01 13_[+1(6.63e-05)]_99 chr3R:16006057-16006177 8.03e-01 120 chr3R:8013244-8013364 5.26e-01 120 chr3L:2152089-2152209 9.97e-01 120 chr3L:9128194-9128314 2.14e-01 18_[+1(2.20e-05)]_94 chr3R:25004859-25004979 6.60e-01 120 chr2R:23574965-23575085 8.29e-01 120 chr3L:5987766-5987886 5.41e-01 120 chr2R:7052424-7052544 9.92e-01 120 chr2L:8692605-8692725 3.40e-01 120 chr3R:7977720-7977840 6.77e-01 120 chrX:6614384-6614504 9.03e-01 120 chr3L:18784683-18784803 7.79e-02 120 chr3L:17912641-17912761 9.76e-01 120 chr2R:9440339-9440459 9.97e-01 120 chr2R:22548227-22548347 9.18e-01 120 chr3L:12408877-12408997 2.12e-01 120 chr3R:5759011-5759131 1.76e-02 27_[+5(3.36e-06)]_85 chrX:13391300-13391420 2.49e-01 120 chr3L:17659287-17659407 8.02e-01 120 chr3R:15472747-15472867 9.50e-01 120 chr2R:6630727-6630847 2.30e-03 5_[+3(1.86e-06)]_107 chr3L:7151990-7152110 8.16e-05 70_[+1(1.55e-05)]_22_[+3(1.86e-06)]_\ 12 chr3R:29458758-29458878 8.32e-02 2_[+1(7.67e-05)]_110 chr2R:9006885-9007005 9.16e-01 120 chr3L:1350577-1350697 3.69e-01 120 chr3R:26536826-26536946 6.50e-01 120 chr3L:12139354-12139474 1.81e-01 68_[+1(1.55e-05)]_44 chr2R:16571764-16571884 9.49e-01 120 chr2L:6968354-6968474 8.26e-01 120 chrX:2149706-2149826 6.93e-02 120 chr2R:16608428-16608548 8.52e-01 120 chr3L:19552280-19552400 5.94e-02 28_[+3(6.56e-05)]_84 chr3L:5881757-5881877 9.68e-01 120 chrX:1272981-1273101 9.90e-01 120 chrX:11454515-11454635 6.28e-01 120 chr3R:31169127-31169247 2.19e-01 120 chr2L:1628251-1628371 9.51e-01 120 chrX:8892704-8892824 1.04e-01 120 chrX:956005-956125 7.93e-01 120 chrX:15599839-15599959 9.67e-01 120 chr3L:19337844-19337964 5.73e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c26n07.farnam.hpc.yale.internal ********************************************************************************