******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/corto.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:21374079-21374199 1.0000 120 chr2L:8351995-8352115 1.0000 120 chr2L:1989365-1989485 1.0000 120 chr2L:4070105-4070225 1.0000 120 chr3R:24278827-24278947 1.0000 120 chr3R:4479053-4479173 1.0000 120 chr2L:14572259-14572379 1.0000 120 chrX:19316046-19316166 1.0000 120 chrX:18777398-18777518 1.0000 120 chr2L:623681-623801 1.0000 120 chr3R:19310352-19310472 1.0000 120 chr3L:21026045-21026165 1.0000 120 chr2L:13878453-13878573 1.0000 120 chr3R:23189435-23189555 1.0000 120 chr2L:3356839-3356959 1.0000 120 chr3R:4387307-4387427 1.0000 120 chr2L:5247354-5247474 1.0000 120 chr2R:21553786-21553906 1.0000 120 chr2R:22644710-22644830 1.0000 120 chr3L:17492896-17493016 1.0000 120 chrX:3772871-3772991 1.0000 120 chr2L:9949540-9949660 1.0000 120 chr2L:21018585-21018705 1.0000 120 chr3R:20772698-20772818 1.0000 120 chr3L:8151838-8151958 1.0000 120 chr3R:30274909-30275029 1.0000 120 chr3R:17678698-17678818 1.0000 120 chr3L:15547549-15547669 1.0000 120 chr2R:11453136-11453256 1.0000 120 chr3L:18239679-18239799 1.0000 120 chr3R:12974648-12974768 1.0000 120 chr2R:14140335-14140455 1.0000 120 chr3L:9380091-9380211 1.0000 120 chr3L:5852548-5852668 1.0000 120 chr3L:64970-65090 1.0000 120 chr2R:17834137-17834257 1.0000 120 chr3R:9968349-9968469 1.0000 120 chr3R:11565083-11565203 1.0000 120 chr3L:22179796-22179916 1.0000 120 chr3R:19065788-19065908 1.0000 120 chr2R:9843629-9843749 1.0000 120 chrX:687633-687753 1.0000 120 chr2R:9028861-9028981 1.0000 120 chr3L:3425740-3425860 1.0000 120 chr3L:17962179-17962299 1.0000 120 chrX:13284304-13284424 1.0000 120 chr2L:7033763-7033883 1.0000 120 chr3R:17061898-17062018 1.0000 120 chr2R:23983057-23983177 1.0000 120 chr3L:21389921-21390041 1.0000 120 chr3L:8825721-8825841 1.0000 120 chr2L:21008829-21008949 1.0000 120 chrX:9075481-9075601 1.0000 120 chr3R:12960518-12960638 1.0000 120 chr2R:13918690-13918810 1.0000 120 chr3R:22635830-22635950 1.0000 120 chrX:3768365-3768485 1.0000 120 chr3L:18800683-18800803 1.0000 120 chr3L:21256240-21256360 1.0000 120 chr2R:12368402-12368522 1.0000 120 chrX:12736317-12736437 1.0000 120 chrX:1826810-1826930 1.0000 120 chr3L:22823446-22823566 1.0000 120 chr3L:6962113-6962233 1.0000 120 chr2L:700995-701115 1.0000 120 chr2L:2193141-2193261 1.0000 120 chr2L:4937163-4937283 1.0000 120 chr3R:7523770-7523890 1.0000 120 chr3L:10775922-10776042 1.0000 120 chr3L:3251907-3252027 1.0000 120 chrX:11817083-11817203 1.0000 120 chr2R:14984393-14984513 1.0000 120 chr3L:1091145-1091265 1.0000 120 chr2R:14182834-14182954 1.0000 120 chr3R:20534747-20534867 1.0000 120 chr2L:2758365-2758485 1.0000 120 chr3R:12370843-12370963 1.0000 120 chr3L:7942507-7942627 1.0000 120 chr3L:1088239-1088359 1.0000 120 chr3R:4975833-4975953 1.0000 120 chr2R:9551816-9551936 1.0000 120 chr2R:10125568-10125688 1.0000 120 chr2R:21047916-21048036 1.0000 120 chr2L:12459606-12459726 1.0000 120 chr2R:23972207-23972327 1.0000 120 chr2R:17093527-17093647 1.0000 120 chr2R:9148461-9148581 1.0000 120 chr3L:2833679-2833799 1.0000 120 chr3L:1090339-1090459 1.0000 120 chr2L:12113142-12113262 1.0000 120 chr2L:15368507-15368627 1.0000 120 chr2R:11206748-11206868 1.0000 120 chr3R:29096676-29096796 1.0000 120 chr3L:16048778-16048898 1.0000 120 chr3L:8369092-8369212 1.0000 120 chr2R:24046192-24046312 1.0000 120 chr3R:26002331-26002451 1.0000 120 chr3L:13074372-13074492 1.0000 120 chr3L:8448368-8448488 1.0000 120 chr2R:22840120-22840240 1.0000 120 chr3R:25651540-25651660 1.0000 120 chr2L:2365896-2366016 1.0000 120 chr3R:25659004-25659124 1.0000 120 chr3L:16042767-16042887 1.0000 120 chr3L:11492319-11492439 1.0000 120 chr2L:10250100-10250220 1.0000 120 chrX:13635053-13635173 1.0000 120 chr3L:8997640-8997760 1.0000 120 chr2L:10002695-10002815 1.0000 120 chr3R:8642471-8642591 1.0000 120 chr3L:20933845-20933965 1.0000 120 chr3R:7090233-7090353 1.0000 120 chr2L:18564075-18564195 1.0000 120 chr3R:19064200-19064320 1.0000 120 chrX:6343553-6343673 1.0000 120 chr2L:11175488-11175608 1.0000 120 chr2L:5253691-5253811 1.0000 120 chr3L:9056776-9056896 1.0000 120 chr3L:16177233-16177353 1.0000 120 chr2L:11182947-11183067 1.0000 120 chr2L:8095386-8095506 1.0000 120 chr2R:8601926-8602046 1.0000 120 chr3L:2805256-2805376 1.0000 120 chr2L:13837867-13837987 1.0000 120 chr2R:17020130-17020250 1.0000 120 chr2R:6125584-6125704 1.0000 120 chr3R:17713019-17713139 1.0000 120 chrX:12895495-12895615 1.0000 120 chrX:1577259-1577379 1.0000 120 chr3R:24575911-24576031 1.0000 120 chr2L:10264256-10264376 1.0000 120 chr2R:7626384-7626504 1.0000 120 chr2R:18351174-18351294 1.0000 120 chr3R:5083103-5083223 1.0000 120 chr2L:14506948-14507068 1.0000 120 chr3L:18632357-18632477 1.0000 120 chr3R:31610125-31610245 1.0000 120 chr3L:1325477-1325597 1.0000 120 chr3R:15409468-15409588 1.0000 120 chr2R:22537434-22537554 1.0000 120 chr2R:14433376-14433496 1.0000 120 chr2L:9948417-9948537 1.0000 120 chr2L:5242550-5242670 1.0000 120 chr3R:21190858-21190978 1.0000 120 chr3L:6249332-6249452 1.0000 120 chrX:1617244-1617364 1.0000 120 chr2L:9237631-9237751 1.0000 120 chr3R:23191272-23191392 1.0000 120 chr3L:3242282-3242402 1.0000 120 chr3L:19900527-19900647 1.0000 120 chr3R:7497489-7497609 1.0000 120 chr2L:182904-183024 1.0000 120 chr2L:9698370-9698490 1.0000 120 chr2R:7628587-7628707 1.0000 120 chrX:16647886-16648006 1.0000 120 chrX:9062777-9062897 1.0000 120 chr2L:2198052-2198172 1.0000 120 chr3L:12409455-12409575 1.0000 120 chr3L:14241102-14241222 1.0000 120 chr3L:17949623-17949743 1.0000 120 chr2L:8705072-8705192 1.0000 120 chr2L:3648259-3648379 1.0000 120 chr3L:11135937-11136057 1.0000 120 chr2R:12946207-12946327 1.0000 120 chr2R:11633373-11633493 1.0000 120 chr2L:18468795-18468915 1.0000 120 chr2R:21194485-21194605 1.0000 120 chr3L:2838244-2838364 1.0000 120 chr2R:6144355-6144475 1.0000 120 chr3R:22042524-22042644 1.0000 120 chr2R:7779680-7779800 1.0000 120 chr2R:10134819-10134939 1.0000 120 chr2L:5307048-5307168 1.0000 120 chr2L:19543258-19543378 1.0000 120 chrX:7317606-7317726 1.0000 120 chr2L:15745486-15745606 1.0000 120 chr3L:9357897-9358017 1.0000 120 chr3L:11382184-11382304 1.0000 120 chr3L:15511918-15512038 1.0000 120 chrX:4612508-4612628 1.0000 120 chr3L:9694433-9694553 1.0000 120 chr2L:12448353-12448473 1.0000 120 chrX:5904530-5904650 1.0000 120 chr3R:31943883-31944003 1.0000 120 chr3L:17506064-17506184 1.0000 120 chr3R:5660540-5660660 1.0000 120 chr3R:24564925-24565045 1.0000 120 chr3R:29283227-29283347 1.0000 120 chr2R:6708730-6708850 1.0000 120 chr3R:21024259-21024379 1.0000 120 chr3L:3435902-3436022 1.0000 120 chr3R:12717799-12717919 1.0000 120 chr3R:10476148-10476268 1.0000 120 chr3R:7963655-7963775 1.0000 120 chr3L:21972517-21972637 1.0000 120 chr2R:12777284-12777404 1.0000 120 chr3R:9534846-9534966 1.0000 120 chr2L:8239319-8239439 1.0000 120 chr2R:17452471-17452591 1.0000 120 chr2L:2228618-2228738 1.0000 120 chr3R:9954790-9954910 1.0000 120 chrX:3437543-3437663 1.0000 120 chr2L:12493728-12493848 1.0000 120 chr2R:17452259-17452379 1.0000 120 chr3R:5671046-5671166 1.0000 120 chr3L:8825095-8825215 1.0000 120 chrX:19349274-19349394 1.0000 120 chr2R:24836865-24836985 1.0000 120 chr2L:9698597-9698717 1.0000 120 chr3R:9941025-9941145 1.0000 120 chr2R:10100114-10100234 1.0000 120 chr2L:15386796-15386916 1.0000 120 chr3R:24603834-24603954 1.0000 120 chr3L:18828569-18828689 1.0000 120 chr2R:10026123-10026243 1.0000 120 chr2L:8126909-8127029 1.0000 120 chr3L:19557842-19557962 1.0000 120 chr3L:17569887-17570007 1.0000 120 chr3L:7952001-7952121 1.0000 120 chr3R:4883978-4884098 1.0000 120 chr2R:23981000-23981120 1.0000 120 chr3R:11153960-11154080 1.0000 120 chr3L:16178546-16178666 1.0000 120 chr2L:20083589-20083709 1.0000 120 chr3R:28599972-28600092 1.0000 120 chr3R:13684780-13684900 1.0000 120 chr3R:12443986-12444106 1.0000 120 chr3R:31381719-31381839 1.0000 120 chr2R:17436245-17436365 1.0000 120 chr2L:7334293-7334413 1.0000 120 chr2R:12679804-12679924 1.0000 120 chr2L:5146113-5146233 1.0000 120 chr2L:7909322-7909442 1.0000 120 chrX:1664755-1664875 1.0000 120 chr3R:17825814-17825934 1.0000 120 chr3L:225162-225282 1.0000 120 chr2L:21753739-21753859 1.0000 120 chr2L:12720046-12720166 1.0000 120 chr3R:23337379-23337499 1.0000 120 chr3L:3251195-3251315 1.0000 120 chr2L:5294862-5294982 1.0000 120 chr3R:16281416-16281536 1.0000 120 chr2R:9553422-9553542 1.0000 120 chr2R:22666830-22666950 1.0000 120 chr2L:13845272-13845392 1.0000 120 chr2R:15842746-15842866 1.0000 120 chr3L:3096179-3096299 1.0000 120 chr2R:15027660-15027780 1.0000 120 chr2R:11384372-11384492 1.0000 120 chr2R:23942407-23942527 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_corto/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/corto.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.314 C 0.192 G 0.187 T 0.308 Background letter frequencies (from file dataset with add-one prior applied): A 0.314 C 0.192 G 0.187 T 0.308 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GSSAGCNG MEME-1 width = 8 sites = 32 llr = 283 E-value = 2.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSSAGCNG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::8::2: pos.-specific C 365::a3: probability G 7453a:3a matrix T ::::::2: bits 2.4 ** * 2.2 ** * 1.9 ** * 1.7 ** * Relative 1.5 *** ** * Entropy 1.2 *** ** * (12.8 bits) 1.0 ****** * 0.7 ****** * 0.5 ****** * 0.2 ******** 0.0 -------- Multilevel GCCAGCGG consensus CGGG C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSSAGCNG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7628587-7628707 21 8.15e-06 ATCTCTGGAC GCGAGCGG AACTCTTATC chr2R:11206748-11206868 101 8.15e-06 AGCCTTATTA GCCAGCCG TGCTGATAAC chr2R:9551816-9551936 20 8.15e-06 CGTCTGCAGA GCGAGCGG GATAGCAATA chr3R:7523770-7523890 21 8.15e-06 AATTCCAGCG GCGAGCGG CCAGCGAAAA chr2L:14572259-14572379 111 8.15e-06 CATATTTGGT GCGAGCGG CT chr3R:7497489-7497609 28 1.88e-05 CAATATTGAT GGGAGCGG TGCGTCTTTT chr3L:17492896-17493016 9 1.88e-05 CAAAAAGG GGCAGCCG CAAAAAGTTG chr2R:9148461-9148581 111 2.15e-05 TTTCTCGAGA GGGAGCCG CT chr3R:17061898-17062018 32 2.31e-05 TCGTCGTCTG GCCGGCGG ATGGACGACG chr2R:12777284-12777404 72 2.63e-05 TGACTGGACG GCCGGCCG GCCAACTTAC chrX:5904530-5904650 31 2.63e-05 CCACATTTTT GCCGGCCG GCAAAATAAT chr3L:3096179-3096299 83 3.07e-05 TATTTTTATG CCCAGCGG AGGGTTAAAT chr2R:21553786-21553906 5 3.07e-05 GCTG CCCAGCGG CAACCTCGAC chr3L:19557842-19557962 84 4.25e-05 ACAAAAAACA GCCAGCAG CCAGCAAAAA chr3L:10775922-10776042 39 4.25e-05 TTCAGAAGTG GCCAGCAG CTCCATTCCA chr3L:11382184-11382304 6 5.73e-05 AGGAT GCCAGCTG AGACCCAGCA chr2L:2365896-2366016 79 5.73e-05 TTGATTTCTT GCGAGCAG TAAAATTAAT chr2R:17452471-17452591 69 7.59e-05 TGTGTATATT CGCAGCCG CGTTATCTTT chr2L:21018585-21018705 17 7.59e-05 GGAACTTGAG CGGAGCGG AGCAAATGAA chrX:3772871-3772991 62 7.59e-05 gaaaaacacg cgcagccg aaacgaagcg chr3R:19310352-19310472 102 7.59e-05 TTGCTAAACC GGCAGCAG GACACAAAAA chr3R:17825814-17825934 71 8.73e-05 GAGAGAAATG GGGAGCAG AAAAAGGCTT chr2L:12493728-12493848 27 8.73e-05 CACACACGAC CGGAGCCG AAGCTAtttt chr2R:14433376-14433496 17 8.73e-05 CGACAGCAAC GGCAGCTG CTCCaaaaac chr2R:21047916-21048036 18 8.73e-05 ACACCTCGAT CGGAGCCG TTTCAGAAAT chr2L:5253691-5253811 62 9.92e-05 AATTCGCCTG GCCGGCAG ACGTGGCTGG chr2L:12720046-12720166 75 1.06e-04 AACAATTTGT GCCGGCTG GCATGATCTG chr3L:9694433-9694553 68 1.06e-04 TCGCCAAAAC GCGGGCAG CGACGTCGAC chrX:12895495-12895615 41 1.15e-04 GGGAGGGAGA GCGGGCTG ATAAAGCAAC chr3R:31943883-31944003 41 1.30e-04 AAGACAAGTG CGGGGCGG AGATATGTGG chr2L:5294862-5294982 43 1.41e-04 ATTTCTTGCG CCGAGCTG CGCCGTTGGC chr2R:11384372-11384492 95 1.57e-04 TTACTAAAAG CGCAGCTG AAACACGCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSSAGCNG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7628587-7628707 8.2e-06 20_[+1]_92 chr2R:11206748-11206868 8.2e-06 100_[+1]_12 chr2R:9551816-9551936 8.2e-06 19_[+1]_93 chr3R:7523770-7523890 8.2e-06 20_[+1]_92 chr2L:14572259-14572379 8.2e-06 110_[+1]_2 chr3R:7497489-7497609 1.9e-05 27_[+1]_85 chr3L:17492896-17493016 1.9e-05 8_[+1]_104 chr2R:9148461-9148581 2.1e-05 110_[+1]_2 chr3R:17061898-17062018 2.3e-05 31_[+1]_81 chr2R:12777284-12777404 2.6e-05 71_[+1]_41 chrX:5904530-5904650 2.6e-05 30_[+1]_82 chr3L:3096179-3096299 3.1e-05 82_[+1]_30 chr2R:21553786-21553906 3.1e-05 4_[+1]_108 chr3L:19557842-19557962 4.2e-05 83_[+1]_29 chr3L:10775922-10776042 4.2e-05 38_[+1]_74 chr3L:11382184-11382304 5.7e-05 5_[+1]_107 chr2L:2365896-2366016 5.7e-05 78_[+1]_34 chr2R:17452471-17452591 7.6e-05 68_[+1]_44 chr2L:21018585-21018705 7.6e-05 16_[+1]_96 chrX:3772871-3772991 7.6e-05 61_[+1]_51 chr3R:19310352-19310472 7.6e-05 101_[+1]_11 chr3R:17825814-17825934 8.7e-05 70_[+1]_42 chr2L:12493728-12493848 8.7e-05 26_[+1]_86 chr2R:14433376-14433496 8.7e-05 16_[+1]_96 chr2R:21047916-21048036 8.7e-05 17_[+1]_95 chr2L:5253691-5253811 9.9e-05 61_[+1]_51 chr2L:12720046-12720166 0.00011 74_[+1]_38 chr3L:9694433-9694553 0.00011 67_[+1]_45 chrX:12895495-12895615 0.00012 40_[+1]_72 chr3R:31943883-31944003 0.00013 40_[+1]_72 chr2L:5294862-5294982 0.00014 42_[+1]_70 chr2R:11384372-11384492 0.00016 94_[+1]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSSAGCNG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSSAGCNG width=8 seqs=32 chr2R:7628587-7628707 ( 21) GCGAGCGG 1 chr2R:11206748-11206868 ( 101) GCCAGCCG 1 chr2R:9551816-9551936 ( 20) GCGAGCGG 1 chr3R:7523770-7523890 ( 21) GCGAGCGG 1 chr2L:14572259-14572379 ( 111) GCGAGCGG 1 chr3R:7497489-7497609 ( 28) GGGAGCGG 1 chr3L:17492896-17493016 ( 9) GGCAGCCG 1 chr2R:9148461-9148581 ( 111) GGGAGCCG 1 chr3R:17061898-17062018 ( 32) GCCGGCGG 1 chr2R:12777284-12777404 ( 72) GCCGGCCG 1 chrX:5904530-5904650 ( 31) GCCGGCCG 1 chr3L:3096179-3096299 ( 83) CCCAGCGG 1 chr2R:21553786-21553906 ( 5) CCCAGCGG 1 chr3L:19557842-19557962 ( 84) GCCAGCAG 1 chr3L:10775922-10776042 ( 39) GCCAGCAG 1 chr3L:11382184-11382304 ( 6) GCCAGCTG 1 chr2L:2365896-2366016 ( 79) GCGAGCAG 1 chr2R:17452471-17452591 ( 69) CGCAGCCG 1 chr2L:21018585-21018705 ( 17) CGGAGCGG 1 chrX:3772871-3772991 ( 62) CGCAGCCG 1 chr3R:19310352-19310472 ( 102) GGCAGCAG 1 chr3R:17825814-17825934 ( 71) GGGAGCAG 1 chr2L:12493728-12493848 ( 27) CGGAGCCG 1 chr2R:14433376-14433496 ( 17) GGCAGCTG 1 chr2R:21047916-21048036 ( 18) CGGAGCCG 1 chr2L:5253691-5253811 ( 62) GCCGGCAG 1 chr2L:12720046-12720166 ( 75) GCCGGCTG 1 chr3L:9694433-9694553 ( 68) GCGGGCAG 1 chrX:12895495-12895615 ( 41) GCGGGCTG 1 chr3R:31943883-31944003 ( 41) CGGGGCGG 1 chr2L:5294862-5294982 ( 43) CCGAGCTG 1 chr2R:11384372-11384492 ( 95) CGCAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSSAGCNG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 2.1e-001 -1164 71 188 -1164 -1164 163 112 -1164 -1164 147 133 -1164 126 -1164 42 -1164 -1164 -1164 242 -1164 -1164 238 -1164 -1164 -52 55 74 -72 -1164 -1164 242 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSSAGCNG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 2.1e-001 0.000000 0.312500 0.687500 0.000000 0.000000 0.593750 0.406250 0.000000 0.000000 0.531250 0.468750 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.218750 0.281250 0.312500 0.187500 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSSAGCNG MEME-1 regular expression -------------------------------------------------------------------------------- [GC][CG][CG][AG]GC[GCA]G -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF MAAMAAMA MEME-2 width = 8 sites = 83 llr = 595 E-value = 4.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAAMAAMA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4a857a5a pos.-specific C 6:253:5: probability G :::::::: matrix T :::::::: bits 2.4 2.2 1.9 1.7 * * * Relative 1.5 * * * Entropy 1.2 *** * * (10.3 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAACAAAA consensus A AC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAMAAMA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16178546-16178666 103 2.16e-05 TGCAGACCGa caacaaca gccgcaacaa chr3L:9357897-9358017 61 2.16e-05 GAGGAACCAG CAACAACA AACCTCTGCT chr3L:19900527-19900647 112 2.16e-05 TCCAGAAAAA CAACAACA A chr3R:24575911-24576031 113 2.16e-05 GCCCCAACAG CAACAACA chrX:1577259-1577379 76 2.16e-05 ccaaaacaaa caacaaca aaaGCTGCAC chrX:12895495-12895615 67 2.16e-05 ACAGGAGCAA CAACAACA GCAAACAAAT chr3R:17713019-17713139 58 2.16e-05 TCAGCTGTGA CAACAACA AGTTTCTCTG chrX:12736317-12736437 106 2.16e-05 CCCCAACCAA CAACAACA ATTTGTC chrX:13284304-13284424 4 2.16e-05 AAA CAACAACA AAAGATCCGC chrX:687633-687753 57 2.16e-05 TACCGAAAGG CAACAACA AATGCTCAAA chr3L:9380091-9380211 37 2.16e-05 TAAACAACTA CAACAACA gctggctggc chr2R:22644710-22644830 19 2.16e-05 CGTTGTTTAT CAACAACA AAGAGAAAAA chr3R:31381719-31381839 39 5.69e-05 TATGCGCGGG CAACAAAA GACGTTCGAA chr2R:23981000-23981120 60 5.69e-05 CCGGAAAGGT CAACAAAA GTTTGACTGA chr3L:19557842-19557962 66 5.69e-05 TTCGGGGCTG CAACAAAA ACAAAAAACA chr2R:11633373-11633493 88 5.69e-05 CGCCAAAAAA CAACAAAA ACGCATGCGC chr3L:11135937-11136057 9 5.69e-05 AGAAAGCC CAACAAAA GTTTTGTTCC chrX:16647886-16648006 70 5.69e-05 GCAATCGCAG CAACAAAA CCAAGCTGAC chr2R:17020130-17020250 63 5.69e-05 CTTACACATA CAACAAAA TACGAATAAG chr2R:14140335-14140455 86 5.69e-05 acCGGCCAAA CAACAAAA ATTCTTTCGC chr3L:18239679-18239799 10 5.69e-05 catacacca caacaaaa tatacaacaa chr3R:30274909-30275029 26 5.69e-05 CGACAAGTGG CAACAAAA TGGAGTTTGG chr3R:19064200-19064320 3 1.05e-04 AA CAAAAACA ACGCCACAAT chr2L:18564075-18564195 44 1.05e-04 AAAACAGGAA CAAAAACA GAAGCAAAAT chr2R:10125568-10125688 84 1.05e-04 AAAGTCGCTG CAAAAACA GCCTAATTTG chr2R:14984393-14984513 92 1.05e-04 GCAAAAATAA CAAAAACA ATTGTAGGAA chr3R:7523770-7523890 55 1.05e-04 ACAAAATAGG CAAAAACA AGTAAAGAAA chrX:1826810-1826930 24 1.05e-04 TTGGCATTGG CAAAAACA TCAGCAGTTT chr2R:22537434-22537554 51 1.27e-04 AGCTAAAGTC CAACCAAA TTTCATTAAA chr2L:7334293-7334413 107 2.20e-04 ATCGCGGGGC Caaaaaaa aaaaaa chr3R:9941025-9941145 39 2.20e-04 GTTGCTGGCA CAAAAAAA TACAACAAAC chr2L:2198052-2198172 36 2.20e-04 AAACCCCTCG CAAAAAAA GGGAGCTTGC chr3L:2805256-2805376 27 2.20e-04 TTTGTATGGG CAAAAAAA TGACAGAACC chr3L:18800683-18800803 99 2.20e-04 AAGCTCTCAG AAACAACA ACTATAAATT chr2R:9028861-9028981 60 2.20e-04 GAGATGTTAC CAAAAAAA TAAAAAGACA chr2L:21018585-21018705 80 2.20e-04 CAGCAGCAGC AAACAACA CATGAGAGTT chr3L:17492896-17493016 98 2.20e-04 AATCTTTTTA AAACAACA AGCGAAACAC chr3L:21026045-21026165 41 2.20e-04 TGGTTTCGAA AAACAACA GTAGCTCAAA chr2R:13918690-13918810 75 2.55e-04 ATTCAAGTGC CAAACACA TAAAGCCATA chr3R:12960518-12960638 44 2.55e-04 GCCATCTGGA CAAACACA GGGGCGTTAC chrX:1664755-1664875 111 3.13e-04 ATAAAAACCA AAACAAAA AA chr3L:18828569-18828689 23 3.13e-04 TTTGAACATC AAACAAAA TAAGTTATTG chr2L:15386796-15386916 15 3.13e-04 ACAGGTTACA AAACAAAA GTGGCAACAT chr2L:12493728-12493848 5 3.13e-04 CGAG AAACAAAA TTTACACACA chrX:3437543-3437663 18 3.13e-04 GAAACGGGCC AAACAAAA AATCGACAAA chr2R:7628587-7628707 105 3.13e-04 CGAAGTGGGC AAACAAAA TCCAATAT chr2L:9948417-9948537 98 3.13e-04 TTTCATTCTG AAACAAAA GCGAGCTCTA chr3R:21374079-21374199 22 3.13e-04 TGGAATGAAA AAACAAAA TCAGCACGCA chr2L:623681-623801 84 3.34e-04 TCTTTTCTTA CACCAAAA TGATGTTCAA chr2L:12720046-12720166 101 3.91e-04 TGATCCAGAA CAAACAAA CCGTGTGTGT chrX:19349274-19349394 28 3.91e-04 GTTATGCCAT AAACCACA TATTCACCCC chrX:4612508-4612628 67 3.91e-04 AGATAATGTG AAACCACA ATCGAGTTAG chrX:9075481-9075601 93 3.91e-04 TCGACGAAAG CAAACAAA CGGATCGGTC chr2L:7033763-7033883 69 3.91e-04 GTAGGTTAGC AAACCACA TTTTTCCGTA chr2R:8601926-8602046 76 4.57e-04 GTCGTGGAAA AAAAAACA ACCATATCTT chr3L:1090339-1090459 23 4.57e-04 GCATTAAAAA AAAAAACA CAGAAAGCAG chr2R:7626384-7626504 83 5.14e-04 CCGTAAAAAT AAACCAAA ATTCCTTTGA chr3L:16042767-16042887 2 5.14e-04 a aaaccaaa ccaaCGAACC chr3L:21389921-21390041 44 5.14e-04 AATTAGGCTG AAACCAAA AGCAAAAATG chrX:3772871-3772991 81 5.14e-04 aacgaagcgc aaaccaaa gagtaaagcg chr3L:225162-225282 91 6.22e-04 AGACAAAGAA AAAAAAAA CTCGATATAC chr2L:5146113-5146233 107 6.22e-04 AAATGGTTGA AAAAAAAA CGTGTT chr3R:21024259-21024379 77 6.22e-04 tataaaagaa aaaaaaaa aagaaaGCAG chr2R:6708730-6708850 49 6.22e-04 AGTTTTATGG CACCCAAA TTTAACGCAG chr2L:12448353-12448473 91 6.22e-04 AACCGAAGTT AAAAAAAA GAGAGTTACG chr2L:5242550-5242670 94 6.22e-04 ATTATTAATA AAAAAAAA GTTCAATGAT chr3R:15409468-15409588 52 6.22e-04 CGGTTGACTA AAAAAAAA TTAAAAGGTG chr2R:11453136-11453256 64 6.22e-04 ATTTAAATAA AAAAAAAA AATCATGACT chr3R:17678698-17678818 106 6.22e-04 CTGCTGAGAT AAAAAAAA TGCACTG chr3R:19310352-19310472 112 6.79e-04 GGCAGCAGGA CACAAAAA T chr2R:17452259-17452379 58 7.27e-04 TGACTGGACA CACACACA TGTGCGAATT chr3L:21972517-21972637 103 7.27e-04 CTTACATATG CACACACA GAGAAACATA chr3R:24564925-24565045 91 7.27e-04 AAAAATTCCC CACACACA CCGATACGTC chr3L:17506064-17506184 33 7.27e-04 TTTCACTGCA CACACACA TAGTTGATTA chrX:5904530-5904650 94 7.27e-04 GTGCGATATT Cacacaca ttcaagcata chr3R:25659004-25659124 60 7.27e-04 TATATGTACA CACACACA CATAAATGCC chr3L:17962179-17962299 32 7.27e-04 TGACCCACCC CACACACA AAGCAAGTTC chr3L:18632357-18632477 73 8.20e-04 CTGGCATGCT AAAACAAA GGCTTGTCAT chr3R:28599972-28600092 36 8.55e-04 ATGTAAGTAG CACACAAA ACCGCGACTG chr2L:9698370-9698490 113 8.55e-04 AACAAAATCG CACACAAA chr2R:9553422-9553542 43 8.91e-04 ATTTTTATGG AACAAACA CTCATACATG chr3R:9954790-9954910 95 8.91e-04 CGCAGAAGCC AACAAACA ACTTGTTGTT chr3L:6249332-6249452 48 9.70e-04 TCATTTTTTG AACAAAAA CCTGTTTTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAMAAMA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16178546-16178666 2.2e-05 102_[+2]_10 chr3L:9357897-9358017 2.2e-05 60_[+2]_52 chr3L:19900527-19900647 2.2e-05 111_[+2]_1 chr3R:24575911-24576031 2.2e-05 112_[+2] chrX:1577259-1577379 2.2e-05 75_[+2]_37 chrX:12895495-12895615 2.2e-05 66_[+2]_46 chr3R:17713019-17713139 2.2e-05 57_[+2]_55 chrX:12736317-12736437 2.2e-05 105_[+2]_7 chrX:13284304-13284424 2.2e-05 3_[+2]_109 chrX:687633-687753 2.2e-05 56_[+2]_56 chr3L:9380091-9380211 2.2e-05 36_[+2]_76 chr2R:22644710-22644830 2.2e-05 18_[+2]_94 chr3R:31381719-31381839 5.7e-05 38_[+2]_74 chr2R:23981000-23981120 5.7e-05 59_[+2]_53 chr3L:19557842-19557962 5.7e-05 65_[+2]_47 chr2R:11633373-11633493 5.7e-05 87_[+2]_25 chr3L:11135937-11136057 5.7e-05 8_[+2]_104 chrX:16647886-16648006 5.7e-05 69_[+2]_43 chr2R:17020130-17020250 5.7e-05 62_[+2]_50 chr2R:14140335-14140455 5.7e-05 85_[+2]_27 chr3L:18239679-18239799 5.7e-05 9_[+2]_103 chr3R:30274909-30275029 5.7e-05 25_[+2]_87 chr3R:19064200-19064320 0.00011 2_[+2]_110 chr2L:18564075-18564195 0.00011 43_[+2]_69 chr2R:10125568-10125688 0.00011 83_[+2]_29 chr2R:14984393-14984513 0.00011 91_[+2]_21 chr3R:7523770-7523890 0.00011 54_[+2]_58 chrX:1826810-1826930 0.00011 23_[+2]_89 chr2R:22537434-22537554 0.00013 50_[+2]_62 chr2L:7334293-7334413 0.00022 106_[+2]_6 chr3R:9941025-9941145 0.00022 38_[+2]_74 chr2L:2198052-2198172 0.00022 35_[+2]_77 chr3L:2805256-2805376 0.00022 26_[+2]_86 chr3L:18800683-18800803 0.00022 98_[+2]_14 chr2R:9028861-9028981 0.00022 59_[+2]_53 chr2L:21018585-21018705 0.00022 79_[+2]_33 chr3L:17492896-17493016 0.00022 97_[+2]_15 chr3L:21026045-21026165 0.00022 40_[+2]_72 chr2R:13918690-13918810 0.00026 74_[+2]_38 chr3R:12960518-12960638 0.00026 43_[+2]_69 chrX:1664755-1664875 0.00031 110_[+2]_2 chr3L:18828569-18828689 0.00031 22_[+2]_90 chr2L:15386796-15386916 0.00031 14_[+2]_98 chr2L:12493728-12493848 0.00031 4_[+2]_108 chrX:3437543-3437663 0.00031 17_[+2]_95 chr2R:7628587-7628707 0.00031 104_[+2]_8 chr2L:9948417-9948537 0.00031 97_[+2]_15 chr3R:21374079-21374199 0.00031 21_[+2]_91 chr2L:623681-623801 0.00033 83_[+2]_29 chr2L:12720046-12720166 0.00039 100_[+2]_12 chrX:19349274-19349394 0.00039 27_[+2]_85 chrX:4612508-4612628 0.00039 66_[+2]_46 chrX:9075481-9075601 0.00039 92_[+2]_20 chr2L:7033763-7033883 0.00039 68_[+2]_44 chr2R:8601926-8602046 0.00046 75_[+2]_37 chr3L:1090339-1090459 0.00046 22_[+2]_90 chr2R:7626384-7626504 0.00051 82_[+2]_30 chr3L:16042767-16042887 0.00051 1_[+2]_111 chr3L:21389921-21390041 0.00051 43_[+2]_69 chrX:3772871-3772991 0.00051 80_[+2]_32 chr3L:225162-225282 0.00062 90_[+2]_22 chr2L:5146113-5146233 0.00062 106_[+2]_6 chr3R:21024259-21024379 0.00062 76_[+2]_36 chr2R:6708730-6708850 0.00062 48_[+2]_64 chr2L:12448353-12448473 0.00062 90_[+2]_22 chr2L:5242550-5242670 0.00062 93_[+2]_19 chr3R:15409468-15409588 0.00062 51_[+2]_61 chr2R:11453136-11453256 0.00062 63_[+2]_49 chr3R:17678698-17678818 0.00062 105_[+2]_7 chr3R:19310352-19310472 0.00068 111_[+2]_1 chr2R:17452259-17452379 0.00073 57_[+2]_55 chr3L:21972517-21972637 0.00073 102_[+2]_10 chr3R:24564925-24565045 0.00073 90_[+2]_22 chr3L:17506064-17506184 0.00073 32_[+2]_80 chrX:5904530-5904650 0.00073 93_[+2]_19 chr3R:25659004-25659124 0.00073 59_[+2]_53 chr3L:17962179-17962299 0.00073 31_[+2]_81 chr3L:18632357-18632477 0.00082 72_[+2]_40 chr3R:28599972-28600092 0.00086 35_[+2]_77 chr2L:9698370-9698490 0.00086 112_[+2] chr2R:9553422-9553542 0.00089 42_[+2]_70 chr3R:9954790-9954910 0.00089 94_[+2]_18 chr3L:6249332-6249452 0.00097 47_[+2]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAMAAMA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAAMAAMA width=8 seqs=83 chr3L:16178546-16178666 ( 103) CAACAACA 1 chr3L:9357897-9358017 ( 61) CAACAACA 1 chr3L:19900527-19900647 ( 112) CAACAACA 1 chr3R:24575911-24576031 ( 113) CAACAACA 1 chrX:1577259-1577379 ( 76) CAACAACA 1 chrX:12895495-12895615 ( 67) CAACAACA 1 chr3R:17713019-17713139 ( 58) CAACAACA 1 chrX:12736317-12736437 ( 106) CAACAACA 1 chrX:13284304-13284424 ( 4) CAACAACA 1 chrX:687633-687753 ( 57) CAACAACA 1 chr3L:9380091-9380211 ( 37) CAACAACA 1 chr2R:22644710-22644830 ( 19) CAACAACA 1 chr3R:31381719-31381839 ( 39) CAACAAAA 1 chr2R:23981000-23981120 ( 60) CAACAAAA 1 chr3L:19557842-19557962 ( 66) CAACAAAA 1 chr2R:11633373-11633493 ( 88) CAACAAAA 1 chr3L:11135937-11136057 ( 9) CAACAAAA 1 chrX:16647886-16648006 ( 70) CAACAAAA 1 chr2R:17020130-17020250 ( 63) CAACAAAA 1 chr2R:14140335-14140455 ( 86) CAACAAAA 1 chr3L:18239679-18239799 ( 10) CAACAAAA 1 chr3R:30274909-30275029 ( 26) CAACAAAA 1 chr3R:19064200-19064320 ( 3) CAAAAACA 1 chr2L:18564075-18564195 ( 44) CAAAAACA 1 chr2R:10125568-10125688 ( 84) CAAAAACA 1 chr2R:14984393-14984513 ( 92) CAAAAACA 1 chr3R:7523770-7523890 ( 55) CAAAAACA 1 chrX:1826810-1826930 ( 24) CAAAAACA 1 chr2R:22537434-22537554 ( 51) CAACCAAA 1 chr2L:7334293-7334413 ( 107) CAAAAAAA 1 chr3R:9941025-9941145 ( 39) CAAAAAAA 1 chr2L:2198052-2198172 ( 36) CAAAAAAA 1 chr3L:2805256-2805376 ( 27) CAAAAAAA 1 chr3L:18800683-18800803 ( 99) AAACAACA 1 chr2R:9028861-9028981 ( 60) CAAAAAAA 1 chr2L:21018585-21018705 ( 80) AAACAACA 1 chr3L:17492896-17493016 ( 98) AAACAACA 1 chr3L:21026045-21026165 ( 41) AAACAACA 1 chr2R:13918690-13918810 ( 75) CAAACACA 1 chr3R:12960518-12960638 ( 44) CAAACACA 1 chrX:1664755-1664875 ( 111) AAACAAAA 1 chr3L:18828569-18828689 ( 23) AAACAAAA 1 chr2L:15386796-15386916 ( 15) AAACAAAA 1 chr2L:12493728-12493848 ( 5) AAACAAAA 1 chrX:3437543-3437663 ( 18) AAACAAAA 1 chr2R:7628587-7628707 ( 105) AAACAAAA 1 chr2L:9948417-9948537 ( 98) AAACAAAA 1 chr3R:21374079-21374199 ( 22) AAACAAAA 1 chr2L:623681-623801 ( 84) CACCAAAA 1 chr2L:12720046-12720166 ( 101) CAAACAAA 1 chrX:19349274-19349394 ( 28) AAACCACA 1 chrX:4612508-4612628 ( 67) AAACCACA 1 chrX:9075481-9075601 ( 93) CAAACAAA 1 chr2L:7033763-7033883 ( 69) AAACCACA 1 chr2R:8601926-8602046 ( 76) AAAAAACA 1 chr3L:1090339-1090459 ( 23) AAAAAACA 1 chr2R:7626384-7626504 ( 83) AAACCAAA 1 chr3L:16042767-16042887 ( 2) AAACCAAA 1 chr3L:21389921-21390041 ( 44) AAACCAAA 1 chrX:3772871-3772991 ( 81) AAACCAAA 1 chr3L:225162-225282 ( 91) AAAAAAAA 1 chr2L:5146113-5146233 ( 107) AAAAAAAA 1 chr3R:21024259-21024379 ( 77) AAAAAAAA 1 chr2R:6708730-6708850 ( 49) CACCCAAA 1 chr2L:12448353-12448473 ( 91) AAAAAAAA 1 chr2L:5242550-5242670 ( 94) AAAAAAAA 1 chr3R:15409468-15409588 ( 52) AAAAAAAA 1 chr2R:11453136-11453256 ( 64) AAAAAAAA 1 chr3R:17678698-17678818 ( 106) AAAAAAAA 1 chr3R:19310352-19310472 ( 112) CACAAAAA 1 chr2R:17452259-17452379 ( 58) CACACACA 1 chr3L:21972517-21972637 ( 103) CACACACA 1 chr3R:24564925-24565045 ( 91) CACACACA 1 chr3L:17506064-17506184 ( 33) CACACACA 1 chrX:5904530-5904650 ( 94) CACACACA 1 chr3R:25659004-25659124 ( 60) CACACACA 1 chr3L:17962179-17962299 ( 32) CACACACA 1 chr3L:18632357-18632477 ( 73) AAAACAAA 1 chr3R:28599972-28600092 ( 36) CACACAAA 1 chr2L:9698370-9698490 ( 113) CACACAAA 1 chr2R:9553422-9553542 ( 43) AACAAACA 1 chr3R:9954790-9954910 ( 95) AACAAACA 1 chr3L:6249332-6249452 ( 48) AACAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAMAAMA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.38464 E= 4.5e+001 34 165 -1302 -1302 167 -1302 -1302 -1302 139 -8 -1302 -1302 58 147 -1302 -1302 121 53 -1302 -1302 167 -1302 -1302 -1302 79 126 -1302 -1302 167 -1302 -1302 -1302 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAMAAMA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 4.5e+001 0.397590 0.602410 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.819277 0.180723 0.000000 0.000000 0.469880 0.530120 0.000000 0.000000 0.722892 0.277108 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.542169 0.457831 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAMAAMA MEME-2 regular expression -------------------------------------------------------------------------------- [CA]AA[CA][AC]A[AC]A -------------------------------------------------------------------------------- Time 13.67 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGGCTGG MEME-3 width = 8 sites = 22 llr = 199 E-value = 6.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGGCTGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1:1:2:: pos.-specific C 7:::a::2 probability G 3:99::98 matrix T :91::81: bits 2.4 * 2.2 * 1.9 * 1.7 *** ** Relative 1.5 * *** ** Entropy 1.2 ***** ** (13.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGGCTGG consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGCTGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3251195-3251315 82 4.28e-06 ATTCCCCCAT CTGGCTGG CCTATTTTCG chr2L:8095386-8095506 44 4.28e-06 CCATTAAATG CTGGCTGG CAGTAAATGC chrX:13635053-13635173 17 4.28e-06 TTGTGAGTGC CTGGCTGG CCGCTGGCTA chr3L:9380091-9380211 50 4.28e-06 CAACAgctgg ctggctgg ctggctggca chr3R:31943883-31944003 55 8.44e-06 GCGGAGATAT GTGGCTGG TTTGCTCAGG chr2L:5253691-5253811 72 8.44e-06 GCCGGCAGAC GTGGCTGG AATTTTAAAT chr3L:22179796-22179916 84 1.28e-05 GCAATTTTCG CTGGCAGG CTGCAAGGAT chr3R:17825814-17825934 2 2.14e-05 A GTGGCAGG TGCAAAAATC chr3L:1091145-1091265 95 2.57e-05 TGTATTTGCC GTGGCTGC AGCCCCGTCT chr3L:19557842-19557962 36 4.42e-05 AACTTGTTAC CAGGCTGG GGCGAAACTG chr2L:11175488-11175608 8 4.42e-05 CGTTTCT CTGGCTTG TCTCCTCTTC chr3L:20933845-20933965 53 4.42e-05 TTAAAACCAA CTTGCTGG ATTCACATTT chr3L:16042767-16042887 76 4.42e-05 GAAAATCAAA CTGGCTTG GAGTGCCATC chr3R:17678698-17678818 34 4.42e-05 GTTGACTGGG CTTGCTGG ACGTTATATT chr2R:12777284-12777404 61 5.13e-05 GACTGCTTGA CTGACTGG ACGGCCGGCC chr3L:8825095-8825215 25 5.58e-05 AAGGGGCAGC CTGGCAGC taaaatataa chr2R:9551816-9551936 43 5.58e-05 CAATAGCTCT CTGGCAGC TTTCTTTTGC chr3R:9941025-9941145 29 7.38e-05 CCTCAATGAA GTTGCTGG CACAAAAAAA chr2R:17452259-17452379 47 8.08e-05 TATCCATGAA GTGACTGG ACACACACAC chr3R:17061898-17062018 58 8.08e-05 CGTCCCGACA GTGACTGG TTTTTTAATG chr3L:18632357-18632477 63 1.04e-04 CATTGCTGTT CTGGCATG CTAAAACAAA chr3L:8448368-8448488 23 1.30e-04 ACAATTTAAG CAGGCTGC AACAGGCTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGCTGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3251195-3251315 4.3e-06 81_[+3]_31 chr2L:8095386-8095506 4.3e-06 43_[+3]_69 chrX:13635053-13635173 4.3e-06 16_[+3]_96 chr3L:9380091-9380211 4.3e-06 49_[+3]_63 chr3R:31943883-31944003 8.4e-06 54_[+3]_58 chr2L:5253691-5253811 8.4e-06 71_[+3]_41 chr3L:22179796-22179916 1.3e-05 83_[+3]_29 chr3R:17825814-17825934 2.1e-05 1_[+3]_111 chr3L:1091145-1091265 2.6e-05 94_[+3]_18 chr3L:19557842-19557962 4.4e-05 35_[+3]_77 chr2L:11175488-11175608 4.4e-05 7_[+3]_105 chr3L:20933845-20933965 4.4e-05 52_[+3]_60 chr3L:16042767-16042887 4.4e-05 75_[+3]_37 chr3R:17678698-17678818 4.4e-05 33_[+3]_79 chr2R:12777284-12777404 5.1e-05 60_[+3]_52 chr3L:8825095-8825215 5.6e-05 24_[+3]_88 chr2R:9551816-9551936 5.6e-05 42_[+3]_70 chr3R:9941025-9941145 7.4e-05 28_[+3]_84 chr2R:17452259-17452379 8.1e-05 46_[+3]_66 chr3R:17061898-17062018 8.1e-05 57_[+3]_55 chr3L:18632357-18632477 0.0001 62_[+3]_50 chr3L:8448368-8448488 0.00013 22_[+3]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGCTGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGGCTGG width=8 seqs=22 chr3L:3251195-3251315 ( 82) CTGGCTGG 1 chr2L:8095386-8095506 ( 44) CTGGCTGG 1 chrX:13635053-13635173 ( 17) CTGGCTGG 1 chr3L:9380091-9380211 ( 50) CTGGCTGG 1 chr3R:31943883-31944003 ( 55) GTGGCTGG 1 chr2L:5253691-5253811 ( 72) GTGGCTGG 1 chr3L:22179796-22179916 ( 84) CTGGCAGG 1 chr3R:17825814-17825934 ( 2) GTGGCAGG 1 chr3L:1091145-1091265 ( 95) GTGGCTGC 1 chr3L:19557842-19557962 ( 36) CAGGCTGG 1 chr2L:11175488-11175608 ( 8) CTGGCTTG 1 chr3L:20933845-20933965 ( 53) CTTGCTGG 1 chr3L:16042767-16042887 ( 76) CTGGCTTG 1 chr3R:17678698-17678818 ( 34) CTTGCTGG 1 chr2R:12777284-12777404 ( 61) CTGACTGG 1 chr3L:8825095-8825215 ( 25) CTGGCAGC 1 chr2R:9551816-9551936 ( 43) CTGGCAGC 1 chr3R:9941025-9941145 ( 29) GTTGCTGG 1 chr2R:17452259-17452379 ( 47) GTGACTGG 1 chr3R:17061898-17062018 ( 58) GTGACTGG 1 chr3L:18632357-18632477 ( 63) CTGGCATG 1 chr3L:8448368-8448488 ( 23) CAGGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGCTGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8596 E= 6.2e+003 -1110 183 77 -1110 -178 -1110 -1110 156 -1110 -1110 221 -118 -120 -1110 221 -1110 -1110 238 -1110 -1110 -46 -1110 -1110 133 -1110 -1110 221 -118 -1110 -8 213 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGCTGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 6.2e+003 0.000000 0.681818 0.318182 0.000000 0.090909 0.000000 0.000000 0.909091 0.000000 0.000000 0.863636 0.136364 0.136364 0.000000 0.863636 0.000000 0.000000 1.000000 0.000000 0.000000 0.227273 0.000000 0.000000 0.772727 0.000000 0.000000 0.863636 0.136364 0.000000 0.181818 0.818182 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGCTGG MEME-3 regular expression -------------------------------------------------------------------------------- [CG]TGGC[TA]GG -------------------------------------------------------------------------------- Time 19.74 secs. ******************************************************************************** ******************************************************************************** MOTIF CGBCGWCG MEME-4 width = 8 sites = 15 llr = 148 E-value = 4.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGBCGWCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::1::5:: pos.-specific C a:3a3:a: probability G :a3:72:a matrix T ::2::3:: bits 2.4 ** * ** 2.2 ** * ** 1.9 ** * ** 1.7 ** ** ** Relative 1.5 ** ** ** Entropy 1.2 ** ** ** (14.2 bits) 1.0 ** ** ** 0.7 ** ** ** 0.5 ** ***** 0.2 ******** 0.0 -------- Multilevel CGCCGACG consensus G CT sequence T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGBCGWCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3242282-3242402 85 5.51e-06 ATTTTGGGGC CGCCGACG TCTTGCTCTT chrX:1617244-1617364 41 5.51e-06 TCGACAGCGA CGGCGACG TCGGCAGAGA chr3R:26002331-26002451 59 5.51e-06 GAACGAATGG CGGCGACG TAACCGAACC chr2L:8351995-8352115 41 5.51e-06 AACTCCTTAT CGGCGACG ATTGTCTGGC chr3L:9380091-9380211 18 8.79e-06 GGATTCGAGT CGCCGGCG ATAAACAACT chrX:687633-687753 79 1.42e-05 CTCAAATCTG CGGCGTCG TCGCTGCGTC chr3L:9694433-9694553 79 1.87e-05 CGGGCAGCGA CGTCGACG TCGTCGCCTT chr2L:5146113-5146233 50 2.43e-05 CAACTTTGAC CGCCCACG CCCACCCAAA chr2R:14984393-14984513 3 2.43e-05 CT CGGCCACG CTACCCATAA chr2R:9028861-9028981 79 3.16e-05 AAAAAGACAG CGTCGGCG TTGCTGATAA chr3R:4479053-4479173 50 3.16e-05 TCTTGGGAAA CGACGACG CGAGTGAAAT chr3R:4387307-4387427 56 3.49e-05 GCTATTTCAT CGCCCGCG TAAAacgggc chr3R:12443986-12444106 44 3.93e-05 GCAGGTTCTT CGTCGTCG GCAATTTTTG chr2L:9949540-9949660 14 4.49e-05 ACAATCTGCA CGCCCTCG TACACCAAGC chr2L:15745486-15745606 110 5.66e-05 CGAATTTTTT CGACGTCG CAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGBCGWCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3242282-3242402 5.5e-06 84_[+4]_28 chrX:1617244-1617364 5.5e-06 40_[+4]_72 chr3R:26002331-26002451 5.5e-06 58_[+4]_54 chr2L:8351995-8352115 5.5e-06 40_[+4]_72 chr3L:9380091-9380211 8.8e-06 17_[+4]_95 chrX:687633-687753 1.4e-05 78_[+4]_34 chr3L:9694433-9694553 1.9e-05 78_[+4]_34 chr2L:5146113-5146233 2.4e-05 49_[+4]_63 chr2R:14984393-14984513 2.4e-05 2_[+4]_110 chr2R:9028861-9028981 3.2e-05 78_[+4]_34 chr3R:4479053-4479173 3.2e-05 49_[+4]_63 chr3R:4387307-4387427 3.5e-05 55_[+4]_57 chr3R:12443986-12444106 3.9e-05 43_[+4]_69 chr2L:9949540-9949660 4.5e-05 13_[+4]_99 chr2L:15745486-15745606 5.7e-05 109_[+4]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGBCGWCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGBCGWCG width=8 seqs=15 chr3L:3242282-3242402 ( 85) CGCCGACG 1 chrX:1617244-1617364 ( 41) CGGCGACG 1 chr3R:26002331-26002451 ( 59) CGGCGACG 1 chr2L:8351995-8352115 ( 41) CGGCGACG 1 chr3L:9380091-9380211 ( 18) CGCCGGCG 1 chrX:687633-687753 ( 79) CGGCGTCG 1 chr3L:9694433-9694553 ( 79) CGTCGACG 1 chr2L:5146113-5146233 ( 50) CGCCCACG 1 chr2R:14984393-14984513 ( 3) CGGCCACG 1 chr2R:9028861-9028981 ( 79) CGTCGGCG 1 chr3R:4479053-4479173 ( 50) CGACGACG 1 chr3R:4387307-4387427 ( 56) CGCCCGCG 1 chr3R:12443986-12444106 ( 44) CGTCGTCG 1 chr2L:9949540-9949660 ( 14) CGCCCTCG 1 chr2L:15745486-15745606 ( 110) CGACGTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGBCGWCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1534 E= 4.0e+003 -1055 238 -1055 -1055 -1055 -1055 242 -1055 -123 80 84 -62 -1055 238 -1055 -1055 -1055 48 197 -1055 77 -1055 10 -21 -1055 238 -1055 -1055 -1055 -1055 242 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGBCGWCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 4.0e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.133333 0.333333 0.333333 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 0.266667 0.733333 0.000000 0.533333 0.000000 0.200000 0.266667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGBCGWCG MEME-4 regular expression -------------------------------------------------------------------------------- CG[CGT]C[GC][ATG]CG -------------------------------------------------------------------------------- Time 25.77 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTDTT MEME-5 width = 8 sites = 77 llr = 560 E-value = 1.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTDTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::3:: pos.-specific C :::::::2 probability G ::1:23:1 matrix T aa9a84a8 bits 2.4 2.2 1.9 1.7 ** * * Relative 1.5 **** * Entropy 1.2 ***** * (10.5 bits) 1.0 ***** * 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTDTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:15027660-15027780 70 4.92e-05 TGTTTGTATC TTTTTGTT TTGTTAGAGT chr3R:9941025-9941145 101 4.92e-05 CTTTTGGTTC TTTTTGTT CGCTTTTTGT chr3R:22042524-22042644 61 4.92e-05 TTTAAATACT TTTTTGTT GTACTTGCTG chr2L:9698370-9698490 25 4.92e-05 CTTCATATTG TTTTTGTT CTCAGCGCTT chr2L:10264256-10264376 41 4.92e-05 AGATGTGGTC TTTTTGTT TGAACATGAT chr3L:1091145-1091265 62 4.92e-05 CATCTTCTGT TTTTTGTT ATTTTATTTA chr3L:22823446-22823566 71 4.92e-05 TTTGTGGCAA TTTTTGTT GTTGCTCTTG chrX:12736317-12736437 45 4.92e-05 TGCCAAGTTG TTTTTGTT GGCTGCTTTT chr2R:14140335-14140455 113 4.92e-05 Ctgtctttga tttttgtt chr2R:11384372-11384492 37 1.30e-04 ATTAACGGCC TTTTTTTT AATTATATCC chr2L:12493728-12493848 41 1.30e-04 GCCGAAGCTA tttttttt tatattttat chr2L:8239319-8239439 26 1.30e-04 TTTTGGGTGT TTTTTTTT TGTATAATTG chr3R:9534846-9534966 47 1.30e-04 TTTTCGTATT TTTTTTTT CGCTTTTTGT chr3R:10476148-10476268 39 1.30e-04 ATTGTGTATT TTTTTTTT TCATAAAATT chr2R:21194485-21194605 52 1.30e-04 GATACttttg tttttttt tttttttgtt chr3L:6249332-6249452 20 1.30e-04 AGCTCGTATG TTTTTTTT CACGATTTTC chr3R:15409468-15409588 106 1.30e-04 CACATTATTA TTTTTTTT CTTAATC chr3L:18632357-18632477 38 1.30e-04 TTTTTCAGTT TTTTTTTT CAGTTTTCAT chr3R:24575911-24576031 66 1.30e-04 TAGCTCGTTT TTTTTTTT TTGCTGATTT chr2L:11175488-11175608 70 1.30e-04 TTTTGTTTCA TTTTTTTT CCCCCTCTGT chrX:6343553-6343673 106 1.30e-04 CTCTCTTGTT TTTTTTTT TGTCGCT chrX:13635053-13635173 63 1.30e-04 ttatattgta tttttttt gttttTGCTG chr3L:8369092-8369212 38 1.30e-04 tgtgtgtttt tttttttt GGTTTGCCAA chr2R:11206748-11206868 43 1.30e-04 Atttttttca tttttttt ttatttattt chr3L:2833679-2833799 88 1.30e-04 tgttatgttt tttttttt tatgttCGCT chrX:11817083-11817203 5 1.30e-04 CTTC TTTTTTTT CTGTTGCGAC chr2L:21008829-21008949 38 1.30e-04 Attttttttt tttttttt GAAAGACAGT chr3L:64970-65090 61 1.30e-04 atttaattta tttttttt attttatACA chr3L:5852548-5852668 35 1.30e-04 tttcgttaac tttttttt gtgtttgttg chr3L:15547549-15547669 48 1.30e-04 ATGAAATCAG TTTTTTTT TTTATACAAT chr2R:15842746-15842866 9 2.13e-04 CTATGACA TTTTTATT ACTGGTATTT chr2L:21753739-21753859 65 2.13e-04 TCTCCCGCAA TTTTTATT GATCTAAAAT chr2L:7909322-7909442 57 2.13e-04 TAACTTTGGG TTTTTATT GATTTTAGCT chr3L:18828569-18828689 77 2.13e-04 TCGTTTGAGC TTTTTATT ATTTAATATT chr3L:9694433-9694553 39 2.13e-04 TGAGTAGAAG TTTTTATT ATAAATTTTT chr2R:7779680-7779800 59 2.13e-04 GCTTACGTTC TTTTTATT TTTATATTAA chr3L:3242282-3242402 70 2.13e-04 CTGCCTCACT TTTTTATT TTGGGGCCGC chr2L:11182947-11183067 15 2.13e-04 TCAGCTTCGA TTTTTATT TGTTTTGCTC chr3R:25651540-25651660 16 2.13e-04 TTCATAGATT TTTTTATT AAATTAGTTT chr3R:20772698-20772818 70 2.13e-04 ATCAAATTAA TTTTTATT TTGACTTACT chr3R:24278827-24278947 14 2.13e-04 GACAACTTTG TTTTTATT GAGCCGGTTC chr2L:15386796-15386916 86 2.43e-04 TATGAGAATT TTTTGGTT ATTTTAGGAA chr3L:8825721-8825841 32 2.43e-04 AGGGTTTTGG TTTTGGTT TCGGTTTCGG chr3R:4387307-4387427 18 2.43e-04 AAGTGTTTAT TTTTGGTT TTTCGATTAT chr3L:21026045-21026165 28 2.43e-04 TGCGACTATT TTTTGGTT TCGAAAAACA chrX:5904530-5904650 3 3.22e-04 TC TTTTTGTC TGTCTCTCTT chr2R:8601926-8602046 25 3.22e-04 AGGTTTTCAC TTTTGTTT TGTTCCATTT chr2R:14182834-14182954 55 3.22e-04 TGGACCTACA TTTTTGTC ACGCAGCGTA chr2L:2193141-2193261 40 3.22e-04 CATGCATTTA TTTTGTTT ATTTTTCATC chr2L:13878453-13878573 84 3.22e-04 AGCATTTCAG TTTTGTTT TTCCCTAGTC chr3R:16281416-16281536 1 3.73e-04 . TTTTTTTC GTTAAGTACT chr3R:21190858-21190978 110 3.73e-04 TTATTTTCGC TTTTTTTC CCC chr2L:10250100-10250220 64 3.73e-04 ATATCAATAA TTTTTTTC ATAACCGGCA chrX:13284304-13284424 83 3.73e-04 gttTTATATA TTTTTTTC TGGCATCATG chrX:19316046-19316166 7 3.73e-04 atttaa tttttttc tttttAATTC chr3R:11153960-11154080 24 4.53e-04 AAGCACACAA TTTTGATT GTGGAAAATC chrX:3437543-3437663 74 4.53e-04 AATACTCTTC TTTTTGTG TCATTATCAT chr3R:12717799-12717919 22 4.53e-04 ATACCAAGTG TTTTTGTG GTGATTATCG chr2L:19543258-19543378 110 4.53e-04 TACAAAACAT TTTTGATT TTA chr2L:700995-701115 23 4.53e-04 TAATAATACT TTTTGATT GCGCACTTGA chr2R:11453136-11453256 95 4.53e-04 GCGGATCGTG TTTTTGTG CGTGTTAATA chr2L:21018585-21018705 100 4.53e-04 TGAGAGTTCC TTTTGATT TGCTCAAGGA chr3R:7497489-7497609 75 5.53e-04 TAAGGTTAAT TTTTTATC AGCCCGCGAC chr2L:10002695-10002815 29 5.53e-04 CGGAACCGAC TTTTTTTG CACAGCTAGA chr3L:17962179-17962299 103 5.53e-04 TTCTTCATCT TTTTTATC GGCGCATATA chr3L:17569887-17570007 57 5.83e-04 ATTGTAGTAT TTGTTGTT GGTGTGAATG chr3R:9954790-9954910 105 5.83e-04 AACAAACAAC TTGTTGTT GCTGTTTT chr2R:10134819-10134939 76 5.83e-04 GCTGCGGTCT TTGTTGTT ATTGCGTCTG chr3R:17713019-17713139 109 5.83e-04 TACTTGGCCA Ttgttgtt gttg chr3R:17678698-17678818 85 5.83e-04 AATTTCATTG TTGTTGTT GCTCTGCTGA chr3R:5671046-5671166 100 6.33e-04 CTGCTGTTCT TTGTTTTT CTCTTTTCTG chr3L:8151838-8151958 76 6.51e-04 CGCTCGCTAA TTTTGGTC CGTCTGCGCC chr2R:9553422-9553542 34 7.32e-04 CGACCTCATA TTTTTATG GAACAAACAC chrX:19349274-19349394 65 7.32e-04 TAACCTAAGG TTTTTATG GAAAGTTATG chr2L:15745486-15745606 6 7.32e-04 CATTA TTTTGTTC TTCACTCGTT chr3L:11135937-11136057 18 7.32e-04 CCAACAAAAG TTTTGTTC CATGTGAAAA chr2L:3356839-3356959 112 7.32e-04 TTGTTCCTGA TTTTTATG C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTDTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15027660-15027780 4.9e-05 69_[+5]_43 chr3R:9941025-9941145 4.9e-05 100_[+5]_12 chr3R:22042524-22042644 4.9e-05 60_[+5]_52 chr2L:9698370-9698490 4.9e-05 24_[+5]_88 chr2L:10264256-10264376 4.9e-05 40_[+5]_72 chr3L:1091145-1091265 4.9e-05 61_[+5]_51 chr3L:22823446-22823566 4.9e-05 70_[+5]_42 chrX:12736317-12736437 4.9e-05 44_[+5]_68 chr2R:14140335-14140455 4.9e-05 112_[+5] chr2R:11384372-11384492 0.00013 36_[+5]_76 chr2L:12493728-12493848 0.00013 40_[+5]_72 chr2L:8239319-8239439 0.00013 25_[+5]_87 chr3R:9534846-9534966 0.00013 46_[+5]_66 chr3R:10476148-10476268 0.00013 38_[+5]_74 chr2R:21194485-21194605 0.00013 51_[+5]_61 chr3L:6249332-6249452 0.00013 19_[+5]_93 chr3R:15409468-15409588 0.00013 105_[+5]_7 chr3L:18632357-18632477 0.00013 37_[+5]_75 chr3R:24575911-24576031 0.00013 65_[+5]_47 chr2L:11175488-11175608 0.00013 69_[+5]_43 chrX:6343553-6343673 0.00013 105_[+5]_7 chrX:13635053-13635173 0.00013 62_[+5]_50 chr3L:8369092-8369212 0.00013 37_[+5]_75 chr2R:11206748-11206868 0.00013 42_[+5]_70 chr3L:2833679-2833799 0.00013 87_[+5]_25 chrX:11817083-11817203 0.00013 4_[+5]_108 chr2L:21008829-21008949 0.00013 37_[+5]_75 chr3L:64970-65090 0.00013 60_[+5]_52 chr3L:5852548-5852668 0.00013 34_[+5]_78 chr3L:15547549-15547669 0.00013 47_[+5]_65 chr2R:15842746-15842866 0.00021 8_[+5]_104 chr2L:21753739-21753859 0.00021 64_[+5]_48 chr2L:7909322-7909442 0.00021 56_[+5]_56 chr3L:18828569-18828689 0.00021 76_[+5]_36 chr3L:9694433-9694553 0.00021 38_[+5]_74 chr2R:7779680-7779800 0.00021 58_[+5]_54 chr3L:3242282-3242402 0.00021 69_[+5]_43 chr2L:11182947-11183067 0.00021 14_[+5]_98 chr3R:25651540-25651660 0.00021 15_[+5]_97 chr3R:20772698-20772818 0.00021 69_[+5]_43 chr3R:24278827-24278947 0.00021 13_[+5]_99 chr2L:15386796-15386916 0.00024 85_[+5]_27 chr3L:8825721-8825841 0.00024 31_[+5]_81 chr3R:4387307-4387427 0.00024 17_[+5]_95 chr3L:21026045-21026165 0.00024 27_[+5]_85 chrX:5904530-5904650 0.00032 2_[+5]_110 chr2R:8601926-8602046 0.00032 24_[+5]_88 chr2R:14182834-14182954 0.00032 54_[+5]_58 chr2L:2193141-2193261 0.00032 39_[+5]_73 chr2L:13878453-13878573 0.00032 83_[+5]_29 chr3R:16281416-16281536 0.00037 [+5]_112 chr3R:21190858-21190978 0.00037 109_[+5]_3 chr2L:10250100-10250220 0.00037 63_[+5]_49 chrX:13284304-13284424 0.00037 82_[+5]_30 chrX:19316046-19316166 0.00037 6_[+5]_106 chr3R:11153960-11154080 0.00045 23_[+5]_89 chrX:3437543-3437663 0.00045 73_[+5]_39 chr3R:12717799-12717919 0.00045 21_[+5]_91 chr2L:19543258-19543378 0.00045 109_[+5]_3 chr2L:700995-701115 0.00045 22_[+5]_90 chr2R:11453136-11453256 0.00045 94_[+5]_18 chr2L:21018585-21018705 0.00045 99_[+5]_13 chr3R:7497489-7497609 0.00055 74_[+5]_38 chr2L:10002695-10002815 0.00055 28_[+5]_84 chr3L:17962179-17962299 0.00055 102_[+5]_10 chr3L:17569887-17570007 0.00058 56_[+5]_56 chr3R:9954790-9954910 0.00058 104_[+5]_8 chr2R:10134819-10134939 0.00058 75_[+5]_37 chr3R:17713019-17713139 0.00058 108_[+5]_4 chr3R:17678698-17678818 0.00058 84_[+5]_28 chr3R:5671046-5671166 0.00063 99_[+5]_13 chr3L:8151838-8151958 0.00065 75_[+5]_37 chr2R:9553422-9553542 0.00073 33_[+5]_79 chrX:19349274-19349394 0.00073 64_[+5]_48 chr2L:15745486-15745606 0.00073 5_[+5]_107 chr3L:11135937-11136057 0.00073 17_[+5]_95 chr2L:3356839-3356959 0.00073 111_[+5]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTDTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTDTT width=8 seqs=77 chr2R:15027660-15027780 ( 70) TTTTTGTT 1 chr3R:9941025-9941145 ( 101) TTTTTGTT 1 chr3R:22042524-22042644 ( 61) TTTTTGTT 1 chr2L:9698370-9698490 ( 25) TTTTTGTT 1 chr2L:10264256-10264376 ( 41) TTTTTGTT 1 chr3L:1091145-1091265 ( 62) TTTTTGTT 1 chr3L:22823446-22823566 ( 71) TTTTTGTT 1 chrX:12736317-12736437 ( 45) TTTTTGTT 1 chr2R:14140335-14140455 ( 113) TTTTTGTT 1 chr2R:11384372-11384492 ( 37) TTTTTTTT 1 chr2L:12493728-12493848 ( 41) TTTTTTTT 1 chr2L:8239319-8239439 ( 26) TTTTTTTT 1 chr3R:9534846-9534966 ( 47) TTTTTTTT 1 chr3R:10476148-10476268 ( 39) TTTTTTTT 1 chr2R:21194485-21194605 ( 52) TTTTTTTT 1 chr3L:6249332-6249452 ( 20) TTTTTTTT 1 chr3R:15409468-15409588 ( 106) TTTTTTTT 1 chr3L:18632357-18632477 ( 38) TTTTTTTT 1 chr3R:24575911-24576031 ( 66) TTTTTTTT 1 chr2L:11175488-11175608 ( 70) TTTTTTTT 1 chrX:6343553-6343673 ( 106) TTTTTTTT 1 chrX:13635053-13635173 ( 63) TTTTTTTT 1 chr3L:8369092-8369212 ( 38) TTTTTTTT 1 chr2R:11206748-11206868 ( 43) TTTTTTTT 1 chr3L:2833679-2833799 ( 88) TTTTTTTT 1 chrX:11817083-11817203 ( 5) TTTTTTTT 1 chr2L:21008829-21008949 ( 38) TTTTTTTT 1 chr3L:64970-65090 ( 61) TTTTTTTT 1 chr3L:5852548-5852668 ( 35) TTTTTTTT 1 chr3L:15547549-15547669 ( 48) TTTTTTTT 1 chr2R:15842746-15842866 ( 9) TTTTTATT 1 chr2L:21753739-21753859 ( 65) TTTTTATT 1 chr2L:7909322-7909442 ( 57) TTTTTATT 1 chr3L:18828569-18828689 ( 77) TTTTTATT 1 chr3L:9694433-9694553 ( 39) TTTTTATT 1 chr2R:7779680-7779800 ( 59) TTTTTATT 1 chr3L:3242282-3242402 ( 70) TTTTTATT 1 chr2L:11182947-11183067 ( 15) TTTTTATT 1 chr3R:25651540-25651660 ( 16) TTTTTATT 1 chr3R:20772698-20772818 ( 70) TTTTTATT 1 chr3R:24278827-24278947 ( 14) TTTTTATT 1 chr2L:15386796-15386916 ( 86) TTTTGGTT 1 chr3L:8825721-8825841 ( 32) TTTTGGTT 1 chr3R:4387307-4387427 ( 18) TTTTGGTT 1 chr3L:21026045-21026165 ( 28) TTTTGGTT 1 chrX:5904530-5904650 ( 3) TTTTTGTC 1 chr2R:8601926-8602046 ( 25) TTTTGTTT 1 chr2R:14182834-14182954 ( 55) TTTTTGTC 1 chr2L:2193141-2193261 ( 40) TTTTGTTT 1 chr2L:13878453-13878573 ( 84) TTTTGTTT 1 chr3R:16281416-16281536 ( 1) TTTTTTTC 1 chr3R:21190858-21190978 ( 110) TTTTTTTC 1 chr2L:10250100-10250220 ( 64) TTTTTTTC 1 chrX:13284304-13284424 ( 83) TTTTTTTC 1 chrX:19316046-19316166 ( 7) TTTTTTTC 1 chr3R:11153960-11154080 ( 24) TTTTGATT 1 chrX:3437543-3437663 ( 74) TTTTTGTG 1 chr3R:12717799-12717919 ( 22) TTTTTGTG 1 chr2L:19543258-19543378 ( 110) TTTTGATT 1 chr2L:700995-701115 ( 23) TTTTGATT 1 chr2R:11453136-11453256 ( 95) TTTTTGTG 1 chr2L:21018585-21018705 ( 100) TTTTGATT 1 chr3R:7497489-7497609 ( 75) TTTTTATC 1 chr2L:10002695-10002815 ( 29) TTTTTTTG 1 chr3L:17962179-17962299 ( 103) TTTTTATC 1 chr3L:17569887-17570007 ( 57) TTGTTGTT 1 chr3R:9954790-9954910 ( 105) TTGTTGTT 1 chr2R:10134819-10134939 ( 76) TTGTTGTT 1 chr3R:17713019-17713139 ( 109) TTGTTGTT 1 chr3R:17678698-17678818 ( 85) TTGTTGTT 1 chr3R:5671046-5671166 ( 100) TTGTTTTT 1 chr3L:8151838-8151958 ( 76) TTTTGGTC 1 chr2R:9553422-9553542 ( 34) TTTTTATG 1 chrX:19349274-19349394 ( 65) TTTTTATG 1 chr2L:15745486-15745606 ( 6) TTTTGTTC 1 chr3L:11135937-11136057 ( 18) TTTTGTTC 1 chr2L:3356839-3356959 ( 112) TTTTTATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTDTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3386 E= 1.4e+001 -1291 -1291 -1291 170 -1291 -1291 -1291 170 -1291 -1291 -126 158 -1291 -1291 -1291 170 -1291 -1291 -4 141 -27 -1291 74 48 -1291 -1291 -1291 170 -1291 -30 -104 129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTDTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 77 E= 1.4e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.077922 0.922078 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.181818 0.818182 0.259740 0.000000 0.311688 0.428571 0.000000 0.000000 0.000000 1.000000 0.000000 0.155844 0.090909 0.753247 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTDTT MEME-5 regular expression -------------------------------------------------------------------------------- TTTTT[TGA]TT -------------------------------------------------------------------------------- Time 31.78 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21374079-21374199 3.52e-01 120 chr2L:8351995-8352115 1.09e-02 40_[+4(5.51e-06)]_72 chr2L:1989365-1989485 9.15e-01 120 chr2L:4070105-4070225 5.54e-01 120 chr3R:24278827-24278947 4.74e-02 120 chr3R:4479053-4479173 4.22e-03 49_[+4(3.16e-05)]_63 chr2L:14572259-14572379 3.71e-02 110_[+1(8.15e-06)]_2 chrX:19316046-19316166 1.15e-01 120 chrX:18777398-18777518 1.85e-01 120 chr2L:623681-623801 5.51e-01 120 chr3R:19310352-19310472 2.56e-02 101_[+1(7.59e-05)]_11 chr3L:21026045-21026165 2.39e-03 120 chr2L:13878453-13878573 4.19e-01 120 chr3R:23189435-23189555 6.51e-01 120 chr2L:3356839-3356959 3.00e-01 120 chr3R:4387307-4387427 4.10e-03 55_[+4(3.49e-05)]_57 chr2L:5247354-5247474 9.43e-01 120 chr2R:21553786-21553906 1.29e-02 4_[+1(3.07e-05)]_108 chr2R:22644710-22644830 2.77e-02 18_[+2(2.16e-05)]_94 chr3L:17492896-17493016 3.09e-03 8_[+1(1.88e-05)]_104 chrX:3772871-3772991 2.36e-02 61_[+1(7.59e-05)]_51 chr2L:9949540-9949660 1.42e-01 13_[+4(4.49e-05)]_99 chr2L:21018585-21018705 2.43e-03 16_[+1(7.59e-05)]_96 chr3R:20772698-20772818 1.10e-01 120 chr3L:8151838-8151958 3.91e-02 120 chr3R:30274909-30275029 9.92e-03 25_[+2(5.69e-05)]_87 chr3R:17678698-17678818 9.28e-03 33_[+3(4.42e-05)]_79 chr3L:15547549-15547669 1.78e-02 120 chr2R:11453136-11453256 2.60e-01 120 chr3L:18239679-18239799 2.11e-01 9_[+2(5.69e-05)]_54_[+2(5.69e-05)]_\ 41 chr3R:12974648-12974768 3.06e-01 120 chr2R:14140335-14140455 2.30e-04 85_[+2(5.69e-05)]_19_[+5(4.92e-05)] chr3L:9380091-9380211 1.77e-06 17_[+4(8.79e-06)]_11_[+2(2.16e-05)]_\ 1_[+3(4.28e-06)]_[+3(4.28e-06)]_[+3(1.28e-05)]_51 chr3L:5852548-5852668 2.31e-01 120 chr3L:64970-65090 5.03e-02 120 chr2R:17834137-17834257 1.99e-01 120 chr3R:9968349-9968469 9.65e-01 120 chr3R:11565083-11565203 3.96e-01 120 chr3L:22179796-22179916 6.83e-03 83_[+3(1.28e-05)]_29 chr3R:19065788-19065908 2.51e-01 120 chr2R:9843629-9843749 8.54e-01 120 chrX:687633-687753 8.84e-04 56_[+2(2.16e-05)]_14_[+4(1.42e-05)]_\ 6_[+4(1.87e-05)]_20 chr2R:9028861-9028981 9.73e-03 78_[+4(3.16e-05)]_34 chr3L:3425740-3425860 8.74e-01 120 chr3L:17962179-17962299 1.65e-01 120 chrX:13284304-13284424 1.72e-03 3_[+2(2.16e-05)]_109 chr2L:7033763-7033883 2.98e-01 120 chr3R:17061898-17062018 4.74e-04 31_[+1(2.31e-05)]_18_[+3(8.08e-05)]_\ 55 chr2R:23983057-23983177 5.30e-01 120 chr3L:21389921-21390041 6.79e-01 120 chr3L:8825721-8825841 2.12e-01 120 chr2L:21008829-21008949 3.04e-01 120 chrX:9075481-9075601 2.08e-01 120 chr3R:12960518-12960638 2.73e-02 120 chr2R:13918690-13918810 4.95e-01 120 chr3R:22635830-22635950 6.07e-01 120 chrX:3768365-3768485 7.71e-01 120 chr3L:18800683-18800803 2.25e-01 120 chr3L:21256240-21256360 9.95e-01 120 chr2R:12368402-12368522 7.31e-01 120 chrX:12736317-12736437 3.41e-04 44_[+5(4.92e-05)]_50_[+2(2.16e-05)]_\ 10 chrX:1826810-1826930 2.31e-01 120 chr3L:22823446-22823566 1.23e-01 70_[+5(4.92e-05)]_42 chr3L:6962113-6962233 9.53e-01 120 chr2L:700995-701115 3.01e-01 120 chr2L:2193141-2193261 3.08e-01 120 chr2L:4937163-4937283 7.06e-01 120 chr3R:7523770-7523890 9.71e-04 20_[+1(8.15e-06)]_92 chr3L:10775922-10776042 1.48e-01 38_[+1(4.25e-05)]_74 chr3L:3251907-3252027 8.65e-01 120 chrX:11817083-11817203 1.62e-01 120 chr2R:14984393-14984513 8.08e-03 2_[+4(2.43e-05)]_110 chr3L:1091145-1091265 2.86e-04 61_[+5(4.92e-05)]_25_[+3(2.57e-05)]_\ 18 chr2R:14182834-14182954 2.03e-01 120 chr3R:20534747-20534867 6.08e-02 120 chr2L:2758365-2758485 9.87e-01 120 chr3R:12370843-12370963 9.38e-01 120 chr3L:7942507-7942627 3.27e-01 120 chr3L:1088239-1088359 7.65e-01 120 chr3R:4975833-4975953 4.03e-01 120 chr2R:9551816-9551936 8.27e-04 19_[+1(8.15e-06)]_15_[+3(5.58e-05)]_\ 70 chr2R:10125568-10125688 4.47e-02 120 chr2R:21047916-21048036 1.43e-01 17_[+1(8.73e-05)]_95 chr2L:12459606-12459726 7.77e-01 120 chr2R:23972207-23972327 8.08e-01 120 chr2R:17093527-17093647 8.89e-01 120 chr2R:9148461-9148581 1.64e-01 110_[+1(2.15e-05)]_2 chr3L:2833679-2833799 2.82e-02 120 chr3L:1090339-1090459 1.29e-01 120 chr2L:12113142-12113262 5.96e-01 120 chr2L:15368507-15368627 2.01e-01 120 chr2R:11206748-11206868 7.26e-03 100_[+1(8.15e-06)]_12 chr3R:29096676-29096796 2.07e-01 120 chr3L:16048778-16048898 6.63e-01 120 chr3L:8369092-8369212 2.67e-01 120 chr2R:24046192-24046312 6.03e-01 120 chr3R:26002331-26002451 1.03e-02 58_[+4(5.51e-06)]_54 chr3L:13074372-13074492 1.89e-01 120 chr3L:8448368-8448488 6.57e-02 120 chr2R:22840120-22840240 6.07e-01 120 chr3R:25651540-25651660 2.71e-01 120 chr2L:2365896-2366016 2.52e-01 78_[+1(5.73e-05)]_34 chr3R:25659004-25659124 7.63e-01 120 chr3L:16042767-16042887 1.60e-02 75_[+3(4.42e-05)]_37 chr3L:11492319-11492439 2.34e-01 120 chr2L:10250100-10250220 4.13e-01 120 chrX:13635053-13635173 2.14e-04 16_[+3(4.28e-06)]_41_[+5(4.92e-05)]_\ 22_[+5(4.92e-05)]_17 chr3L:8997640-8997760 4.40e-01 120 chr2L:10002695-10002815 4.10e-01 120 chr3R:8642471-8642591 4.18e-01 120 chr3L:20933845-20933965 7.52e-02 52_[+3(4.42e-05)]_60 chr3R:7090233-7090353 8.75e-01 120 chr2L:18564075-18564195 3.58e-03 120 chr3R:19064200-19064320 2.89e-02 120 chrX:6343553-6343673 3.88e-01 120 chr2L:11175488-11175608 4.60e-03 7_[+3(4.42e-05)]_105 chr2L:5253691-5253811 9.91e-04 61_[+1(9.92e-05)]_2_[+3(8.44e-06)]_\ 41 chr3L:9056776-9056896 4.32e-01 120 chr3L:16177233-16177353 7.49e-01 120 chr2L:11182947-11183067 1.70e-01 120 chr2L:8095386-8095506 1.19e-02 43_[+3(4.28e-06)]_69 chr2R:8601926-8602046 1.40e-01 120 chr3L:2805256-2805376 2.81e-01 120 chr2L:13837867-13837987 6.18e-01 120 chr2R:17020130-17020250 2.08e-02 62_[+2(5.69e-05)]_50 chr2R:6125584-6125704 6.86e-01 120 chr3R:17713019-17713139 1.91e-02 57_[+2(2.16e-05)]_55 chrX:12895495-12895615 8.36e-04 63_[+2(2.16e-05)]_49 chrX:1577259-1577379 1.88e-01 75_[+2(2.16e-05)]_37 chr3R:24575911-24576031 3.19e-03 112_[+2(2.16e-05)] chr2L:10264256-10264376 2.15e-01 40_[+5(4.92e-05)]_72 chr2R:7626384-7626504 6.27e-02 120 chr2R:18351174-18351294 7.33e-01 120 chr3R:5083103-5083223 8.58e-01 120 chr2L:14506948-14507068 3.53e-01 120 chr3L:18632357-18632477 1.18e-02 120 chr3R:31610125-31610245 4.57e-01 120 chr3L:1325477-1325597 9.81e-01 120 chr3R:15409468-15409588 5.07e-02 120 chr2R:22537434-22537554 4.55e-02 120 chr2R:14433376-14433496 1.93e-03 16_[+1(8.73e-05)]_96 chr2L:9948417-9948537 4.24e-02 120 chr2L:5242550-5242670 6.64e-01 120 chr3R:21190858-21190978 1.15e-01 120 chr3L:6249332-6249452 7.34e-02 120 chrX:1617244-1617364 4.06e-03 19_[+4(8.79e-06)]_13_[+4(5.51e-06)]_\ 72 chr2L:9237631-9237751 4.73e-02 120 chr3R:23191272-23191392 5.07e-01 120 chr3L:3242282-3242402 1.79e-05 84_[+4(5.51e-06)]_28 chr3L:19900527-19900647 6.41e-02 111_[+2(2.16e-05)]_1 chr3R:7497489-7497609 4.47e-03 27_[+1(1.88e-05)]_85 chr2L:182904-183024 8.64e-01 120 chr2L:9698370-9698490 2.56e-02 24_[+5(4.92e-05)]_88 chr2R:7628587-7628707 9.92e-03 20_[+1(8.15e-06)]_92 chrX:16647886-16648006 6.22e-02 69_[+2(5.69e-05)]_43 chrX:9062777-9062897 6.32e-01 120 chr2L:2198052-2198172 3.20e-02 120 chr3L:12409455-12409575 5.93e-01 120 chr3L:14241102-14241222 4.45e-01 120 chr3L:17949623-17949743 2.65e-01 120 chr2L:8705072-8705192 6.24e-01 120 chr2L:3648259-3648379 4.37e-01 120 chr3L:11135937-11136057 9.65e-03 8_[+2(5.69e-05)]_104 chr2R:12946207-12946327 1.47e-01 120 chr2R:11633373-11633493 5.31e-02 87_[+2(5.69e-05)]_25 chr2L:18468795-18468915 7.11e-01 120 chr2R:21194485-21194605 2.16e-01 61_[+5(4.92e-05)]_51 chr3L:2838244-2838364 8.35e-01 120 chr2R:6144355-6144475 7.73e-01 120 chr3R:22042524-22042644 7.56e-03 60_[+5(4.92e-05)]_52 chr2R:7779680-7779800 5.29e-02 120 chr2R:10134819-10134939 2.67e-01 120 chr2L:5307048-5307168 6.73e-01 120 chr2L:19543258-19543378 5.99e-01 120 chrX:7317606-7317726 7.40e-01 120 chr2L:15745486-15745606 9.81e-02 109_[+4(5.66e-05)]_3 chr3L:9357897-9358017 6.38e-02 60_[+2(2.16e-05)]_52 chr3L:11382184-11382304 5.75e-02 5_[+1(5.73e-05)]_107 chr3L:15511918-15512038 5.03e-01 120 chrX:4612508-4612628 1.50e-01 120 chr3L:9694433-9694553 5.55e-05 78_[+4(1.87e-05)]_34 chr2L:12448353-12448473 4.35e-01 120 chrX:5904530-5904650 1.09e-03 30_[+1(2.63e-05)]_82 chr3R:31943883-31944003 4.05e-03 54_[+3(8.44e-06)]_58 chr3L:17506064-17506184 4.99e-01 120 chr3R:5660540-5660660 2.62e-01 120 chr3R:24564925-24565045 7.35e-01 120 chr3R:29283227-29283347 2.64e-01 120 chr2R:6708730-6708850 3.59e-02 120 chr3R:21024259-21024379 2.26e-01 120 chr3L:3435902-3436022 9.77e-01 120 chr3R:12717799-12717919 1.53e-01 120 chr3R:10476148-10476268 6.62e-02 120 chr3R:7963655-7963775 1.72e-01 120 chr3L:21972517-21972637 7.75e-01 120 chr2R:12777284-12777404 2.75e-03 60_[+3(5.13e-05)]_3_[+1(2.63e-05)]_\ 41 chr3R:9534846-9534966 7.74e-02 120 chr2L:8239319-8239439 6.79e-02 120 chr2R:17452471-17452591 4.77e-02 68_[+1(7.59e-05)]_44 chr2L:2228618-2228738 7.93e-01 120 chr3R:9954790-9954910 6.06e-02 120 chrX:3437543-3437663 1.87e-01 120 chr2L:12493728-12493848 2.02e-03 26_[+1(8.73e-05)]_86 chr2R:17452259-17452379 1.10e-01 46_[+3(8.08e-05)]_66 chr3R:5671046-5671166 7.77e-02 120 chr3L:8825095-8825215 6.28e-02 24_[+3(5.58e-05)]_88 chrX:19349274-19349394 3.21e-01 120 chr2R:24836865-24836985 4.81e-01 120 chr2L:9698597-9698717 8.85e-01 120 chr3R:9941025-9941145 5.05e-04 28_[+3(7.38e-05)]_64_[+5(4.92e-05)]_\ 12 chr2R:10100114-10100234 6.45e-01 120 chr2L:15386796-15386916 7.99e-02 120 chr3R:24603834-24603954 3.31e-01 120 chr3L:18828569-18828689 1.34e-01 120 chr2R:10026123-10026243 7.63e-01 120 chr2L:8126909-8127029 8.06e-01 120 chr3L:19557842-19557962 7.43e-05 35_[+3(4.42e-05)]_22_[+2(5.69e-05)]_\ 10_[+1(4.25e-05)]_29 chr3L:17569887-17570007 5.67e-01 120 chr3L:7952001-7952121 4.62e-01 120 chr3R:4883978-4884098 7.41e-01 120 chr2R:23981000-23981120 2.40e-02 59_[+2(5.69e-05)]_53 chr3R:11153960-11154080 2.60e-01 120 chr3L:16178546-16178666 1.20e-02 102_[+2(2.16e-05)]_10 chr2L:20083589-20083709 7.96e-01 120 chr3R:28599972-28600092 9.49e-02 120 chr3R:13684780-13684900 6.58e-01 120 chr3R:12443986-12444106 2.79e-02 43_[+4(3.93e-05)]_69 chr3R:31381719-31381839 1.88e-02 38_[+2(5.69e-05)]_74 chr2R:17436245-17436365 5.70e-01 120 chr2L:7334293-7334413 9.28e-02 120 chr2R:12679804-12679924 5.43e-01 120 chr2L:5146113-5146233 5.64e-02 49_[+4(2.43e-05)]_63 chr2L:7909322-7909442 1.13e-01 120 chrX:1664755-1664875 1.20e-01 120 chr3R:17825814-17825934 7.98e-03 1_[+3(2.14e-05)]_61_[+1(8.73e-05)]_\ 42 chr3L:225162-225282 1.01e-01 120 chr2L:21753739-21753859 4.00e-01 120 chr2L:12720046-12720166 3.17e-03 120 chr3R:23337379-23337499 9.99e-01 120 chr3L:3251195-3251315 6.87e-03 81_[+3(4.28e-06)]_31 chr2L:5294862-5294982 5.69e-02 120 chr3R:16281416-16281536 9.79e-02 120 chr2R:9553422-9553542 1.28e-02 120 chr2R:22666830-22666950 8.58e-01 120 chr2L:13845272-13845392 8.31e-01 120 chr2R:15842746-15842866 2.56e-01 120 chr3L:3096179-3096299 3.25e-02 82_[+1(3.07e-05)]_30 chr2R:15027660-15027780 8.92e-02 69_[+5(4.92e-05)]_43 chr2R:11384372-11384492 3.28e-02 120 chr2R:23942407-23942527 5.56e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************