******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/cnc.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:15741020-15741140 1.0000 120 chr3R:5789691-5789811 1.0000 120 chr2R:12198522-12198642 1.0000 120 chr3L:22070610-22070730 1.0000 120 chr2L:16857270-16857390 1.0000 120 chr3R:27945496-27945616 1.0000 120 chrX:2176179-2176299 1.0000 120 chrX:8114052-8114172 1.0000 120 chr3R:7490001-7490121 1.0000 120 chr3R:29503097-29503217 1.0000 120 chr2L:9789910-9790030 1.0000 120 chrX:6341762-6341882 1.0000 120 chr2R:23610979-23611099 1.0000 120 chr2L:8696779-8696899 1.0000 120 chr2L:10513994-10514114 1.0000 120 chr2R:14246102-14246222 1.0000 120 chrX:1894006-1894126 1.0000 120 chrX:11859296-11859416 1.0000 120 chrX:16964007-16964127 1.0000 120 chr2L:6347015-6347135 1.0000 120 chr3R:14365503-14365623 1.0000 120 chr3L:12258359-12258479 1.0000 120 chrX:6276141-6276261 1.0000 120 chrX:7925805-7925925 1.0000 120 chrX:4361636-4361756 1.0000 120 chr3R:4685972-4686092 1.0000 120 chr3L:15513897-15514017 1.0000 120 chr2R:13540730-13540850 1.0000 120 chr2L:4895038-4895158 1.0000 120 chr2R:22479211-22479331 1.0000 120 chr2L:7990855-7990975 1.0000 120 chr3R:16620550-16620670 1.0000 120 chr2R:13588944-13589064 1.0000 120 chr2R:9126329-9126449 1.0000 120 chr2R:18629509-18629629 1.0000 120 chr3L:12406215-12406335 1.0000 120 chr3R:9437344-9437464 1.0000 120 chr3L:6754889-6755009 1.0000 120 chr3L:3773473-3773593 1.0000 120 chr2R:17018922-17019042 1.0000 120 chr3L:9500871-9500991 1.0000 120 chr3L:5924380-5924500 1.0000 120 chr3R:14301675-14301795 1.0000 120 chr3R:5680208-5680328 1.0000 120 chr2R:22571495-22571615 1.0000 120 chr2L:3453328-3453448 1.0000 120 chr2R:24069508-24069628 1.0000 120 chr3R:23725506-23725626 1.0000 120 chr2L:12376080-12376200 1.0000 120 chrX:10855352-10855472 1.0000 120 chr2R:9208091-9208211 1.0000 120 chr3R:30097001-30097121 1.0000 120 chr2L:20422620-20422740 1.0000 120 chrX:19272885-19273005 1.0000 120 chr3L:1774799-1774919 1.0000 120 chr3R:24117542-24117662 1.0000 120 chrX:11925071-11925191 1.0000 120 chr2L:7441672-7441792 1.0000 120 chr3R:29769173-29769293 1.0000 120 chr2R:7534267-7534387 1.0000 120 chr2R:8714743-8714863 1.0000 120 chr2L:6340381-6340501 1.0000 120 chr3R:26229482-26229602 1.0000 120 chrX:3445987-3446107 1.0000 120 chr2L:10471413-10471533 1.0000 120 chr3R:23732635-23732755 1.0000 120 chr2L:4419670-4419790 1.0000 120 chr2L:854688-854808 1.0000 120 chr2R:23977894-23978014 1.0000 120 chr2L:21315812-21315932 1.0000 120 chr3R:29797304-29797424 1.0000 120 chr3R:15353352-15353472 1.0000 120 chr3R:24872507-24872627 1.0000 120 chr2R:14884493-14884613 1.0000 120 chrX:16287662-16287782 1.0000 120 chr3R:24080419-24080539 1.0000 120 chr2R:24956675-24956795 1.0000 120 chr2L:104928-105048 1.0000 120 chr3R:17077622-17077742 1.0000 120 chr3R:9336452-9336572 1.0000 120 chr2R:18805859-18805979 1.0000 120 chr3R:13656603-13656723 1.0000 120 chr3L:4131363-4131483 1.0000 120 chr2L:15038478-15038598 1.0000 120 chr3R:27742568-27742688 1.0000 120 chr2R:14881776-14881896 1.0000 120 chr3R:14737103-14737223 1.0000 120 chrX:15730671-15730791 1.0000 120 chr3R:9957373-9957493 1.0000 120 chr3L:16665676-16665796 1.0000 120 chr2L:20878208-20878328 1.0000 120 chr2R:6173145-6173265 1.0000 120 chr3R:21171388-21171508 1.0000 120 chr2L:16528033-16528153 1.0000 120 chr2L:16850604-16850724 1.0000 120 chr3L:22474125-22474245 1.0000 120 chrX:648153-648273 1.0000 120 chr2L:3620880-3621000 1.0000 120 chrX:19754841-19754961 1.0000 120 chr2L:19053243-19053363 1.0000 120 chr3L:19088512-19088632 1.0000 120 chr2R:7253187-7253307 1.0000 120 chr2L:17447999-17448119 1.0000 120 chr2R:12334001-12334121 1.0000 120 chr3R:24260863-24260983 1.0000 120 chr3L:17623096-17623216 1.0000 120 chr2R:22310148-22310268 1.0000 120 chr3L:9339733-9339853 1.0000 120 chr2R:16111293-16111413 1.0000 120 chr3R:19082656-19082776 1.0000 120 chr2R:22667279-22667399 1.0000 120 chr3L:8680189-8680309 1.0000 120 chr3L:9712210-9712330 1.0000 120 chrX:21364324-21364444 1.0000 120 chr2R:8153959-8154079 1.0000 120 chr2R:17682459-17682579 1.0000 120 chr2L:6224671-6224791 1.0000 120 chr2L:16885737-16885857 1.0000 120 chr2L:1720606-1720726 1.0000 120 chrX:11134531-11134651 1.0000 120 chr2R:17708189-17708309 1.0000 120 chr2L:16882484-16882604 1.0000 120 chr3R:7909194-7909314 1.0000 120 chr3L:2810372-2810492 1.0000 120 chr4:879854-879974 1.0000 120 chr3R:6390169-6390289 1.0000 120 chr3L:15513383-15513503 1.0000 120 chr2L:7440435-7440555 1.0000 120 chr2R:19294440-19294560 1.0000 120 chr3R:12675634-12675754 1.0000 120 chr3L:16158559-16158679 1.0000 120 chr2L:9705145-9705265 1.0000 120 chrX:8109308-8109428 1.0000 120 chr3L:15515276-15515396 1.0000 120 chr2L:10239714-10239834 1.0000 120 chr3R:19902794-19902914 1.0000 120 chr2R:11188230-11188350 1.0000 120 chr2R:19307161-19307281 1.0000 120 chr3R:16353819-16353939 1.0000 120 chr2R:22591754-22591874 1.0000 120 chr2R:18390946-18391066 1.0000 120 chr2L:74117-74237 1.0000 120 chr3R:19067354-19067474 1.0000 120 chr3L:19907864-19907984 1.0000 120 chr2L:7048316-7048436 1.0000 120 chr3R:15975068-15975188 1.0000 120 chr2R:6974265-6974385 1.0000 120 chrX:13320196-13320316 1.0000 120 chr2L:7829739-7829859 1.0000 120 chr2R:20655222-20655342 1.0000 120 chr3R:8278893-8279013 1.0000 120 chr3R:25320121-25320241 1.0000 120 chrX:3865463-3865583 1.0000 120 chr3L:5367276-5367396 1.0000 120 chr2L:8704095-8704215 1.0000 120 chr2R:7713500-7713620 1.0000 120 chr3R:12370424-12370544 1.0000 120 chr2L:7215347-7215467 1.0000 120 chr3R:23061733-23061853 1.0000 120 chr3R:31461379-31461499 1.0000 120 chr2R:13539182-13539302 1.0000 120 chr3R:14294766-14294886 1.0000 120 chrX:6603539-6603659 1.0000 120 chr3R:11128366-11128486 1.0000 120 chr2L:5045848-5045968 1.0000 120 chr2R:13158091-13158211 1.0000 120 chr2R:6781514-6781634 1.0000 120 chr3L:5766652-5766772 1.0000 120 chr2L:6786535-6786655 1.0000 120 chr3R:14365979-14366099 1.0000 120 chr3L:1518262-1518382 1.0000 120 chr2L:8704333-8704453 1.0000 120 chr3R:23679186-23679306 1.0000 120 chr3R:21876705-21876825 1.0000 120 chr2R:18770858-18770978 1.0000 120 chr3L:4229004-4229124 1.0000 120 chr3R:24860555-24860675 1.0000 120 chr2R:16833765-16833885 1.0000 120 chr2L:4898150-4898270 1.0000 120 chr3L:16800785-16800905 1.0000 120 chr3R:15835006-15835126 1.0000 120 chrX:2070173-2070293 1.0000 120 chr3L:9339933-9340053 1.0000 120 chr3R:24573225-24573345 1.0000 120 chr3L:16798862-16798982 1.0000 120 chr3R:25287132-25287252 1.0000 120 chr3R:17076423-17076543 1.0000 120 chr3R:9570840-9570960 1.0000 120 chrX:14948641-14948761 1.0000 120 chr3R:25300081-25300201 1.0000 120 chr2R:7777638-7777758 1.0000 120 chr3L:3944618-3944738 1.0000 120 chr3L:14004660-14004780 1.0000 120 chr2L:8692931-8693051 1.0000 120 chrX:1480750-1480870 1.0000 120 chrX:19616405-19616525 1.0000 120 chrX:18093391-18093511 1.0000 120 chr3R:14027605-14027725 1.0000 120 chr3L:9500274-9500394 1.0000 120 chr3L:9420871-9420991 1.0000 120 chr3L:11685011-11685131 1.0000 120 chr2L:16820170-16820290 1.0000 120 chr2R:18547198-18547318 1.0000 120 chr2R:11205946-11206066 1.0000 120 chr2L:141127-141247 1.0000 120 chr3L:20384658-20384778 1.0000 120 chrX:21120201-21120321 1.0000 120 chrX:13407635-13407755 1.0000 120 chr2R:16027683-16027803 1.0000 120 chr3L:7974806-7974926 1.0000 120 chr2L:6785753-6785873 1.0000 120 chrX:2662020-2662140 1.0000 120 chrX:19260253-19260373 1.0000 120 chr3L:2423450-2423570 1.0000 120 chr3R:25025548-25025668 1.0000 120 chr2L:1938216-1938336 1.0000 120 chr3L:17007992-17008112 1.0000 120 chr3L:1336128-1336248 1.0000 120 chr2R:19290799-19290919 1.0000 120 chr2R:5967040-5967160 1.0000 120 chr3R:18572542-18572662 1.0000 120 chr3R:5846786-5846906 1.0000 120 chr3R:25032994-25033114 1.0000 120 chr3R:15984098-15984218 1.0000 120 chr3R:21268613-21268733 1.0000 120 chr3L:7834106-7834226 1.0000 120 chr2L:6966154-6966274 1.0000 120 chr3R:25295063-25295183 1.0000 120 chr2R:18796305-18796425 1.0000 120 chr3L:13954691-13954811 1.0000 120 chr2L:107155-107275 1.0000 120 chr2L:16731934-16732054 1.0000 120 chr2R:5145184-5145304 1.0000 120 chr3R:23930351-23930471 1.0000 120 chr3R:22684421-22684541 1.0000 120 chr3R:13363748-13363868 1.0000 120 chr3R:25306284-25306404 1.0000 120 chr3L:1169426-1169546 1.0000 120 chr2L:2200775-2200895 1.0000 120 chr2R:21609230-21609350 1.0000 120 chr2R:23723500-23723620 1.0000 120 chr3L:3343805-3343925 1.0000 120 chr2R:21648533-21648653 1.0000 120 chr2L:18575218-18575338 1.0000 120 chr3L:2256734-2256854 1.0000 120 chr3R:30888602-30888722 1.0000 120 chrX:10764765-10764885 1.0000 120 chr3R:23991675-23991795 1.0000 120 chr2L:20761183-20761303 1.0000 120 chr2L:19052176-19052296 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_cnc/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/cnc.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.283 C 0.217 G 0.209 T 0.291 Background letter frequencies (from file dataset with add-one prior applied): A 0.283 C 0.217 G 0.209 T 0.291 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ATGACTTG MEME-1 width = 8 sites = 40 llr = 357 E-value = 6.1e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGACTTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 9::a::2: pos.-specific C ::::a:2: probability G 2:a::12a matrix T :a:::95: bits 2.3 * * 2.0 * * * 1.8 **** * 1.6 **** * Relative 1.4 ****** * Entropy 1.1 ****** * (12.9 bits) 0.9 ****** * 0.7 ****** * 0.5 ****** * 0.2 ******** 0.0 -------- Multilevel ATGACTTG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGACTTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:1336128-1336248 49 1.87e-05 TACACGAAGC ATGACTTG TGGAAATTCC chr3L:3944618-3944738 44 1.87e-05 CAGTCGGTAC ATGACTTG CAAATCTTTC chr3R:25287132-25287252 84 1.87e-05 GCCTAACATC ATGACTTG ACGTTATTGT chr2L:4898150-4898270 38 1.87e-05 TGACAGGAAA ATGACTTG GCACCTTGAC chr2L:7048316-7048436 58 1.87e-05 GTACGTTTTT ATGACTTG CACGTTTCTC chr3R:12675634-12675754 81 1.87e-05 TAATCCAATG ATGACTTG CTTCTAATTG chr2L:7440435-7440555 43 1.87e-05 CATTTTTCAT ATGACTTG TTTATTTATG chr3L:2810372-2810492 39 1.87e-05 TCAAGCGATG ATGACTTG TGCTTTTCCC chr2R:22667279-22667399 93 1.87e-05 AACATTGACA ATGACTTG CAGATCAAGC chr2L:17447999-17448119 109 1.87e-05 TAAATCGCCG ATGACTTG CTGG chrX:16287662-16287782 95 1.87e-05 TCCCATCTAC ATGACTTG CAGTCTTTCA chr2R:14884493-14884613 31 1.87e-05 ACGAATAACG ATGACTTG CTCTTTATTC chr3R:24872507-24872627 54 1.87e-05 CAAGTTCAGA ATGACTTG CTTGTTGATT chr3R:5680208-5680328 72 1.87e-05 GCGCTCTGGC ATGACTTG CAATTAGTTA chr3L:5924380-5924500 45 1.87e-05 GCCTTTCCCA ATGACTTG GCTGTTCCAA chrX:2662020-2662140 45 5.03e-05 AGTACACTTT ATGACTGG CAAACTTTGG chr2R:18770858-18770978 63 5.03e-05 CCAACTCATC ATGACTAG CTTTCATGAG chr3R:19082656-19082776 88 5.03e-05 CACCACTGCA ATGACTAG AAGAATTCTA chr2R:16111293-16111413 83 5.03e-05 GCCCAAGAGC ATGACTGG GCGGCTTCTT chr2R:18805859-18805979 63 5.03e-05 GGTGCTCAAG ATGACTGG GCAAATGTGA chr3R:29769173-29769293 54 5.03e-05 TAGAGCTGCC ATGACTAG GCCAAATGGA chr3L:6754889-6755009 44 5.03e-05 AATCACTTGG ATGACTGG ACTTACACAG chr3R:14365503-14365623 67 5.03e-05 AATGCCAACG ATGACTGG TAGAATTTGC chr2L:16857270-16857390 104 5.03e-05 GAAAGTCAGA ATGACTAG CAGATTGGT chr2L:6785753-6785873 82 6.43e-05 TTCCCACACT ATGACTCG CCAAATCGAC chr2R:13158091-13158211 66 6.43e-05 CCCGTGGGAA ATGACTCG ACAATACCGC chr3R:19067354-19067474 56 6.43e-05 CATGTGTAGG ATGACTCG GCAACTGGGG chr2R:14881776-14881896 48 6.43e-05 GCTAGTAACG ATGACTCG CATTTTTATT chr3R:24080419-24080539 51 7.81e-05 TCTAGATAGC GTGACTTG CAAAACTAAA chr3L:16158559-16158679 64 9.15e-05 AGCGAGTGGC ATGACGTG GCACAAGTCA chr3R:14737103-14737223 32 9.15e-05 ATCGAAATCT ATGACGTG GTGATGGTCG chr2L:104928-105048 89 9.15e-05 TGTTGTTATG ATGACGTG TCGTTTCTCC chr3R:27742568-27742688 39 1.15e-04 TAATAACATC GTGACTAG TTAGAATTAT chr3L:15513897-15514017 33 1.15e-04 GTTGGCGGTA GTGACTGG CACTAATCGA chr3R:29503097-29503217 110 1.15e-04 CTGATCCCGC GTGACTAG GCA chr3R:16353819-16353939 48 1.25e-04 ATATATAGGC GTGACTCG CAGCTTTTGG chrX:8114052-8114172 22 1.25e-04 CCGGCAAACA GTGACTCG GCACAATCGC chr2L:16882484-16882604 4 1.48e-04 TCC ATGACGAG TGCATTTGAT chrX:2176179-2176299 60 1.48e-04 AAGGGTAAGC ATGACGAG TGAAATTGAT chr2L:6966154-6966274 60 1.87e-04 ACCTGTCGAC ATGACTTC ATGTATGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGACTTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1336128-1336248 1.9e-05 48_[+1]_64 chr3L:3944618-3944738 1.9e-05 43_[+1]_69 chr3R:25287132-25287252 1.9e-05 83_[+1]_29 chr2L:4898150-4898270 1.9e-05 37_[+1]_75 chr2L:7048316-7048436 1.9e-05 57_[+1]_55 chr3R:12675634-12675754 1.9e-05 80_[+1]_32 chr2L:7440435-7440555 1.9e-05 42_[+1]_70 chr3L:2810372-2810492 1.9e-05 38_[+1]_74 chr2R:22667279-22667399 1.9e-05 92_[+1]_20 chr2L:17447999-17448119 1.9e-05 108_[+1]_4 chrX:16287662-16287782 1.9e-05 94_[+1]_18 chr2R:14884493-14884613 1.9e-05 30_[+1]_82 chr3R:24872507-24872627 1.9e-05 53_[+1]_59 chr3R:5680208-5680328 1.9e-05 71_[+1]_41 chr3L:5924380-5924500 1.9e-05 44_[+1]_68 chrX:2662020-2662140 5e-05 44_[+1]_68 chr2R:18770858-18770978 5e-05 62_[+1]_50 chr3R:19082656-19082776 5e-05 87_[+1]_25 chr2R:16111293-16111413 5e-05 82_[+1]_30 chr2R:18805859-18805979 5e-05 62_[+1]_50 chr3R:29769173-29769293 5e-05 53_[+1]_59 chr3L:6754889-6755009 5e-05 43_[+1]_69 chr3R:14365503-14365623 5e-05 66_[+1]_46 chr2L:16857270-16857390 5e-05 103_[+1]_9 chr2L:6785753-6785873 6.4e-05 81_[+1]_31 chr2R:13158091-13158211 6.4e-05 65_[+1]_47 chr3R:19067354-19067474 6.4e-05 55_[+1]_57 chr2R:14881776-14881896 6.4e-05 47_[+1]_65 chr3R:24080419-24080539 7.8e-05 50_[+1]_62 chr3L:16158559-16158679 9.2e-05 63_[+1]_49 chr3R:14737103-14737223 9.2e-05 31_[+1]_81 chr2L:104928-105048 9.2e-05 88_[+1]_24 chr3R:27742568-27742688 0.00011 38_[+1]_74 chr3L:15513897-15514017 0.00011 32_[+1]_80 chr3R:29503097-29503217 0.00011 109_[+1]_3 chr3R:16353819-16353939 0.00013 47_[+1]_65 chrX:8114052-8114172 0.00013 21_[+1]_91 chr2L:16882484-16882604 0.00015 3_[+1]_109 chrX:2176179-2176299 0.00015 59_[+1]_53 chr2L:6966154-6966274 0.00019 59_[+1]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGACTTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGACTTG width=8 seqs=40 chr3L:1336128-1336248 ( 49) ATGACTTG 1 chr3L:3944618-3944738 ( 44) ATGACTTG 1 chr3R:25287132-25287252 ( 84) ATGACTTG 1 chr2L:4898150-4898270 ( 38) ATGACTTG 1 chr2L:7048316-7048436 ( 58) ATGACTTG 1 chr3R:12675634-12675754 ( 81) ATGACTTG 1 chr2L:7440435-7440555 ( 43) ATGACTTG 1 chr3L:2810372-2810492 ( 39) ATGACTTG 1 chr2R:22667279-22667399 ( 93) ATGACTTG 1 chr2L:17447999-17448119 ( 109) ATGACTTG 1 chrX:16287662-16287782 ( 95) ATGACTTG 1 chr2R:14884493-14884613 ( 31) ATGACTTG 1 chr3R:24872507-24872627 ( 54) ATGACTTG 1 chr3R:5680208-5680328 ( 72) ATGACTTG 1 chr3L:5924380-5924500 ( 45) ATGACTTG 1 chrX:2662020-2662140 ( 45) ATGACTGG 1 chr2R:18770858-18770978 ( 63) ATGACTAG 1 chr3R:19082656-19082776 ( 88) ATGACTAG 1 chr2R:16111293-16111413 ( 83) ATGACTGG 1 chr2R:18805859-18805979 ( 63) ATGACTGG 1 chr3R:29769173-29769293 ( 54) ATGACTAG 1 chr3L:6754889-6755009 ( 44) ATGACTGG 1 chr3R:14365503-14365623 ( 67) ATGACTGG 1 chr2L:16857270-16857390 ( 104) ATGACTAG 1 chr2L:6785753-6785873 ( 82) ATGACTCG 1 chr2R:13158091-13158211 ( 66) ATGACTCG 1 chr3R:19067354-19067474 ( 56) ATGACTCG 1 chr2R:14881776-14881896 ( 48) ATGACTCG 1 chr3R:24080419-24080539 ( 51) GTGACTTG 1 chr3L:16158559-16158679 ( 64) ATGACGTG 1 chr3R:14737103-14737223 ( 32) ATGACGTG 1 chr2L:104928-105048 ( 89) ATGACGTG 1 chr3R:27742568-27742688 ( 39) GTGACTAG 1 chr3L:15513897-15514017 ( 33) GTGACTGG 1 chr3R:29503097-29503217 ( 110) GTGACTAG 1 chr3R:16353819-16353939 ( 48) GTGACTCG 1 chrX:8114052-8114172 ( 22) GTGACTCG 1 chr2L:16882484-16882604 ( 4) ATGACGAG 1 chrX:2176179-2176299 ( 60) ATGACGAG 1 chr2L:6966154-6966274 ( 60) ATGACTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGACTTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4064 E= 6.1e-011 159 -1197 -48 -1197 -1197 -1197 -1197 178 -1197 -1197 226 -1197 182 -1197 -1197 -1197 -1197 220 -1197 -1197 -1197 -1197 -74 159 -50 -53 -48 78 -1197 -312 222 -1197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGACTTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 6.1e-011 0.850000 0.000000 0.150000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.200000 0.150000 0.150000 0.500000 0.000000 0.025000 0.975000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGACTTG MEME-1 regular expression -------------------------------------------------------------------------------- ATGACT[TA]G -------------------------------------------------------------------------------- Time 7.38 secs. ******************************************************************************** ******************************************************************************** MOTIF GCMAGTCA MEME-2 width = 8 sites = 23 llr = 227 E-value = 3.2e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCMAGTCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::6a:::a pos.-specific C 2a3:::a: probability G 8:::a::: matrix T ::1::a:: bits 2.3 * * * 2.0 * * * 1.8 * ***** 1.6 ** ***** Relative 1.4 ** ***** Entropy 1.1 ** ***** (14.2 bits) 0.9 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCAAGTCA consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMAGTCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:18547198-18547318 64 1.36e-05 TTGCTTTTCA GCAAGTCA TTGGCTGTGG chr2L:16820170-16820290 101 1.36e-05 CTGCGAAACC GCAAGTCA ACACAAAATC chr3R:14027605-14027725 52 1.36e-05 TACAATATGT GCAAGTCA CAGGTTCTTC chrX:2070173-2070293 1 1.36e-05 . GCAAGTCA TGAATTACCC chr3R:21876705-21876825 17 1.36e-05 TTAGTCAAAT GCAAGTCA TCATCATAGT chr3L:15513383-15513503 52 1.36e-05 TAAACAGCTT GCAAGTCA TATTAAGTTC chr4:879854-879974 24 1.36e-05 CCCCGAGTCT GCAAGTCA TTGAAGAGAG chr3R:15353352-15353472 98 1.36e-05 AAAGGGAGGC GCAAGTCA TGCAGAGATA chr2R:8714743-8714863 37 1.36e-05 CGAAATTTCT GCAAGTCA GCTACCTTAA chr2L:12376080-12376200 56 1.36e-05 GCATAAATAT GCAAGTCA TGCGCCGAGT chr2L:8696779-8696899 25 1.36e-05 AAATAAAACT GCAAGTCA CGATGAGTAA chr3R:27945496-27945616 74 1.36e-05 CTTTTCTTCT GCAAGTCA TGGTTACTCA chr3R:25306284-25306404 29 2.40e-05 AGCCATTTTA GCCAGTCA TGATGATTGT chr2R:5967040-5967160 33 2.40e-05 CTCCCTTTTC GCCAGTCA TCTAGTAAGC chr2L:1720606-1720726 79 2.40e-05 AGGCAAGAGT GCCAGTCA TGCTTGTGAG chr2R:14246102-14246222 11 2.40e-05 CGTGAAATTG GCCAGTCA TGTCGTCAGT chr3R:24860555-24860675 27 3.81e-05 GTGCCCAGCG CCAAGTCA TTCACACCGC chrX:19754841-19754961 43 3.81e-05 TAAGAAATAA CCAAGTCA TCACGACTCG chr3R:21268613-21268733 103 4.89e-05 GAAGTGGAAG CCCAGTCA CTGTTTTAAC chr3R:9570840-9570960 22 4.89e-05 CAAAGCTCCC CCCAGTCA AAACAGTAAA chr2R:24956675-24956795 31 4.89e-05 AGGAAAATAG CCCAGTCA TGCGGCACTA chr3R:25300081-25300201 47 6.28e-05 GCTTATACCA GCTAGTCA TCGTGAAGTT chr2R:20655222-20655342 16 6.28e-05 TAAGGTACTA GCTAGTCA CGGTTGAAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMAGTCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18547198-18547318 1.4e-05 63_[+2]_49 chr2L:16820170-16820290 1.4e-05 100_[+2]_12 chr3R:14027605-14027725 1.4e-05 51_[+2]_61 chrX:2070173-2070293 1.4e-05 [+2]_112 chr3R:21876705-21876825 1.4e-05 16_[+2]_96 chr3L:15513383-15513503 1.4e-05 51_[+2]_61 chr4:879854-879974 1.4e-05 23_[+2]_89 chr3R:15353352-15353472 1.4e-05 97_[+2]_15 chr2R:8714743-8714863 1.4e-05 36_[+2]_76 chr2L:12376080-12376200 1.4e-05 55_[+2]_57 chr2L:8696779-8696899 1.4e-05 24_[+2]_88 chr3R:27945496-27945616 1.4e-05 73_[+2]_39 chr3R:25306284-25306404 2.4e-05 28_[+2]_84 chr2R:5967040-5967160 2.4e-05 32_[+2]_80 chr2L:1720606-1720726 2.4e-05 78_[+2]_34 chr2R:14246102-14246222 2.4e-05 10_[+2]_102 chr3R:24860555-24860675 3.8e-05 26_[+2]_86 chrX:19754841-19754961 3.8e-05 42_[+2]_70 chr3R:21268613-21268733 4.9e-05 102_[+2]_10 chr3R:9570840-9570960 4.9e-05 21_[+2]_91 chr2R:24956675-24956795 4.9e-05 30_[+2]_82 chr3R:25300081-25300201 6.3e-05 46_[+2]_66 chr2R:20655222-20655342 6.3e-05 15_[+2]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMAGTCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCMAGTCA width=8 seqs=23 chr2R:18547198-18547318 ( 64) GCAAGTCA 1 chr2L:16820170-16820290 ( 101) GCAAGTCA 1 chr3R:14027605-14027725 ( 52) GCAAGTCA 1 chrX:2070173-2070293 ( 1) GCAAGTCA 1 chr3R:21876705-21876825 ( 17) GCAAGTCA 1 chr3L:15513383-15513503 ( 52) GCAAGTCA 1 chr4:879854-879974 ( 24) GCAAGTCA 1 chr3R:15353352-15353472 ( 98) GCAAGTCA 1 chr2R:8714743-8714863 ( 37) GCAAGTCA 1 chr2L:12376080-12376200 ( 56) GCAAGTCA 1 chr2L:8696779-8696899 ( 25) GCAAGTCA 1 chr3R:27945496-27945616 ( 74) GCAAGTCA 1 chr3R:25306284-25306404 ( 29) GCCAGTCA 1 chr2R:5967040-5967160 ( 33) GCCAGTCA 1 chr2L:1720606-1720726 ( 79) GCCAGTCA 1 chr2R:14246102-14246222 ( 11) GCCAGTCA 1 chr3R:24860555-24860675 ( 27) CCAAGTCA 1 chrX:19754841-19754961 ( 43) CCAAGTCA 1 chr3R:21268613-21268733 ( 103) CCCAGTCA 1 chr3R:9570840-9570960 ( 22) CCCAGTCA 1 chr2R:24956675-24956795 ( 31) CCCAGTCA 1 chr3R:25300081-25300201 ( 47) GCTAGTCA 1 chr2R:20655222-20655342 ( 16) GCTAGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMAGTCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.326 E= 3.2e-005 -1117 0 190 -1117 -1117 220 -1117 -1117 111 49 -1117 -174 182 -1117 -1117 -1117 -1117 -1117 226 -1117 -1117 -1117 -1117 178 -1117 220 -1117 -1117 182 -1117 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMAGTCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 3.2e-005 0.000000 0.217391 0.782609 0.000000 0.000000 1.000000 0.000000 0.000000 0.608696 0.304348 0.000000 0.086957 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMAGTCA MEME-2 regular expression -------------------------------------------------------------------------------- [GC]C[AC]AGTCA -------------------------------------------------------------------------------- Time 13.60 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCGTCA MEME-3 width = 8 sites = 8 llr = 87 E-value = 5.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGTCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::3:::a pos.-specific C a::8::a: probability G ::a:a::: matrix T :a:::a:: bits 2.3 * * * * 2.0 * * * * 1.8 *** **** 1.6 *** **** Relative 1.4 ******** Entropy 1.1 ******** (15.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:1169426-1169546 69 1.07e-05 CAGCGAGTCA CTGCGTCA CCAGTCCCTC chr3L:7834106-7834226 86 1.07e-05 CTAATTACCG CTGCGTCA TTCCCAGTAA chrX:19260253-19260373 53 1.07e-05 gttgcttgtG CTGCGTCA TCGTTTTTGG chr3R:23061733-23061853 14 1.07e-05 CGTGGAAGTG CTGCGTCA CGAGATATTC chr3L:22474125-22474245 31 1.07e-05 CGATTTTGTG CTGCGTCA GAGGTTACTT chr2R:23977894-23978014 65 1.07e-05 GCATGTTCCG CTGCGTCA TTCTGTAGAT chr3L:9712210-9712330 37 2.46e-05 GAGCTCGTTG CTGAGTCA TTCCCCGTGG chr2L:7441672-7441792 43 2.46e-05 TCGTTTTAAG CTGAGTCA CTATGATTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1169426-1169546 1.1e-05 68_[+3]_44 chr3L:7834106-7834226 1.1e-05 85_[+3]_27 chrX:19260253-19260373 1.1e-05 52_[+3]_60 chr3R:23061733-23061853 1.1e-05 13_[+3]_99 chr3L:22474125-22474245 1.1e-05 30_[+3]_82 chr2R:23977894-23978014 1.1e-05 64_[+3]_48 chr3L:9712210-9712330 2.5e-05 36_[+3]_76 chr2L:7441672-7441792 2.5e-05 42_[+3]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGTCA width=8 seqs=8 chr3L:1169426-1169546 ( 69) CTGCGTCA 1 chr3L:7834106-7834226 ( 86) CTGCGTCA 1 chrX:19260253-19260373 ( 53) CTGCGTCA 1 chr3R:23061733-23061853 ( 14) CTGCGTCA 1 chr3L:22474125-22474245 ( 31) CTGCGTCA 1 chr2R:23977894-23978014 ( 65) CTGCGTCA 1 chr3L:9712210-9712330 ( 37) CTGAGTCA 1 chr2L:7441672-7441792 ( 43) CTGAGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.019 E= 5.4e+004 -965 220 -965 -965 -965 -965 -965 178 -965 -965 225 -965 -18 179 -965 -965 -965 -965 225 -965 -965 -965 -965 178 -965 220 -965 -965 182 -965 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 5.4e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCA MEME-3 regular expression -------------------------------------------------------------------------------- CTG[CA]GTCA -------------------------------------------------------------------------------- Time 19.77 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGTGGG MEME-4 width = 8 sites = 2 llr = 24 E-value = 5.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGTGGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:::::: probability G a:aa:aaa matrix T ::::a::: bits 2.3 **** *** 2.0 **** *** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (17.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGGTGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGTGGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:5967040-5967160 49 5.26e-06 CATCTAGTAA GCGGTGGG ACTTTTTGTG chr3L:17007992-17008112 65 5.26e-06 GCGATGTGAT GCGGTGgg tatggtatgg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGTGGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:5967040-5967160 5.3e-06 48_[+4]_64 chr3L:17007992-17008112 5.3e-06 64_[+4]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGTGGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGTGGG width=8 seqs=2 chr2R:5967040-5967160 ( 49) GCGGTGGG 1 chr3L:17007992-17008112 ( 65) GCGGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGTGGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 5.5e+004 -765 -765 225 -765 -765 220 -765 -765 -765 -765 225 -765 -765 -765 225 -765 -765 -765 -765 178 -765 -765 225 -765 -765 -765 225 -765 -765 -765 225 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGTGGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.5e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGTGGG MEME-4 regular expression -------------------------------------------------------------------------------- GCGGTGGG -------------------------------------------------------------------------------- Time 25.92 secs. ******************************************************************************** ******************************************************************************** MOTIF ACGGCGTG MEME-5 width = 8 sites = 4 llr = 47 E-value = 9.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACGGCGTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A a::::::: pos.-specific C :a::a::: probability G ::aa:a:a matrix T ::::::a: bits 2.3 ***** * 2.0 ***** * 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (17.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACGGCGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGGCGTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2200775-2200895 93 7.40e-06 TCGTGTTCGT ACGGCGTG CAATTTCTTC chr3L:8680189-8680309 111 7.40e-06 CTTGCTCATC ACGGCGTG CC chr2L:19053243-19053363 85 7.40e-06 GCTATACGGG ACGGCGTG ATTGAGGCTA chr2R:9126329-9126449 25 7.40e-06 CGGGCGAGAT ACGGCGTG AATGAGATAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGGCGTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2200775-2200895 7.4e-06 92_[+5]_20 chr3L:8680189-8680309 7.4e-06 110_[+5]_2 chr2L:19053243-19053363 7.4e-06 84_[+5]_28 chr2R:9126329-9126449 7.4e-06 24_[+5]_88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGGCGTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACGGCGTG width=8 seqs=4 chr2L:2200775-2200895 ( 93) ACGGCGTG 1 chr3L:8680189-8680309 ( 111) ACGGCGTG 1 chr2L:19053243-19053363 ( 85) ACGGCGTG 1 chr2R:9126329-9126449 ( 25) ACGGCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGGCGTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 9.3e+004 182 -865 -865 -865 -865 220 -865 -865 -865 -865 225 -865 -865 -865 225 -865 -865 220 -865 -865 -865 -865 225 -865 -865 -865 -865 178 -865 -865 225 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGGCGTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 9.3e+004 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGGCGTG MEME-5 regular expression -------------------------------------------------------------------------------- ACGGCGTG -------------------------------------------------------------------------------- Time 32.08 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15741020-15741140 2.43e-01 120 chr3R:5789691-5789811 4.26e-01 120 chr2R:12198522-12198642 3.48e-01 120 chr3L:22070610-22070730 6.26e-01 120 chr2L:16857270-16857390 5.25e-02 103_[+1(5.03e-05)]_9 chr3R:27945496-27945616 6.78e-02 73_[+2(1.36e-05)]_39 chrX:2176179-2176299 2.70e-01 120 chrX:8114052-8114172 1.52e-01 120 chr3R:7490001-7490121 6.72e-01 120 chr3R:29503097-29503217 7.35e-02 120 chr2L:9789910-9790030 4.15e-01 120 chrX:6341762-6341882 6.27e-01 120 chr2R:23610979-23611099 4.85e-01 120 chr2L:8696779-8696899 2.88e-02 24_[+2(1.36e-05)]_88 chr2L:10513994-10514114 3.82e-01 120 chr2R:14246102-14246222 3.10e-02 10_[+2(2.40e-05)]_102 chrX:1894006-1894126 1.55e-01 120 chrX:11859296-11859416 7.88e-01 120 chrX:16964007-16964127 1.10e-01 120 chr2L:6347015-6347135 3.91e-01 120 chr3R:14365503-14365623 2.50e-01 66_[+1(5.03e-05)]_46 chr3L:12258359-12258479 1.39e-01 120 chrX:6276141-6276261 9.10e-01 120 chrX:7925805-7925925 9.35e-01 120 chrX:4361636-4361756 2.59e-02 48_[+2(7.73e-05)]_64 chr3R:4685972-4686092 9.96e-01 120 chr3L:15513897-15514017 2.15e-02 120 chr2R:13540730-13540850 5.82e-01 120 chr2L:4895038-4895158 1.22e-01 120 chr2R:22479211-22479331 5.94e-01 120 chr2L:7990855-7990975 9.37e-01 120 chr3R:16620550-16620670 2.66e-01 120 chr2R:13588944-13589064 1.09e-01 120 chr2R:9126329-9126449 1.66e-02 24_[+5(7.40e-06)]_88 chr2R:18629509-18629629 8.24e-01 120 chr3L:12406215-12406335 2.44e-02 93_[+5(4.42e-05)]_19 chr3R:9437344-9437464 7.30e-01 120 chr3L:6754889-6755009 2.01e-02 43_[+1(5.03e-05)]_69 chr3L:3773473-3773593 3.32e-01 120 chr2R:17018922-17019042 1.33e-01 120 chr3L:9500871-9500991 8.53e-01 120 chr3L:5924380-5924500 1.25e-01 44_[+1(1.87e-05)]_68 chr3R:14301675-14301795 1.78e-01 120 chr3R:5680208-5680328 8.58e-02 71_[+1(1.87e-05)]_41 chr2R:22571495-22571615 9.77e-01 120 chr2L:3453328-3453448 1.18e-01 120 chr2R:24069508-24069628 4.64e-01 120 chr3R:23725506-23725626 3.22e-01 120 chr2L:12376080-12376200 4.91e-02 55_[+2(1.36e-05)]_57 chrX:10855352-10855472 6.53e-01 120 chr2R:9208091-9208211 3.25e-01 120 chr3R:30097001-30097121 6.46e-02 120 chr2L:20422620-20422740 2.92e-01 120 chrX:19272885-19273005 9.67e-01 120 chr3L:1774799-1774919 8.53e-02 120 chr3R:24117542-24117662 5.71e-02 120 chrX:11925071-11925191 4.16e-01 120 chr2L:7441672-7441792 1.08e-01 42_[+3(2.46e-05)]_70 chr3R:29769173-29769293 1.22e-01 53_[+1(5.03e-05)]_59 chr2R:7534267-7534387 4.54e-01 120 chr2R:8714743-8714863 4.97e-02 36_[+2(1.36e-05)]_76 chr2L:6340381-6340501 5.23e-01 120 chr3R:26229482-26229602 8.36e-01 120 chrX:3445987-3446107 8.31e-01 120 chr2L:10471413-10471533 6.16e-02 120 chr3R:23732635-23732755 8.76e-01 120 chr2L:4419670-4419790 7.36e-01 120 chr2L:854688-854808 9.77e-01 120 chr2R:23977894-23978014 8.71e-02 64_[+3(1.07e-05)]_48 chr2L:21315812-21315932 9.78e-01 120 chr3R:29797304-29797424 3.90e-01 120 chr3R:15353352-15353472 5.74e-02 97_[+2(1.36e-05)]_15 chr3R:24872507-24872627 3.21e-02 53_[+1(1.87e-05)]_59 chr2R:14884493-14884613 6.86e-02 30_[+1(1.87e-05)]_82 chrX:16287662-16287782 7.99e-03 94_[+1(1.87e-05)]_18 chr3R:24080419-24080539 8.72e-02 50_[+1(7.81e-05)]_62 chr2R:24956675-24956795 1.15e-01 30_[+2(4.89e-05)]_82 chr2L:104928-105048 2.01e-01 88_[+1(9.15e-05)]_24 chr3R:17077622-17077742 3.88e-01 120 chr3R:9336452-9336572 7.13e-01 120 chr2R:18805859-18805979 2.13e-01 62_[+1(5.03e-05)]_50 chr3R:13656603-13656723 1.00e+00 120 chr3L:4131363-4131483 8.77e-01 120 chr2L:15038478-15038598 5.32e-01 120 chr3R:27742568-27742688 1.14e-01 120 chr2R:14881776-14881896 8.00e-02 47_[+1(6.43e-05)]_65 chr3R:14737103-14737223 8.23e-03 11_[+2(7.73e-05)]_12_[+1(9.15e-05)]_\ 81 chrX:15730671-15730791 6.03e-01 120 chr3R:9957373-9957493 1.82e-01 120 chr3L:16665676-16665796 1.00e-01 120 chr2L:20878208-20878328 8.85e-01 120 chr2R:6173145-6173265 7.71e-01 120 chr3R:21171388-21171508 8.33e-01 120 chr2L:16528033-16528153 7.52e-01 120 chr2L:16850604-16850724 2.25e-01 120 chr3L:22474125-22474245 4.41e-02 30_[+3(1.07e-05)]_82 chrX:648153-648273 5.90e-01 120 chr2L:3620880-3621000 7.33e-01 120 chrX:19754841-19754961 1.25e-02 42_[+2(3.81e-05)]_70 chr2L:19053243-19053363 1.68e-04 84_[+5(7.40e-06)]_28 chr3L:19088512-19088632 5.96e-01 120 chr2R:7253187-7253307 4.74e-01 120 chr2L:17447999-17448119 2.07e-01 108_[+1(1.87e-05)]_4 chr2R:12334001-12334121 9.54e-01 120 chr3R:24260863-24260983 6.61e-01 120 chr3L:17623096-17623216 7.46e-01 120 chr2R:22310148-22310268 3.50e-01 120 chr3L:9339733-9339853 1.84e-01 120 chr2R:16111293-16111413 2.12e-01 82_[+1(5.03e-05)]_30 chr3R:19082656-19082776 1.64e-01 87_[+1(5.03e-05)]_25 chr2R:22667279-22667399 4.93e-02 92_[+1(1.87e-05)]_20 chr3L:8680189-8680309 2.28e-02 110_[+5(7.40e-06)]_2 chr3L:9712210-9712330 2.04e-02 36_[+3(2.46e-05)]_76 chrX:21364324-21364444 5.09e-01 120 chr2R:8153959-8154079 8.01e-01 120 chr2R:17682459-17682579 5.59e-01 120 chr2L:6224671-6224791 6.40e-01 120 chr2L:16885737-16885857 9.62e-02 120 chr2L:1720606-1720726 2.17e-01 78_[+2(2.40e-05)]_34 chrX:11134531-11134651 4.28e-01 120 chr2R:17708189-17708309 2.15e-01 120 chr2L:16882484-16882604 4.50e-01 120 chr3R:7909194-7909314 8.07e-01 120 chr3L:2810372-2810492 9.85e-03 38_[+1(1.87e-05)]_74 chr4:879854-879974 8.73e-02 23_[+2(1.36e-05)]_89 chr3R:6390169-6390289 8.50e-02 120 chr3L:15513383-15513503 5.49e-02 51_[+2(1.36e-05)]_61 chr2L:7440435-7440555 7.96e-02 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chr2L:20761183-20761303 7.51e-01 120 chr2L:19052176-19052296 9.72e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************