******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/cic.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:13091998-13092118 1.0000 120 chr2R:13501210-13501330 1.0000 120 chr3L:18087425-18087545 1.0000 120 chr2R:15221541-15221661 1.0000 120 chr2R:13605599-13605719 1.0000 120 chr2R:18387884-18388004 1.0000 120 chrX:16946743-16946863 1.0000 120 chrX:13125705-13125825 1.0000 120 chr2L:3164610-3164730 1.0000 120 chr2L:11844366-11844486 1.0000 120 chr2L:7794821-7794941 1.0000 120 chr3L:3140534-3140654 1.0000 120 chr2R:9140778-9140898 1.0000 120 chr3R:15547344-15547464 1.0000 120 chr3R:30107862-30107982 1.0000 120 chr2R:24749831-24749951 1.0000 120 chr2L:10532132-10532252 1.0000 120 chr3L:16843091-16843211 1.0000 120 chr3R:5843636-5843756 1.0000 120 chr3L:20243839-20243959 1.0000 120 chr3R:20963131-20963251 1.0000 120 chr3L:7858900-7859020 1.0000 120 chr2R:21609329-21609449 1.0000 120 chr3L:8071357-8071477 1.0000 120 chr2R:22597919-22598039 1.0000 120 chr2L:2371595-2371715 1.0000 120 chr3R:18581098-18581218 1.0000 120 chr3R:8219999-8220119 1.0000 120 chr3R:9571492-9571612 1.0000 120 chr3R:27553539-27553659 1.0000 120 chr2R:12438003-12438123 1.0000 120 chr3L:17584937-17585057 1.0000 120 chr2R:13544091-13544211 1.0000 120 chr3R:23989123-23989243 1.0000 120 chr3R:8821801-8821921 1.0000 120 chr3L:5753761-5753881 1.0000 120 chr2R:13895560-13895680 1.0000 120 chr2R:22220893-22221013 1.0000 120 chr3R:30779368-30779488 1.0000 120 chr2R:14871596-14871716 1.0000 120 chr3R:14226844-14226964 1.0000 120 chr2L:2728557-2728677 1.0000 120 chr3L:633349-633469 1.0000 120 chr2L:8700771-8700891 1.0000 120 chr3L:217676-217796 1.0000 120 chr3L:21501306-21501426 1.0000 120 chr3L:9640840-9640960 1.0000 120 chr3L:12411460-12411580 1.0000 120 chr2R:21380223-21380343 1.0000 120 chr3L:5638777-5638897 1.0000 120 chr3L:7520817-7520937 1.0000 120 chr2R:21193922-21194042 1.0000 120 chr3R:5842815-5842935 1.0000 120 chr2L:9785316-9785436 1.0000 120 chr2R:6142701-6142821 1.0000 120 chr3L:21936302-21936422 1.0000 120 chr2L:10147764-10147884 1.0000 120 chr3L:8101712-8101832 1.0000 120 chr3R:9570752-9570872 1.0000 120 chr3R:17060940-17061060 1.0000 120 chr2L:16317269-16317389 1.0000 120 chr2L:85874-85994 1.0000 120 chr2R:7253030-7253150 1.0000 120 chr3R:20658817-20658937 1.0000 120 chr3R:23326829-23326949 1.0000 120 chr2R:23680358-23680478 1.0000 120 chr2L:20673873-20673993 1.0000 120 chr3L:14557225-14557345 1.0000 120 chr2R:15143792-15143912 1.0000 120 chr3R:20839008-20839128 1.0000 120 chr3L:9847055-9847175 1.0000 120 chr2L:9333429-9333549 1.0000 120 chrX:18395242-18395362 1.0000 120 chr2L:6089713-6089833 1.0000 120 chrX:10719438-10719558 1.0000 120 chr2R:17574807-17574927 1.0000 120 chr3L:44139-44259 1.0000 120 chr2R:6629888-6630008 1.0000 120 chr2R:11715667-11715787 1.0000 120 chr2R:21688415-21688535 1.0000 120 chr3L:5642949-5643069 1.0000 120 chr3R:27954576-27954696 1.0000 120 chr2L:8202747-8202867 1.0000 120 chr3L:7826875-7826995 1.0000 120 chr3R:12303066-12303186 1.0000 120 chr3R:11196040-11196160 1.0000 120 chrX:18368766-18368886 1.0000 120 chr3L:9391753-9391873 1.0000 120 chr3R:10393438-10393558 1.0000 120 chr2L:21082736-21082856 1.0000 120 chrX:9865010-9865130 1.0000 120 chr3L:15515194-15515314 1.0000 120 chr2L:18704441-18704561 1.0000 120 chr3L:14006013-14006133 1.0000 120 chr3R:31778998-31779118 1.0000 120 chr2L:8400017-8400137 1.0000 120 chr3L:20317929-20318049 1.0000 120 chrX:10370793-10370913 1.0000 120 chrX:21276644-21276764 1.0000 120 chr3L:8726321-8726441 1.0000 120 chr3L:14609417-14609537 1.0000 120 chr3R:8809831-8809951 1.0000 120 chr2R:22114850-22114970 1.0000 120 chr3R:12405946-12406066 1.0000 120 chr3L:2504345-2504465 1.0000 120 chr3L:7790384-7790504 1.0000 120 chr2R:11104830-11104950 1.0000 120 chr2L:8131195-8131315 1.0000 120 chr3R:9532558-9532678 1.0000 120 chr3R:10328064-10328184 1.0000 120 chr3L:7829736-7829856 1.0000 120 chr2R:12483978-12484098 1.0000 120 chr3L:7775507-7775627 1.0000 120 chrX:2043805-2043925 1.0000 120 chr3L:16384281-16384401 1.0000 120 chr2R:8705494-8705614 1.0000 120 chrX:12801350-12801470 1.0000 120 chr3R:27954781-27954901 1.0000 120 chr3R:20584307-20584427 1.0000 120 chr3L:9846277-9846397 1.0000 120 chr2L:13900250-13900370 1.0000 120 chr2R:13228813-13228933 1.0000 120 chr2L:12619994-12620114 1.0000 120 chr3L:3437798-3437918 1.0000 120 chr3L:16800525-16800645 1.0000 120 chr3L:18642183-18642303 1.0000 120 chr2R:21298061-21298181 1.0000 120 chr2L:10411891-10412011 1.0000 120 chrX:8037489-8037609 1.0000 120 chr2L:142574-142694 1.0000 120 chrX:6346255-6346375 1.0000 120 chr3L:9717270-9717390 1.0000 120 chr3R:9420578-9420698 1.0000 120 chr2R:24987640-24987760 1.0000 120 chrX:3708271-3708391 1.0000 120 chrX:10845359-10845479 1.0000 120 chr2R:19480519-19480639 1.0000 120 chr3L:13457247-13457367 1.0000 120 chr2L:13088624-13088744 1.0000 120 chr2L:16886523-16886643 1.0000 120 chr3R:9917478-9917598 1.0000 120 chr3R:8739976-8740096 1.0000 120 chr2R:19466178-19466298 1.0000 120 chr3R:20262087-20262207 1.0000 120 chr2L:8708555-8708675 1.0000 120 chrX:3442683-3442803 1.0000 120 chr3L:17622588-17622708 1.0000 120 chr2R:21290480-21290600 1.0000 120 chr3L:7831936-7832056 1.0000 120 chr3R:24264750-24264870 1.0000 120 chrX:13651329-13651449 1.0000 120 chr2R:7726630-7726750 1.0000 120 chr2L:13900456-13900576 1.0000 120 chr3R:29926223-29926343 1.0000 120 chr3L:8731632-8731752 1.0000 120 chr2R:10052721-10052841 1.0000 120 chr3L:3344016-3344136 1.0000 120 chr2L:11981366-11981486 1.0000 120 chr2R:9685718-9685838 1.0000 120 chr2R:17442833-17442953 1.0000 120 chr3R:10404054-10404174 1.0000 120 chr2R:9792312-9792432 1.0000 120 chrX:17186576-17186696 1.0000 120 chr3L:4130882-4131002 1.0000 120 chr3L:14783344-14783464 1.0000 120 chr2L:7793311-7793431 1.0000 120 chr3R:30105218-30105338 1.0000 120 chrX:11561571-11561691 1.0000 120 chr3R:8823175-8823295 1.0000 120 chr2R:12642851-12642971 1.0000 120 chr3R:16155968-16156088 1.0000 120 chr3R:5296810-5296930 1.0000 120 chr2R:10418517-10418637 1.0000 120 chr2R:7714236-7714356 1.0000 120 chr3R:15535363-15535483 1.0000 120 chr2R:9190884-9191004 1.0000 120 chr2R:16008329-16008449 1.0000 120 chr3R:20274683-20274803 1.0000 120 chr3R:21182064-21182184 1.0000 120 chrX:16309088-16309208 1.0000 120 chr3L:4286393-4286513 1.0000 120 chrX:2339460-2339580 1.0000 120 chr3R:30012923-30013043 1.0000 120 chr3R:16190858-16190978 1.0000 120 chr3L:18810627-18810747 1.0000 120 chr2L:1708248-1708368 1.0000 120 chr3L:8185401-8185521 1.0000 120 chr2R:11425278-11425398 1.0000 120 chr2R:5957567-5957687 1.0000 120 chr3R:19925686-19925806 1.0000 120 chr3R:8663517-8663637 1.0000 120 chr2L:2423087-2423207 1.0000 120 chr3R:30352854-30352974 1.0000 120 chr3L:9689969-9690089 1.0000 120 chr3R:27110746-27110866 1.0000 120 chr2L:9530090-9530210 1.0000 120 chr3L:7792742-7792862 1.0000 120 chr3R:10759532-10759652 1.0000 120 chr2L:18329757-18329877 1.0000 120 chr3R:19132549-19132669 1.0000 120 chr2L:5341166-5341286 1.0000 120 chr3L:19606253-19606373 1.0000 120 chr3R:23317048-23317168 1.0000 120 chr3L:12184601-12184721 1.0000 120 chrX:8159528-8159648 1.0000 120 chr3R:13032498-13032618 1.0000 120 chr3R:19051451-19051571 1.0000 120 chr3R:8353349-8353469 1.0000 120 chr3L:11773935-11774055 1.0000 120 chr2R:7721005-7721125 1.0000 120 chr2R:21079385-21079505 1.0000 120 chr3L:11290207-11290327 1.0000 120 chr2L:5332740-5332860 1.0000 120 chr2R:10553105-10553225 1.0000 120 chr3R:14747260-14747380 1.0000 120 chr3R:20546828-20546948 1.0000 120 chr2L:16637414-16637534 1.0000 120 chr2L:5334750-5334870 1.0000 120 chr2R:17133988-17134108 1.0000 120 chr2R:21217628-21217748 1.0000 120 chr3R:10762573-10762693 1.0000 120 chr3R:30282806-30282926 1.0000 120 chr2L:13069137-13069257 1.0000 120 chr2L:1127857-1127977 1.0000 120 chr3L:11213774-11213894 1.0000 120 chr2L:14356383-14356503 1.0000 120 chr2L:16522375-16522495 1.0000 120 chr3R:18398188-18398308 1.0000 120 chr3R:31761783-31761903 1.0000 120 chr3L:14986126-14986246 1.0000 120 chr2R:14873447-14873567 1.0000 120 chr2L:8955749-8955869 1.0000 120 chr2R:14912272-14912392 1.0000 120 chr3L:3415737-3415857 1.0000 120 chr3L:15980051-15980171 1.0000 120 chr2L:120688-120808 1.0000 120 chr2L:16888873-16888993 1.0000 120 chr3R:20284002-20284122 1.0000 120 chr2L:9232238-9232358 1.0000 120 chr3R:19873477-19873597 1.0000 120 chr2R:18409070-18409190 1.0000 120 chr2L:3308932-3309052 1.0000 120 chr2L:16276982-16277102 1.0000 120 chr3L:2599203-2599323 1.0000 120 chr3L:2600659-2600779 1.0000 120 chr2L:8768844-8768964 1.0000 120 chr3R:11154716-11154836 1.0000 120 chr2R:11216429-11216549 1.0000 120 chr3L:5639949-5640069 1.0000 120 chr3R:19910433-19910553 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_cic/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/cic.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.29 C 0.213 G 0.214 T 0.283 Background letter frequencies (from file dataset with add-one prior applied): A 0.29 C 0.213 G 0.214 T 0.283 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGAATGAA MEME-1 width = 8 sites = 27 llr = 253 E-value = 7.6e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGAATGAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::aa::7a pos.-specific C :2::::1: probability G :8:::a3: matrix T a:::a::: bits 2.2 * 2.0 * 1.8 * **** * 1.6 ****** * Relative 1.3 ****** * Entropy 1.1 ****** * (13.5 bits) 0.9 ****** * 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGAATGAA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAATGAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:10759532-10759652 70 2.59e-05 ACTCCAGTTG TGAATGAA TATCTCTATT chr2R:7714236-7714356 77 2.59e-05 AGCACTTTTG TGAATGAA ACAATCGGCT chr2L:8708555-8708675 87 2.59e-05 GTTGACCGCA TGAATGAA AGCGAATATG chrX:3708271-3708391 85 2.59e-05 AACTTTTCAT TGAATGAA TGTGGATTTT chrX:2043805-2043925 24 2.59e-05 GACAGGGGAC TGAATGAA TGCAAGTCGC chr2L:9333429-9333549 9 2.59e-05 GCTTTTGA TGAATGAA AGTCAACCCT chr2R:15143792-15143912 93 2.59e-05 TGTATTCGAT TGAATGAA ATGTGAAGTA chr3R:23326829-23326949 49 2.59e-05 TCTTGAATCA TGAATGAA ATTTTGTTTT chr2R:7253030-7253150 71 2.59e-05 CGTCCGCTTA TGAATGAA TTTCGCAGTG chr3L:8101712-8101832 105 2.59e-05 TATTTTTATG TGAATGAA AATAAATA chr2R:21380223-21380343 63 2.59e-05 ACTCGAACCA TGAATGAA TTGAAGTTCA chr3L:9640840-9640960 56 2.59e-05 GTGCACGGCA TGAATGAA TCCTCTAAGT chr3L:3140534-3140654 34 2.59e-05 CCGTGTTTTA TGAATGAA ACAGCTTTTC chr2R:13605599-13605719 39 2.59e-05 TAGTTGCTTG TGAATGAA ATTTTGGATG chr3L:18087425-18087545 13 2.59e-05 CAATTTTTCC TGAATGAA CAAAATCTAT chr3L:3415737-3415857 32 4.51e-05 GACTGATTTG TGAATGGA ATTCTCTGTG chr2R:21688415-21688535 1 4.51e-05 . TGAATGGA TGTGGCGGTT chr2R:13544091-13544211 51 4.51e-05 CGATTATCAT TGAATGGA TCGGCAAGTG chr2R:22597919-22598039 56 4.51e-05 TGATTAGTTG TGAATGGA TTACAGTGCG chrX:13125705-13125825 81 4.51e-05 CAGAAAGCGA TGAATGGA AAGCTATACG chr3L:9846277-9846397 41 7.09e-05 ATAAAGTTGC TCAATGAA AGAAATTAGC chr2R:12483978-12484098 46 7.09e-05 AAAAAAAATA TCAATGAA GCTCTGTTTC chr2L:9785316-9785436 101 7.09e-05 AAACAAGTAG TCAATGAA TACAAACCGC chr3L:8185401-8185521 44 9.00e-05 GAATTCTTAA TGAATGCA AAACGTAATT chr3R:12303066-12303186 11 9.00e-05 TAACAAATAA TGAATGCA GTTGTAATTA chr2L:12619994-12620114 99 1.09e-04 CGATGGGCAC TCAATGGA ACCGCTTGGC chr3L:20317929-20318049 30 1.09e-04 CATGAGGTCG TCAATGGA TCATCGCTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAATGAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10759532-10759652 2.6e-05 69_[+1]_43 chr2R:7714236-7714356 2.6e-05 76_[+1]_36 chr2L:8708555-8708675 2.6e-05 86_[+1]_26 chrX:3708271-3708391 2.6e-05 84_[+1]_28 chrX:2043805-2043925 2.6e-05 23_[+1]_89 chr2L:9333429-9333549 2.6e-05 8_[+1]_104 chr2R:15143792-15143912 2.6e-05 92_[+1]_20 chr3R:23326829-23326949 2.6e-05 48_[+1]_64 chr2R:7253030-7253150 2.6e-05 70_[+1]_42 chr3L:8101712-8101832 2.6e-05 104_[+1]_8 chr2R:21380223-21380343 2.6e-05 62_[+1]_50 chr3L:9640840-9640960 2.6e-05 55_[+1]_57 chr3L:3140534-3140654 2.6e-05 33_[+1]_79 chr2R:13605599-13605719 2.6e-05 38_[+1]_74 chr3L:18087425-18087545 2.6e-05 12_[+1]_100 chr3L:3415737-3415857 4.5e-05 31_[+1]_81 chr2R:21688415-21688535 4.5e-05 [+1]_112 chr2R:13544091-13544211 4.5e-05 50_[+1]_62 chr2R:22597919-22598039 4.5e-05 55_[+1]_57 chrX:13125705-13125825 4.5e-05 80_[+1]_32 chr3L:9846277-9846397 7.1e-05 40_[+1]_72 chr2R:12483978-12484098 7.1e-05 45_[+1]_67 chr2L:9785316-9785436 7.1e-05 100_[+1]_12 chr3L:8185401-8185521 9e-05 43_[+1]_69 chr3R:12303066-12303186 9e-05 10_[+1]_102 chr2L:12619994-12620114 0.00011 98_[+1]_14 chr3L:20317929-20318049 0.00011 29_[+1]_83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAATGAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGAATGAA width=8 seqs=27 chr3R:10759532-10759652 ( 70) TGAATGAA 1 chr2R:7714236-7714356 ( 77) TGAATGAA 1 chr2L:8708555-8708675 ( 87) TGAATGAA 1 chrX:3708271-3708391 ( 85) TGAATGAA 1 chrX:2043805-2043925 ( 24) TGAATGAA 1 chr2L:9333429-9333549 ( 9) TGAATGAA 1 chr2R:15143792-15143912 ( 93) TGAATGAA 1 chr3R:23326829-23326949 ( 49) TGAATGAA 1 chr2R:7253030-7253150 ( 71) TGAATGAA 1 chr3L:8101712-8101832 ( 105) TGAATGAA 1 chr2R:21380223-21380343 ( 63) TGAATGAA 1 chr3L:9640840-9640960 ( 56) TGAATGAA 1 chr3L:3140534-3140654 ( 34) TGAATGAA 1 chr2R:13605599-13605719 ( 39) TGAATGAA 1 chr3L:18087425-18087545 ( 13) TGAATGAA 1 chr3L:3415737-3415857 ( 32) TGAATGGA 1 chr2R:21688415-21688535 ( 1) TGAATGGA 1 chr2R:13544091-13544211 ( 51) TGAATGGA 1 chr2R:22597919-22598039 ( 56) TGAATGGA 1 chrX:13125705-13125825 ( 81) TGAATGGA 1 chr3L:9846277-9846397 ( 41) TCAATGAA 1 chr2R:12483978-12484098 ( 46) TCAATGAA 1 chr2L:9785316-9785436 ( 101) TCAATGAA 1 chr3L:8185401-8185521 ( 44) TGAATGCA 1 chr3R:12303066-12303186 ( 11) TGAATGCA 1 chr2L:12619994-12620114 ( 99) TCAATGGA 1 chr3L:20317929-20318049 ( 30) TCAATGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAATGAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5992 E= 7.6e-003 -1140 -1140 -1140 182 -1140 -20 193 -1140 179 -1140 -1140 -1140 179 -1140 -1140 -1140 -1140 -1140 -1140 182 -1140 -1140 223 -1140 120 -152 28 -1140 179 -1140 -1140 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAATGAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 7.6e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.185185 0.814815 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.074074 0.259259 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAATGAA MEME-1 regular expression -------------------------------------------------------------------------------- TGAATG[AG]A -------------------------------------------------------------------------------- Time 8.60 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGTTKWY MEME-2 width = 8 sites = 45 llr = 371 E-value = 7.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGTTKWY MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::4: pos.-specific C :::::::4 probability G ::a::4:2 matrix T aa:aa665 bits 2.2 * 2.0 * 1.8 ***** 1.6 ***** Relative 1.3 ***** Entropy 1.1 ****** (11.9 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGTTTTT consensus GAC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTKWY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5639949-5640069 26 2.34e-05 GCAATTTTTG TTGTTTTC GCATTCAATT chr3R:31761783-31761903 24 2.34e-05 CACTCATTCA TTGTTTTC GCTGTCATCC chr2L:16637414-16637534 57 2.34e-05 CCGCTTTCGT TTGTTTTC CCCAGCTCAT chr3L:7831936-7832056 105 2.34e-05 ATGAATGCGC TTGTTTTC GTGTGGTC chr2R:14871596-14871716 69 2.34e-05 TCAGTTCGAT TTGTTTTC AGTGCGCCTA chr3L:20243839-20243959 58 2.34e-05 CACATACAAC TTGTTTTC ATCATATATG chr3R:19910433-19910553 19 7.22e-05 AATACATTGT TTGTTTTT TGTTGTTGTT chr3R:13032498-13032618 65 7.22e-05 GACGGTTGTG TTGTTTTT TAATCGGCGG chrX:3708271-3708391 15 7.22e-05 CAAATAATAT TTGTTTTT TACGTAATCA chr3R:12405946-12406066 32 7.22e-05 CGGGAGCGTT TTGTTGTC CCCACGCAGA chr2R:6629888-6630008 35 7.22e-05 GCAGGTGTGT TTGTTTTT CTAATCTCTC chr3R:23326829-23326949 60 7.22e-05 GAATGAAATT TTGTTTTT GCTCTTTATC chr3R:8821801-8821921 9 7.22e-05 TTACTTGC TTGTTTTT AATACACACC chr3R:30107862-30107982 25 7.22e-05 ATAATTTCTG TTGTTTTT TCCGCAAAAA chr3R:20284002-20284122 87 1.20e-04 CTGCATTATT TTGTTGTT GCATGCTTTG chr2R:21217628-21217748 17 1.20e-04 GAAATACAAA TTGTTTAC TTTTAATAGG chr3L:9689969-9690089 83 1.20e-04 gtttattatt ttgtttac acttcgtttt chr2L:2423087-2423207 41 1.20e-04 ACGCTTCTTA TTGTTTAC TTCGCGTGGA chrX:16309088-16309208 68 1.20e-04 ACCCCGCGAA TTGTTTAC TAAGCTTTTT chr3R:20274683-20274803 15 1.20e-04 GTGTGGGTCT TTGTTGTT GTTATTCTTG chr3R:5296810-5296930 38 1.20e-04 GTGACCCCCT TTGTTGTT CTAGGTGTTA chr2R:9685718-9685838 20 1.20e-04 ACTATCTTTC TTGTTTAC TGGCTTTCGC chr2L:8708555-8708675 45 1.20e-04 attgttattg ttgttgtt gctattttga chr3R:9917478-9917598 89 1.20e-04 TTTTCGGCCT TTGTTGTT GGCTTGCACT chr3L:16800525-16800645 49 1.20e-04 CTCCAGAGCT TTGTTTAC CCTTTAGTTT chr3R:10328064-10328184 45 1.20e-04 CGCCTCGttg ttgttgtt attattatta chr2L:18704441-18704561 26 1.20e-04 AGTCTATATC TTGTTTAC GCTACTAACT chrX:18395242-18395362 8 1.20e-04 CAGTGTT TTGTTTAC AACGCCAGGC chr3R:18581098-18581218 22 1.20e-04 TTTAATTTTA TTGTTGTT TATTGCTAAA chr2R:18387884-18388004 35 1.20e-04 CAGTCTGCAC TTGTTTAC GCTCAATTTC chr3R:30352854-30352974 34 1.70e-04 ACTATTTCTG TTGTTGAC AGCACTTATC chrX:10370793-10370913 13 1.70e-04 TTGAGGCTAT TTGTTTAT TTACATTACC chr3R:23989123-23989243 86 1.70e-04 AATAGATGGA TTGTTTAT ACACCGCAGC chr2L:13900456-13900576 62 1.94e-04 AGTAATAAGC TTGTTGAT ATGAGATTGT chr3L:9640840-9640960 94 1.94e-04 TACGATTTCA TTGTTGAT TGATAATAGG chr2R:13895560-13895680 32 1.94e-04 ACTACTCTGT TTGTTGAT TCACTTAATT chr2R:21609329-21609449 73 1.94e-04 ACGGGAATCG TTGTTGAT TGCCGGTTTC chr3L:7858900-7859020 69 1.94e-04 CGTGTGCTCT TTGTTGAT CTAGCGAGAA chr3L:7826875-7826995 25 2.17e-04 TTGCTATTGT TTGTTTTG TTTGCCTTTT chr3R:20963131-20963251 56 2.17e-04 GCTTGATGTT TTGTTTTG TGCACCTCAA chr2L:8400017-8400137 42 2.35e-04 TGATAAGACT TTGTTGTG GTCAGTTTCA chr3L:5642949-5643069 84 2.35e-04 GCAATGCCGG TTGTTGTG TGTGTATGTG chr3R:20262087-20262207 85 2.59e-04 CATTAATGAG TTGTTTAG CTGTCAACTG chr3R:5842815-5842935 35 2.78e-04 GACCATCAAC TTGTTGAG ATACTACCCC chr3R:9571492-9571612 11 2.78e-04 AATCAAGTAT TTGTTGAG TATGGGCTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTKWY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5639949-5640069 2.3e-05 25_[+2]_87 chr3R:31761783-31761903 2.3e-05 23_[+2]_89 chr2L:16637414-16637534 2.3e-05 56_[+2]_56 chr3L:7831936-7832056 2.3e-05 104_[+2]_8 chr2R:14871596-14871716 2.3e-05 68_[+2]_44 chr3L:20243839-20243959 2.3e-05 57_[+2]_55 chr3R:19910433-19910553 7.2e-05 18_[+2]_94 chr3R:13032498-13032618 7.2e-05 64_[+2]_48 chrX:3708271-3708391 7.2e-05 14_[+2]_98 chr3R:12405946-12406066 7.2e-05 31_[+2]_81 chr2R:6629888-6630008 7.2e-05 34_[+2]_78 chr3R:23326829-23326949 7.2e-05 59_[+2]_53 chr3R:8821801-8821921 7.2e-05 8_[+2]_104 chr3R:30107862-30107982 7.2e-05 24_[+2]_88 chr3R:20284002-20284122 0.00012 86_[+2]_26 chr2R:21217628-21217748 0.00012 16_[+2]_96 chr3L:9689969-9690089 0.00012 82_[+2]_30 chr2L:2423087-2423207 0.00012 40_[+2]_72 chrX:16309088-16309208 0.00012 67_[+2]_45 chr3R:20274683-20274803 0.00012 14_[+2]_98 chr3R:5296810-5296930 0.00012 37_[+2]_75 chr2R:9685718-9685838 0.00012 19_[+2]_93 chr2L:8708555-8708675 0.00012 44_[+2]_68 chr3R:9917478-9917598 0.00012 88_[+2]_24 chr3L:16800525-16800645 0.00012 48_[+2]_64 chr3R:10328064-10328184 0.00012 44_[+2]_68 chr2L:18704441-18704561 0.00012 25_[+2]_87 chrX:18395242-18395362 0.00012 7_[+2]_105 chr3R:18581098-18581218 0.00012 21_[+2]_91 chr2R:18387884-18388004 0.00012 34_[+2]_78 chr3R:30352854-30352974 0.00017 33_[+2]_79 chrX:10370793-10370913 0.00017 12_[+2]_100 chr3R:23989123-23989243 0.00017 85_[+2]_27 chr2L:13900456-13900576 0.00019 61_[+2]_51 chr3L:9640840-9640960 0.00019 93_[+2]_19 chr2R:13895560-13895680 0.00019 31_[+2]_81 chr2R:21609329-21609449 0.00019 72_[+2]_40 chr3L:7858900-7859020 0.00019 68_[+2]_44 chr3L:7826875-7826995 0.00022 24_[+2]_88 chr3R:20963131-20963251 0.00022 55_[+2]_57 chr2L:8400017-8400137 0.00024 41_[+2]_71 chr3L:5642949-5643069 0.00024 83_[+2]_29 chr3R:20262087-20262207 0.00026 84_[+2]_28 chr3R:5842815-5842935 0.00028 34_[+2]_78 chr3R:9571492-9571612 0.00028 10_[+2]_102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTKWY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGTTKWY width=8 seqs=45 chr3L:5639949-5640069 ( 26) TTGTTTTC 1 chr3R:31761783-31761903 ( 24) TTGTTTTC 1 chr2L:16637414-16637534 ( 57) TTGTTTTC 1 chr3L:7831936-7832056 ( 105) TTGTTTTC 1 chr2R:14871596-14871716 ( 69) TTGTTTTC 1 chr3L:20243839-20243959 ( 58) TTGTTTTC 1 chr3R:19910433-19910553 ( 19) TTGTTTTT 1 chr3R:13032498-13032618 ( 65) TTGTTTTT 1 chrX:3708271-3708391 ( 15) TTGTTTTT 1 chr3R:12405946-12406066 ( 32) TTGTTGTC 1 chr2R:6629888-6630008 ( 35) TTGTTTTT 1 chr3R:23326829-23326949 ( 60) TTGTTTTT 1 chr3R:8821801-8821921 ( 9) TTGTTTTT 1 chr3R:30107862-30107982 ( 25) TTGTTTTT 1 chr3R:20284002-20284122 ( 87) TTGTTGTT 1 chr2R:21217628-21217748 ( 17) TTGTTTAC 1 chr3L:9689969-9690089 ( 83) TTGTTTAC 1 chr2L:2423087-2423207 ( 41) TTGTTTAC 1 chrX:16309088-16309208 ( 68) TTGTTTAC 1 chr3R:20274683-20274803 ( 15) TTGTTGTT 1 chr3R:5296810-5296930 ( 38) TTGTTGTT 1 chr2R:9685718-9685838 ( 20) TTGTTTAC 1 chr2L:8708555-8708675 ( 45) TTGTTGTT 1 chr3R:9917478-9917598 ( 89) TTGTTGTT 1 chr3L:16800525-16800645 ( 49) TTGTTTAC 1 chr3R:10328064-10328184 ( 45) TTGTTGTT 1 chr2L:18704441-18704561 ( 26) TTGTTTAC 1 chrX:18395242-18395362 ( 8) TTGTTTAC 1 chr3R:18581098-18581218 ( 22) TTGTTGTT 1 chr2R:18387884-18388004 ( 35) TTGTTTAC 1 chr3R:30352854-30352974 ( 34) TTGTTGAC 1 chrX:10370793-10370913 ( 13) TTGTTTAT 1 chr3R:23989123-23989243 ( 86) TTGTTTAT 1 chr2L:13900456-13900576 ( 62) TTGTTGAT 1 chr3L:9640840-9640960 ( 94) TTGTTGAT 1 chr2R:13895560-13895680 ( 32) TTGTTGAT 1 chr2R:21609329-21609449 ( 73) TTGTTGAT 1 chr3L:7858900-7859020 ( 69) TTGTTGAT 1 chr3L:7826875-7826995 ( 25) TTGTTTTG 1 chr3R:20963131-20963251 ( 56) TTGTTTTG 1 chr2L:8400017-8400137 ( 42) TTGTTGTG 1 chr3L:5642949-5643069 ( 84) TTGTTGTG 1 chr3R:20262087-20262207 ( 85) TTGTTTAG 1 chr3R:5842815-5842935 ( 35) TTGTTGAG 1 chr3R:9571492-9571612 ( 11) TTGTTGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTKWY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8403 E= 7.5e-002 -1214 -1214 -1214 182 -1214 -1214 -1214 182 -1214 -1214 223 -1214 -1214 -1214 -1214 182 -1214 -1214 -1214 182 -1214 -1214 90 108 62 -1214 -1214 97 -1214 83 -46 72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTKWY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 7.5e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.600000 0.444444 0.000000 0.000000 0.555556 0.000000 0.377778 0.155556 0.466667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTKWY MEME-2 regular expression -------------------------------------------------------------------------------- TTGTT[TG][TA][TC] -------------------------------------------------------------------------------- Time 14.88 secs. ******************************************************************************** ******************************************************************************** MOTIF BTGATAAG MEME-3 width = 8 sites = 30 llr = 270 E-value = 1.6e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif BTGATAAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::a:aa: pos.-specific C 42:::::: probability G 3:a::::a matrix T 28::a::: bits 2.2 * * 2.0 * * 1.8 ****** 1.6 ****** Relative 1.3 ****** Entropy 1.1 ******* (13.0 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel CTGATAAG consensus GC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTGATAAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:14356383-14356503 76 1.91e-05 TGGCGCTTGA CTGATAAG ACTCGAGACC chr2R:7714236-7714356 93 1.91e-05 AAACAATCGG CTGATAAG GGCGACACAG chr2L:11981366-11981486 37 1.91e-05 TATATATGAG CTGATAAG AGGGCACTTA chr3L:13457247-13457367 86 1.91e-05 TTTATGACGT CTGATAAG CGATCGATGG chr2R:24987640-24987760 44 1.91e-05 GCAGGAGCTG CTGATAAG GCTAGAACAC chr2R:8705494-8705614 93 1.91e-05 GCAAGAACCA CTGATAAG AAGCTGAGTA chrX:2043805-2043925 58 1.91e-05 GAGCGTTTTG CTGATAAG CGTCCAGGCA chr2R:12483978-12484098 22 1.91e-05 TCGGCGTCAC CTGATAAG GTCAATAAAA chr3L:2504345-2504465 86 1.91e-05 AAAATCAACA CTGATAAG GATGCAACAT chr3R:5843636-5843756 111 1.91e-05 AGGCGCTTCC CTGATAAG AT chr3R:30352854-30352974 103 3.82e-05 ATCCATGGGT GTGATAAG GCACCAGGGA chr2R:7726630-7726750 40 3.82e-05 AACACTCCTC GTGATAAG AGCGGCCAGA chr2L:8400017-8400137 31 3.82e-05 GTAACAATCC GTGATAAG ACTTTGTTGT chr3R:19910433-19910553 38 6.35e-05 GTTGTTGTTA TTGATAAG GCCCTTTCTC chr3L:11290207-11290327 43 6.35e-05 TGTGGGTACT TTGATAAG CAACCCGAGT chr2R:10052721-10052841 99 6.35e-05 GCTCGGTTAA TTGATAAG AACGAATTGT chr2R:22114850-22114970 63 6.35e-05 GTCAATGCAA TTGATAAG TCAATCGAAC chr2L:6089713-6089833 26 6.35e-05 TAGTTCTCGT TTGATAAG TCTGCCTAGA chr3L:5638777-5638897 18 6.35e-05 GTAAACTGCA TTGATAAG GAAAATGCTG chr2L:2371595-2371715 28 6.35e-05 TGCATTCCGG TTGATAAG GAACCACCCA chrX:17186576-17186696 13 7.79e-05 CCGTGTGCCA CCGATAAG GCAGCCAATT chr2L:1127857-1127977 105 9.23e-05 AAACCACTTG GCGATAAG CCGATGCA chr3L:11773935-11774055 67 9.23e-05 CACCTCTGCT GCGATAAG CGTGCAGTTA chr3R:21182064-21182184 47 9.23e-05 GCTTAACTGG GCGATAAG CTGCCCAGTG chr2R:16008329-16008449 34 9.23e-05 CGCTCGTCGC GCGATAAG CATCAAATCT chr2R:12642851-12642971 41 9.23e-05 TGTATCTTCG GCGATAAG AACAAGTGGG chr2L:21082736-21082856 31 9.23e-05 TCACACGTGA GCGATAAG ATAATCGCAT chr3R:27110746-27110866 112 1.37e-04 CGCAGATTAA ATGATAAG G chr2R:9792312-9792432 96 1.37e-04 ATATATAGTA ATGATAAG AGTGGCTAGT chr3R:8219999-8220119 108 1.37e-04 ACAAATCCAG ATGATAAG AACAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTGATAAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:14356383-14356503 1.9e-05 75_[+3]_37 chr2R:7714236-7714356 1.9e-05 92_[+3]_20 chr2L:11981366-11981486 1.9e-05 36_[+3]_76 chr3L:13457247-13457367 1.9e-05 85_[+3]_27 chr2R:24987640-24987760 1.9e-05 43_[+3]_69 chr2R:8705494-8705614 1.9e-05 92_[+3]_20 chrX:2043805-2043925 1.9e-05 57_[+3]_55 chr2R:12483978-12484098 1.9e-05 21_[+3]_91 chr3L:2504345-2504465 1.9e-05 85_[+3]_27 chr3R:5843636-5843756 1.9e-05 110_[+3]_2 chr3R:30352854-30352974 3.8e-05 102_[+3]_10 chr2R:7726630-7726750 3.8e-05 39_[+3]_73 chr2L:8400017-8400137 3.8e-05 30_[+3]_82 chr3R:19910433-19910553 6.4e-05 37_[+3]_75 chr3L:11290207-11290327 6.4e-05 42_[+3]_70 chr2R:10052721-10052841 6.4e-05 98_[+3]_14 chr2R:22114850-22114970 6.4e-05 62_[+3]_50 chr2L:6089713-6089833 6.4e-05 25_[+3]_87 chr3L:5638777-5638897 6.4e-05 17_[+3]_95 chr2L:2371595-2371715 6.4e-05 27_[+3]_85 chrX:17186576-17186696 7.8e-05 12_[+3]_100 chr2L:1127857-1127977 9.2e-05 104_[+3]_8 chr3L:11773935-11774055 9.2e-05 66_[+3]_46 chr3R:21182064-21182184 9.2e-05 46_[+3]_66 chr2R:16008329-16008449 9.2e-05 33_[+3]_79 chr2R:12642851-12642971 9.2e-05 40_[+3]_72 chr2L:21082736-21082856 9.2e-05 30_[+3]_82 chr3R:27110746-27110866 0.00014 111_[+3]_1 chr2R:9792312-9792432 0.00014 95_[+3]_17 chr3R:8219999-8220119 0.00014 107_[+3]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTGATAAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BTGATAAG width=8 seqs=30 chr2L:14356383-14356503 ( 76) CTGATAAG 1 chr2R:7714236-7714356 ( 93) CTGATAAG 1 chr2L:11981366-11981486 ( 37) CTGATAAG 1 chr3L:13457247-13457367 ( 86) CTGATAAG 1 chr2R:24987640-24987760 ( 44) CTGATAAG 1 chr2R:8705494-8705614 ( 93) CTGATAAG 1 chrX:2043805-2043925 ( 58) CTGATAAG 1 chr2R:12483978-12484098 ( 22) CTGATAAG 1 chr3L:2504345-2504465 ( 86) CTGATAAG 1 chr3R:5843636-5843756 ( 111) CTGATAAG 1 chr3R:30352854-30352974 ( 103) GTGATAAG 1 chr2R:7726630-7726750 ( 40) GTGATAAG 1 chr2L:8400017-8400137 ( 31) GTGATAAG 1 chr3R:19910433-19910553 ( 38) TTGATAAG 1 chr3L:11290207-11290327 ( 43) TTGATAAG 1 chr2R:10052721-10052841 ( 99) TTGATAAG 1 chr2R:22114850-22114970 ( 63) TTGATAAG 1 chr2L:6089713-6089833 ( 26) TTGATAAG 1 chr3L:5638777-5638897 ( 18) TTGATAAG 1 chr2L:2371595-2371715 ( 28) TTGATAAG 1 chrX:17186576-17186696 ( 13) CCGATAAG 1 chr2L:1127857-1127977 ( 105) GCGATAAG 1 chr3L:11773935-11774055 ( 67) GCGATAAG 1 chr3R:21182064-21182184 ( 47) GCGATAAG 1 chr2R:16008329-16008449 ( 34) GCGATAAG 1 chr2R:12642851-12642971 ( 41) GCGATAAG 1 chr2L:21082736-21082856 ( 31) GCGATAAG 1 chr3R:27110746-27110866 ( 112) ATGATAAG 1 chr2R:9792312-9792432 ( 96) ATGATAAG 1 chr3R:8219999-8220119 ( 108) ATGATAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTGATAAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1531 E= 1.6e-001 -154 78 49 -28 -1155 13 -1155 144 -1155 -1155 223 -1155 179 -1155 -1155 -1155 -1155 -1155 -1155 182 179 -1155 -1155 -1155 179 -1155 -1155 -1155 -1155 -1155 223 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTGATAAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 1.6e-001 0.100000 0.366667 0.300000 0.233333 0.000000 0.233333 0.000000 0.766667 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTGATAAG MEME-3 regular expression -------------------------------------------------------------------------------- [CGT][TC]GATAAG -------------------------------------------------------------------------------- Time 21.06 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCATTSA MEME-4 width = 8 sites = 22 llr = 204 E-value = 5.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCATTSA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a:::a pos.-specific C :2a:::5: probability G ::::::5: matrix T a8::aa:: bits 2.2 * 2.0 * 1.8 **** * 1.6 * **** * Relative 1.3 * ****** Entropy 1.1 ******** (13.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCATTCA consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATTSA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:16637414-16637534 93 4.91e-05 TTCTCCCTTG TTCATTCA TAAATACGCG chr3R:30352854-30352974 86 4.91e-05 TCGGTTGAGG TTCATTGA TCCATGGGTG chr3R:16155968-16156088 68 4.91e-05 TTCTGTTCGG TTCATTGA TAAAAGCTCG chrX:12801350-12801470 7 4.91e-05 TACGCT TTCATTGA GTGGAAATTC chr2R:8705494-8705614 11 4.91e-05 TATAAATAAG TTCATTCA TGAGCGATAG chr3R:8809831-8809951 93 4.91e-05 CGATAACAGA TTCATTCA CATTCAATGA chr2L:8202747-8202867 48 4.91e-05 ACGTCCTCCG TTCATTGA TTGGACAAAA chr2L:6089713-6089833 65 4.91e-05 AGCGTACAAT TTCATTGA GGGACATCCT chr3R:20839008-20839128 14 4.91e-05 TGCGCTCATT TTCATTGA ACTAATTGAT chr2R:6142701-6142821 101 4.91e-05 GAAATTCCAT TTCATTCA GAATGCGCCG chr3L:633349-633469 47 4.91e-05 GCCTGCGATT TTCATTCA TTAAATGCAA chr2R:13895560-13895680 48 4.91e-05 ATTCACTTAA TTCATTCA CTAGATTCAG chr2R:12438003-12438123 63 4.91e-05 GCGCACAGTG TTCATTCA TAAAAAGTGT chr3L:8071357-8071477 79 4.91e-05 CAGCGGACAA TTCATTGA TAAAAAACGT chr2L:11844366-11844486 33 4.91e-05 TGCAAATAGC TTCATTCA ATGCTAATTA chr2R:18387884-18388004 50 4.91e-05 TACGCTCAAT TTCATTGA GAACGTCGCA chr2L:14356383-14356503 35 8.60e-05 GTACTTCGCC TCCATTGA TTGCTCCACT chr2R:10553105-10553225 42 8.60e-05 TGTGTGTGCA TCCATTGA AGGGCTTCGC chr2L:1708248-1708368 8 8.60e-05 TCGCAGC TCCATTCA TGCTAATCAA chrX:6346255-6346375 68 8.60e-05 GCAAAAACTT TCCATTCA TGGGAATTCG chr2L:16317269-16317389 58 8.60e-05 ACCCCGCCTT TCCATTCA CCAACATCAA chr2L:13900250-13900370 41 1.23e-04 AGTCATCCAA CTCATTGA GCACTAAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATTSA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:16637414-16637534 4.9e-05 92_[+4]_20 chr3R:30352854-30352974 4.9e-05 85_[+4]_27 chr3R:16155968-16156088 4.9e-05 67_[+4]_45 chrX:12801350-12801470 4.9e-05 6_[+4]_106 chr2R:8705494-8705614 4.9e-05 10_[+4]_102 chr3R:8809831-8809951 4.9e-05 92_[+4]_20 chr2L:8202747-8202867 4.9e-05 47_[+4]_65 chr2L:6089713-6089833 4.9e-05 64_[+4]_48 chr3R:20839008-20839128 4.9e-05 13_[+4]_99 chr2R:6142701-6142821 4.9e-05 100_[+4]_12 chr3L:633349-633469 4.9e-05 46_[+4]_66 chr2R:13895560-13895680 4.9e-05 47_[+4]_65 chr2R:12438003-12438123 4.9e-05 62_[+4]_50 chr3L:8071357-8071477 4.9e-05 78_[+4]_34 chr2L:11844366-11844486 4.9e-05 32_[+4]_80 chr2R:18387884-18388004 4.9e-05 49_[+4]_63 chr2L:14356383-14356503 8.6e-05 34_[+4]_78 chr2R:10553105-10553225 8.6e-05 41_[+4]_71 chr2L:1708248-1708368 8.6e-05 7_[+4]_105 chrX:6346255-6346375 8.6e-05 67_[+4]_45 chr2L:16317269-16317389 8.6e-05 57_[+4]_55 chr2L:13900250-13900370 0.00012 40_[+4]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATTSA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCATTSA width=8 seqs=22 chr2L:16637414-16637534 ( 93) TTCATTCA 1 chr3R:30352854-30352974 ( 86) TTCATTGA 1 chr3R:16155968-16156088 ( 68) TTCATTGA 1 chrX:12801350-12801470 ( 7) TTCATTGA 1 chr2R:8705494-8705614 ( 11) TTCATTCA 1 chr3R:8809831-8809951 ( 93) TTCATTCA 1 chr2L:8202747-8202867 ( 48) TTCATTGA 1 chr2L:6089713-6089833 ( 65) TTCATTGA 1 chr3R:20839008-20839128 ( 14) TTCATTGA 1 chr2R:6142701-6142821 ( 101) TTCATTCA 1 chr3L:633349-633469 ( 47) TTCATTCA 1 chr2R:13895560-13895680 ( 48) TTCATTCA 1 chr2R:12438003-12438123 ( 63) TTCATTCA 1 chr3L:8071357-8071477 ( 79) TTCATTGA 1 chr2L:11844366-11844486 ( 33) TTCATTCA 1 chr2R:18387884-18388004 ( 50) TTCATTGA 1 chr2L:14356383-14356503 ( 35) TCCATTGA 1 chr2R:10553105-10553225 ( 42) TCCATTGA 1 chr2L:1708248-1708368 ( 8) TCCATTCA 1 chrX:6346255-6346375 ( 68) TCCATTCA 1 chr2L:16317269-16317389 ( 58) TCCATTCA 1 chr2L:13900250-13900370 ( 41) CTCATTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATTSA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.87754 E= 5.6e+002 -1110 -223 -1110 175 -1110 9 -1110 145 -1110 223 -1110 -1110 179 -1110 -1110 -1110 -1110 -1110 -1110 182 -1110 -1110 -1110 182 -1110 123 123 -1110 179 -1110 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATTSA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 5.6e+002 0.000000 0.045455 0.000000 0.954545 0.000000 0.227273 0.000000 0.772727 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATTSA MEME-4 regular expression -------------------------------------------------------------------------------- T[TC]CATT[CG]A -------------------------------------------------------------------------------- Time 27.18 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCTTATC MEME-5 width = 8 sites = 7 llr = 78 E-value = 9.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCTTATC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C a:a::::a probability G :a:::::: matrix T :::aa:a: bits 2.2 *** * 2.0 *** * 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCTTATC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTTATC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14912272-14912392 26 1.36e-05 CATTTAGTCA CGCTTATC AAGCTGAAAA chr3R:27110746-27110866 10 1.36e-05 AGATATTTT CGCTTATC GCCGATCCTA chr2R:12642851-12642971 111 1.36e-05 CGTTGCAGTA CGCTTATC TG chrX:13651329-13651449 58 1.36e-05 CAACCCCAAC CGCTTATC TCTGAGAAAT chr3R:8809831-8809951 39 1.36e-05 TCGACATCGA CGCTTATC AAACCACGGG chr3L:7520817-7520937 1 1.36e-05 . CGCTTATC ACCTACGAAG chr2L:7794821-7794941 8 1.36e-05 AGTGCCC CGCTTATC TATTCTATTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTTATC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14912272-14912392 1.4e-05 25_[+5]_87 chr3R:27110746-27110866 1.4e-05 9_[+5]_103 chr2R:12642851-12642971 1.4e-05 110_[+5]_2 chrX:13651329-13651449 1.4e-05 57_[+5]_55 chr3R:8809831-8809951 1.4e-05 38_[+5]_74 chr3L:7520817-7520937 1.4e-05 [+5]_112 chr2L:7794821-7794941 1.4e-05 7_[+5]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTTATC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCTTATC width=8 seqs=7 chr2R:14912272-14912392 ( 26) CGCTTATC 1 chr3R:27110746-27110866 ( 10) CGCTTATC 1 chr2R:12642851-12642971 ( 111) CGCTTATC 1 chrX:13651329-13651449 ( 58) CGCTTATC 1 chr3R:8809831-8809951 ( 39) CGCTTATC 1 chr3L:7520817-7520937 ( 1) CGCTTATC 1 chr2L:7794821-7794941 ( 8) CGCTTATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTTATC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 9.3e+003 -945 223 -945 -945 -945 -945 222 -945 -945 223 -945 -945 -945 -945 -945 182 -945 -945 -945 182 178 -945 -945 -945 -945 -945 -945 182 -945 223 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTTATC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 9.3e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTTATC MEME-5 regular expression -------------------------------------------------------------------------------- CGCTTATC -------------------------------------------------------------------------------- Time 33.31 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13091998-13092118 8.63e-01 120 chr2R:13501210-13501330 7.07e-01 120 chr3L:18087425-18087545 9.48e-02 12_[+1(2.59e-05)]_100 chr2R:15221541-15221661 5.99e-01 120 chr2R:13605599-13605719 4.20e-02 38_[+1(2.59e-05)]_74 chr2R:18387884-18388004 6.41e-03 49_[+4(4.91e-05)]_63 chrX:16946743-16946863 1.91e-01 120 chrX:13125705-13125825 1.83e-01 80_[+1(4.51e-05)]_32 chr2L:3164610-3164730 1.42e-01 120 chr2L:11844366-11844486 2.43e-02 32_[+4(4.91e-05)]_80 chr2L:7794821-7794941 1.84e-02 7_[+5(1.36e-05)]_105 chr3L:3140534-3140654 3.05e-02 33_[+1(2.59e-05)]_79 chr2R:9140778-9140898 6.47e-01 120 chr3R:15547344-15547464 9.13e-02 120 chr3R:30107862-30107982 2.74e-01 24_[+2(7.22e-05)]_88 chr2R:24749831-24749951 5.77e-01 120 chr2L:10532132-10532252 4.09e-01 120 chr3L:16843091-16843211 2.01e-01 120 chr3R:5843636-5843756 2.53e-02 110_[+3(1.91e-05)]_2 chr3L:20243839-20243959 5.59e-02 57_[+2(2.34e-05)]_55 chr3R:20963131-20963251 2.43e-02 120 chr3L:7858900-7859020 5.46e-02 120 chr2R:21609329-21609449 1.45e-02 120 chr3L:8071357-8071477 6.22e-02 78_[+4(4.91e-05)]_34 chr2R:22597919-22598039 1.51e-02 55_[+1(4.51e-05)]_57 chr2L:2371595-2371715 2.20e-02 27_[+3(6.35e-05)]_85 chr3R:18581098-18581218 5.72e-02 120 chr3R:8219999-8220119 2.98e-02 120 chr3R:9571492-9571612 4.77e-02 120 chr3R:27553539-27553659 1.45e-01 120 chr2R:12438003-12438123 8.40e-02 62_[+4(4.91e-05)]_50 chr3L:17584937-17585057 9.71e-01 120 chr2R:13544091-13544211 4.34e-03 50_[+1(4.51e-05)]_62 chr3R:23989123-23989243 2.86e-02 120 chr3R:8821801-8821921 1.13e-01 8_[+2(7.22e-05)]_104 chr3L:5753761-5753881 2.47e-02 120 chr2R:13895560-13895680 3.72e-02 47_[+4(4.91e-05)]_65 chr2R:22220893-22221013 5.64e-01 120 chr3R:30779368-30779488 4.81e-01 120 chr2R:14871596-14871716 4.43e-02 68_[+2(2.34e-05)]_44 chr3R:14226844-14226964 2.73e-01 120 chr2L:2728557-2728677 1.42e-01 120 chr3L:633349-633469 2.76e-02 46_[+4(4.91e-05)]_66 chr2L:8700771-8700891 3.04e-01 120 chr3L:217676-217796 4.11e-01 120 chr3L:21501306-21501426 1.95e-01 120 chr3L:9640840-9640960 1.98e-03 55_[+1(2.59e-05)]_57 chr3L:12411460-12411580 4.63e-01 120 chr2R:21380223-21380343 7.65e-03 62_[+1(2.59e-05)]_50 chr3L:5638777-5638897 4.63e-02 17_[+3(6.35e-05)]_95 chr3L:7520817-7520937 1.12e-02 [+5(1.36e-05)]_112 chr2R:21193922-21194042 1.95e-01 120 chr3R:5842815-5842935 4.43e-01 120 chr2L:9785316-9785436 3.00e-01 100_[+1(7.09e-05)]_12 chr2R:6142701-6142821 2.30e-02 100_[+4(4.91e-05)]_12 chr3L:21936302-21936422 4.71e-01 120 chr2L:10147764-10147884 2.32e-01 120 chr3L:8101712-8101832 1.58e-01 104_[+1(2.59e-05)]_8 chr3R:9570752-9570872 1.15e-01 120 chr3R:17060940-17061060 6.34e-01 120 chr2L:16317269-16317389 7.09e-02 57_[+4(8.60e-05)]_55 chr2L:85874-85994 7.28e-01 120 chr2R:7253030-7253150 8.92e-03 70_[+1(2.59e-05)]_42 chr3R:20658817-20658937 8.11e-01 120 chr3R:23326829-23326949 2.78e-03 48_[+1(2.59e-05)]_3_[+2(7.22e-05)]_\ 53 chr2R:23680358-23680478 2.58e-01 120 chr2L:20673873-20673993 9.72e-01 120 chr3L:14557225-14557345 4.82e-01 120 chr2R:15143792-15143912 1.52e-02 92_[+1(2.59e-05)]_20 chr3R:20839008-20839128 1.65e-02 13_[+4(4.91e-05)]_99 chr3L:9847055-9847175 3.18e-01 120 chr2L:9333429-9333549 1.37e-01 8_[+1(2.59e-05)]_104 chrX:18395242-18395362 2.06e-01 120 chr2L:6089713-6089833 1.97e-03 25_[+3(6.35e-05)]_31_[+4(4.91e-05)]_\ 48 chrX:10719438-10719558 9.03e-01 120 chr2R:17574807-17574927 6.49e-01 120 chr3L:44139-44259 6.77e-01 120 chr2R:6629888-6630008 1.49e-01 34_[+2(7.22e-05)]_78 chr2R:11715667-11715787 9.90e-01 120 chr2R:21688415-21688535 1.21e-01 [+1(4.51e-05)]_112 chr3L:5642949-5643069 5.07e-01 120 chr3R:27954576-27954696 9.59e-01 120 chr2L:8202747-8202867 6.73e-02 47_[+4(4.91e-05)]_65 chr3L:7826875-7826995 4.87e-01 120 chr3R:12303066-12303186 1.30e-01 10_[+1(9.00e-05)]_102 chr3R:11196040-11196160 7.74e-01 120 chrX:18368766-18368886 7.90e-01 120 chr3L:9391753-9391873 1.74e-01 120 chr3R:10393438-10393558 3.23e-01 120 chr2L:21082736-21082856 2.46e-01 30_[+3(9.23e-05)]_82 chrX:9865010-9865130 2.19e-01 120 chr3L:15515194-15515314 4.73e-01 120 chr2L:18704441-18704561 6.62e-02 120 chr3L:14006013-14006133 3.18e-01 120 chr3R:31778998-31779118 3.66e-01 120 chr2L:8400017-8400137 3.51e-03 30_[+3(3.82e-05)]_82 chr3L:20317929-20318049 1.71e-01 120 chrX:10370793-10370913 2.17e-01 120 chrX:21276644-21276764 6.84e-01 120 chr3L:8726321-8726441 3.48e-01 120 chr3L:14609417-14609537 4.96e-01 120 chr3R:8809831-8809951 5.26e-04 38_[+5(1.36e-05)]_46_[+4(4.91e-05)]_\ 20 chr2R:22114850-22114970 1.00e-02 62_[+3(6.35e-05)]_50 chr3R:12405946-12406066 1.17e-01 31_[+2(7.22e-05)]_51_[+2(7.22e-05)]_\ 22 chr3L:2504345-2504465 2.30e-02 85_[+3(1.91e-05)]_27 chr3L:7790384-7790504 9.61e-01 120 chr2R:11104830-11104950 2.36e-01 120 chr2L:8131195-8131315 4.11e-01 120 chr3R:9532558-9532678 9.78e-01 120 chr3R:10328064-10328184 3.40e-01 120 chr3L:7829736-7829856 8.25e-01 120 chr2R:12483978-12484098 3.41e-03 21_[+3(1.91e-05)]_16_[+1(7.09e-05)]_\ 67 chr3L:7775507-7775627 7.07e-01 120 chrX:2043805-2043925 6.33e-04 23_[+1(2.59e-05)]_26_[+3(1.91e-05)]_\ 55 chr3L:16384281-16384401 7.04e-01 120 chr2R:8705494-8705614 5.63e-03 10_[+4(4.91e-05)]_74_[+3(1.91e-05)]_\ 20 chrX:12801350-12801470 5.50e-02 6_[+4(4.91e-05)]_106 chr3R:27954781-27954901 6.58e-01 120 chr3R:20584307-20584427 1.48e-01 120 chr3L:9846277-9846397 7.12e-02 40_[+1(7.09e-05)]_72 chr2L:13900250-13900370 1.85e-01 120 chr2R:13228813-13228933 8.73e-01 120 chr2L:12619994-12620114 1.04e-01 120 chr3L:3437798-3437918 1.64e-01 120 chr3L:16800525-16800645 1.16e-01 120 chr3L:18642183-18642303 8.05e-01 120 chr2R:21298061-21298181 4.41e-01 120 chr2L:10411891-10412011 6.56e-01 120 chrX:8037489-8037609 5.09e-01 120 chr2L:142574-142694 5.12e-01 120 chrX:6346255-6346375 2.59e-02 67_[+4(8.60e-05)]_45 chr3L:9717270-9717390 1.56e-01 120 chr3R:9420578-9420698 3.22e-01 120 chr2R:24987640-24987760 3.89e-02 43_[+3(1.91e-05)]_69 chrX:3708271-3708391 1.42e-04 14_[+2(7.22e-05)]_62_[+1(2.59e-05)]_\ 28 chrX:10845359-10845479 3.78e-01 120 chr2R:19480519-19480639 5.29e-01 120 chr3L:13457247-13457367 7.03e-02 85_[+3(1.91e-05)]_27 chr2L:13088624-13088744 3.20e-01 120 chr2L:16886523-16886643 3.02e-02 120 chr3R:9917478-9917598 9.13e-03 120 chr3R:8739976-8740096 4.30e-01 120 chr2R:19466178-19466298 9.91e-01 120 chr3R:20262087-20262207 9.74e-03 120 chr2L:8708555-8708675 9.69e-03 86_[+1(2.59e-05)]_26 chrX:3442683-3442803 1.21e-01 34_[+4(4.91e-05)]_78 chr3L:17622588-17622708 8.43e-01 120 chr2R:21290480-21290600 2.38e-01 120 chr3L:7831936-7832056 7.65e-03 104_[+2(2.34e-05)]_8 chr3R:24264750-24264870 7.52e-01 120 chrX:13651329-13651449 1.33e-02 57_[+5(1.36e-05)]_55 chr2R:7726630-7726750 2.31e-01 39_[+3(3.82e-05)]_73 chr2L:13900456-13900576 7.18e-02 120 chr3R:29926223-29926343 3.81e-01 120 chr3L:8731632-8731752 7.86e-02 120 chr2R:10052721-10052841 1.06e-02 98_[+3(6.35e-05)]_14 chr3L:3344016-3344136 6.40e-01 120 chr2L:11981366-11981486 4.28e-02 36_[+3(1.91e-05)]_76 chr2R:9685718-9685838 9.89e-02 120 chr2R:17442833-17442953 3.78e-01 120 chr3R:10404054-10404174 2.20e-01 120 chr2R:9792312-9792432 2.14e-01 120 chrX:17186576-17186696 6.78e-02 12_[+3(7.79e-05)]_71_[+3(7.79e-05)]_\ 21 chr3L:4130882-4131002 9.27e-01 120 chr3L:14783344-14783464 8.11e-01 120 chr2L:7793311-7793431 6.55e-01 120 chr3R:30105218-30105338 9.24e-01 120 chrX:11561571-11561691 2.39e-01 120 chr3R:8823175-8823295 4.54e-01 120 chr2R:12642851-12642971 2.37e-03 40_[+3(9.23e-05)]_62_[+5(1.36e-05)]_\ 2 chr3R:16155968-16156088 1.39e-02 67_[+4(4.91e-05)]_45 chr3R:5296810-5296930 8.56e-03 120 chr2R:10418517-10418637 4.21e-01 120 chr2R:7714236-7714356 3.39e-03 76_[+1(2.59e-05)]_8_[+3(1.91e-05)]_\ 20 chr3R:15535363-15535483 9.18e-01 120 chr2R:9190884-9191004 9.99e-01 120 chr2R:16008329-16008449 3.12e-02 33_[+3(9.23e-05)]_79 chr3R:20274683-20274803 3.54e-01 120 chr3R:21182064-21182184 5.05e-02 46_[+3(9.23e-05)]_66 chrX:16309088-16309208 1.34e-01 120 chr3L:4286393-4286513 8.94e-01 120 chrX:2339460-2339580 7.40e-01 120 chr3R:30012923-30013043 2.72e-01 120 chr3R:16190858-16190978 8.00e-01 120 chr3L:18810627-18810747 8.32e-01 120 chr2L:1708248-1708368 5.70e-02 7_[+4(8.60e-05)]_105 chr3L:8185401-8185521 3.40e-01 43_[+1(9.00e-05)]_69 chr2R:11425278-11425398 6.89e-02 120 chr2R:5957567-5957687 1.79e-01 120 chr3R:19925686-19925806 8.43e-01 120 chr3R:8663517-8663637 7.46e-01 120 chr2L:2423087-2423207 1.49e-01 120 chr3R:30352854-30352974 4.54e-05 85_[+4(4.91e-05)]_9_[+3(3.82e-05)]_\ 10 chr3L:9689969-9690089 2.13e-01 120 chr3R:27110746-27110866 3.68e-04 9_[+5(1.36e-05)]_103 chr2L:9530090-9530210 7.82e-01 120 chr3L:7792742-7792862 4.87e-01 120 chr3R:10759532-10759652 2.34e-02 69_[+1(2.59e-05)]_43 chr2L:18329757-18329877 8.31e-01 120 chr3R:19132549-19132669 5.44e-01 120 chr2L:5341166-5341286 6.13e-01 120 chr3L:19606253-19606373 8.94e-01 120 chr3R:23317048-23317168 5.79e-01 120 chr3L:12184601-12184721 9.81e-01 120 chrX:8159528-8159648 5.66e-01 120 chr3R:13032498-13032618 4.45e-02 64_[+2(7.22e-05)]_48 chr3R:19051451-19051571 3.79e-01 120 chr3R:8353349-8353469 7.46e-01 120 chr3L:11773935-11774055 1.57e-01 66_[+3(9.23e-05)]_46 chr2R:7721005-7721125 8.13e-01 120 chr2R:21079385-21079505 7.09e-01 120 chr3L:11290207-11290327 6.12e-02 42_[+3(6.35e-05)]_70 chr2L:5332740-5332860 1.00e+00 120 chr2R:10553105-10553225 9.08e-02 41_[+4(8.60e-05)]_71 chr3R:14747260-14747380 3.97e-01 120 chr3R:20546828-20546948 9.70e-01 120 chr2L:16637414-16637534 1.25e-03 56_[+2(2.34e-05)]_28_[+4(4.91e-05)]_\ 20 chr2L:5334750-5334870 5.32e-02 120 chr2R:17133988-17134108 9.36e-01 120 chr2R:21217628-21217748 5.01e-02 120 chr3R:10762573-10762693 8.09e-02 120 chr3R:30282806-30282926 3.52e-01 120 chr2L:13069137-13069257 9.21e-01 120 chr2L:1127857-1127977 3.36e-01 104_[+3(9.23e-05)]_8 chr3L:11213774-11213894 3.43e-01 120 chr2L:14356383-14356503 1.01e-03 34_[+4(8.60e-05)]_33_[+3(1.91e-05)]_\ 37 chr2L:16522375-16522495 9.31e-01 120 chr3R:18398188-18398308 9.80e-02 120 chr3R:31761783-31761903 6.52e-03 23_[+2(2.34e-05)]_89 chr3L:14986126-14986246 8.04e-01 120 chr2R:14873447-14873567 5.01e-01 120 chr2L:8955749-8955869 4.03e-02 120 chr2R:14912272-14912392 1.18e-03 25_[+5(1.36e-05)]_87 chr3L:3415737-3415857 9.01e-02 31_[+1(4.51e-05)]_81 chr3L:15980051-15980171 6.44e-01 120 chr2L:120688-120808 7.77e-01 120 chr2L:16888873-16888993 2.67e-01 120 chr3R:20284002-20284122 4.32e-02 120 chr2L:9232238-9232358 1.70e-01 120 chr3R:19873477-19873597 9.78e-01 120 chr2R:18409070-18409190 9.97e-01 120 chr2L:3308932-3309052 9.26e-01 120 chr2L:16276982-16277102 5.52e-01 120 chr3L:2599203-2599323 9.83e-01 120 chr3L:2600659-2600779 6.70e-01 120 chr2L:8768844-8768964 3.09e-01 120 chr3R:11154716-11154836 5.92e-01 120 chr2R:11216429-11216549 3.47e-01 120 chr3L:5639949-5640069 4.53e-02 25_[+2(2.34e-05)]_87 chr3R:19910433-19910553 2.39e-03 18_[+2(7.22e-05)]_11_[+3(6.35e-05)]_\ 75 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************