******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/chn.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:21131597-21131717 1.0000 120 chr3L:13666866-13666986 1.0000 120 chr3R:17604728-17604848 1.0000 120 chr2R:15129702-15129822 1.0000 120 chr2L:11516726-11516846 1.0000 120 chrX:10822196-10822316 1.0000 120 chr2R:15135535-15135655 1.0000 120 chr3R:31945738-31945858 1.0000 120 chr3L:15514568-15514688 1.0000 120 chr3R:8707298-8707418 1.0000 120 chr3R:11735564-11735684 1.0000 120 chrX:16150834-16150954 1.0000 120 chr2R:17870229-17870349 1.0000 120 chr2R:14008409-14008529 1.0000 120 chr2R:16517139-16517259 1.0000 120 chr3R:23730180-23730300 1.0000 120 chr3R:31086492-31086612 1.0000 120 chr2R:15132449-15132569 1.0000 120 chr2R:15130863-15130983 1.0000 120 chr3L:753949-754069 1.0000 120 chr2L:4810420-4810540 1.0000 120 chrX:8671473-8671593 1.0000 120 chr3L:199270-199390 1.0000 120 chr3R:8008021-8008141 1.0000 120 chrX:1234049-1234169 1.0000 120 chr2R:15129915-15130035 1.0000 120 chr2R:25061731-25061851 1.0000 120 chr3L:6742313-6742433 1.0000 120 chr2R:15117578-15117698 1.0000 120 chr2R:22242887-22243007 1.0000 120 chr2L:18732957-18733077 1.0000 120 chr2R:20572599-20572719 1.0000 120 chr3R:15920822-15920942 1.0000 120 chr2L:18505658-18505778 1.0000 120 chr3R:7109938-7110058 1.0000 120 chr3L:18748585-18748705 1.0000 120 chr3R:8808183-8808303 1.0000 120 chr3R:15286760-15286880 1.0000 120 chr3L:9854047-9854167 1.0000 120 chr2L:19233487-19233607 1.0000 120 chr2L:21096616-21096736 1.0000 120 chr2R:17420059-17420179 1.0000 120 chr2L:7149059-7149179 1.0000 120 chr3R:12449798-12449918 1.0000 120 chr3L:14028589-14028709 1.0000 120 chr2R:15094734-15094854 1.0000 120 chr2L:5907280-5907400 1.0000 120 chr3R:4804996-4805116 1.0000 120 chrX:6853554-6853674 1.0000 120 chr3L:12627831-12627951 1.0000 120 chr3R:31725642-31725762 1.0000 120 chr2L:3819047-3819167 1.0000 120 chr2L:2749523-2749643 1.0000 120 chr3R:15816389-15816509 1.0000 120 chrX:16216963-16217083 1.0000 120 chr2R:15100684-15100804 1.0000 120 chr2L:5978907-5979027 1.0000 120 chr2R:19311003-19311123 1.0000 120 chrX:7166460-7166580 1.0000 120 chr2L:8415201-8415321 1.0000 120 chr3L:18357788-18357908 1.0000 120 chr3R:30765660-30765780 1.0000 120 chrX:9152196-9152316 1.0000 120 chr2L:6455299-6455419 1.0000 120 chr3R:30134557-30134677 1.0000 120 chr2L:16271513-16271633 1.0000 120 chr3L:9360252-9360372 1.0000 120 chr3R:15089392-15089512 1.0000 120 chr3R:4911154-4911274 1.0000 120 chr3L:15234618-15234738 1.0000 120 chr2R:6746270-6746390 1.0000 120 chr3R:10579707-10579827 1.0000 120 chr2R:24744314-24744434 1.0000 120 chr2L:4055451-4055571 1.0000 120 chr2L:4224199-4224319 1.0000 120 chrX:771776-771896 1.0000 120 chr2L:155487-155607 1.0000 120 chrX:18910983-18911103 1.0000 120 chr2L:19452572-19452692 1.0000 120 chr3R:13885177-13885297 1.0000 120 chr2L:7295094-7295214 1.0000 120 chr3L:4407842-4407962 1.0000 120 chrX:3538860-3538980 1.0000 120 chrX:1399727-1399847 1.0000 120 chrX:5770898-5771018 1.0000 120 chr2R:21470587-21470707 1.0000 120 chr2R:8659694-8659814 1.0000 120 chr2L:9158424-9158544 1.0000 120 chr2R:17869385-17869505 1.0000 120 chrX:7307675-7307795 1.0000 120 chr3R:4852404-4852524 1.0000 120 chr3R:26010731-26010851 1.0000 120 chr3L:3843105-3843225 1.0000 120 chr3L:4532097-4532217 1.0000 120 chr2L:3581055-3581175 1.0000 120 chr2L:838153-838273 1.0000 120 chr3L:9447003-9447123 1.0000 120 chr3R:31713418-31713538 1.0000 120 chr2R:15611049-15611169 1.0000 120 chr3L:11429797-11429917 1.0000 120 chr2L:8478087-8478207 1.0000 120 chr3R:16309369-16309489 1.0000 120 chr2L:6047919-6048039 1.0000 120 chr2L:18150537-18150657 1.0000 120 chr3L:699744-699864 1.0000 120 chr3R:30338243-30338363 1.0000 120 chr2L:12093701-12093821 1.0000 120 chr3R:13952394-13952514 1.0000 120 chr3L:18771873-18771993 1.0000 120 chr2L:1145102-1145222 1.0000 120 chr3R:8923037-8923157 1.0000 120 chr2R:12173506-12173626 1.0000 120 chrX:13128102-13128222 1.0000 120 chr3R:14575888-14576008 1.0000 120 chr3L:2377485-2377605 1.0000 120 chr2R:7418665-7418785 1.0000 120 chr2L:6091481-6091601 1.0000 120 chr3R:25888987-25889107 1.0000 120 chr2L:7635354-7635474 1.0000 120 chr3L:14451682-14451802 1.0000 120 chr2R:21527481-21527601 1.0000 120 chrX:10601677-10601797 1.0000 120 chr2L:19121154-19121274 1.0000 120 chrX:17229928-17230048 1.0000 120 chr3R:4835424-4835544 1.0000 120 chr2L:13512980-13513100 1.0000 120 chrX:17780428-17780548 1.0000 120 chr3L:12124258-12124378 1.0000 120 chr3L:21049554-21049674 1.0000 120 chr3L:12850048-12850168 1.0000 120 chr2L:5944738-5944858 1.0000 120 chr2R:16552014-16552134 1.0000 120 chr2R:14411667-14411787 1.0000 120 chr3L:16760441-16760561 1.0000 120 chr2L:11338329-11338449 1.0000 120 chr2R:20835813-20835933 1.0000 120 chr3R:26566956-26567076 1.0000 120 chr3R:23300776-23300896 1.0000 120 chr2R:17683775-17683895 1.0000 120 chr2R:21475096-21475216 1.0000 120 chr2R:9955211-9955331 1.0000 120 chrX:2790263-2790383 1.0000 120 chr2L:10276999-10277119 1.0000 120 chr3L:19170573-19170693 1.0000 120 chr2R:22450512-22450632 1.0000 120 chrX:10744497-10744617 1.0000 120 chr2R:5726944-5727064 1.0000 120 chr3R:23303358-23303478 1.0000 120 chr2L:3803796-3803916 1.0000 120 chr2R:12586905-12587025 1.0000 120 chr2L:8543294-8543414 1.0000 120 chr2R:7939131-7939251 1.0000 120 chr3L:21175701-21175821 1.0000 120 chrX:16781264-16781384 1.0000 120 chr3L:13044408-13044528 1.0000 120 chr2L:3058815-3058935 1.0000 120 chrX:16149156-16149276 1.0000 120 chrX:10600672-10600792 1.0000 120 chr2R:16731320-16731440 1.0000 120 chr2L:18947572-18947692 1.0000 120 chr2L:12010264-12010384 1.0000 120 chr3R:9038833-9038953 1.0000 120 chrX:15333352-15333472 1.0000 120 chrX:19298960-19299080 1.0000 120 chr3R:10648947-10649067 1.0000 120 chr2R:8018865-8018985 1.0000 120 chr2L:478756-478876 1.0000 120 chr2L:12003507-12003627 1.0000 120 chr3R:9704748-9704868 1.0000 120 chr2R:9116510-9116630 1.0000 120 chr2L:22168574-22168694 1.0000 120 chr2R:16202915-16203035 1.0000 120 chr3R:25661666-25661786 1.0000 120 chr2R:18277197-18277317 1.0000 120 chr2R:10439010-10439130 1.0000 120 chr2R:8649545-8649665 1.0000 120 chr3L:9854778-9854898 1.0000 120 chrX:11137707-11137827 1.0000 120 chr3R:30912567-30912687 1.0000 120 chr2R:10854285-10854405 1.0000 120 chr2R:17851556-17851676 1.0000 120 chr3L:616892-617012 1.0000 120 chrX:10325952-10326072 1.0000 120 chr2R:13584491-13584611 1.0000 120 chr3R:31687953-31688073 1.0000 120 chr3R:31060417-31060537 1.0000 120 chr2L:8825489-8825609 1.0000 120 chr3L:13922392-13922512 1.0000 120 chr3L:18272279-18272399 1.0000 120 chr3L:3983531-3983651 1.0000 120 chr2R:8327195-8327315 1.0000 120 chr2L:20734267-20734387 1.0000 120 chr3R:14741464-14741584 1.0000 120 chr3R:31608891-31609011 1.0000 120 chrX:3367436-3367556 1.0000 120 chr2L:6971826-6971946 1.0000 120 chr2R:13429957-13430077 1.0000 120 chrX:10086352-10086472 1.0000 120 chr3R:16255361-16255481 1.0000 120 chrX:8606300-8606420 1.0000 120 chr2L:1473592-1473712 1.0000 120 chr2R:19860389-19860509 1.0000 120 chr3R:27245302-27245422 1.0000 120 chr2R:20906663-20906783 1.0000 120 chr2R:23176765-23176885 1.0000 120 chr2R:14458088-14458208 1.0000 120 chr3R:29039978-29040098 1.0000 120 chr2L:6179105-6179225 1.0000 120 chr2L:6078996-6079116 1.0000 120 chrX:2166264-2166384 1.0000 120 chr2R:16150930-16151050 1.0000 120 chr2L:15248781-15248901 1.0000 120 chrX:5972187-5972307 1.0000 120 chrX:3068412-3068532 1.0000 120 chrX:1370123-1370243 1.0000 120 chr2L:15039407-15039527 1.0000 120 chr3L:10847892-10848012 1.0000 120 chr2L:6907809-6907929 1.0000 120 chrX:7901771-7901891 1.0000 120 chr2R:21060512-21060632 1.0000 120 chr3R:29869217-29869337 1.0000 120 chr3L:3875117-3875237 1.0000 120 chr3R:19114012-19114132 1.0000 120 chr3L:9028185-9028305 1.0000 120 chr2R:13337284-13337404 1.0000 120 chr3L:21821863-21821983 1.0000 120 chr2L:19866997-19867117 1.0000 120 chr2L:552761-552881 1.0000 120 chr2R:11628155-11628275 1.0000 120 chr2R:9971175-9971295 1.0000 120 chr2L:11417657-11417777 1.0000 120 chr2R:14913217-14913337 1.0000 120 chr2L:7632940-7633060 1.0000 120 chr2L:1462192-1462312 1.0000 120 chr2R:24046783-24046903 1.0000 120 chr3R:14625699-14625819 1.0000 120 chr2R:23940195-23940315 1.0000 120 chr2L:3861520-3861640 1.0000 120 chrX:17125148-17125268 1.0000 120 chr2L:13833093-13833213 1.0000 120 chr3L:4607781-4607901 1.0000 120 chr2L:18590775-18590895 1.0000 120 chr3L:5813154-5813274 1.0000 120 chr3L:3395543-3395663 1.0000 120 chr2L:22024592-22024712 1.0000 120 chr2L:1108320-1108440 1.0000 120 chr3L:15235361-15235481 1.0000 120 chr2R:10555527-10555647 1.0000 120 chr3L:6189695-6189815 1.0000 120 chr2R:12633444-12633564 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_chn/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/chn.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.267 C 0.234 G 0.226 T 0.273 Background letter frequencies (from file dataset with add-one prior applied): A 0.267 C 0.234 G 0.226 T 0.273 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTGGGTGK MEME-1 width = 8 sites = 48 llr = 439 E-value = 3.9e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGGTGK MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::::: pos.-specific C :1:1:::: probability G 91a7a:a6 matrix T :8:2:a:4 bits 2.1 * * * 1.9 * *** 1.7 * * *** 1.5 * * *** Relative 1.3 * * *** Entropy 1.1 ******** (13.2 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGGGTGG consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGTGK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:29039978-29040098 95 9.93e-06 GCGTGTATTG GTGGGTGG CAGAAGTGCA chr3R:9038833-9038953 98 9.93e-06 ATGTGAGTGT GTGGGTGG TGGGAAGGTC chr2R:20835813-20835933 13 9.93e-06 CGTATGTGTA GTGGGTGG CTGGGTGGTG chrX:10601677-10601797 41 9.93e-06 TGTCCCTCCT GTGGGTGG GGATGAGTGG chr2R:17869385-17869505 101 9.93e-06 GGGGGTGAGA GTGGGTGG TGTTTTGTGG chr2L:5907280-5907400 90 9.93e-06 TTGTTCAAGG GTGGGTGG CGGGCAGAGA chr2L:21096616-21096736 48 9.93e-06 CTGTGCAGTG GTGGGTGG CGGTTCGTTT chr3R:15286760-15286880 54 9.93e-06 cgctcATTGG GTGGGTGG GGATCCATAT chr3R:7109938-7110058 3 9.93e-06 GG GTGGGTGG CAATTGCTGC chr3L:6742313-6742433 3 9.93e-06 GA GTGGGTGG ACGGTAGGTC chr2L:4810420-4810540 83 9.93e-06 GCAGCATCAA GTGGGTgg tggaaaaggg chr2R:17870229-17870349 102 9.93e-06 TGGGCGGGCA GTGGGTGG CTGGGCGGTT chrX:10822196-10822316 19 9.93e-06 GTGGGTTGCC GTGGGTGG GCGTTGGATT chr3R:17604728-17604848 15 9.93e-06 ATCCCACTCG GTGGGTGG GCCAGCGGGG chr2L:12010264-12010384 72 2.19e-05 ccgagtgggt gtgggtgt ggttgtggtg chr3R:26566956-26567076 88 2.19e-05 ACCAGTGGTT GTGGGTGT AGTCACTCCA chr3L:21049554-21049674 15 2.19e-05 TTTTCCCATT GTGGGTGT TCAtctctct chr3R:25888987-25889107 41 2.19e-05 GCGCCGCtgt gtgggtgt gtgtgtctgc chr2L:3581055-3581175 37 2.19e-05 TTGATTTTGA GTGGGTGT TTTGCCCACC chr3R:4852404-4852524 27 2.19e-05 GCCAACCGCA GTGGGTGT TAATTTTCGC chr3L:15234618-15234738 75 2.19e-05 GGTGCCAGCT GTGGGTGT GAACCTGCTG chr3R:23730180-23730300 110 2.19e-05 CACAGGGGTG GTGGGTGT TTT chr2L:552761-552881 44 3.39e-05 CCCCAGCCTT GTGTGTGG GCCACAGGGG chr2R:14458088-14458208 93 3.39e-05 CGGGATATCA GTGTGTGG TGCTTATATA chr2R:17683775-17683895 33 3.39e-05 gtacgtgtgt gtgtgtgg gcggcgcgct chr2L:6091481-6091601 66 3.39e-05 gtgtgtgtgt gtgtgtgG TCCACACCTC chr2R:8327195-8327315 32 4.21e-05 GCTTGGGCTA GGGGGTGG GCGAGAGAGC chr3L:699744-699864 12 4.21e-05 CAGACTGAAC GGGGGTGG TGTCAGTTGT chr3L:9360252-9360372 70 4.21e-05 ACTGCACCAT GGGGGTGG TGATAAAAGG chr3L:9854047-9854167 103 4.21e-05 GAGCGGTTCT GGGGGTGG GTCAAGAAGC chr2R:10555527-10555647 74 5.66e-05 GAACCTGTGC GTGTGTGT GTTTTTAGAG chr3L:5813154-5813274 41 5.66e-05 TCTATATTTG GTGTGTGT ATTGGCTATG chr3L:12124258-12124378 88 5.66e-05 gtgtatgtgt gtgtgtgt gtACACCTAT chr2L:155487-155607 58 5.66e-05 TTACGTCACA GTGTGTGT GCTTCGCTCC chrX:6853554-6853674 74 5.66e-05 gtgactgagt gtgtgtgt gtgAGCAGAG chr2R:22242887-22243007 87 5.66e-05 ATATGTGGCT GTGTGTGT GCGGCATAAT chr2R:13429957-13430077 36 7.51e-05 GCGGGGTGGG GCGGGTGG ATTTTGATTT chr2R:12586905-12587025 12 7.51e-05 AAGGGGGCGG GCGGGTGG TGTGTGAGAG chrX:2790263-2790383 110 7.51e-05 GTTGCGGAGA GCGGGTGG GAG chr3L:9447003-9447123 112 7.51e-05 CACCGGAAGC GGGGGTGT G chr3R:31725642-31725762 71 7.51e-05 CGCCTGGGGA GGGGGTGT GAGTGAGCAG chrX:2166264-2166384 9 8.54e-05 GCGAAAAT GTGCGTGG CAATCAAGCT chr3L:14451682-14451802 7 9.71e-05 AAAAAA ATGGGTGG GCTACACAAT chr3R:15089392-15089512 51 9.71e-05 ATTTGGTCAA ATGGGTGG AAATAGCTTT chr3R:31945738-31945858 7 9.71e-05 CAGGAG ATGGGTGG TGGCATAACC chr3L:13666866-13666986 90 9.71e-05 ggatggatgg atgggtgg tggtgggtag chr3L:3395543-3395663 44 1.30e-04 CTCTGTGTTG GTGCGTGT TTGTGGAAAT chr3R:26010731-26010851 49 1.30e-04 CCTGTCTGCG GTGCGTGT CGCTGGCAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGTGK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29039978-29040098 9.9e-06 94_[+1]_18 chr3R:9038833-9038953 9.9e-06 97_[+1]_15 chr2R:20835813-20835933 9.9e-06 12_[+1]_100 chrX:10601677-10601797 9.9e-06 40_[+1]_72 chr2R:17869385-17869505 9.9e-06 100_[+1]_12 chr2L:5907280-5907400 9.9e-06 89_[+1]_23 chr2L:21096616-21096736 9.9e-06 47_[+1]_65 chr3R:15286760-15286880 9.9e-06 53_[+1]_59 chr3R:7109938-7110058 9.9e-06 2_[+1]_110 chr3L:6742313-6742433 9.9e-06 2_[+1]_110 chr2L:4810420-4810540 9.9e-06 82_[+1]_30 chr2R:17870229-17870349 9.9e-06 101_[+1]_11 chrX:10822196-10822316 9.9e-06 18_[+1]_94 chr3R:17604728-17604848 9.9e-06 14_[+1]_98 chr2L:12010264-12010384 2.2e-05 71_[+1]_41 chr3R:26566956-26567076 2.2e-05 87_[+1]_25 chr3L:21049554-21049674 2.2e-05 14_[+1]_98 chr3R:25888987-25889107 2.2e-05 40_[+1]_72 chr2L:3581055-3581175 2.2e-05 36_[+1]_76 chr3R:4852404-4852524 2.2e-05 26_[+1]_86 chr3L:15234618-15234738 2.2e-05 74_[+1]_38 chr3R:23730180-23730300 2.2e-05 109_[+1]_3 chr2L:552761-552881 3.4e-05 43_[+1]_69 chr2R:14458088-14458208 3.4e-05 92_[+1]_20 chr2R:17683775-17683895 3.4e-05 32_[+1]_80 chr2L:6091481-6091601 3.4e-05 65_[+1]_47 chr2R:8327195-8327315 4.2e-05 31_[+1]_81 chr3L:699744-699864 4.2e-05 11_[+1]_101 chr3L:9360252-9360372 4.2e-05 69_[+1]_43 chr3L:9854047-9854167 4.2e-05 102_[+1]_10 chr2R:10555527-10555647 5.7e-05 73_[+1]_39 chr3L:5813154-5813274 5.7e-05 40_[+1]_72 chr3L:12124258-12124378 5.7e-05 87_[+1]_25 chr2L:155487-155607 5.7e-05 57_[+1]_55 chrX:6853554-6853674 5.7e-05 73_[+1]_39 chr2R:22242887-22243007 5.7e-05 86_[+1]_26 chr2R:13429957-13430077 7.5e-05 35_[+1]_77 chr2R:12586905-12587025 7.5e-05 11_[+1]_101 chrX:2790263-2790383 7.5e-05 109_[+1]_3 chr3L:9447003-9447123 7.5e-05 111_[+1]_1 chr3R:31725642-31725762 7.5e-05 70_[+1]_42 chrX:2166264-2166384 8.5e-05 8_[+1]_104 chr3L:14451682-14451802 9.7e-05 6_[+1]_106 chr3R:15089392-15089512 9.7e-05 50_[+1]_62 chr3R:31945738-31945858 9.7e-05 6_[+1]_106 chr3L:13666866-13666986 9.7e-05 89_[+1]_23 chr3L:3395543-3395663 0.00013 43_[+1]_69 chr3R:26010731-26010851 0.00013 48_[+1]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGTGK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGGTGK width=8 seqs=48 chr3R:29039978-29040098 ( 95) GTGGGTGG 1 chr3R:9038833-9038953 ( 98) GTGGGTGG 1 chr2R:20835813-20835933 ( 13) GTGGGTGG 1 chrX:10601677-10601797 ( 41) GTGGGTGG 1 chr2R:17869385-17869505 ( 101) GTGGGTGG 1 chr2L:5907280-5907400 ( 90) GTGGGTGG 1 chr2L:21096616-21096736 ( 48) GTGGGTGG 1 chr3R:15286760-15286880 ( 54) GTGGGTGG 1 chr3R:7109938-7110058 ( 3) GTGGGTGG 1 chr3L:6742313-6742433 ( 3) GTGGGTGG 1 chr2L:4810420-4810540 ( 83) GTGGGTGG 1 chr2R:17870229-17870349 ( 102) GTGGGTGG 1 chrX:10822196-10822316 ( 19) GTGGGTGG 1 chr3R:17604728-17604848 ( 15) GTGGGTGG 1 chr2L:12010264-12010384 ( 72) GTGGGTGT 1 chr3R:26566956-26567076 ( 88) GTGGGTGT 1 chr3L:21049554-21049674 ( 15) GTGGGTGT 1 chr3R:25888987-25889107 ( 41) GTGGGTGT 1 chr2L:3581055-3581175 ( 37) GTGGGTGT 1 chr3R:4852404-4852524 ( 27) GTGGGTGT 1 chr3L:15234618-15234738 ( 75) GTGGGTGT 1 chr3R:23730180-23730300 ( 110) GTGGGTGT 1 chr2L:552761-552881 ( 44) GTGTGTGG 1 chr2R:14458088-14458208 ( 93) GTGTGTGG 1 chr2R:17683775-17683895 ( 33) GTGTGTGG 1 chr2L:6091481-6091601 ( 66) GTGTGTGG 1 chr2R:8327195-8327315 ( 32) GGGGGTGG 1 chr3L:699744-699864 ( 12) GGGGGTGG 1 chr3L:9360252-9360372 ( 70) GGGGGTGG 1 chr3L:9854047-9854167 ( 103) GGGGGTGG 1 chr2R:10555527-10555647 ( 74) GTGTGTGT 1 chr3L:5813154-5813274 ( 41) GTGTGTGT 1 chr3L:12124258-12124378 ( 88) GTGTGTGT 1 chr2L:155487-155607 ( 58) GTGTGTGT 1 chrX:6853554-6853674 ( 74) GTGTGTGT 1 chr2R:22242887-22243007 ( 87) GTGTGTGT 1 chr2R:13429957-13430077 ( 36) GCGGGTGG 1 chr2R:12586905-12587025 ( 12) GCGGGTGG 1 chrX:2790263-2790383 ( 110) GCGGGTGG 1 chr3L:9447003-9447123 ( 112) GGGGGTGT 1 chr3R:31725642-31725762 ( 71) GGGGGTGT 1 chrX:2166264-2166384 ( 9) GTGCGTGG 1 chr3L:14451682-14451802 ( 7) ATGGGTGG 1 chr3R:15089392-15089512 ( 51) ATGGGTGG 1 chr3R:31945738-31945858 ( 7) ATGGGTGG 1 chr3L:13666866-13666986 ( 90) ATGGGTGG 1 chr3L:3395543-3395663 ( 44) GTGCGTGT 1 chr3R:26010731-26010851 ( 49) GTGCGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGTGK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3 E= 3.9e-023 -168 -1223 202 -1223 -1223 -190 -85 157 -1223 -1223 215 -1223 -1223 -190 169 -39 -1223 -1223 215 -1223 -1223 -1223 -1223 187 -1223 -1223 215 -1223 -1223 -1223 147 46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGTGK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 3.9e-023 0.083333 0.000000 0.916667 0.000000 0.000000 0.062500 0.125000 0.812500 0.000000 0.000000 1.000000 0.000000 0.000000 0.062500 0.729167 0.208333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.625000 0.375000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGTGK MEME-1 regular expression -------------------------------------------------------------------------------- GTG[GT]GTG[GT] -------------------------------------------------------------------------------- Time 7.20 secs. ******************************************************************************** ******************************************************************************** MOTIF CCRCCCAC MEME-2 width = 8 sites = 54 llr = 470 E-value = 1.3e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCRCCCAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3:6:1:6: pos.-specific C 7a:a9a2a probability G ::4:::1: matrix T ::::::1: bits 2.1 * * * * 1.9 * * * * 1.7 * * * * 1.5 * *** * Relative 1.3 * *** * Entropy 1.1 ****** * (12.6 bits) 0.9 ****** * 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCACCCAC consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCCAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9116510-9116630 56 1.17e-05 GTACCCTTCC CCACCCAC GAACAGAGTG chr3R:9704748-9704868 90 1.17e-05 TGGTATCGCA CCACCCAC CACCCCCTTT chr2L:3803796-3803916 79 1.17e-05 CCTCCACCCA CCACCCAC CTACGTCAGA chr2R:17683775-17683895 106 1.17e-05 GCCCTCGCAG CCACCCAC CACCCCC chr2L:13512980-13513100 81 1.17e-05 AGCGCCTGCT CCACCCAC TGTGGAGCCA chr2L:9158424-9158544 54 1.17e-05 AGACACCCAC CCACCCAC ACTTGTGTGT chr2R:24744314-24744434 2 1.17e-05 A CCACCCAC TTaacaacaa chrX:9152196-9152316 111 1.17e-05 AGCGCCAAAG CCACCCAC AC chr2L:2749523-2749643 7 1.17e-05 acacca ccacccac cacAAGTGCT chr3L:18748585-18748705 65 1.17e-05 ATCGATAGTC CCACCCAC ATCGATAGAC chr3L:753949-754069 10 1.17e-05 GCTGCCTgc ccacccac ttccactcac chr3R:23730180-23730300 92 1.17e-05 GGCGAATGCA CCACCCAC CACAGGGGTG chr2R:14008409-14008529 57 1.17e-05 GCTCCCCCAG CCACCCAC TCTCCCGTTC chrX:16150834-16150954 99 1.17e-05 ACCTATATGG CCACCCAC CTCCCACCCG chr3R:11735564-11735684 90 1.17e-05 ACCCATTCCG CCACCCAC CGCTTCCTTT chr3L:21175701-21175821 65 2.16e-05 CATATGCGCA CCGCCCAC GTGCGGTCAC chr3L:21049554-21049674 74 2.16e-05 TCCCCGTCTG CCGCCCAC GAAAAGGTTG chr3R:31725642-31725762 3 2.16e-05 AA CCGCCCAC CCCTAAAACA chr3R:12449798-12449918 78 2.16e-05 AGTGCCCTTG CCGCCCAC AAGTGCGCCC chrX:11137707-11137827 52 3.50e-05 TACAGTGGAA ACACCCAC ATTCGAGACG chr3L:9447003-9447123 97 3.50e-05 CGTAAAAAAA ACACCCAC CGGAAGCGGG chrX:7307675-7307795 89 3.50e-05 ACGCACACGa acacccac acgaacagca chr2L:16271513-16271633 7 3.50e-05 tcgcgc acacccac aacctcaccc chr2R:15129915-15130035 40 3.50e-05 TGAATTTTTT ACACCCAC CCATCGATAG chr2R:16150930-16151050 86 5.65e-05 GTTTACACAA ACGCCCAC ACCCCCCGCC chr2L:5944738-5944858 32 5.65e-05 GTGCAATGGG CCACCCCC TCGCAGGGCC chrX:5770898-5771018 107 5.65e-05 TGCATGGCCC ACGCCCAC GCCAGC chr3R:15286760-15286880 11 5.65e-05 GATATTTCTA CCACCCCc tctttctttc chr2R:22242887-22243007 47 5.65e-05 GTCGTAGTTC ACGCCCAC GCCCACTCTA chr2R:15117578-15117698 15 5.65e-05 GCCGTGTCCC ACGCCCAC TCGTCAAGGG chr3R:8707298-8707418 46 5.65e-05 CCACCGCCCA ACGCCCAC TTTGTCCGCC chr3L:13044408-13044528 2 6.52e-05 C CCGCCCCC AGCATCGATA chr2R:15611049-15611169 83 6.52e-05 GGCCCGACGT CCGCCCCC ATTTCCCGGC chr2L:5978907-5979027 64 6.52e-05 GGTCCCGGCC CCGCCCCC GCTCTCCACA chr2R:15094734-15094854 7 6.52e-05 CGCCCA CCGCCCCC CTGTCAATGC chr3R:8808183-8808303 79 6.52e-05 CCCCGAATAC CCGCCCCC ACAATTCACC chr2R:15130863-15130983 75 6.52e-05 CCTGTTACAC CCGCCCCC TGCCCGAAAG chrX:10325952-10326072 4 8.71e-05 TTT CCACCCGC AATGCCGATG chr2L:3581055-3581175 50 8.71e-05 GGTGTTTTGC CCACCCTC TCTTTCCCTC chr2L:12003507-12003627 71 1.06e-04 GCCAGCATGC CCGCCCGC CTGGCTTATC chr2L:18150537-18150657 27 1.06e-04 ACCATCCTCA CCGCCCTC CCTCTCACTT chr3R:30765660-30765780 113 1.06e-04 ACAAACAGCG CCGCCCTC chrX:16216963-16217083 101 1.06e-04 AGCGAGAGAT CCGCCCGC ACTTGAGTCC chr3L:14028589-14028709 59 1.06e-04 GTTACCCTGT CCGCCCGC GCTCCAACCC chr2R:16517139-16517259 26 1.06e-04 CTCGCTCGCA CCGCCCTC GCAATGTCGC chr3L:18272279-18272399 37 1.41e-04 AACTCTTACC Ccacacac acacacacac chr3R:30912567-30912687 89 1.77e-04 CATCTCCCTC ACACCCTC TCGCCGGTGC chr3R:31086492-31086612 17 1.77e-04 TCGGACAACC ACACCCTC GCGTGCACTG chr2L:8543294-8543414 92 1.98e-04 CGAAAATTTA ACGCCCGC GCTGCTGCAG chrX:16149156-16149276 22 2.13e-04 gcacaggagc acacacac aaagcacctc chrX:17229928-17230048 102 2.13e-04 AGCTTTTGGC ACACACAC AAGTAACTCC chr2L:11516726-11516846 1 2.13e-04 . ACACACAC GCACGCGAAC chr3R:26566956-26567076 34 2.38e-04 CCAACAGCAG CCACACCC AGTGCAGCAA chr2R:8659694-8659814 89 2.38e-04 AATATTCAAA CCACACCC ATGTGCGGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCCAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9116510-9116630 1.2e-05 55_[+2]_57 chr3R:9704748-9704868 1.2e-05 89_[+2]_23 chr2L:3803796-3803916 1.2e-05 78_[+2]_34 chr2R:17683775-17683895 1.2e-05 105_[+2]_7 chr2L:13512980-13513100 1.2e-05 80_[+2]_32 chr2L:9158424-9158544 1.2e-05 53_[+2]_59 chr2R:24744314-24744434 1.2e-05 1_[+2]_111 chrX:9152196-9152316 1.2e-05 110_[+2]_2 chr2L:2749523-2749643 1.2e-05 6_[+2]_106 chr3L:18748585-18748705 1.2e-05 64_[+2]_48 chr3L:753949-754069 1.2e-05 9_[+2]_103 chr3R:23730180-23730300 1.2e-05 91_[+2]_21 chr2R:14008409-14008529 1.2e-05 56_[+2]_56 chrX:16150834-16150954 1.2e-05 98_[+2]_14 chr3R:11735564-11735684 1.2e-05 89_[+2]_23 chr3L:21175701-21175821 2.2e-05 64_[+2]_48 chr3L:21049554-21049674 2.2e-05 73_[+2]_39 chr3R:31725642-31725762 2.2e-05 2_[+2]_110 chr3R:12449798-12449918 2.2e-05 77_[+2]_35 chrX:11137707-11137827 3.5e-05 51_[+2]_61 chr3L:9447003-9447123 3.5e-05 96_[+2]_16 chrX:7307675-7307795 3.5e-05 88_[+2]_24 chr2L:16271513-16271633 3.5e-05 6_[+2]_106 chr2R:15129915-15130035 3.5e-05 39_[+2]_73 chr2R:16150930-16151050 5.7e-05 85_[+2]_27 chr2L:5944738-5944858 5.7e-05 31_[+2]_81 chrX:5770898-5771018 5.7e-05 106_[+2]_6 chr3R:15286760-15286880 5.7e-05 10_[+2]_102 chr2R:22242887-22243007 5.7e-05 46_[+2]_66 chr2R:15117578-15117698 5.7e-05 14_[+2]_98 chr3R:8707298-8707418 5.7e-05 45_[+2]_67 chr3L:13044408-13044528 6.5e-05 1_[+2]_111 chr2R:15611049-15611169 6.5e-05 82_[+2]_30 chr2L:5978907-5979027 6.5e-05 63_[+2]_49 chr2R:15094734-15094854 6.5e-05 6_[+2]_106 chr3R:8808183-8808303 6.5e-05 78_[+2]_34 chr2R:15130863-15130983 6.5e-05 74_[+2]_38 chrX:10325952-10326072 8.7e-05 3_[+2]_109 chr2L:3581055-3581175 8.7e-05 49_[+2]_63 chr2L:12003507-12003627 0.00011 70_[+2]_42 chr2L:18150537-18150657 0.00011 26_[+2]_86 chr3R:30765660-30765780 0.00011 112_[+2] chrX:16216963-16217083 0.00011 100_[+2]_12 chr3L:14028589-14028709 0.00011 58_[+2]_54 chr2R:16517139-16517259 0.00011 25_[+2]_87 chr3L:18272279-18272399 0.00014 36_[+2]_76 chr3R:30912567-30912687 0.00018 88_[+2]_24 chr3R:31086492-31086612 0.00018 16_[+2]_96 chr2L:8543294-8543414 0.0002 91_[+2]_21 chrX:16149156-16149276 0.00021 21_[+2]_91 chrX:17229928-17230048 0.00021 101_[+2]_11 chr2L:11516726-11516846 0.00021 [+2]_112 chr3R:26566956-26567076 0.00024 33_[+2]_79 chr2R:8659694-8659814 0.00024 88_[+2]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCCAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCRCCCAC width=8 seqs=54 chr2R:9116510-9116630 ( 56) CCACCCAC 1 chr3R:9704748-9704868 ( 90) CCACCCAC 1 chr2L:3803796-3803916 ( 79) CCACCCAC 1 chr2R:17683775-17683895 ( 106) CCACCCAC 1 chr2L:13512980-13513100 ( 81) CCACCCAC 1 chr2L:9158424-9158544 ( 54) CCACCCAC 1 chr2R:24744314-24744434 ( 2) CCACCCAC 1 chrX:9152196-9152316 ( 111) CCACCCAC 1 chr2L:2749523-2749643 ( 7) CCACCCAC 1 chr3L:18748585-18748705 ( 65) CCACCCAC 1 chr3L:753949-754069 ( 10) CCACCCAC 1 chr3R:23730180-23730300 ( 92) CCACCCAC 1 chr2R:14008409-14008529 ( 57) CCACCCAC 1 chrX:16150834-16150954 ( 99) CCACCCAC 1 chr3R:11735564-11735684 ( 90) CCACCCAC 1 chr3L:21175701-21175821 ( 65) CCGCCCAC 1 chr3L:21049554-21049674 ( 74) CCGCCCAC 1 chr3R:31725642-31725762 ( 3) CCGCCCAC 1 chr3R:12449798-12449918 ( 78) CCGCCCAC 1 chrX:11137707-11137827 ( 52) ACACCCAC 1 chr3L:9447003-9447123 ( 97) ACACCCAC 1 chrX:7307675-7307795 ( 89) ACACCCAC 1 chr2L:16271513-16271633 ( 7) ACACCCAC 1 chr2R:15129915-15130035 ( 40) ACACCCAC 1 chr2R:16150930-16151050 ( 86) ACGCCCAC 1 chr2L:5944738-5944858 ( 32) CCACCCCC 1 chrX:5770898-5771018 ( 107) ACGCCCAC 1 chr3R:15286760-15286880 ( 11) CCACCCCC 1 chr2R:22242887-22243007 ( 47) ACGCCCAC 1 chr2R:15117578-15117698 ( 15) ACGCCCAC 1 chr3R:8707298-8707418 ( 46) ACGCCCAC 1 chr3L:13044408-13044528 ( 2) CCGCCCCC 1 chr2R:15611049-15611169 ( 83) CCGCCCCC 1 chr2L:5978907-5979027 ( 64) CCGCCCCC 1 chr2R:15094734-15094854 ( 7) CCGCCCCC 1 chr3R:8808183-8808303 ( 79) CCGCCCCC 1 chr2R:15130863-15130983 ( 75) CCGCCCCC 1 chrX:10325952-10326072 ( 4) CCACCCGC 1 chr2L:3581055-3581175 ( 50) CCACCCTC 1 chr2L:12003507-12003627 ( 71) CCGCCCGC 1 chr2L:18150537-18150657 ( 27) CCGCCCTC 1 chr3R:30765660-30765780 ( 113) CCGCCCTC 1 chrX:16216963-16217083 ( 101) CCGCCCGC 1 chr3L:14028589-14028709 ( 59) CCGCCCGC 1 chr2R:16517139-16517259 ( 26) CCGCCCTC 1 chr3L:18272279-18272399 ( 37) CCACACAC 1 chr3R:30912567-30912687 ( 89) ACACCCTC 1 chr3R:31086492-31086612 ( 17) ACACCCTC 1 chr2L:8543294-8543414 ( 92) ACGCCCGC 1 chrX:16149156-16149276 ( 22) ACACACAC 1 chrX:17229928-17230048 ( 102) ACACACAC 1 chr2L:11516726-11516846 ( 1) ACACACAC 1 chr3R:26566956-26567076 ( 34) CCACACCC 1 chr2R:8659694-8659814 ( 89) CCACACCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCCAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.224 E= 1.3e-020 15 159 -1240 -1240 -1240 210 -1240 -1240 115 -1240 85 -1240 -1240 210 -1240 -1240 -126 193 -1240 -1240 -1240 210 -1240 -1240 119 -34 -129 -130 -1240 210 -1240 -1240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCCAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 1.3e-020 0.296296 0.703704 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.592593 0.000000 0.407407 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.611111 0.185185 0.092593 0.111111 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCCAC MEME-2 regular expression -------------------------------------------------------------------------------- [CA]C[AG]CCCAC -------------------------------------------------------------------------------- Time 13.22 secs. ******************************************************************************** ******************************************************************************** MOTIF GCNCTCKC MEME-3 width = 8 sites = 38 llr = 320 E-value = 3.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCNCTCKC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::3::::: pos.-specific C 1a3a:a:9 probability G 8:2:::6: matrix T ::2:a:41 bits 2.1 * * * 1.9 * *** 1.7 * *** 1.5 ** *** * Relative 1.3 ** *** * Entropy 1.1 ** ***** (12.1 bits) 0.9 ** ***** 0.6 ** ***** 0.4 ** ***** 0.2 ** ***** 0.0 -------- Multilevel GCCCTCGC consensus A T sequence G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCNCTCKC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17683775-17683895 96 9.78e-06 TGCAGCCTCC GCCCTCGC AGCCACCCAC chr3R:4835424-4835544 98 9.78e-06 GCACCCTAGA GCCCTCGC TGTCTCACTC chr3R:25888987-25889107 57 9.78e-06 gtgtgtgtct gccctcgc atttgtgtga chrX:16149156-16149276 86 2.09e-05 CGGCTCACTC GCACTCGC GCGGAGAGAC chr2R:17869385-17869505 11 2.09e-05 AGACTAGCCG GCACTCGc agcaacaaaa chrX:5770898-5771018 18 2.09e-05 AATGCACCAC GCACTCGC ACTATCTCTC chrX:771776-771896 59 2.09e-05 CGACAGTTCG GCACTCGC TTTAAAACCA chr2L:16271513-16271633 57 2.09e-05 CGGTTCAGTC GCACTCGC TTCTACGCCC chrX:16216963-16217083 74 2.09e-05 GGGTCATTAG GCACTCGC CCGAGTGCGA chr2R:14008409-14008529 26 2.09e-05 TCGCTCATTC GCACTCGC CAGTTGCCTT chr2R:8649545-8649665 38 3.04e-05 ACAGCGGCGC GCGCTCGC CTAATGAAGT chr3R:31086492-31086612 95 3.04e-05 CTGCTTTAAT GCGCTCGC CCGAAAGTAT chr3R:30912567-30912687 52 5.36e-05 TGCACAGGCA GCTCTCGC TACTCGTCGG chr3R:9704748-9704868 22 5.36e-05 CTATCCCTCT GCCCTCTC GCTATATGAA chr3L:12124258-12124378 10 5.36e-05 CGGCTGTCT GCCCTCTC GTTCGCACTC chr3R:26010731-26010851 78 5.36e-05 GTCCGTTCTC GCCCTCTC TGTCGCTCGA chr2R:25061731-25061851 30 5.36e-05 CGACGGCACT GCTCTCGC TCACACTTTC chr3R:11735564-11735684 15 5.36e-05 TGGATGCGCC GCTCTCGC CACGGATTCG chr3L:15514568-15514688 25 5.36e-05 GCCCCACGCA GCCCTCTC TTTCGCTCCA chr2R:21475096-21475216 75 6.71e-05 TCACTCTCTT GCACTCTC TCTTTCTTTC chr2R:16731320-16731440 1 7.85e-05 . GCGCTCTC CCACTCGCAC chr2R:5726944-5727064 64 7.85e-05 GCAAATGGCG GCGCTCTC AGCTGATAGC chr2R:17851556-17851676 5 9.23e-05 AGCT Gctctctc gcaactctct chr2R:8018865-8018985 32 9.23e-05 TCTATGTACC GCTCTCTC CCTGTCGCCC chr2L:3803796-3803916 98 9.23e-05 TACGTCAGAC GCTCTCTC CAGTAAACGA chr2R:9955211-9955331 87 9.23e-05 TATCTACCCT GCTCTCTC ATCAACAAGT chrX:16150834-16150954 23 9.23e-05 AAAGTCTATC GCTCTCTC TGTCGCACAA chr2L:8415201-8415321 27 1.02e-04 TGCGACTTTT CCCCTCGC CCGACAGAAC chr3L:18272279-18272399 2 1.14e-04 A GCCCTCGT TTTGAGGGTA chr2R:15130863-15130983 99 1.14e-04 AAAGTTACCT GCCCTCGT CTCCGCGCTC chr2L:6971826-6971946 86 1.25e-04 GCCCCTTTTC CCACTCGC GTTCAATTGC chr2R:23176765-23176885 23 1.48e-04 GAAGTGCCTG CCGCTCGC TGCCTCAATT chrX:1399727-1399847 45 1.48e-04 TGTCGTTGTC CCGCTCGC ACTGCGGCCG chr2L:12010264-12010384 27 1.59e-04 ACATTTGGAC GCGCTCGT TGAAAGCGTG chr3R:14741464-14741584 97 2.10e-04 AATCAATGCA GCCCTCTT ACCCTATACA chr2R:9971175-9971295 89 2.52e-04 CATTTGAAGT GCACTCTT ATCCCTTTCA chr2R:10854285-10854405 56 2.52e-04 AACTATATCA CCGCTCTC ATACTACCAA chr2R:15129915-15130035 89 3.86e-04 TCCGCCTCCT TCCCTCTC ATTTCCACTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCNCTCKC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17683775-17683895 9.8e-06 95_[+3]_17 chr3R:4835424-4835544 9.8e-06 97_[+3]_15 chr3R:25888987-25889107 9.8e-06 56_[+3]_56 chrX:16149156-16149276 2.1e-05 85_[+3]_27 chr2R:17869385-17869505 2.1e-05 10_[+3]_102 chrX:5770898-5771018 2.1e-05 17_[+3]_95 chrX:771776-771896 2.1e-05 58_[+3]_54 chr2L:16271513-16271633 2.1e-05 56_[+3]_56 chrX:16216963-16217083 2.1e-05 73_[+3]_39 chr2R:14008409-14008529 2.1e-05 25_[+3]_87 chr2R:8649545-8649665 3e-05 37_[+3]_75 chr3R:31086492-31086612 3e-05 94_[+3]_18 chr3R:30912567-30912687 5.4e-05 51_[+3]_61 chr3R:9704748-9704868 5.4e-05 21_[+3]_91 chr3L:12124258-12124378 5.4e-05 9_[+3]_103 chr3R:26010731-26010851 5.4e-05 77_[+3]_35 chr2R:25061731-25061851 5.4e-05 29_[+3]_83 chr3R:11735564-11735684 5.4e-05 14_[+3]_98 chr3L:15514568-15514688 5.4e-05 24_[+3]_88 chr2R:21475096-21475216 6.7e-05 74_[+3]_38 chr2R:16731320-16731440 7.9e-05 [+3]_112 chr2R:5726944-5727064 7.9e-05 63_[+3]_49 chr2R:17851556-17851676 9.2e-05 4_[+3]_108 chr2R:8018865-8018985 9.2e-05 31_[+3]_81 chr2L:3803796-3803916 9.2e-05 97_[+3]_15 chr2R:9955211-9955331 9.2e-05 86_[+3]_26 chrX:16150834-16150954 9.2e-05 22_[+3]_90 chr2L:8415201-8415321 0.0001 26_[+3]_86 chr3L:18272279-18272399 0.00011 1_[+3]_111 chr2R:15130863-15130983 0.00011 98_[+3]_14 chr2L:6971826-6971946 0.00013 85_[+3]_27 chr2R:23176765-23176885 0.00015 22_[+3]_90 chrX:1399727-1399847 0.00015 44_[+3]_68 chr2L:12010264-12010384 0.00016 26_[+3]_86 chr3R:14741464-14741584 0.00021 96_[+3]_16 chr2R:9971175-9971295 0.00025 88_[+3]_24 chr2R:10854285-10854405 0.00025 55_[+3]_57 chr2R:15129915-15130035 0.00039 88_[+3]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCNCTCKC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCNCTCKC width=8 seqs=38 chr2R:17683775-17683895 ( 96) GCCCTCGC 1 chr3R:4835424-4835544 ( 98) GCCCTCGC 1 chr3R:25888987-25889107 ( 57) GCCCTCGC 1 chrX:16149156-16149276 ( 86) GCACTCGC 1 chr2R:17869385-17869505 ( 11) GCACTCGC 1 chrX:5770898-5771018 ( 18) GCACTCGC 1 chrX:771776-771896 ( 59) GCACTCGC 1 chr2L:16271513-16271633 ( 57) GCACTCGC 1 chrX:16216963-16217083 ( 74) GCACTCGC 1 chr2R:14008409-14008529 ( 26) GCACTCGC 1 chr2R:8649545-8649665 ( 38) GCGCTCGC 1 chr3R:31086492-31086612 ( 95) GCGCTCGC 1 chr3R:30912567-30912687 ( 52) GCTCTCGC 1 chr3R:9704748-9704868 ( 22) GCCCTCTC 1 chr3L:12124258-12124378 ( 10) GCCCTCTC 1 chr3R:26010731-26010851 ( 78) GCCCTCTC 1 chr2R:25061731-25061851 ( 30) GCTCTCGC 1 chr3R:11735564-11735684 ( 15) GCTCTCGC 1 chr3L:15514568-15514688 ( 25) GCCCTCTC 1 chr2R:21475096-21475216 ( 75) GCACTCTC 1 chr2R:16731320-16731440 ( 1) GCGCTCTC 1 chr2R:5726944-5727064 ( 64) GCGCTCTC 1 chr2R:17851556-17851676 ( 5) GCTCTCTC 1 chr2R:8018865-8018985 ( 32) GCTCTCTC 1 chr2L:3803796-3803916 ( 98) GCTCTCTC 1 chr2R:9955211-9955331 ( 87) GCTCTCTC 1 chrX:16150834-16150954 ( 23) GCTCTCTC 1 chr2L:8415201-8415321 ( 27) CCCCTCGC 1 chr3L:18272279-18272399 ( 2) GCCCTCGT 1 chr2R:15130863-15130983 ( 99) GCCCTCGT 1 chr2L:6971826-6971946 ( 86) CCACTCGC 1 chr2R:23176765-23176885 ( 23) CCGCTCGC 1 chrX:1399727-1399847 ( 45) CCGCTCGC 1 chr2L:12010264-12010384 ( 27) GCGCTCGT 1 chr3R:14741464-14741584 ( 97) GCCCTCTT 1 chr2R:9971175-9971295 ( 89) GCACTCTT 1 chr2R:10854285-10854405 ( 56) CCGCTCTC 1 chr2R:15129915-15130035 ( 89) TCCCTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCNCTCKC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.90521 E= 3.0e+000 -1189 -83 190 -337 -1189 210 -1189 -1189 -2 43 -10 -38 -1189 210 -1189 -1189 -1189 -1189 -1189 187 -1189 210 -1189 -1189 -1189 -1189 136 62 -1189 189 -1189 -105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCNCTCKC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 3.0e+000 0.000000 0.131579 0.842105 0.026316 0.000000 1.000000 0.000000 0.000000 0.263158 0.315789 0.210526 0.210526 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.578947 0.421053 0.000000 0.868421 0.000000 0.131579 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCNCTCKC MEME-3 regular expression -------------------------------------------------------------------------------- GC[CAGT]CTC[GT]C -------------------------------------------------------------------------------- Time 19.17 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGCGAGA MEME-4 width = 8 sites = 23 llr = 213 E-value = 1.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGCGAGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :7:2:a:9 pos.-specific C :2:7:::1 probability G a:a:a:a: matrix T :2:2:::: bits 2.1 * * * * 1.9 * * *** 1.7 * * *** 1.5 * * **** Relative 1.3 * * **** Entropy 1.1 * * **** (13.4 bits) 0.9 * * **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGCGAGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCGAGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:8327195-8327315 66 1.16e-05 gagagagcca gagcgaga gagaacgaga chr2L:18947572-18947692 18 1.16e-05 TTCTAAGCGC GAGCGAGA GGGCCAGATA chr3L:18771873-18771993 46 1.16e-05 TTTCCACCAT GAGCGAGA GTGAGAGGGC chr3R:30338243-30338363 38 1.16e-05 GGGACGGGTG GAGCGAGA GAGCGCCAAT chr3R:31713418-31713538 99 1.16e-05 CGGTGAGAGA GAGCGAGA GCGCAGGAGA chr3R:4852404-4852524 59 1.16e-05 CCAGTTTGCC GAGCGAGA GGGCGCTATG chrX:16216963-16217083 90 1.16e-05 GCCCGAGTGC GAGCGAGA GATCCGCCCG chr2R:16517139-16517259 96 1.16e-05 GCAGTAGTGT GAGCGAGA CAGCTGCGGA chrX:10822196-10822316 47 1.16e-05 GTGTGGGTGC GAGCGAGA CGGCAGCAGA chr2R:9955211-9955331 65 2.18e-05 GTTTCGCCAC GCGCGAGA GCGGTATCTA chrX:5770898-5771018 78 2.18e-05 AGGGGAGGGG GCGCGAGA GGCAGAGAGA chr3R:14625699-14625819 68 3.37e-05 ATTTTGAGGT GTGCGAGA TCTGGTCACG chr3L:616892-617012 14 3.37e-05 ATGTGTGTAA GTGCGAGA GAGTTAGCGA chr2R:8649545-8649665 19 6.05e-05 gagagagtga gagagaga AACAGCGGCG chr3R:13952394-13952514 6 6.05e-05 TTACA GAGAGAGA AAAAATAGTT chr2R:15611049-15611169 3 6.05e-05 gc gagtgaga gggagggaga chr2L:5907280-5907400 112 6.05e-05 CAGAGAGGCC GAGTGAGA G chr2L:6078996-6079116 13 7.07e-05 GACGGAGTGT GAGCGAGC GAAGTGGTGT chrX:10601677-10601797 69 7.07e-05 TGGGGGATAT GAGCGAGC GGTACAATAG chr2L:22024592-22024712 113 9.42e-05 TTGGATGGTG GCGAGAGA chr3R:29039978-29040098 74 9.42e-05 ATTGGAGTGG GCGTGAGA CGCGCGTGTA chr2R:12586905-12587025 21 1.22e-04 GGCGGGTGGT GTGTGAGA GCTGCTGGTA chr2R:15094734-15094854 98 1.22e-04 AATCAATATT GTGAGAGA TAGATGTGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCGAGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:8327195-8327315 1.2e-05 65_[+4]_47 chr2L:18947572-18947692 1.2e-05 17_[+4]_95 chr3L:18771873-18771993 1.2e-05 45_[+4]_67 chr3R:30338243-30338363 1.2e-05 37_[+4]_75 chr3R:31713418-31713538 1.2e-05 98_[+4]_14 chr3R:4852404-4852524 1.2e-05 58_[+4]_54 chrX:16216963-16217083 1.2e-05 89_[+4]_23 chr2R:16517139-16517259 1.2e-05 95_[+4]_17 chrX:10822196-10822316 1.2e-05 46_[+4]_66 chr2R:9955211-9955331 2.2e-05 64_[+4]_48 chrX:5770898-5771018 2.2e-05 77_[+4]_35 chr3R:14625699-14625819 3.4e-05 67_[+4]_45 chr3L:616892-617012 3.4e-05 13_[+4]_99 chr2R:8649545-8649665 6e-05 18_[+4]_94 chr3R:13952394-13952514 6e-05 5_[+4]_107 chr2R:15611049-15611169 6e-05 2_[+4]_110 chr2L:5907280-5907400 6e-05 111_[+4]_1 chr2L:6078996-6079116 7.1e-05 12_[+4]_100 chrX:10601677-10601797 7.1e-05 68_[+4]_44 chr2L:22024592-22024712 9.4e-05 112_[+4] chr3R:29039978-29040098 9.4e-05 73_[+4]_39 chr2R:12586905-12587025 0.00012 20_[+4]_92 chr2R:15094734-15094854 0.00012 97_[+4]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCGAGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGCGAGA width=8 seqs=23 chr2R:8327195-8327315 ( 66) GAGCGAGA 1 chr2L:18947572-18947692 ( 18) GAGCGAGA 1 chr3L:18771873-18771993 ( 46) GAGCGAGA 1 chr3R:30338243-30338363 ( 38) GAGCGAGA 1 chr3R:31713418-31713538 ( 99) GAGCGAGA 1 chr3R:4852404-4852524 ( 59) GAGCGAGA 1 chrX:16216963-16217083 ( 90) GAGCGAGA 1 chr2R:16517139-16517259 ( 96) GAGCGAGA 1 chrX:10822196-10822316 ( 47) GAGCGAGA 1 chr2R:9955211-9955331 ( 65) GCGCGAGA 1 chrX:5770898-5771018 ( 78) GCGCGAGA 1 chr3R:14625699-14625819 ( 68) GTGCGAGA 1 chr3L:616892-617012 ( 14) GTGCGAGA 1 chr2R:8649545-8649665 ( 19) GAGAGAGA 1 chr3R:13952394-13952514 ( 6) GAGAGAGA 1 chr2R:15611049-15611169 ( 3) GAGTGAGA 1 chr2L:5907280-5907400 ( 112) GAGTGAGA 1 chr2L:6078996-6079116 ( 13) GAGCGAGC 1 chrX:10601677-10601797 ( 69) GAGCGAGC 1 chr2L:22024592-22024712 ( 113) GCGAGAGA 1 chr3R:29039978-29040098 ( 74) GCGTGAGA 1 chr2R:12586905-12587025 ( 21) GTGTGAGA 1 chr2R:15094734-15094854 ( 98) GTGAGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCGAGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.326 E= 1.8e+001 -1117 -1117 215 -1117 129 -43 -1117 -65 -1117 -1117 215 -1117 -62 148 -1117 -65 -1117 -1117 215 -1117 190 -1117 -1117 -1117 -1117 -1117 215 -1117 177 -143 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCGAGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.8e+001 0.000000 0.000000 1.000000 0.000000 0.652174 0.173913 0.000000 0.173913 0.000000 0.000000 1.000000 0.000000 0.173913 0.652174 0.000000 0.173913 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.913043 0.086957 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCGAGA MEME-4 regular expression -------------------------------------------------------------------------------- GAGCGAGA -------------------------------------------------------------------------------- Time 25.04 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCKCTC MEME-5 width = 8 sites = 26 llr = 236 E-value = 4.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:a18:9 probability G 1:::3::: matrix T 9:a:62a1 bits 2.1 * * 1.9 *** * 1.7 *** ** 1.5 **** ** Relative 1.3 **** *** Entropy 1.1 **** *** (13.1 bits) 0.9 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCTC consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16150930-16151050 34 1.67e-05 ctctgttctg tctctctc gcttgctttc chr2R:17851556-17851676 56 1.67e-05 ccactcacta tctctctc ACACGCTGAC chrX:15333352-15333472 5 1.67e-05 CCCA tctctctc actctgtctc chr3L:21049554-21049674 36 1.67e-05 tctctctcgc tctctctc tttctctcct chrX:7307675-7307795 61 1.67e-05 cccctctcac tctctctc CCACTGCTGC chrX:5770898-5771018 30 1.67e-05 ACTCGCACTA TCTCTCTC TTGGGCATCT chr3L:12627831-12627951 29 1.67e-05 tcttgctctc tctctctc tcgctctctc chr3R:15286760-15286880 29 1.67e-05 tctttctttc tctctctc tctatctcgc chr2R:25061731-25061851 2 1.67e-05 G TCTCTCTC GTTTCTGGTT chr3L:15235361-15235481 106 3.04e-05 CTCGATCGCA TCTCGCTC TAGTTCC chr2R:14458088-14458208 41 3.04e-05 TGTGGCGCCA TCTCGCTC TCGCCCACGA chr2R:7418665-7418785 56 3.04e-05 TTATGCGCTC TCTCGCTC TTTCGCACGC chr2R:16517139-16517259 15 3.04e-05 CGACCACCCC TCTCGCTC GCACCGCCCT chr2R:14008409-14008529 43 3.04e-05 CCAGTTGCCT TCTCGCTC CCCCAGCCAC chr2L:8543294-8543414 54 4.99e-05 GAGACTGAAC TCTCTTTC GTGCGAGTTC chr2R:21475096-21475216 34 4.99e-05 ACACTACCCA TCTCTTTC TGTGTCTCAG chr3L:18771873-18771993 109 4.99e-05 TCTTGCACTG TCTCTTTC TCTC chr2L:3581055-3581175 80 4.99e-05 GGTCGTGCCA TCTCTTTC TCGCCCATCG chr3L:753949-754069 64 4.99e-05 acTGTCTCCC TCTCTTTC CCGCTATCTG chr2L:16271513-16271633 85 6.60e-05 ACTCTCGCGT TCTCGTTC TCTCCCGCTC chr3R:30912567-30912687 81 8.02e-05 CAGAAGACCA TCTCCCTC ACACCCTCTC chr2R:8018865-8018985 52 8.02e-05 TGTCGCCCTG TCTCCCTC CCACCGCCGT chr3L:19170573-19170693 101 1.05e-04 TCCAGAGCTC GCTCGCTC GCTGGTACAA chr3L:12124258-12124378 63 1.05e-04 GGTTGCCCTG GCTCGCTC TGCAtgtgtg chr2R:8659694-8659814 11 1.25e-04 CTATAAATAA TCTCTCTT TAATAGTAAC chr3R:4835424-4835544 6 1.41e-04 CGCCA TCTCGCTT TTCCATCGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16150930-16151050 1.7e-05 33_[+5]_79 chr2R:17851556-17851676 1.7e-05 55_[+5]_57 chrX:15333352-15333472 1.7e-05 4_[+5]_108 chr3L:21049554-21049674 1.7e-05 35_[+5]_77 chrX:7307675-7307795 1.7e-05 60_[+5]_52 chrX:5770898-5771018 1.7e-05 29_[+5]_83 chr3L:12627831-12627951 1.7e-05 28_[+5]_84 chr3R:15286760-15286880 1.7e-05 28_[+5]_84 chr2R:25061731-25061851 1.7e-05 1_[+5]_111 chr3L:15235361-15235481 3e-05 105_[+5]_7 chr2R:14458088-14458208 3e-05 40_[+5]_72 chr2R:7418665-7418785 3e-05 55_[+5]_57 chr2R:16517139-16517259 3e-05 14_[+5]_98 chr2R:14008409-14008529 3e-05 42_[+5]_70 chr2L:8543294-8543414 5e-05 53_[+5]_59 chr2R:21475096-21475216 5e-05 33_[+5]_79 chr3L:18771873-18771993 5e-05 108_[+5]_4 chr2L:3581055-3581175 5e-05 79_[+5]_33 chr3L:753949-754069 5e-05 63_[+5]_49 chr2L:16271513-16271633 6.6e-05 84_[+5]_28 chr3R:30912567-30912687 8e-05 80_[+5]_32 chr2R:8018865-8018985 8e-05 51_[+5]_61 chr3L:19170573-19170693 0.00011 100_[+5]_12 chr3L:12124258-12124378 0.00011 62_[+5]_50 chr2R:8659694-8659814 0.00012 10_[+5]_102 chr3R:4835424-4835544 0.00014 5_[+5]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCKCTC width=8 seqs=26 chr2R:16150930-16151050 ( 34) TCTCTCTC 1 chr2R:17851556-17851676 ( 56) TCTCTCTC 1 chrX:15333352-15333472 ( 5) TCTCTCTC 1 chr3L:21049554-21049674 ( 36) TCTCTCTC 1 chrX:7307675-7307795 ( 61) TCTCTCTC 1 chrX:5770898-5771018 ( 30) TCTCTCTC 1 chr3L:12627831-12627951 ( 29) TCTCTCTC 1 chr3R:15286760-15286880 ( 29) TCTCTCTC 1 chr2R:25061731-25061851 ( 2) TCTCTCTC 1 chr3L:15235361-15235481 ( 106) TCTCGCTC 1 chr2R:14458088-14458208 ( 41) TCTCGCTC 1 chr2R:7418665-7418785 ( 56) TCTCGCTC 1 chr2R:16517139-16517259 ( 15) TCTCGCTC 1 chr2R:14008409-14008529 ( 43) TCTCGCTC 1 chr2L:8543294-8543414 ( 54) TCTCTTTC 1 chr2R:21475096-21475216 ( 34) TCTCTTTC 1 chr3L:18771873-18771993 ( 109) TCTCTTTC 1 chr2L:3581055-3581175 ( 80) TCTCTTTC 1 chr3L:753949-754069 ( 64) TCTCTTTC 1 chr2L:16271513-16271633 ( 85) TCTCGTTC 1 chr3R:30912567-30912687 ( 81) TCTCCCTC 1 chr2R:8018865-8018985 ( 52) TCTCCCTC 1 chr3L:19170573-19170693 ( 101) GCTCGCTC 1 chr3L:12124258-12124378 ( 63) GCTCGCTC 1 chr2R:8659694-8659814 ( 11) TCTCTCTT 1 chr3R:4835424-4835544 ( 6) TCTCGCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2493 E= 4.8e+001 -1134 -1134 -155 176 -1134 210 -1134 -1134 -1134 -1134 -1134 187 -1134 210 -1134 -1134 -1134 -160 62 108 -1134 172 -1134 -24 -1134 -1134 -1134 187 -1134 198 -1134 -183 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 4.8e+001 0.000000 0.000000 0.076923 0.923077 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.076923 0.346154 0.576923 0.000000 0.769231 0.000000 0.230769 0.000000 0.000000 0.000000 1.000000 0.000000 0.923077 0.000000 0.076923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-5 regular expression -------------------------------------------------------------------------------- TCTC[TG][CT]TC -------------------------------------------------------------------------------- Time 30.85 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:21131597-21131717 7.80e-01 120 chr3L:13666866-13666986 2.04e-02 89_[+1(9.71e-05)]_23 chr3R:17604728-17604848 1.36e-02 14_[+1(9.93e-06)]_98 chr2R:15129702-15129822 2.09e-01 120 chr2L:11516726-11516846 1.02e-01 120 chrX:10822196-10822316 1.66e-04 4_[+1(3.39e-05)]_6_[+1(9.93e-06)]_\ 20_[+4(1.16e-05)]_66 chr2R:15135535-15135655 1.29e-02 120 chr3R:31945738-31945858 1.07e-01 6_[+1(9.71e-05)]_106 chr3L:15514568-15514688 1.65e-03 28_[+5(4.99e-05)]_84 chr3R:8707298-8707418 6.31e-02 45_[+2(5.65e-05)]_67 chr3R:11735564-11735684 1.18e-03 14_[+3(5.36e-05)]_67_[+2(1.17e-05)]_\ 23 chrX:16150834-16150954 1.07e-04 22_[+3(9.23e-05)]_68_[+2(1.17e-05)]_\ 14 chr2R:17870229-17870349 7.37e-02 101_[+1(9.93e-06)]_11 chr2R:14008409-14008529 2.98e-05 13_[+5(3.04e-05)]_4_[+3(2.09e-05)]_\ 9_[+5(3.04e-05)]_6_[+2(1.17e-05)]_56 chr2R:16517139-16517259 6.58e-07 14_[+5(3.04e-05)]_5_[+3(9.78e-06)]_\ 60_[+4(1.16e-05)]_17 chr3R:23730180-23730300 2.74e-03 91_[+2(1.17e-05)]_10_[+1(2.19e-05)]_\ 3 chr3R:31086492-31086612 3.25e-03 94_[+3(3.04e-05)]_18 chr2R:15132449-15132569 4.38e-01 120 chr2R:15130863-15130983 2.67e-02 74_[+2(6.52e-05)]_38 chr3L:753949-754069 8.73e-04 9_[+2(1.17e-05)]_30_[+2(2.16e-05)]_\ 8_[+5(4.99e-05)]_49 chr2L:4810420-4810540 2.95e-02 82_[+1(9.93e-06)]_30 chrX:8671473-8671593 9.55e-01 120 chr3L:199270-199390 1.07e-01 120 chr3R:8008021-8008141 4.90e-01 120 chrX:1234049-1234169 2.58e-01 120 chr2R:15129915-15130035 4.05e-03 39_[+2(3.50e-05)]_73 chr2R:25061731-25061851 6.05e-03 1_[+5(1.67e-05)]_22_[+5(3.04e-05)]_\ 54_[+5(3.04e-05)]_19 chr3L:6742313-6742433 2.10e-02 2_[+1(9.93e-06)]_110 chr2R:15117578-15117698 3.76e-03 14_[+2(5.65e-05)]_98 chr2R:22242887-22243007 7.21e-04 46_[+2(5.65e-05)]_32_[+1(5.66e-05)]_\ 26 chr2L:18732957-18733077 1.30e-01 120 chr2R:20572599-20572719 8.36e-01 120 chr3R:15920822-15920942 1.01e-02 120 chr2L:18505658-18505778 9.19e-01 120 chr3R:7109938-7110058 4.90e-02 2_[+1(9.93e-06)]_110 chr3L:18748585-18748705 9.40e-02 64_[+2(1.17e-05)]_48 chr3R:8808183-8808303 1.05e-01 78_[+2(6.52e-05)]_34 chr3R:15286760-15286880 4.10e-06 10_[+2(5.65e-05)]_8_[+5(1.67e-05)]_\ 6_[+5(3.04e-05)]_5_[+1(9.93e-06)]_59 chr3L:9854047-9854167 1.34e-01 64_[+1(7.51e-05)]_30_[+1(4.21e-05)]_\ 10 chr2L:19233487-19233607 9.10e-01 120 chr2L:21096616-21096736 4.32e-03 47_[+1(9.93e-06)]_65 chr2R:17420059-17420179 8.50e-01 120 chr2L:7149059-7149179 9.22e-01 120 chr3R:12449798-12449918 5.83e-03 77_[+2(2.16e-05)]_14_[+2(5.65e-05)]_\ 13 chr3L:14028589-14028709 5.63e-02 120 chr2R:15094734-15094854 1.49e-02 6_[+2(6.52e-05)]_106 chr2L:5907280-5907400 4.70e-03 89_[+1(9.93e-06)]_14_[+4(6.05e-05)]_\ 1 chr3R:4804996-4805116 1.15e-01 120 chrX:6853554-6853674 3.76e-02 71_[+1(5.66e-05)]_41 chr3L:12627831-12627951 3.66e-03 24_[+5(1.67e-05)]_8_[+5(1.67e-05)]_\ 72 chr3R:31725642-31725762 5.90e-05 2_[+2(2.16e-05)]_60_[+1(7.51e-05)]_\ 42 chr2L:3819047-3819167 9.99e-01 120 chr2L:2749523-2749643 4.76e-02 6_[+2(1.17e-05)]_106 chr3R:15816389-15816509 9.99e-01 120 chrX:16216963-16217083 8.05e-05 73_[+3(2.09e-05)]_8_[+4(1.16e-05)]_\ 23 chr2R:15100684-15100804 3.92e-01 120 chr2L:5978907-5979027 4.51e-02 63_[+2(6.52e-05)]_49 chr2R:19311003-19311123 9.61e-01 120 chrX:7166460-7166580 9.70e-01 120 chr2L:8415201-8415321 2.37e-01 120 chr3L:18357788-18357908 1.00e+00 120 chr3R:30765660-30765780 1.15e-01 120 chrX:9152196-9152316 7.64e-02 110_[+2(1.17e-05)]_2 chr2L:6455299-6455419 5.68e-01 120 chr3R:30134557-30134677 9.63e-01 120 chr2L:16271513-16271633 2.51e-04 6_[+2(3.50e-05)]_42_[+3(2.09e-05)]_\ 4_[+2(5.65e-05)]_8_[+5(6.60e-05)]_28 chr3L:9360252-9360372 3.35e-01 69_[+1(4.21e-05)]_8_[+1(7.51e-05)]_\ 27 chr3R:15089392-15089512 2.18e-01 50_[+1(9.71e-05)]_62 chr3R:4911154-4911274 1.52e-01 120 chr3L:15234618-15234738 1.44e-01 74_[+1(2.19e-05)]_38 chr2R:6746270-6746390 5.73e-01 120 chr3R:10579707-10579827 9.90e-01 120 chr2R:24744314-24744434 1.24e-01 1_[+2(1.17e-05)]_111 chr2L:4055451-4055571 9.83e-01 120 chr2L:4224199-4224319 4.35e-01 120 chrX:771776-771896 8.82e-02 58_[+3(2.09e-05)]_54 chr2L:155487-155607 2.54e-02 57_[+1(5.66e-05)]_55 chrX:18910983-18911103 7.78e-01 120 chr2L:19452572-19452692 8.15e-01 120 chr3R:13885177-13885297 9.38e-01 120 chr2L:7295094-7295214 1.00e+00 120 chr3L:4407842-4407962 8.09e-01 120 chrX:3538860-3538980 9.34e-01 120 chrX:1399727-1399847 1.07e-02 120 chrX:5770898-5771018 4.14e-07 17_[+3(2.09e-05)]_4_[+5(1.67e-05)]_\ 40_[+4(2.18e-05)]_21_[+2(5.65e-05)]_6 chr2R:21470587-21470707 9.91e-01 120 chr2R:8659694-8659814 5.64e-03 120 chr2L:9158424-9158544 2.88e-02 49_[+2(1.17e-05)]_63 chr2R:17869385-17869505 2.39e-04 10_[+3(2.09e-05)]_66_[+1(9.93e-06)]_\ 8_[+1(9.93e-06)]_12 chrX:7307675-7307795 2.57e-04 22_[+5(1.67e-05)]_30_[+5(1.67e-05)]_\ 20_[+2(3.50e-05)]_24 chr3R:4852404-4852524 5.88e-04 26_[+1(2.19e-05)]_24_[+4(1.16e-05)]_\ 54 chr3R:26010731-26010851 6.39e-04 77_[+3(5.36e-05)]_35 chr3L:3843105-3843225 5.69e-01 120 chr3L:4532097-4532217 4.94e-01 120 chr2L:3581055-3581175 1.77e-05 36_[+1(2.19e-05)]_11_[+5(4.99e-05)]_\ 16_[+5(4.99e-05)]_33 chr2L:838153-838273 6.55e-01 120 chr3L:9447003-9447123 8.88e-03 68_[+2(8.71e-05)]_20_[+2(3.50e-05)]_\ 7_[+1(7.51e-05)]_1 chr3R:31713418-31713538 2.17e-02 98_[+4(1.16e-05)]_14 chr2R:15611049-15611169 6.92e-04 2_[+4(6.05e-05)]_72_[+2(6.52e-05)]_\ 30 chr3L:11429797-11429917 5.45e-01 120 chr2L:8478087-8478207 5.42e-01 120 chr3R:16309369-16309489 2.47e-01 120 chr2L:6047919-6048039 2.92e-01 120 chr2L:18150537-18150657 1.09e-02 120 chr3L:699744-699864 1.82e-01 11_[+1(4.21e-05)]_101 chr3R:30338243-30338363 2.38e-03 17_[+4(3.37e-05)]_12_[+4(1.16e-05)]_\ 75 chr2L:12093701-12093821 8.46e-01 120 chr3R:13952394-13952514 1.76e-01 5_[+4(6.05e-05)]_107 chr3L:18771873-18771993 3.13e-04 45_[+4(1.16e-05)]_55_[+5(4.99e-05)]_\ 4 chr2L:1145102-1145222 9.64e-01 120 chr3R:8923037-8923157 1.00e+00 120 chr2R:12173506-12173626 9.65e-01 120 chrX:13128102-13128222 3.88e-01 120 chr3R:14575888-14576008 5.22e-01 120 chr3L:2377485-2377605 7.27e-01 120 chr2R:7418665-7418785 8.67e-04 55_[+5(3.04e-05)]_57 chr2L:6091481-6091601 1.12e-01 51_[+1(5.66e-05)]_6_[+1(3.39e-05)]_\ 47 chr3R:25888987-25889107 1.97e-04 40_[+1(2.19e-05)]_8_[+3(9.78e-06)]_\ 10_[+1(2.19e-05)]_38 chr2L:7635354-7635474 8.96e-01 120 chr3L:14451682-14451802 3.09e-01 6_[+1(9.71e-05)]_106 chr2R:21527481-21527601 9.66e-01 120 chrX:10601677-10601797 1.18e-03 40_[+1(9.93e-06)]_20_[+4(7.07e-05)]_\ 44 chr2L:19121154-19121274 9.26e-01 120 chrX:17229928-17230048 4.47e-01 120 chr3R:4835424-4835544 2.71e-03 97_[+3(9.78e-06)]_15 chr2L:13512980-13513100 2.20e-02 56_[+2(2.16e-05)]_16_[+2(1.17e-05)]_\ 32 chrX:17780428-17780548 1.00e+00 120 chr3L:12124258-12124378 9.26e-05 9_[+3(5.36e-05)]_66_[+1(5.66e-05)]_\ 29 chr3L:21049554-21049674 1.60e-06 14_[+1(2.19e-05)]_3_[+5(1.67e-05)]_\ 2_[+5(1.67e-05)]_30_[+2(2.16e-05)]_39 chr3L:12850048-12850168 6.96e-01 120 chr2L:5944738-5944858 5.02e-03 31_[+2(5.65e-05)]_81 chr2R:16552014-16552134 9.85e-01 120 chr2R:14411667-14411787 3.14e-01 120 chr3L:16760441-16760561 9.06e-01 120 chr2L:11338329-11338449 1.00e+00 120 chr2R:20835813-20835933 2.41e-02 12_[+1(9.93e-06)]_100 chr3R:26566956-26567076 2.46e-02 87_[+1(2.19e-05)]_25 chr3R:23300776-23300896 9.20e-01 120 chr2R:17683775-17683895 1.33e-05 32_[+1(3.39e-05)]_55_[+3(9.78e-06)]_\ 2_[+2(1.17e-05)]_7 chr2R:21475096-21475216 1.59e-02 33_[+5(4.99e-05)]_17_[+5(6.60e-05)]_\ 14_[+5(4.99e-05)]_32 chr2R:9955211-9955331 1.47e-04 64_[+4(2.18e-05)]_14_[+3(9.23e-05)]_\ 26 chrX:2790263-2790383 7.68e-02 109_[+1(7.51e-05)]_3 chr2L:10276999-10277119 9.98e-01 120 chr3L:19170573-19170693 1.25e-02 120 chr2R:22450512-22450632 9.93e-02 120 chrX:10744497-10744617 1.42e-01 120 chr2R:5726944-5727064 6.26e-03 63_[+3(7.85e-05)]_49 chr3R:23303358-23303478 9.95e-01 120 chr2L:3803796-3803916 3.84e-04 71_[+2(1.17e-05)]_18_[+3(9.23e-05)]_\ 15 chr2R:12586905-12587025 3.14e-02 11_[+1(7.51e-05)]_101 chr2L:8543294-8543414 4.76e-04 53_[+5(4.99e-05)]_59 chr2R:7939131-7939251 8.93e-01 120 chr3L:21175701-21175821 4.34e-02 64_[+2(2.16e-05)]_48 chrX:16781264-16781384 9.92e-01 120 chr3L:13044408-13044528 9.34e-02 1_[+2(6.52e-05)]_111 chr2L:3058815-3058935 9.94e-01 120 chrX:16149156-16149276 4.06e-03 85_[+3(2.09e-05)]_27 chrX:10600672-10600792 9.31e-01 120 chr2R:16731320-16731440 5.23e-02 [+3(7.85e-05)]_112 chr2L:18947572-18947692 1.10e-02 17_[+4(1.16e-05)]_95 chr2L:12010264-12010384 3.43e-03 65_[+1(2.19e-05)]_47 chr3R:9038833-9038953 8.23e-02 97_[+1(9.93e-06)]_15 chrX:15333352-15333472 4.58e-04 4_[+5(1.67e-05)]_22_[+5(1.67e-05)]_\ [+5(3.04e-05)]_70 chrX:19298960-19299080 8.93e-01 120 chr3R:10648947-10649067 9.99e-01 120 chr2R:8018865-8018985 1.09e-04 31_[+3(9.23e-05)]_12_[+5(8.02e-05)]_\ 61 chr2L:478756-478876 2.52e-01 120 chr2L:12003507-12003627 1.04e-01 120 chr3R:9704748-9704868 1.25e-03 21_[+3(5.36e-05)]_60_[+2(1.17e-05)]_\ 23 chr2R:9116510-9116630 3.29e-02 55_[+2(1.17e-05)]_57 chr2L:22168574-22168694 6.43e-01 120 chr2R:16202915-16203035 5.57e-01 120 chr3R:25661666-25661786 9.95e-01 120 chr2R:18277197-18277317 9.49e-01 120 chr2R:10439010-10439130 6.86e-01 120 chr2R:8649545-8649665 2.47e-03 12_[+4(6.05e-05)]_17_[+3(3.04e-05)]_\ 75 chr3L:9854778-9854898 5.18e-01 120 chrX:11137707-11137827 3.26e-02 51_[+2(3.50e-05)]_61 chr3R:30912567-30912687 1.75e-03 51_[+3(5.36e-05)]_21_[+5(8.02e-05)]_\ 32 chr2R:10854285-10854405 1.42e-01 120 chr2R:17851556-17851676 1.71e-03 4_[+3(9.23e-05)]_43_[+5(1.67e-05)]_\ 57 chr3L:616892-617012 1.83e-02 13_[+4(3.37e-05)]_99 chrX:10325952-10326072 1.48e-01 3_[+2(8.71e-05)]_109 chr2R:13584491-13584611 1.28e-01 120 chr3R:31687953-31688073 4.84e-01 120 chr3R:31060417-31060537 8.44e-01 120 chr2L:8825489-8825609 4.03e-01 120 chr3L:13922392-13922512 9.90e-01 120 chr3L:18272279-18272399 2.92e-03 120 chr3L:3983531-3983651 9.96e-01 120 chr2R:8327195-8327315 4.00e-04 31_[+1(4.21e-05)]_[+4(9.42e-05)]_6_\ [+4(6.05e-05)]_4_[+4(1.16e-05)]_16_[+4(6.05e-05)]_23 chr2L:20734267-20734387 8.82e-01 120 chr3R:14741464-14741584 2.64e-01 120 chr3R:31608891-31609011 8.00e-01 120 chrX:3367436-3367556 9.90e-01 120 chr2L:6971826-6971946 8.58e-02 120 chr2R:13429957-13430077 3.66e-01 35_[+1(7.51e-05)]_77 chrX:10086352-10086472 3.85e-01 120 chr3R:16255361-16255481 5.48e-01 120 chrX:8606300-8606420 2.38e-01 120 chr2L:1473592-1473712 5.99e-01 120 chr2R:19860389-19860509 1.00e+00 120 chr3R:27245302-27245422 7.65e-01 120 chr2R:20906663-20906783 8.99e-01 120 chr2R:23176765-23176885 1.52e-02 120 chr2R:14458088-14458208 2.43e-05 6_[+3(5.36e-05)]_26_[+5(3.04e-05)]_\ 44_[+1(3.39e-05)]_20 chr3R:29039978-29040098 5.90e-03 73_[+4(9.42e-05)]_13_[+1(9.93e-06)]_\ 18 chr2L:6179105-6179225 3.10e-01 120 chr2L:6078996-6079116 1.49e-01 12_[+4(7.07e-05)]_100 chrX:2166264-2166384 2.15e-02 8_[+1(8.54e-05)]_104 chr2R:16150930-16151050 1.09e-03 33_[+5(1.67e-05)]_12_[+5(4.99e-05)]_\ 24_[+2(5.65e-05)]_12_[+2(5.65e-05)]_7 chr2L:15248781-15248901 5.31e-01 120 chrX:5972187-5972307 7.04e-01 120 chrX:3068412-3068532 9.90e-01 120 chrX:1370123-1370243 5.33e-01 120 chr2L:15039407-15039527 8.59e-01 120 chr3L:10847892-10848012 1.00e+00 120 chr2L:6907809-6907929 9.58e-01 120 chrX:7901771-7901891 2.42e-01 120 chr2R:21060512-21060632 9.99e-01 120 chr3R:29869217-29869337 2.30e-01 120 chr3L:3875117-3875237 1.00e+00 120 chr3R:19114012-19114132 2.49e-01 120 chr3L:9028185-9028305 9.36e-01 120 chr2R:13337284-13337404 6.20e-01 120 chr3L:21821863-21821983 6.04e-01 120 chr2L:19866997-19867117 2.87e-01 120 chr2L:552761-552881 6.64e-02 43_[+1(3.39e-05)]_6_[+1(4.21e-05)]_\ 55 chr2R:11628155-11628275 6.60e-01 120 chr2R:9971175-9971295 2.23e-01 120 chr2L:11417657-11417777 9.60e-01 120 chr2R:14913217-14913337 1.00e+00 120 chr2L:7632940-7633060 7.75e-01 120 chr2L:1462192-1462312 6.58e-01 120 chr2R:24046783-24046903 8.54e-01 120 chr3R:14625699-14625819 9.05e-03 67_[+4(3.37e-05)]_45 chr2R:23940195-23940315 9.60e-01 120 chr2L:3861520-3861640 8.81e-01 120 chrX:17125148-17125268 8.63e-01 120 chr2L:13833093-13833213 8.64e-01 120 chr3L:4607781-4607901 7.26e-01 120 chr2L:18590775-18590895 7.56e-01 120 chr3L:5813154-5813274 8.93e-02 40_[+1(5.66e-05)]_72 chr3L:3395543-3395663 2.35e-01 120 chr2L:22024592-22024712 2.93e-01 112_[+4(9.42e-05)] chr2L:1108320-1108440 4.61e-01 120 chr3L:15235361-15235481 2.47e-02 105_[+5(3.04e-05)]_7 chr2R:10555527-10555647 9.23e-02 73_[+1(5.66e-05)]_39 chr3L:6189695-6189815 8.49e-01 120 chr2R:12633444-12633564 9.22e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n04.farnam.hpc.yale.internal ********************************************************************************