******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/chif.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:19173133-19173253 1.0000 120 chr2L:15432353-15432473 1.0000 120 chr2R:21909989-21910109 1.0000 120 chrX:13630401-13630521 1.0000 120 chr2L:11394271-11394391 1.0000 120 chr2L:12528381-12528501 1.0000 120 chrX:11653181-11653301 1.0000 120 chr3R:15816440-15816560 1.0000 120 chr3L:11155439-11155559 1.0000 120 chr2L:7155046-7155166 1.0000 120 chr3L:11286764-11286884 1.0000 120 chr3R:11806880-11807000 1.0000 120 chr3L:8763297-8763417 1.0000 120 chr2L:8423930-8424050 1.0000 120 chr3L:10679788-10679908 1.0000 120 chr3R:23941789-23941909 1.0000 120 chr3L:295174-295294 1.0000 120 chr2L:1145077-1145197 1.0000 120 chr3L:14172631-14172751 1.0000 120 chr3R:10636167-10636287 1.0000 120 chr2L:1427899-1428019 1.0000 120 chr2L:15254382-15254502 1.0000 120 chr2R:21851712-21851832 1.0000 120 chr2L:7266137-7266257 1.0000 120 chr2L:3435174-3435294 1.0000 120 chr2L:4055565-4055685 1.0000 120 chr2L:15053172-15053292 1.0000 120 chr2L:18505604-18505724 1.0000 120 chr2R:6786798-6786918 1.0000 120 chr2L:7149063-7149183 1.0000 120 chr3R:23315769-23315889 1.0000 120 chrX:4498409-4498529 1.0000 120 chr2L:3356511-3356631 1.0000 120 chr2R:20572545-20572665 1.0000 120 chr3L:6086197-6086317 1.0000 120 chr2L:1655847-1655967 1.0000 120 chr2R:7141916-7142036 1.0000 120 chr2R:19276177-19276297 1.0000 120 chr2R:20091323-20091443 1.0000 120 chr3R:28623795-28623915 1.0000 120 chr2L:12351029-12351149 1.0000 120 chrX:3538933-3539053 1.0000 120 chr3R:13446715-13446835 1.0000 120 chr3R:26121973-26122093 1.0000 120 chr2R:20529468-20529588 1.0000 120 chr3L:1167087-1167207 1.0000 120 chrX:4762444-4762564 1.0000 120 chr2L:11950039-11950159 1.0000 120 chr2L:6307036-6307156 1.0000 120 chrX:4172292-4172412 1.0000 120 chrX:19348957-19349077 1.0000 120 chr3R:9085488-9085608 1.0000 120 chr2L:4335292-4335412 1.0000 120 chr3L:775144-775264 1.0000 120 chr2L:11331766-11331886 1.0000 120 chrX:19146446-19146566 1.0000 120 chr3R:26853850-26853970 1.0000 120 chr2R:8683468-8683588 1.0000 120 chr3R:15293793-15293913 1.0000 120 chr2R:12537626-12537746 1.0000 120 chr3R:24007996-24008116 1.0000 120 chr3L:19147192-19147312 1.0000 120 chr2R:13999345-13999465 1.0000 120 chr2R:22538896-22539016 1.0000 120 chr3R:26436686-26436806 1.0000 120 chrX:2861133-2861253 1.0000 120 chr2L:19200432-19200552 1.0000 120 chrX:8259965-8260085 1.0000 120 chr2L:12520424-12520544 1.0000 120 chr2L:19898655-19898775 1.0000 120 chrX:8542871-8542991 1.0000 120 chr3R:16704352-16704472 1.0000 120 chr2L:498303-498423 1.0000 120 chr3R:8920246-8920366 1.0000 120 chr3R:13469372-13469492 1.0000 120 chr3L:10337728-10337848 1.0000 120 chrX:18921076-18921196 1.0000 120 chrX:8601282-8601402 1.0000 120 chrX:8493612-8493732 1.0000 120 chr3R:16769518-16769638 1.0000 120 chr3L:94217-94337 1.0000 120 chr2L:7073177-7073297 1.0000 120 chrX:19164946-19165066 1.0000 120 chr3L:16760386-16760506 1.0000 120 chr2R:23668819-23668939 1.0000 120 chrX:6643043-6643163 1.0000 120 chrX:18837247-18837367 1.0000 120 chr3R:29696528-29696648 1.0000 120 chr3L:7862673-7862793 1.0000 120 chr3L:16149973-16150093 1.0000 120 chrX:6614354-6614474 1.0000 120 chr2R:10195083-10195203 1.0000 120 chr2L:8545787-8545907 1.0000 120 chr2L:838179-838299 1.0000 120 chr3R:6182662-6182782 1.0000 120 chr2L:11338397-11338517 1.0000 120 chrX:3403546-3403666 1.0000 120 chr3R:14589645-14589765 1.0000 120 chrX:20631286-20631406 1.0000 120 chr3L:11408938-11409058 1.0000 120 chrX:10600660-10600780 1.0000 120 chr3R:29089808-29089928 1.0000 120 chr2L:7144216-7144336 1.0000 120 chr3L:19674388-19674508 1.0000 120 chr3R:24598748-24598868 1.0000 120 chr3R:16276265-16276385 1.0000 120 chr3R:14077105-14077225 1.0000 120 chr3L:18357790-18357910 1.0000 120 chr3R:28556534-28556654 1.0000 120 chr3L:5819465-5819585 1.0000 120 chrX:3136816-3136936 1.0000 120 chr3L:15794423-15794543 1.0000 120 chr2L:3856434-3856554 1.0000 120 chr3L:5188338-5188458 1.0000 120 chr3L:20630679-20630799 1.0000 120 chr2L:3100903-3101023 1.0000 120 chrX:4581873-4581993 1.0000 120 chrX:14622344-14622464 1.0000 120 chr3L:1702663-1702783 1.0000 120 chr2R:17514134-17514254 1.0000 120 chr3L:14789806-14789926 1.0000 120 chr2R:23202113-23202233 1.0000 120 chr3R:8922959-8923079 1.0000 120 chr2R:19128034-19128154 1.0000 120 chr3R:13885181-13885301 1.0000 120 chrX:11548855-11548975 1.0000 120 chr2L:13056156-13056276 1.0000 120 chr2L:13838746-13838866 1.0000 120 chr3L:15672978-15673098 1.0000 120 chr3R:20276146-20276266 1.0000 120 chrX:19964295-19964415 1.0000 120 chr3R:10203707-10203827 1.0000 120 chr2L:14245603-14245723 1.0000 120 chrX:16781225-16781345 1.0000 120 chr2L:11417658-11417778 1.0000 120 chr3L:8741204-8741324 1.0000 120 chrX:10067663-10067783 1.0000 120 chrX:16834321-16834441 1.0000 120 chrX:9137306-9137426 1.0000 120 chr3L:10866682-10866802 1.0000 120 chr3R:9230354-9230474 1.0000 120 chr2R:23176761-23176881 1.0000 120 chr2L:3598630-3598750 1.0000 120 chrX:15591821-15591941 1.0000 120 chr3R:10628421-10628541 1.0000 120 chr2L:3477372-3477492 1.0000 120 chr3R:19648616-19648736 1.0000 120 chr2L:7635325-7635445 1.0000 120 chr2L:3587408-3587528 1.0000 120 chr3L:765919-766039 1.0000 120 chrX:16854835-16854955 1.0000 120 chrX:20507858-20507978 1.0000 120 chr2R:12274360-12274480 1.0000 120 chr2L:8080690-8080810 1.0000 120 chr2L:6698543-6698663 1.0000 120 chr3R:21118924-21119044 1.0000 120 chr3R:6667383-6667503 1.0000 120 chr3L:1216600-1216720 1.0000 120 chrX:3068422-3068542 1.0000 120 chr3L:4614065-4614185 1.0000 120 chr3R:21590040-21590160 1.0000 120 chrX:19008963-19009083 1.0000 120 chrX:17780527-17780647 1.0000 120 chr2R:8650575-8650695 1.0000 120 chr3R:23300802-23300922 1.0000 120 chr3L:5834372-5834492 1.0000 120 chr2L:2999244-2999364 1.0000 120 chr2L:8982641-8982761 1.0000 120 chrX:6663337-6663457 1.0000 120 chrX:3367413-3367533 1.0000 120 chrX:6615574-6615694 1.0000 120 chr3R:15644935-15645055 1.0000 120 chr3R:10079708-10079828 1.0000 120 chr2R:11809509-11809629 1.0000 120 chr2L:1207602-1207722 1.0000 120 chr3R:6406602-6406722 1.0000 120 chr2R:18209792-18209912 1.0000 120 chrX:19166412-19166532 1.0000 120 chrX:10387795-10387915 1.0000 120 chr2L:18377208-18377328 1.0000 120 chr2L:3852289-3852409 1.0000 120 chrX:5968208-5968328 1.0000 120 chr2R:10439051-10439171 1.0000 120 chrX:4010989-4011109 1.0000 120 chr2L:7376297-7376417 1.0000 120 chr2L:7339727-7339847 1.0000 120 chr2R:11095283-11095403 1.0000 120 chr2L:6461631-6461751 1.0000 120 chrX:17582827-17582947 1.0000 120 chr2L:1070492-1070612 1.0000 120 chr2R:7077040-7077160 1.0000 120 chr3L:6220321-6220441 1.0000 120 chr2R:13968181-13968301 1.0000 120 chr3L:5988824-5988944 1.0000 120 chr3R:26121172-26121292 1.0000 120 chrX:22837481-22837601 1.0000 120 chr2L:3882362-3882482 1.0000 120 chr3R:17540124-17540244 1.0000 120 chr3R:23679926-23680046 1.0000 120 chrX:17510678-17510798 1.0000 120 chr3L:11304001-11304121 1.0000 120 chr3L:11429924-11430044 1.0000 120 chr2L:18328865-18328985 1.0000 120 chrX:4609896-4610016 1.0000 120 chr3L:18784715-18784835 1.0000 120 chr3R:30532070-30532190 1.0000 120 chr3R:25004919-25005039 1.0000 120 chr3R:9055271-9055391 1.0000 120 chr3L:10845183-10845303 1.0000 120 chr2R:10103740-10103860 1.0000 120 chr2L:7602022-7602142 1.0000 120 chrX:2978179-2978299 1.0000 120 chr3R:28857460-28857580 1.0000 120 chr3L:3983517-3983637 1.0000 120 chr2L:3444894-3445014 1.0000 120 chr3L:3868188-3868308 1.0000 120 chr3R:21850274-21850394 1.0000 120 chr2L:1462177-1462297 1.0000 120 chr3L:13922365-13922485 1.0000 120 chr3R:9605229-9605349 1.0000 120 chr2L:827608-827728 1.0000 120 chrX:3761732-3761852 1.0000 120 chr2L:20911493-20911613 1.0000 120 chr2L:858245-858365 1.0000 120 chr3L:9028177-9028297 1.0000 120 chrX:8755476-8755596 1.0000 120 chr2R:20120736-20120856 1.0000 120 chr3R:26821238-26821358 1.0000 120 chr2L:19314745-19314865 1.0000 120 chr3R:23888764-23888884 1.0000 120 chr3L:5857101-5857221 1.0000 120 chr3L:21509570-21509690 1.0000 120 chr2R:17848956-17849076 1.0000 120 chr2L:901444-901564 1.0000 120 chr2L:18899962-18900082 1.0000 120 chr2R:7490407-7490527 1.0000 120 chr2L:1428414-1428534 1.0000 120 chr2L:10698152-10698272 1.0000 120 chr3R:31309373-31309493 1.0000 120 chr3L:11334061-11334181 1.0000 120 chr2L:20811343-20811463 1.0000 120 chr2R:14913264-14913384 1.0000 120 chr3L:3543090-3543210 1.0000 120 chr3R:13999683-13999803 1.0000 120 chr3L:17496978-17497098 1.0000 120 chr2R:9681845-9681965 1.0000 120 chrX:16782245-16782365 1.0000 120 chr3R:11661899-11662019 1.0000 120 chr2R:25085523-25085643 1.0000 120 chr3R:20948074-20948194 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_chif/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/chif.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.323 C 0.173 G 0.175 T 0.329 Background letter frequencies (from file dataset with add-one prior applied): A 0.323 C 0.173 G 0.175 T 0.329 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAGTGCAS MEME-1 width = 8 sites = 27 llr = 250 E-value = 3.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGTGCAS MEME-1 Description -------------------------------------------------------------------------------- Simplified A :8::::a: pos.-specific C a::::9:4 probability G :18:a::5 matrix T :12a:1:1 bits 2.5 * 2.3 * * 2.0 * ** 1.8 * ** Relative 1.5 * ***** Entropy 1.3 * ***** (13.4 bits) 1.0 * ****** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGTGCAG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCAS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5857101-5857221 100 5.51e-06 TAATTTCTTC CAGTGCAG CTGAGATAAA chr3L:3868188-3868308 107 5.51e-06 ATTTTTCTCC CAGTGCAG GCATCA chr3R:25004919-25005039 96 5.51e-06 TTATTTTTTC CAGTGCAG CTGCTAAGTC chr2R:10195083-10195203 62 5.51e-06 GAGTTTTTTC CAGTGCAG TGTATCTGCG chrX:2861133-2861253 94 5.51e-06 CAATTTTTTG CAGTGCAG GCGGCACTGC chr3R:15644935-15645055 56 1.09e-05 CTATTTCTCT CAGTGCAC AGATGGACAG chr2L:3598630-3598750 106 1.09e-05 TTTTTTCGCG CAGTGCAC AATCCCG chr3R:9085488-9085608 95 1.09e-05 ATTTTTTTAA CAGTGCAC ACTTTGACTT chrX:4762444-4762564 73 1.09e-05 TTACTTTTGC CAGTGCAC AAAACCCGCC chr2R:25085523-25085643 89 1.69e-05 GAGTACGACA CGGTGCAC CATCTATTGG chrX:16782245-16782365 62 1.69e-05 TTTATTTGGT CGGTGCAC TTTTCACTGG chr2R:7077040-7077160 113 1.69e-05 ATCAGATAGT CGGTGCAC chr3R:30532070-30532190 9 2.72e-05 TCTTACTT CATTGCAG ATATTTTGAT chr3L:5834372-5834492 92 2.72e-05 AGTTACATTA CATTGCAG TTCAAGATTC chr3R:13885181-13885301 28 2.72e-05 AAACATGTTT CATTGCAG CTTGTTCCCT chr3R:29696528-29696648 84 2.72e-05 AGAAGTTTTT CATTGCAG AAAGAACTTT chr3R:10203707-10203827 45 4.78e-05 TGTTTGCTTA CAGTGCAT CCGCCTGACA chr2R:23668819-23668939 77 4.78e-05 GTTGCGATGG CATTGCAC CTGCCTCTAT chr3L:775144-775264 92 4.78e-05 GTATTTTTTT CAGTGCAT AAAACAGAAG chrX:11653181-11653301 96 4.78e-05 TTTTTTTTTG CAGTGCAT CCTCGCCATA chr2L:3882362-3882482 90 5.34e-05 TAATTTCTCG CTGTGCAG CAAATTGCGT chr3R:23941789-23941909 79 5.34e-05 ACTTGACACA CTGTGCAG TGCTGTGCTC chr2R:11095283-11095403 111 6.94e-05 GCATTTCTCT CAGTGTAG TC chr3R:24598748-24598868 94 6.94e-05 AACTTTGTCG CAGTGTAG ATTGTTCAGT chr3R:14589645-14589765 94 7.50e-05 GCCAGTGTAA CGTTGCAG AGTCACTTGC chr3R:13446715-13446835 110 8.54e-05 TCGTTTATTG CAGTGTAC CGC chr3R:28623795-28623915 89 1.08e-04 TAATTTAGTT GAGTGCAC ATTTCTGTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCAS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5857101-5857221 5.5e-06 99_[+1]_13 chr3L:3868188-3868308 5.5e-06 106_[+1]_6 chr3R:25004919-25005039 5.5e-06 95_[+1]_17 chr2R:10195083-10195203 5.5e-06 61_[+1]_51 chrX:2861133-2861253 5.5e-06 93_[+1]_19 chr3R:15644935-15645055 1.1e-05 55_[+1]_57 chr2L:3598630-3598750 1.1e-05 105_[+1]_7 chr3R:9085488-9085608 1.1e-05 94_[+1]_18 chrX:4762444-4762564 1.1e-05 72_[+1]_40 chr2R:25085523-25085643 1.7e-05 88_[+1]_24 chrX:16782245-16782365 1.7e-05 61_[+1]_51 chr2R:7077040-7077160 1.7e-05 112_[+1] chr3R:30532070-30532190 2.7e-05 8_[+1]_104 chr3L:5834372-5834492 2.7e-05 91_[+1]_21 chr3R:13885181-13885301 2.7e-05 27_[+1]_85 chr3R:29696528-29696648 2.7e-05 83_[+1]_29 chr3R:10203707-10203827 4.8e-05 44_[+1]_68 chr2R:23668819-23668939 4.8e-05 76_[+1]_36 chr3L:775144-775264 4.8e-05 91_[+1]_21 chrX:11653181-11653301 4.8e-05 95_[+1]_17 chr2L:3882362-3882482 5.3e-05 89_[+1]_23 chr3R:23941789-23941909 5.3e-05 78_[+1]_34 chr2R:11095283-11095403 6.9e-05 110_[+1]_2 chr3R:24598748-24598868 6.9e-05 93_[+1]_19 chr3R:14589645-14589765 7.5e-05 93_[+1]_19 chr3R:13446715-13446835 8.5e-05 109_[+1]_3 chr3R:28623795-28623915 0.00011 88_[+1]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCAS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGTGCAS width=8 seqs=27 chr3L:5857101-5857221 ( 100) CAGTGCAG 1 chr3L:3868188-3868308 ( 107) CAGTGCAG 1 chr3R:25004919-25005039 ( 96) CAGTGCAG 1 chr2R:10195083-10195203 ( 62) CAGTGCAG 1 chrX:2861133-2861253 ( 94) CAGTGCAG 1 chr3R:15644935-15645055 ( 56) CAGTGCAC 1 chr2L:3598630-3598750 ( 106) CAGTGCAC 1 chr3R:9085488-9085608 ( 95) CAGTGCAC 1 chrX:4762444-4762564 ( 73) CAGTGCAC 1 chr2R:25085523-25085643 ( 89) CGGTGCAC 1 chrX:16782245-16782365 ( 62) CGGTGCAC 1 chr2R:7077040-7077160 ( 113) CGGTGCAC 1 chr3R:30532070-30532190 ( 9) CATTGCAG 1 chr3L:5834372-5834492 ( 92) CATTGCAG 1 chr3R:13885181-13885301 ( 28) CATTGCAG 1 chr3R:29696528-29696648 ( 84) CATTGCAG 1 chr3R:10203707-10203827 ( 45) CAGTGCAT 1 chr2R:23668819-23668939 ( 77) CATTGCAC 1 chr3L:775144-775264 ( 92) CAGTGCAT 1 chrX:11653181-11653301 ( 96) CAGTGCAT 1 chr2L:3882362-3882482 ( 90) CTGTGCAG 1 chr3R:23941789-23941909 ( 79) CTGTGCAG 1 chr2R:11095283-11095403 ( 111) CAGTGTAG 1 chr3R:24598748-24598868 ( 94) CAGTGTAG 1 chr3R:14589645-14589765 ( 94) CGTTGCAG 1 chr3R:13446715-13446835 ( 110) CAGTGTAC 1 chr3R:28623795-28623915 ( 89) GAGTGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCAS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2246 E= 3.2e-002 -1140 248 -224 -1140 127 -1140 -24 -215 -1140 -1140 215 -56 -1140 -1140 -1140 160 -1140 -1140 251 -1140 -1140 236 -1140 -156 163 -1140 -1140 -1140 -1140 110 157 -156 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCAS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 3.2e-002 0.000000 0.962963 0.037037 0.000000 0.777778 0.000000 0.148148 0.074074 0.000000 0.000000 0.777778 0.222222 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.000000 0.111111 1.000000 0.000000 0.000000 0.000000 0.000000 0.370370 0.518519 0.111111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCAS MEME-1 regular expression -------------------------------------------------------------------------------- CA[GT]TGCA[GC] -------------------------------------------------------------------------------- Time 7.40 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCGCCA MEME-2 width = 8 sites = 11 llr = 115 E-value = 7.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCGCCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :3:11::7 pos.-specific C a799:8a1 probability G ::::92:2 matrix T ::1::::: bits 2.5 * * 2.3 * * 2.0 * *** * 1.8 * ***** Relative 1.5 ******* Entropy 1.3 ******* (15.1 bits) 1.0 ******* 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCCCGCCA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:24598748-24598868 59 2.34e-06 CGCTTCCCCG CCCCGCCG CCCCTTCGCA chr2R:8683468-8683588 88 2.34e-06 TGTCATTGCC CCCCGCCG TGCCGTGTTT chr2R:20091323-20091443 54 3.15e-06 ATAAGTTAAT CCCCGCCC TTAGCGCGTC chrX:6663337-6663457 108 7.51e-06 AGTTTTTCCC CACCGCCA CTGTG chr2R:23202113-23202233 74 7.51e-06 TCCTAAATCA CACCGCCA GTATTTCAGT chr2L:8545787-8545907 4 7.51e-06 ATA CCCCGGCA CAGTGGAGCA chr3L:16149973-16150093 76 7.51e-06 TACAGGCTTT CACCGCCA AAGCCCAACA chrX:18837247-18837367 84 7.51e-06 GCTTCCTGTC CCCCGGCA GGTTGATTGT chr2R:11809509-11809629 94 2.07e-05 AAACCGATAT CCCCACCA TTGTGAATGC chr2L:15053172-15053292 64 2.07e-05 TTCAAATATT CCCAGCCA CCACTGTTCG chrX:11653181-11653301 104 2.07e-05 TGCAGTGCAT CCTCGCCA TATACCCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:24598748-24598868 2.3e-06 58_[+2]_54 chr2R:8683468-8683588 2.3e-06 87_[+2]_25 chr2R:20091323-20091443 3.1e-06 53_[+2]_59 chrX:6663337-6663457 7.5e-06 107_[+2]_5 chr2R:23202113-23202233 7.5e-06 73_[+2]_39 chr2L:8545787-8545907 7.5e-06 3_[+2]_109 chr3L:16149973-16150093 7.5e-06 75_[+2]_37 chrX:18837247-18837367 7.5e-06 83_[+2]_29 chr2R:11809509-11809629 2.1e-05 93_[+2]_19 chr2L:15053172-15053292 2.1e-05 63_[+2]_49 chrX:11653181-11653301 2.1e-05 103_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCGCCA width=8 seqs=11 chr3R:24598748-24598868 ( 59) CCCCGCCG 1 chr2R:8683468-8683588 ( 88) CCCCGCCG 1 chr2R:20091323-20091443 ( 54) CCCCGCCC 1 chrX:6663337-6663457 ( 108) CACCGCCA 1 chr2R:23202113-23202233 ( 74) CACCGCCA 1 chr2L:8545787-8545907 ( 4) CCCCGGCA 1 chr3L:16149973-16150093 ( 76) CACCGCCA 1 chrX:18837247-18837367 ( 84) CCCCGGCA 1 chr2R:11809509-11809629 ( 94) CCCCACCA 1 chr2L:15053172-15053292 ( 64) CCCAGCCA 1 chrX:11653181-11653301 ( 104) CCTCGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 7.8e+002 -1010 253 -1010 -1010 -25 207 -1010 -1010 -1010 240 -1010 -185 -183 240 -1010 -1010 -183 -1010 238 -1010 -1010 224 5 -1010 -1010 253 -1010 -1010 117 -92 5 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 7.8e+002 0.000000 1.000000 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 0.000000 0.909091 0.000000 0.090909 0.090909 0.909091 0.000000 0.000000 0.090909 0.000000 0.909091 0.000000 0.000000 0.818182 0.181818 0.000000 0.000000 1.000000 0.000000 0.000000 0.727273 0.090909 0.181818 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCA MEME-2 regular expression -------------------------------------------------------------------------------- C[CA]CCGCCA -------------------------------------------------------------------------------- Time 13.59 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCCACC MEME-3 width = 8 sites = 2 llr = 27 E-value = 1.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCACC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C :a:aa:aa probability G a:a::::: matrix T :::::::: bits 2.5 ***** ** 2.3 ***** ** 2.0 ***** ** 1.8 ***** ** Relative 1.5 ******** Entropy 1.3 ******** (19.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGCCACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:20948074-20948194 108 1.53e-06 TGCTTATACA GCGCCACC TATGT chr2R:12274360-12274480 76 1.53e-06 TAAGGTCAGC GCGCCACC TGGCGACGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:20948074-20948194 1.5e-06 107_[+3]_5 chr2R:12274360-12274480 1.5e-06 75_[+3]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCACC width=8 seqs=2 chr3R:20948074-20948194 ( 108) GCGCCACC 1 chr2R:12274360-12274480 ( 76) GCGCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.4e+004 -765 -765 251 -765 -765 253 -765 -765 -765 -765 251 -765 -765 253 -765 -765 -765 253 -765 -765 162 -765 -765 -765 -765 253 -765 -765 -765 253 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.4e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-3 regular expression -------------------------------------------------------------------------------- GCGCCACC -------------------------------------------------------------------------------- Time 19.79 secs. ******************************************************************************** ******************************************************************************** MOTIF RCACTGWV MEME-4 width = 8 sites = 33 llr = 280 E-value = 1.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCACTGWV MEME-4 Description -------------------------------------------------------------------------------- Simplified A 4:a:3:54 pos.-specific C :a:a::12 probability G 6::::a:4 matrix T ::::7:4: bits 2.5 * * * 2.3 * * * 2.0 * * * 1.8 * * * Relative 1.5 *** * Entropy 1.3 **** * (12.2 bits) 1.0 **** * 0.8 ****** * 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCACTGAA consensus A A TG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACTGWV MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3435174-3435294 18 5.51e-06 GTGTGCGTGT GCACTGAG CAAAATTCCA chr2R:21909989-21910109 4 5.51e-06 AAG GCACTGAG AAAAATCTGG chr2L:3587408-3587528 10 1.11e-05 CAAGGAAAT GCACTGTG AGAAAATATA chr2R:6786798-6786918 71 1.11e-05 CGTTATGTAC GCACTGTG TGAGTTGGCG chr3L:11334061-11334181 57 2.67e-05 TCTCGGACTT GCACTGAA AAAAATGCAT chr2L:7339727-7339847 62 2.67e-05 TGATTTGTTT GCACTGAC CCGCGGGGAA chr3R:14077105-14077225 41 2.67e-05 ATGTGTAAAT GCACTGAC AAAAACGGGG chr3L:19674388-19674508 47 2.67e-05 CAAGTACACT GCACTGAA AAAAGAGTAA chr2R:20572545-20572665 98 2.67e-05 AATTAAAGAG GCACTGAA GATTCCTATG chr3R:11806880-11807000 78 2.67e-05 TGCCAATTAT GCACTGAA AAGTAATAAT chr2L:6461631-6461751 69 4.80e-05 TTTATTTCAC GCACTGTC GGGCGAAAAT chr3R:8922959-8923079 21 4.80e-05 CCGATCCTAA GCACTGTA AAAAAATATT chr3L:6220321-6220441 23 5.35e-05 TTACTGACTT GCACAGTG AGGCAAGTCC chr2L:3100903-3101023 7 5.35e-05 ATGCTG GCACAGTG GTTAAGATAT chr2L:1427899-1428019 5 5.35e-05 CATC GCACAGTG GGACGAAAGT chr2L:12528381-12528501 107 5.35e-05 CGCACCGCAA GCACAGTG GGGCAG chrX:20507858-20507978 8 6.37e-05 CGTCCCT ACACTGAG AGAAAGGGCT chr3L:1702663-1702783 6 6.37e-05 CCGGC ACACTGAG AGAAACAAGG chr3L:5988824-5988944 2 7.90e-05 T GCACAGAA AAAAAATTGG chr3R:16769518-16769638 5 7.90e-05 ATAT GCACAGAA AAAAATTAAT chr2L:15432353-15432473 28 9.23e-05 GGTAAGTGAT ACACTGTG AAAACTATTG chr2R:13968181-13968301 84 1.08e-04 GCGCCTAACA GCACAGTC CGTGCTGCTG chr2L:1428414-1428534 8 1.37e-04 CTCAGAT ACACTGAA CAAAAATTTA chr2L:3444894-3445014 5 1.37e-04 TCCT ACACTGAA CGAAAATTCA chr3L:765919-766039 14 1.37e-04 CTGTCATTGA ACACTGAA GAAATGAAAC chr3L:94217-94337 25 1.37e-04 TAAAATTTGG ACACTGAC CCCTAGTAAC chr3L:16760386-16760506 36 1.47e-04 CATAAGTTAC ACACAGAG TTCCCAACGA chrX:17510678-17510798 13 1.84e-04 TGTGAATAAT ACACTGTA TTTGTTGTAA chrX:15591821-15591941 61 1.84e-04 TAAACAGGAG GCACTGCC TCTGCTTATA chrX:3538933-3539053 24 1.84e-04 CTTGGCTCAA ACACTGTA TAGTGTTTAA chr3L:11286764-11286884 19 1.84e-04 ATGGGATTAA GCACTGCC ATTGTATTGC chr2L:858245-858365 5 1.97e-04 ACAT ACACAGTG TGCTGATCAT chr3R:28556534-28556654 6 2.26e-04 TAATA ACACAGAA ATAACATTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACTGWV MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3435174-3435294 5.5e-06 17_[+4]_95 chr2R:21909989-21910109 5.5e-06 3_[+4]_109 chr2L:3587408-3587528 1.1e-05 9_[+4]_103 chr2R:6786798-6786918 1.1e-05 70_[+4]_42 chr3L:11334061-11334181 2.7e-05 56_[+4]_56 chr2L:7339727-7339847 2.7e-05 61_[+4]_51 chr3R:14077105-14077225 2.7e-05 40_[+4]_72 chr3L:19674388-19674508 2.7e-05 46_[+4]_66 chr2R:20572545-20572665 2.7e-05 97_[+4]_15 chr3R:11806880-11807000 2.7e-05 77_[+4]_35 chr2L:6461631-6461751 4.8e-05 68_[+4]_44 chr3R:8922959-8923079 4.8e-05 20_[+4]_92 chr3L:6220321-6220441 5.4e-05 22_[+4]_90 chr2L:3100903-3101023 5.4e-05 6_[+4]_106 chr2L:1427899-1428019 5.4e-05 4_[+4]_108 chr2L:12528381-12528501 5.4e-05 106_[+4]_6 chrX:20507858-20507978 6.4e-05 7_[+4]_105 chr3L:1702663-1702783 6.4e-05 5_[+4]_107 chr3L:5988824-5988944 7.9e-05 1_[+4]_111 chr3R:16769518-16769638 7.9e-05 4_[+4]_108 chr2L:15432353-15432473 9.2e-05 27_[+4]_85 chr2R:13968181-13968301 0.00011 83_[+4]_29 chr2L:1428414-1428534 0.00014 7_[+4]_105 chr2L:3444894-3445014 0.00014 4_[+4]_108 chr3L:765919-766039 0.00014 13_[+4]_99 chr3L:94217-94337 0.00014 24_[+4]_88 chr3L:16760386-16760506 0.00015 35_[+4]_77 chrX:17510678-17510798 0.00018 12_[+4]_100 chrX:15591821-15591941 0.00018 60_[+4]_52 chrX:3538933-3539053 0.00018 23_[+4]_89 chr3L:11286764-11286884 0.00018 18_[+4]_94 chr2L:858245-858365 0.0002 4_[+4]_108 chr3R:28556534-28556654 0.00023 5_[+4]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACTGWV MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCACTGWV width=8 seqs=33 chr2L:3435174-3435294 ( 18) GCACTGAG 1 chr2R:21909989-21910109 ( 4) GCACTGAG 1 chr2L:3587408-3587528 ( 10) GCACTGTG 1 chr2R:6786798-6786918 ( 71) GCACTGTG 1 chr3L:11334061-11334181 ( 57) GCACTGAA 1 chr2L:7339727-7339847 ( 62) GCACTGAC 1 chr3R:14077105-14077225 ( 41) GCACTGAC 1 chr3L:19674388-19674508 ( 47) GCACTGAA 1 chr2R:20572545-20572665 ( 98) GCACTGAA 1 chr3R:11806880-11807000 ( 78) GCACTGAA 1 chr2L:6461631-6461751 ( 69) GCACTGTC 1 chr3R:8922959-8923079 ( 21) GCACTGTA 1 chr3L:6220321-6220441 ( 23) GCACAGTG 1 chr2L:3100903-3101023 ( 7) GCACAGTG 1 chr2L:1427899-1428019 ( 5) GCACAGTG 1 chr2L:12528381-12528501 ( 107) GCACAGTG 1 chrX:20507858-20507978 ( 8) ACACTGAG 1 chr3L:1702663-1702783 ( 6) ACACTGAG 1 chr3L:5988824-5988944 ( 2) GCACAGAA 1 chr3R:16769518-16769638 ( 5) GCACAGAA 1 chr2L:15432353-15432473 ( 28) ACACTGTG 1 chr2R:13968181-13968301 ( 84) GCACAGTC 1 chr2L:1428414-1428534 ( 8) ACACTGAA 1 chr2L:3444894-3445014 ( 5) ACACTGAA 1 chr3L:765919-766039 ( 14) ACACTGAA 1 chr3L:94217-94337 ( 25) ACACTGAC 1 chr3L:16760386-16760506 ( 36) ACACAGAG 1 chrX:17510678-17510798 ( 13) ACACTGTA 1 chrX:15591821-15591941 ( 61) GCACTGCC 1 chrX:3538933-3539053 ( 24) ACACTGTA 1 chr3L:11286764-11286884 ( 19) GCACTGCC 1 chr2L:858245-858365 ( 5) ACACAGTG 1 chr3R:28556534-28556654 ( 6) ACACAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACTGWV MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0849 E= 1.9e+004 17 -1169 186 -1169 -1169 253 -1169 -1169 163 -1169 -1169 -1169 -1169 253 -1169 -1169 -9 -1169 -1169 108 -1169 -1169 251 -1169 75 -151 -1169 26 28 30 117 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACTGWV MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.9e+004 0.363636 0.000000 0.636364 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.303030 0.000000 0.000000 0.696970 0.000000 0.000000 1.000000 0.000000 0.545455 0.060606 0.000000 0.393939 0.393939 0.212121 0.393939 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACTGWV MEME-4 regular expression -------------------------------------------------------------------------------- [GA]CAC[TA]G[AT][AGC] -------------------------------------------------------------------------------- Time 26.03 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCRCCGC MEME-5 width = 8 sites = 2 llr = 26 E-value = 3.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCRCCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::5:::: pos.-specific C a:a:aa:a probability G :a:5::a: matrix T :::::::: bits 2.5 *** **** 2.3 *** **** 2.0 *** **** 1.8 *** **** Relative 1.5 *** **** Entropy 1.3 *** **** (18.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCACCGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCRCCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:14789806-14789926 101 8.31e-07 AGCACTATTT CGCGCCGC TGCTCAGCAC chr2L:12528381-12528501 97 2.36e-06 GTTCGCTGTC CGCACCGC AAGCACAGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCRCCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14789806-14789926 8.3e-07 100_[+5]_12 chr2L:12528381-12528501 2.4e-06 96_[+5]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCRCCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCRCCGC width=8 seqs=2 chr3L:14789806-14789926 ( 101) CGCGCCGC 1 chr2L:12528381-12528501 ( 97) CGCACCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCRCCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 3.4e+004 -765 253 -765 -765 -765 -765 251 -765 -765 253 -765 -765 63 -765 151 -765 -765 253 -765 -765 -765 253 -765 -765 -765 -765 251 -765 -765 253 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCRCCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.4e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCRCCGC MEME-5 regular expression -------------------------------------------------------------------------------- CGC[AG]CCGC -------------------------------------------------------------------------------- Time 32.17 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19173133-19173253 7.67e-01 120 chr2L:15432353-15432473 3.39e-01 27_[+4(9.23e-05)]_85 chr2R:21909989-21910109 1.09e-02 3_[+4(5.51e-06)]_109 chrX:13630401-13630521 9.68e-01 120 chr2L:11394271-11394391 9.26e-01 120 chr2L:12528381-12528501 2.53e-05 96_[+5(2.36e-06)]_2_[+4(5.35e-05)]_\ 6 chrX:11653181-11653301 1.27e-03 95_[+1(4.78e-05)]_[+2(2.07e-05)]_9 chr3R:15816440-15816560 6.71e-01 120 chr3L:11155439-11155559 1.67e-01 120 chr2L:7155046-7155166 5.53e-01 120 chr3L:11286764-11286884 2.90e-03 120 chr3R:11806880-11807000 7.44e-02 77_[+4(2.67e-05)]_35 chr3L:8763297-8763417 3.07e-01 120 chr2L:8423930-8424050 6.37e-01 120 chr3L:10679788-10679908 4.79e-01 120 chr3R:23941789-23941909 2.02e-02 78_[+1(5.34e-05)]_34 chr3L:295174-295294 4.67e-01 120 chr2L:1145077-1145197 7.71e-01 120 chr3L:14172631-14172751 9.31e-01 120 chr3R:10636167-10636287 8.32e-01 120 chr2L:1427899-1428019 9.73e-04 4_[+4(5.35e-05)]_108 chr2L:15254382-15254502 1.00e+00 120 chr2R:21851712-21851832 9.01e-01 120 chr2L:7266137-7266257 3.01e-01 120 chr2L:3435174-3435294 1.09e-02 17_[+4(5.51e-06)]_95 chr2L:4055565-4055685 8.85e-01 120 chr2L:15053172-15053292 1.58e-02 63_[+2(2.07e-05)]_49 chr2L:18505604-18505724 9.56e-01 120 chr2R:6786798-6786918 7.51e-03 70_[+4(1.11e-05)]_42 chr2L:7149063-7149183 9.33e-01 120 chr3R:23315769-23315889 8.73e-01 120 chrX:4498409-4498529 7.03e-01 120 chr2L:3356511-3356631 6.37e-01 120 chr2R:20572545-20572665 7.95e-02 97_[+4(2.67e-05)]_15 chr3L:6086197-6086317 8.82e-01 120 chr2L:1655847-1655967 2.64e-01 120 chr2R:7141916-7142036 9.45e-01 120 chr2R:19276177-19276297 9.22e-01 120 chr2R:20091323-20091443 2.28e-03 53_[+2(3.15e-06)]_59 chr3R:28623795-28623915 2.86e-01 120 chr2L:12351029-12351149 8.74e-01 120 chrX:3538933-3539053 1.54e-01 120 chr3R:13446715-13446835 7.71e-02 109_[+1(8.54e-05)]_3 chr3R:26121973-26122093 5.10e-01 120 chr2R:20529468-20529588 8.18e-01 120 chr3L:1167087-1167207 6.28e-02 120 chrX:4762444-4762564 1.28e-04 72_[+1(1.09e-05)]_40 chr2L:11950039-11950159 8.72e-01 120 chr2L:6307036-6307156 8.27e-01 120 chrX:4172292-4172412 9.82e-01 120 chrX:19348957-19349077 7.57e-01 120 chr3R:9085488-9085608 7.48e-02 94_[+1(1.09e-05)]_18 chr2L:4335292-4335412 2.68e-01 120 chr3L:775144-775264 8.49e-02 91_[+1(4.78e-05)]_21 chr2L:11331766-11331886 2.94e-01 120 chrX:19146446-19146566 8.86e-01 120 chr3R:26853850-26853970 9.22e-02 120 chr2R:8683468-8683588 2.88e-04 87_[+2(2.34e-06)]_25 chr3R:15293793-15293913 7.40e-01 120 chr2R:12537626-12537746 4.75e-01 120 chr3R:24007996-24008116 8.63e-01 120 chr3L:19147192-19147312 4.30e-01 120 chr2R:13999345-13999465 9.92e-01 120 chr2R:22538896-22539016 2.86e-01 120 chr3R:26436686-26436806 1.00e+00 120 chrX:2861133-2861253 1.59e-03 93_[+1(5.51e-06)]_19 chr2L:19200432-19200552 6.50e-01 120 chrX:8259965-8260085 4.21e-01 120 chr2L:12520424-12520544 6.37e-01 120 chr2L:19898655-19898775 9.20e-01 120 chrX:8542871-8542991 9.91e-01 120 chr3R:16704352-16704472 1.38e-02 22_[+2(6.03e-05)]_90 chr2L:498303-498423 1.56e-01 120 chr3R:8920246-8920366 9.56e-01 120 chr3R:13469372-13469492 2.67e-01 120 chr3L:10337728-10337848 2.02e-01 120 chrX:18921076-18921196 9.98e-01 120 chrX:8601282-8601402 1.28e-02 120 chrX:8493612-8493732 7.37e-01 120 chr3R:16769518-16769638 7.73e-02 4_[+4(7.90e-05)]_108 chr3L:94217-94337 2.97e-01 120 chr2L:7073177-7073297 9.80e-01 120 chrX:19164946-19165066 3.35e-01 120 chr3L:16760386-16760506 1.42e-01 120 chr2R:23668819-23668939 7.30e-03 76_[+1(4.78e-05)]_36 chrX:6643043-6643163 7.61e-01 120 chrX:18837247-18837367 2.60e-03 83_[+2(7.51e-06)]_29 chr3R:29696528-29696648 1.71e-01 83_[+1(2.72e-05)]_29 chr3L:7862673-7862793 7.22e-01 120 chr3L:16149973-16150093 7.64e-03 75_[+2(7.51e-06)]_37 chrX:6614354-6614474 6.46e-01 120 chr2R:10195083-10195203 2.07e-02 61_[+1(5.51e-06)]_51 chr2L:8545787-8545907 1.07e-04 3_[+2(7.51e-06)]_109 chr2L:838179-838299 5.58e-01 120 chr3R:6182662-6182782 6.71e-01 120 chr2L:11338397-11338517 9.17e-01 120 chrX:3403546-3403666 7.91e-01 120 chr3R:14589645-14589765 6.66e-03 93_[+1(7.50e-05)]_19 chrX:20631286-20631406 9.66e-01 120 chr3L:11408938-11409058 1.00e+00 120 chrX:10600660-10600780 3.29e-02 120 chr3R:29089808-29089928 9.08e-01 120 chr2L:7144216-7144336 8.98e-01 120 chr3L:19674388-19674508 3.72e-03 46_[+4(2.67e-05)]_66 chr3R:24598748-24598868 8.00e-08 58_[+2(2.34e-06)]_27_[+1(6.94e-05)]_\ 19 chr3R:16276265-16276385 6.73e-01 120 chr3R:14077105-14077225 1.50e-01 40_[+4(2.67e-05)]_72 chr3L:18357790-18357910 4.13e-01 120 chr3R:28556534-28556654 1.09e-02 120 chr3L:5819465-5819585 7.89e-01 120 chrX:3136816-3136936 6.68e-02 120 chr3L:15794423-15794543 9.96e-01 120 chr2L:3856434-3856554 5.27e-01 120 chr3L:5188338-5188458 2.82e-02 93_[+5(8.35e-05)]_19 chr3L:20630679-20630799 8.16e-01 120 chr2L:3100903-3101023 1.62e-01 6_[+4(5.35e-05)]_106 chrX:4581873-4581993 9.82e-01 120 chrX:14622344-14622464 8.94e-01 120 chr3L:1702663-1702783 1.75e-01 5_[+4(6.37e-05)]_107 chr2R:17514134-17514254 7.56e-01 120 chr3L:14789806-14789926 2.65e-04 100_[+5(8.31e-07)]_12 chr2R:23202113-23202233 1.47e-03 73_[+2(7.51e-06)]_39 chr3R:8922959-8923079 5.79e-03 20_[+4(4.80e-05)]_92 chr2R:19128034-19128154 4.19e-01 120 chr3R:13885181-13885301 5.54e-02 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49_[+3(5.58e-05)]_31_[+1(1.69e-05)]_\ 24 chr3R:20948074-20948194 3.85e-04 107_[+3(1.53e-06)]_5 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************