******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/caup.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:5884980-5885100 1.0000 120 chr2R:15515722-15515842 1.0000 120 chr3R:22108470-22108590 1.0000 120 chr2R:13909083-13909203 1.0000 120 chr2R:21091877-21091997 1.0000 120 chr2L:19098712-19098832 1.0000 120 chr3L:15268886-15269006 1.0000 120 chr2R:22644666-22644786 1.0000 120 chr2R:17272612-17272732 1.0000 120 chr3L:16670367-16670487 1.0000 120 chr2L:307235-307355 1.0000 120 chrX:13313269-13313389 1.0000 120 chr3R:17966151-17966271 1.0000 120 chr3R:22057234-22057354 1.0000 120 chr3L:17791640-17791760 1.0000 120 chr3L:11580078-11580198 1.0000 120 chr2R:11792758-11792878 1.0000 120 chr3L:4025868-4025988 1.0000 120 chr3L:3932848-3932968 1.0000 120 chr3L:14432353-14432473 1.0000 120 chr3L:18633238-18633358 1.0000 120 chr3L:20830525-20830645 1.0000 120 chr2L:369981-370101 1.0000 120 chr3R:5746777-5746897 1.0000 120 chr2R:18351899-18352019 1.0000 120 chrX:3282091-3282211 1.0000 120 chr3L:4130867-4130987 1.0000 120 chr2R:15480303-15480423 1.0000 120 chr3R:5107063-5107183 1.0000 120 chr3L:19169162-19169282 1.0000 120 chr2L:5790902-5791022 1.0000 120 chr2L:17388192-17388312 1.0000 120 chr3L:15548946-15549066 1.0000 120 chr3R:18296248-18296368 1.0000 120 chr2R:22062467-22062587 1.0000 120 chr2R:8734608-8734728 1.0000 120 chrX:7198909-7199029 1.0000 120 chrX:515832-515952 1.0000 120 chr2L:6465639-6465759 1.0000 120 chr2R:12218890-12219010 1.0000 120 chr2R:23615227-23615347 1.0000 120 chr2R:14494684-14494804 1.0000 120 chr3R:9891732-9891852 1.0000 120 chr2R:18774913-18775033 1.0000 120 chrX:11858562-11858682 1.0000 120 chr2R:7749764-7749884 1.0000 120 chr3L:12588988-12589108 1.0000 120 chr3L:13912906-13913026 1.0000 120 chrX:3157428-3157548 1.0000 120 chr3R:12657131-12657251 1.0000 120 chr3L:2745904-2746024 1.0000 120 chr2R:22194948-22195068 1.0000 120 chr3R:10688940-10689060 1.0000 120 chr3L:329279-329399 1.0000 120 chr3L:11889031-11889151 1.0000 120 chr2L:9530111-9530231 1.0000 120 chr3R:19223563-19223683 1.0000 120 chr2L:6343260-6343380 1.0000 120 chr3L:156687-156807 1.0000 120 chr3R:30325621-30325741 1.0000 120 chr3L:20901124-20901244 1.0000 120 chr3R:20273699-20273819 1.0000 120 chr3L:12350457-12350577 1.0000 120 chrX:16385966-16386086 1.0000 120 chr2L:14554636-14554756 1.0000 120 chr3L:12695817-12695937 1.0000 120 chr3R:9932601-9932721 1.0000 120 chr2R:22649938-22650058 1.0000 120 chr3L:7782360-7782480 1.0000 120 chr3L:17003668-17003788 1.0000 120 chr3R:23803801-23803921 1.0000 120 chrX:6592198-6592318 1.0000 120 chr3L:11531458-11531578 1.0000 120 chr2R:21082673-21082793 1.0000 120 chrX:13626020-13626140 1.0000 120 chr2R:18539963-18540083 1.0000 120 chr3L:3346154-3346274 1.0000 120 chrX:5664352-5664472 1.0000 120 chr2L:9943659-9943779 1.0000 120 chr2L:9509789-9509909 1.0000 120 chr3R:26952303-26952423 1.0000 120 chr3R:29651608-29651728 1.0000 120 chr2R:22162313-22162433 1.0000 120 chr3L:2144450-2144570 1.0000 120 chr3R:21158745-21158865 1.0000 120 chr3R:31287597-31287717 1.0000 120 chr2R:23062554-23062674 1.0000 120 chr3L:15814169-15814289 1.0000 120 chrX:18082901-18083021 1.0000 120 chr3L:12802693-12802813 1.0000 120 chr3L:19132738-19132858 1.0000 120 chr3R:11312502-11312622 1.0000 120 chr3R:9701457-9701577 1.0000 120 chr3R:31134145-31134265 1.0000 120 chr3R:22121331-22121451 1.0000 120 chr2L:18556527-18556647 1.0000 120 chr3R:9390309-9390429 1.0000 120 chr3L:12606401-12606521 1.0000 120 chr3R:31311125-31311245 1.0000 120 chr3L:917382-917502 1.0000 120 chr2R:7745200-7745320 1.0000 120 chr3R:24474914-24475034 1.0000 120 chrX:8409260-8409380 1.0000 120 chr3R:26494357-26494477 1.0000 120 chrX:7227446-7227566 1.0000 120 chr2R:22247716-22247836 1.0000 120 chr2L:2171749-2171869 1.0000 120 chrX:10462092-10462212 1.0000 120 chr3R:22464644-22464764 1.0000 120 chr3R:15093008-15093128 1.0000 120 chr3L:8689832-8689952 1.0000 120 chr3L:3755826-3755946 1.0000 120 chr3L:17310612-17310732 1.0000 120 chr3R:27986975-27987095 1.0000 120 chr2L:8894417-8894537 1.0000 120 chr3L:12045568-12045688 1.0000 120 chr2L:20840580-20840700 1.0000 120 chrX:13822191-13822311 1.0000 120 chr2L:5096964-5097084 1.0000 120 chr2L:19285645-19285765 1.0000 120 chr2R:18290148-18290268 1.0000 120 chr3L:18898181-18898301 1.0000 120 chr3R:26588209-26588329 1.0000 120 chr3R:29891314-29891434 1.0000 120 chr3R:23176831-23176951 1.0000 120 chrX:966970-967090 1.0000 120 chr2L:2168316-2168436 1.0000 120 chr3R:25275450-25275570 1.0000 120 chr3L:8347491-8347611 1.0000 120 chr3L:11049546-11049666 1.0000 120 chr3R:9874644-9874764 1.0000 120 chr2L:2872700-2872820 1.0000 120 chr2L:14013568-14013688 1.0000 120 chr2L:892599-892719 1.0000 120 chr3L:3543831-3543951 1.0000 120 chr3L:10362876-10362996 1.0000 120 chr2R:22657067-22657187 1.0000 120 chr2R:18605450-18605570 1.0000 120 chr3L:14028578-14028698 1.0000 120 chr2L:10143486-10143606 1.0000 120 chr3L:14804776-14804896 1.0000 120 chr3R:5302147-5302267 1.0000 120 chr2R:22312728-22312848 1.0000 120 chr2R:21178790-21178910 1.0000 120 chr2R:13586406-13586526 1.0000 120 chr3L:11772727-11772847 1.0000 120 chrX:11391672-11391792 1.0000 120 chr3L:19845631-19845751 1.0000 120 chrX:11081359-11081479 1.0000 120 chr2L:1636669-1636789 1.0000 120 chr2L:16315130-16315250 1.0000 120 chr2R:21549079-21549199 1.0000 120 chr2R:11712223-11712343 1.0000 120 chrX:17582783-17582903 1.0000 120 chrX:14169207-14169327 1.0000 120 chr3R:30802265-30802385 1.0000 120 chr3R:26280522-26280642 1.0000 120 chr3L:2913419-2913539 1.0000 120 chr2L:18136701-18136821 1.0000 120 chr2R:7070908-7071028 1.0000 120 chr2R:23578554-23578674 1.0000 120 chr2L:8100762-8100882 1.0000 120 chr3L:11258531-11258651 1.0000 120 chrX:16573825-16573945 1.0000 120 chrX:12947785-12947905 1.0000 120 chr2L:13461062-13461182 1.0000 120 chr2R:17586085-17586205 1.0000 120 chr3L:1794288-1794408 1.0000 120 chr3L:22471742-22471862 1.0000 120 chr2L:937044-937164 1.0000 120 chr3L:21036379-21036499 1.0000 120 chrX:10602529-10602649 1.0000 120 chr2R:18693235-18693355 1.0000 120 chr2R:13541460-13541580 1.0000 120 chr2L:13082325-13082445 1.0000 120 chr3L:4521993-4522113 1.0000 120 chrX:12723504-12723624 1.0000 120 chr3R:22133794-22133914 1.0000 120 chr3L:14672789-14672909 1.0000 120 chr3L:3078943-3079063 1.0000 120 chr3L:8584220-8584340 1.0000 120 chr2R:7150673-7150793 1.0000 120 chrX:10184793-10184913 1.0000 120 chr2L:8738364-8738484 1.0000 120 chr2L:7518967-7519087 1.0000 120 chr3L:17656112-17656232 1.0000 120 chr3L:332215-332335 1.0000 120 chr3R:19924452-19924572 1.0000 120 chr2L:8692588-8692708 1.0000 120 chr2R:18172021-18172141 1.0000 120 chrX:18494324-18494444 1.0000 120 chr3L:13236749-13236869 1.0000 120 chr3R:22147623-22147743 1.0000 120 chrX:16580071-16580191 1.0000 120 chr3L:19630873-19630993 1.0000 120 chr3L:21321977-21322097 1.0000 120 chr3L:10694078-10694198 1.0000 120 chr3L:20731029-20731149 1.0000 120 chr2L:9235650-9235770 1.0000 120 chrX:4262797-4262917 1.0000 120 chr2R:13008294-13008414 1.0000 120 chr3R:21373545-21373665 1.0000 120 chr2L:18625577-18625697 1.0000 120 chrX:13642102-13642222 1.0000 120 chr2L:12369704-12369824 1.0000 120 chr2L:20807738-20807858 1.0000 120 chr3L:8741355-8741475 1.0000 120 chr3L:17659274-17659394 1.0000 120 chr3R:13051377-13051497 1.0000 120 chr2R:14481213-14481333 1.0000 120 chr2R:13482189-13482309 1.0000 120 chr2R:23611355-23611475 1.0000 120 chr3R:28556531-28556651 1.0000 120 chr3R:28677019-28677139 1.0000 120 chrX:17077890-17078010 1.0000 120 chr2R:17848901-17849021 1.0000 120 chr2R:24657158-24657278 1.0000 120 chr3L:4353832-4353952 1.0000 120 chr3R:26105941-26106061 1.0000 120 chr3L:17907695-17907815 1.0000 120 chr2L:484358-484478 1.0000 120 chr2L:3803924-3804044 1.0000 120 chr3R:19627974-19628094 1.0000 120 chr2L:5196832-5196952 1.0000 120 chr3R:7892621-7892741 1.0000 120 chr2R:14267833-14267953 1.0000 120 chr2L:19141009-19141129 1.0000 120 chr2R:10023864-10023984 1.0000 120 chr3R:21865198-21865318 1.0000 120 chr2L:8694439-8694559 1.0000 120 chr2R:23725967-23726087 1.0000 120 chr2L:3280731-3280851 1.0000 120 chr2R:16170861-16170981 1.0000 120 chr2R:21663176-21663296 1.0000 120 chr3R:18918221-18918341 1.0000 120 chr2L:1207582-1207702 1.0000 120 chr3L:15977697-15977817 1.0000 120 chr2R:7748166-7748286 1.0000 120 chr2R:11435176-11435296 1.0000 120 chrX:16655886-16656006 1.0000 120 chr3R:20257432-20257552 1.0000 120 chr3R:16005227-16005347 1.0000 120 chr2L:7940783-7940903 1.0000 120 chr3R:14875676-14875796 1.0000 120 chr2L:10552944-10553064 1.0000 120 chr3L:14190142-14190262 1.0000 120 chr3L:6216101-6216221 1.0000 120 chr3L:15999685-15999805 1.0000 120 chr2L:16647853-16647973 1.0000 120 chrX:2011746-2011866 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_caup/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/caup.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.299 C 0.201 G 0.203 T 0.298 Background letter frequencies (from file dataset with add-one prior applied): A 0.299 C 0.201 G 0.203 T 0.298 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCAAACAA MEME-1 width = 8 sites = 41 llr = 348 E-value = 1.8e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::aaa:a7 pos.-specific C :7:::9:1 probability G a::::::1 matrix T :3:::1:1 bits 2.3 2.1 * 1.9 * * *** 1.6 * * *** Relative 1.4 ******* Entropy 1.2 ******* (12.3 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCAAACAA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:15999685-15999805 58 1.96e-05 GAAGAAGACG GCAAACAA AGTTAATGGC chr3L:13236749-13236869 71 1.96e-05 AACTCAGCAG GCAAACAA ATGGCAAGGG chr2R:18172021-18172141 98 1.96e-05 TTTATAGGCG GCAAACAA AGAGCGCAGT chr2L:7518967-7519087 4 1.96e-05 CGA GCAAACAA GAACATATAA chr2L:13082325-13082445 70 1.96e-05 GTGTCAATGT GCAAACAA AGCCGCCAAA chr3L:3755826-3755946 18 1.96e-05 AACCAACTGG GCAAACAA GTTGGAGAAC chr3L:8689832-8689952 59 1.96e-05 aaacaaataa gcaaacaa acaaacaaGC chr2L:18556527-18556647 44 1.96e-05 TTACCATAAG GCAAACAA ATGAATATAT chrX:515832-515952 95 1.96e-05 TGTGTacaaa gcaaacaa agaaatcaaa chrX:3282091-3282211 85 1.96e-05 TTTTTGAAAC GCAAACAA ATGTCAAGCG chr3L:4025868-4025988 54 1.96e-05 GTTTATCAGC GCAAACAA AAGCCGTCGA chr2R:11792758-11792878 48 1.96e-05 GAACAGGCAA GCAAACAA CATGAAATAC chr3R:22147623-22147743 74 4.87e-05 ATACACGTTG GTAAACAA AGGGCAAGGA chr3L:14672789-14672909 74 4.87e-05 TCGGCGTACG GTAAACAA CAACTGCTGC chr2R:13541460-13541580 30 4.87e-05 TTTGATCTGT GTAAACAA TAAACGCCTA chr2R:18605450-18605570 112 4.87e-05 TTGGCCAAAG GTAAACAA T chr3R:26588209-26588329 42 4.87e-05 CATGTATTGT GTAAACAA GGTTTTTAGT chr3R:27986975-27987095 33 4.87e-05 TTAAAGTTGT GTAAACAA GCCCACTGAT chr2R:23615227-23615347 48 4.87e-05 GCAGTCCCGA GTAAACAA TTAAAAACCC chr3L:4130867-4130987 66 4.87e-05 CGGGGCACAT GTAAACAA TAACTGGGAC chr3L:11049546-11049666 40 6.20e-05 AAATCCGAAA GCAAACAG GGGAGCACCC chr3L:2144450-2144570 24 6.20e-05 TTGATGGAGA GCAAACAG CATTAATGTA chr2R:10023864-10023984 107 7.51e-05 CGCACGGGGA GCAAACAC AAATGG chr2L:20807738-20807858 71 7.51e-05 TTTACAGCAG GCAAACAC ACCCACTTTG chr2L:18136701-18136821 47 7.51e-05 TATGTAGTGT GCAAACAC AAATATTAGC chr3L:15548946-15549066 41 7.51e-05 AATATGAAAT GCAAACAC AAGTGCAACT chrX:10184793-10184913 111 9.47e-05 ATCATCATTT GCAAACAT TT chr3L:11889031-11889151 76 9.47e-05 GCTGATAAGG GCAAACAT ATTTTCACAA chr2R:15480303-15480423 17 9.47e-05 AAACCAGTTT GCAAACAT GTACATGGCT chr3R:30802265-30802385 42 1.08e-04 CCGGGGTTGA GCACACAA GCCATAGATG chr3L:8347491-8347611 72 1.08e-04 CGCCAGCTGT GCACACAA CGTCGCGGTC chr2R:16170861-16170981 1 1.57e-04 . GTAAACAG TGCTCAAAGG chrX:12723504-12723624 80 1.57e-04 GCCGCGTAAA GCAAATAA TACACAATAA chr2R:7070908-7071028 24 1.57e-04 GGTCCGCCAT GTAAACAG AAGATACTCA chr2L:9509789-9509909 50 1.57e-04 CCGAAAGCAA GTAAACAG GGAATGTGAT chr3L:17003668-17003788 87 1.57e-04 ACAATATTAA GCAAATAA ATACATACAT chr3L:156687-156807 80 1.57e-04 CCAGATATTT GCAAATAA AATGTCAACA chr2R:13909083-13909203 56 1.57e-04 AGGTGAAGGG GCAAATAA TTCGCAAGTG chr3R:17966151-17966271 37 2.05e-04 TGCCTCTCAT GTAAACAT TTGCATTATG chr3L:4353832-4353952 60 2.34e-04 TCCCATCCGA ACAAACAA TGTCGCATGC chr3L:20731029-20731149 61 2.34e-04 ATATGGCTAT ACAAACAA ACACCGACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:15999685-15999805 2e-05 57_[+1]_55 chr3L:13236749-13236869 2e-05 70_[+1]_42 chr2R:18172021-18172141 2e-05 97_[+1]_15 chr2L:7518967-7519087 2e-05 3_[+1]_109 chr2L:13082325-13082445 2e-05 69_[+1]_43 chr3L:3755826-3755946 2e-05 17_[+1]_95 chr3L:8689832-8689952 2e-05 58_[+1]_54 chr2L:18556527-18556647 2e-05 43_[+1]_69 chrX:515832-515952 2e-05 94_[+1]_18 chrX:3282091-3282211 2e-05 84_[+1]_28 chr3L:4025868-4025988 2e-05 53_[+1]_59 chr2R:11792758-11792878 2e-05 47_[+1]_65 chr3R:22147623-22147743 4.9e-05 73_[+1]_39 chr3L:14672789-14672909 4.9e-05 73_[+1]_39 chr2R:13541460-13541580 4.9e-05 29_[+1]_83 chr2R:18605450-18605570 4.9e-05 111_[+1]_1 chr3R:26588209-26588329 4.9e-05 41_[+1]_71 chr3R:27986975-27987095 4.9e-05 32_[+1]_80 chr2R:23615227-23615347 4.9e-05 47_[+1]_65 chr3L:4130867-4130987 4.9e-05 65_[+1]_47 chr3L:11049546-11049666 6.2e-05 39_[+1]_73 chr3L:2144450-2144570 6.2e-05 23_[+1]_89 chr2R:10023864-10023984 7.5e-05 106_[+1]_6 chr2L:20807738-20807858 7.5e-05 70_[+1]_42 chr2L:18136701-18136821 7.5e-05 46_[+1]_66 chr3L:15548946-15549066 7.5e-05 40_[+1]_72 chrX:10184793-10184913 9.5e-05 110_[+1]_2 chr3L:11889031-11889151 9.5e-05 75_[+1]_37 chr2R:15480303-15480423 9.5e-05 16_[+1]_96 chr3R:30802265-30802385 0.00011 41_[+1]_71 chr3L:8347491-8347611 0.00011 71_[+1]_41 chr2R:16170861-16170981 0.00016 [+1]_112 chrX:12723504-12723624 0.00016 79_[+1]_33 chr2R:7070908-7071028 0.00016 23_[+1]_89 chr2L:9509789-9509909 0.00016 49_[+1]_63 chr3L:17003668-17003788 0.00016 86_[+1]_26 chr3L:156687-156807 0.00016 79_[+1]_33 chr2R:13909083-13909203 0.00016 55_[+1]_57 chr3R:17966151-17966271 0.00021 36_[+1]_76 chr3L:4353832-4353952 0.00023 59_[+1]_53 chr3L:20731029-20731149 0.00023 60_[+1]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAAACAA width=8 seqs=41 chr3L:15999685-15999805 ( 58) GCAAACAA 1 chr3L:13236749-13236869 ( 71) GCAAACAA 1 chr2R:18172021-18172141 ( 98) GCAAACAA 1 chr2L:7518967-7519087 ( 4) GCAAACAA 1 chr2L:13082325-13082445 ( 70) GCAAACAA 1 chr3L:3755826-3755946 ( 18) GCAAACAA 1 chr3L:8689832-8689952 ( 59) GCAAACAA 1 chr2L:18556527-18556647 ( 44) GCAAACAA 1 chrX:515832-515952 ( 95) GCAAACAA 1 chrX:3282091-3282211 ( 85) GCAAACAA 1 chr3L:4025868-4025988 ( 54) GCAAACAA 1 chr2R:11792758-11792878 ( 48) GCAAACAA 1 chr3R:22147623-22147743 ( 74) GTAAACAA 1 chr3L:14672789-14672909 ( 74) GTAAACAA 1 chr2R:13541460-13541580 ( 30) GTAAACAA 1 chr2R:18605450-18605570 ( 112) GTAAACAA 1 chr3R:26588209-26588329 ( 42) GTAAACAA 1 chr3R:27986975-27987095 ( 33) GTAAACAA 1 chr2R:23615227-23615347 ( 48) GTAAACAA 1 chr3L:4130867-4130987 ( 66) GTAAACAA 1 chr3L:11049546-11049666 ( 40) GCAAACAG 1 chr3L:2144450-2144570 ( 24) GCAAACAG 1 chr2R:10023864-10023984 ( 107) GCAAACAC 1 chr2L:20807738-20807858 ( 71) GCAAACAC 1 chr2L:18136701-18136821 ( 47) GCAAACAC 1 chr3L:15548946-15549066 ( 41) GCAAACAC 1 chrX:10184793-10184913 ( 111) GCAAACAT 1 chr3L:11889031-11889151 ( 76) GCAAACAT 1 chr2R:15480303-15480423 ( 17) GCAAACAT 1 chr3R:30802265-30802385 ( 42) GCACACAA 1 chr3L:8347491-8347611 ( 72) GCACACAA 1 chr2R:16170861-16170981 ( 1) GTAAACAG 1 chrX:12723504-12723624 ( 80) GCAAATAA 1 chr2R:7070908-7071028 ( 24) GTAAACAG 1 chr2L:9509789-9509909 ( 50) GTAAACAG 1 chr3L:17003668-17003788 ( 87) GCAAATAA 1 chr3L:156687-156807 ( 80) GCAAATAA 1 chr2R:13909083-13909203 ( 56) GCAAATAA 1 chr3R:17966151-17966271 ( 37) GTAAACAT 1 chr3L:4353832-4353952 ( 60) ACAAACAA 1 chr3L:20731029-20731149 ( 61) ACAAACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3926 E= 1.8e-003 -261 -1200 223 -1200 -1200 181 -1200 -2 174 -1200 -1200 -1200 167 -204 -1200 -1200 174 -1200 -1200 -1200 -1200 217 -1200 -161 174 -1200 -1200 -1200 119 -104 -73 -161 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 1.8e-003 0.048780 0.000000 0.951220 0.000000 0.000000 0.707317 0.000000 0.292683 1.000000 0.000000 0.000000 0.000000 0.951220 0.048780 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.902439 0.000000 0.097561 1.000000 0.000000 0.000000 0.000000 0.682927 0.097561 0.121951 0.097561 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 regular expression -------------------------------------------------------------------------------- G[CT]AAACAA -------------------------------------------------------------------------------- Time 8.84 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCMCCSC MEME-2 width = 8 sites = 20 llr = 185 E-value = 1.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCMCCSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::4211: pos.-specific C 9a869a4a probability G 2:3:::5: matrix T ::::::1: bits 2.3 * * 2.1 * * * 1.9 * * * 1.6 ** ** * Relative 1.4 *** ** * Entropy 1.2 ****** * (13.4 bits) 0.9 ****** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCCCCGC consensus GA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCMCCSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:19169162-19169282 40 2.69e-06 TTTTACTCTT CCCCCCGC GGGAGATAAG chr3L:17656112-17656232 12 5.35e-06 CACCACACCC CCCCCCCC CCTTTGTGGC chr2L:2171749-2171869 82 5.35e-06 CCAAAGCACC CCCCCCCC CTCACTTCAC chr2L:8692588-8692708 102 9.36e-06 ATCTCTCTCG CCCACCGC AGCCGTTTCG chr3L:11772727-11772847 21 9.36e-06 ACAACCCACA CCCACCGC CACCCAACGT chr3L:14804776-14804896 55 1.33e-05 TTGCAAACCC CCCACCCC CCCTGGCGAC chr3R:9701457-9701577 75 1.33e-05 AGCGCTTCGC CCCACCCC CACCCCCTCA chr2R:18351899-18352019 84 1.33e-05 GTTTTTTCCC CCCACCCC GCAATATTGT chr3L:14028578-14028698 70 1.60e-05 GTTACCCTGT CCGCCCGC GCTCCAACCC chr3L:20901124-20901244 73 1.60e-05 TCCCACTCAC CCGCCCGC TCTGCCTACA chr2L:8100762-8100882 76 2.82e-05 aagaCATTGT CCGACCGC TCGCTAACTG chr3R:9932601-9932721 54 2.82e-05 GCACGCCCCT GCCCCCCC TGCCCTACCA chr3R:30802265-30802385 108 3.62e-05 AACATCTCGG CCCCACGC GCCAA chrX:5884980-5885100 3 4.42e-05 AT GCCACCGC TGATTGACTG chr3L:11258531-11258651 26 5.21e-05 CTCCCCTTTT CCCCCCTC TCACGCTGTT chr3L:16670367-16670487 8 5.21e-05 ACTGACT CCCCCCAC TTGGGTGTTA chr3L:8347491-8347611 57 6.48e-05 TCAGTCGTTG CCCAACGC CAGCTGTGCA chr3L:19132738-19132858 40 6.75e-05 GAGCTGTAGA GCGCCCCC TGGCGGTGGG chr2R:15515722-15515842 15 8.15e-05 CCACATTTAC CCCCCAGC TGTGAAATTA chr2L:307235-307355 10 8.55e-05 TTTTGTGTG CCGCACCC AGGCGCCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCMCCSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:19169162-19169282 2.7e-06 39_[+2]_73 chr3L:17656112-17656232 5.4e-06 11_[+2]_101 chr2L:2171749-2171869 5.4e-06 81_[+2]_31 chr2L:8692588-8692708 9.4e-06 101_[+2]_11 chr3L:11772727-11772847 9.4e-06 20_[+2]_92 chr3L:14804776-14804896 1.3e-05 54_[+2]_58 chr3R:9701457-9701577 1.3e-05 74_[+2]_38 chr2R:18351899-18352019 1.3e-05 83_[+2]_29 chr3L:14028578-14028698 1.6e-05 69_[+2]_43 chr3L:20901124-20901244 1.6e-05 72_[+2]_40 chr2L:8100762-8100882 2.8e-05 75_[+2]_37 chr3R:9932601-9932721 2.8e-05 53_[+2]_59 chr3R:30802265-30802385 3.6e-05 107_[+2]_5 chrX:5884980-5885100 4.4e-05 2_[+2]_110 chr3L:11258531-11258651 5.2e-05 25_[+2]_87 chr3L:16670367-16670487 5.2e-05 7_[+2]_105 chr3L:8347491-8347611 6.5e-05 56_[+2]_56 chr3L:19132738-19132858 6.8e-05 39_[+2]_73 chr2R:15515722-15515842 8.1e-05 14_[+2]_98 chr2L:307235-307355 8.5e-05 9_[+2]_103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCMCCSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCMCCSC width=8 seqs=20 chr3L:19169162-19169282 ( 40) CCCCCCGC 1 chr3L:17656112-17656232 ( 12) CCCCCCCC 1 chr2L:2171749-2171869 ( 82) CCCCCCCC 1 chr2L:8692588-8692708 ( 102) CCCACCGC 1 chr3L:11772727-11772847 ( 21) CCCACCGC 1 chr3L:14804776-14804896 ( 55) CCCACCCC 1 chr3R:9701457-9701577 ( 75) CCCACCCC 1 chr2R:18351899-18352019 ( 84) CCCACCCC 1 chr3L:14028578-14028698 ( 70) CCGCCCGC 1 chr3L:20901124-20901244 ( 73) CCGCCCGC 1 chr2L:8100762-8100882 ( 76) CCGACCGC 1 chr3R:9932601-9932721 ( 54) GCCCCCCC 1 chr3R:30802265-30802385 ( 108) CCCCACGC 1 chrX:5884980-5885100 ( 3) GCCACCGC 1 chr3L:11258531-11258651 ( 26) CCCCCCTC 1 chr3L:16670367-16670487 ( 8) CCCCCCAC 1 chr3L:8347491-8347611 ( 57) CCCAACGC 1 chr3L:19132738-19132858 ( 40) GCGCCCCC 1 chr2R:15515722-15515842 ( 15) CCCCCAGC 1 chr2L:307235-307355 ( 10) CCGCACCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCMCCSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3003 E= 1.3e+004 -1097 208 -44 -1097 -1097 231 -1097 -1097 -1097 190 30 -1097 42 158 -1097 -1097 -99 208 -1097 -1097 -257 224 -1097 -1097 -257 99 130 -257 -1097 231 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCMCCSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.3e+004 0.000000 0.850000 0.150000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.400000 0.600000 0.000000 0.000000 0.150000 0.850000 0.000000 0.000000 0.050000 0.950000 0.000000 0.000000 0.050000 0.400000 0.500000 0.050000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCMCCSC MEME-2 regular expression -------------------------------------------------------------------------------- CC[CG][CA]CC[GC]C -------------------------------------------------------------------------------- Time 15.11 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCCGCC MEME-3 width = 8 sites = 2 llr = 26 E-value = 2.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:aa:aa probability G ::a::a:: matrix T :::::::: bits 2.3 ******** 2.1 ******** 1.9 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16573825-16573945 54 2.72e-06 AACATTCGAA CCGCCGCC AACAACAATT chr2R:7745200-7745320 111 2.72e-06 GACGTCGACG CCGCCGCC TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16573825-16573945 2.7e-06 53_[+3]_59 chr2R:7745200-7745320 2.7e-06 110_[+3]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCCGCC width=8 seqs=2 chrX:16573825-16573945 ( 54) CCGCCGCC 1 chr2R:7745200-7745320 ( 111) CCGCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.0e+004 -765 231 -765 -765 -765 231 -765 -765 -765 -765 230 -765 -765 231 -765 -765 -765 231 -765 -765 -765 -765 230 -765 -765 231 -765 -765 -765 231 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.0e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-3 regular expression -------------------------------------------------------------------------------- CCGCCGCC -------------------------------------------------------------------------------- Time 21.34 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGGGVR MEME-4 width = 8 sites = 13 llr = 136 E-value = 1.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGGGVR MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::44 pos.-specific C :a:::13: probability G a:aaa936 matrix T :::::::: bits 2.3 ***** 2.1 ***** 1.9 ****** 1.6 ****** Relative 1.4 ****** Entropy 1.2 ****** * (15.1 bits) 0.9 ****** * 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGGGGAG consensus CA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGVR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:13236749-13236869 102 5.68e-06 GGGGGCGGTG GCGGGGGG CCGGGAAATA chrX:6592198-6592318 27 5.68e-06 GGTGGCGGGG GCGGGGGG GTATGGGCAC chrX:3282091-3282211 16 5.68e-06 TGAAATGGTT GCGGGGGG GGGGGTGGTT chr2L:484358-484478 96 9.89e-06 GAGGGCGCGG GCGGGGAG GCCGCTGATA chr3L:14672789-14672909 26 9.89e-06 CTTTGGGTGC GCGGGGAG CTTGTGGTGG chr3R:19223563-19223683 45 9.89e-06 GGCTGGGCGA GCGGGGAG GGCGAAGGGA chr3L:15268886-15269006 79 9.89e-06 ACTGCTGGAA GCGGGGAG TGAGGGGGCA chr3L:17003668-17003788 8 1.41e-05 AGCGGGG GCGGGGCA CTCGCTGGGA chr3L:4130867-4130987 55 1.41e-05 TCTCCGGTTT GCGGGGCA CATGTAAACA chr2L:19098712-19098832 70 1.41e-05 GAAGCTACAA GCGGGGCA CATCGAAATA chr2L:17388192-17388312 2 1.83e-05 G GCGGGGGA TTACTCCATT chr2R:21663176-21663296 106 2.45e-05 GTTTACTCGT GCGGGGAA AGCACCG chr2R:21549079-21549199 38 2.73e-05 GCGAATAAAA GCGGGCCG TCGATACCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGVR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:13236749-13236869 5.7e-06 101_[+4]_11 chrX:6592198-6592318 5.7e-06 26_[+4]_86 chrX:3282091-3282211 5.7e-06 15_[+4]_97 chr2L:484358-484478 9.9e-06 95_[+4]_17 chr3L:14672789-14672909 9.9e-06 25_[+4]_87 chr3R:19223563-19223683 9.9e-06 44_[+4]_68 chr3L:15268886-15269006 9.9e-06 78_[+4]_34 chr3L:17003668-17003788 1.4e-05 7_[+4]_105 chr3L:4130867-4130987 1.4e-05 54_[+4]_58 chr2L:19098712-19098832 1.4e-05 69_[+4]_43 chr2L:17388192-17388312 1.8e-05 1_[+4]_111 chr2R:21663176-21663296 2.4e-05 105_[+4]_7 chr2R:21549079-21549199 2.7e-05 37_[+4]_75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGVR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGGGVR width=8 seqs=13 chr3L:13236749-13236869 ( 102) GCGGGGGG 1 chrX:6592198-6592318 ( 27) GCGGGGGG 1 chrX:3282091-3282211 ( 16) GCGGGGGG 1 chr2L:484358-484478 ( 96) GCGGGGAG 1 chr3L:14672789-14672909 ( 26) GCGGGGAG 1 chr3R:19223563-19223683 ( 45) GCGGGGAG 1 chr3L:15268886-15269006 ( 79) GCGGGGAG 1 chr3L:17003668-17003788 ( 8) GCGGGGCA 1 chr3L:4130867-4130987 ( 55) GCGGGGCA 1 chr2L:19098712-19098832 ( 70) GCGGGGCA 1 chr2L:17388192-17388312 ( 2) GCGGGGGA 1 chr2R:21663176-21663296 ( 106) GCGGGGAA 1 chr2R:21549079-21549199 ( 38) GCGGGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGVR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2496 E= 1.0e+002 -1035 -1035 230 -1035 -1035 231 -1035 -1035 -1035 -1035 230 -1035 -1035 -1035 230 -1035 -1035 -1035 230 -1035 -1035 -138 218 -1035 37 61 60 -1035 37 -1035 160 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGVR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.0e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.076923 0.923077 0.000000 0.384615 0.307692 0.307692 0.000000 0.384615 0.000000 0.615385 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGVR MEME-4 regular expression -------------------------------------------------------------------------------- GCGGGG[ACG][GA] -------------------------------------------------------------------------------- Time 27.55 secs. ******************************************************************************** ******************************************************************************** MOTIF TTRTTTRC MEME-5 width = 8 sites = 102 llr = 698 E-value = 5.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTRTTTRC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 2:4:::3: pos.-specific C 1::::::7 probability G 2:6:::5: matrix T 5a:aaa23 bits 2.3 2.1 1.9 * * * 1.6 * *** Relative 1.4 * *** Entropy 1.2 ***** * (9.9 bits) 0.9 ***** * 0.7 ***** * 0.5 ******* 0.2 ******* 0.0 -------- Multilevel TTGTTTGC consensus G A AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRTTTRC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16005227-16005347 113 1.95e-05 ATTGCTAGGG TTGTTTGC chr3L:3543831-3543951 89 1.95e-05 tttatttgaa ttgtttgC TATTTGAGCA chr3L:20830525-20830645 67 1.95e-05 CCTATAAATG TTGTTTGC TGTTTTATTA chr3L:15268886-15269006 34 1.95e-05 GTGCTCCCGT TTGTTTGC CAACCTGAAC chr3R:28556531-28556651 89 3.27e-05 CGAGAGATGT GTGTTTGC ACAGGCCCCA chr3L:19630873-19630993 59 3.27e-05 GTTGGAATTC GTGTTTGC TTTTCTGTCC chr2R:18605450-18605570 88 3.27e-05 CCAAACAGCT GTGTTTGC CCATGTTTGG chr3R:29891314-29891434 61 3.27e-05 TGTAATTTCT GTGTTTGC CAAAGATACA chr3L:15548946-15549066 99 3.27e-05 AAGTGATCCG GTGTTTGC TTAGTtacag chr3R:21865198-21865318 45 6.14e-05 TTAAATTTAG TTGTTTAC TAACAAATAT chr2L:7518967-7519087 24 6.14e-05 ACATATAATT TTGTTTAC GGTTTCGGGC chr3L:8584220-8584340 64 6.14e-05 ACACACGTGG TTGTTTAC AGAAACAACT chr3L:10362876-10362996 64 6.14e-05 tgtATATCGG TTGTTTAC TTTTACGGTA chr3L:11049546-11049666 93 6.14e-05 ATCAACCGCC TTGTTTAC ACCCATCTAA chrX:13626020-13626140 17 6.14e-05 GAACCTGTTT TTGTTTAC TTGCAAAAAA chrX:6592198-6592318 76 6.14e-05 TCCGCTTAAA TTGTTTAC ACCCCAACCA chr3L:7782360-7782480 48 6.14e-05 GTCAATATTA TTGTTTAC TTCGTTGTTC chr2R:10023864-10023984 13 9.41e-05 TTTTTAATTT CTGTTTGC TCTTTAGTTG chr2R:23611355-23611475 76 9.41e-05 GCCTCACCCG CTGTTTGC TGATAGCTGT chr3R:19924452-19924572 7 9.41e-05 CTTTAT CTGTTTGC TAGCCCTTAT chr3L:20901124-20901244 42 9.41e-05 GCGCTTTTAT CTGTTTGC ACAGCAGCCG chr3R:12657131-12657251 46 9.41e-05 TGTCAACTGG ATGTTTGC CCGTCATTCG chr2R:11792758-11792878 75 9.41e-05 CTTTTGTGCT CTGTTTGC ACTGTGCCGA chr2R:23725967-23726087 74 1.23e-04 TTATGCTAAT TTATTTGC CTGTTTACCA chr3L:17659274-17659394 69 1.23e-04 GAATAATTTG TTATTTGC TCTCCGGATC chrX:16580071-16580191 103 1.23e-04 ATTATTATTA TTATTTGC ATCATAATGG chrX:17582783-17582903 69 1.23e-04 ATGCCAACCA TTATTTGC TTAGTGGTAA chr3L:8689832-8689952 89 1.23e-04 CTGCTTCTAG TTATTTGC GACTGATTTA chr2L:9509789-9509909 105 1.23e-04 GCGGAAGACT TTATTTGC CTTGTATG chr2R:22062467-22062587 109 1.23e-04 CGATATTTAT TTATTTGC TGTT chr3R:17966151-17966271 92 1.23e-04 TATCGAAGTA TTATTTGC ATACATCTAC chr2R:14267833-14267953 30 1.42e-04 GTTTCTCGTT GTGTTTAC GATTCGGATG chr3R:22057234-22057354 90 1.42e-04 ATTTGTTCAA GTGTTTAC CCATTTGCTG chr3R:20257432-20257552 37 2.19e-04 CTTGACGTTG TTGTTTGT TTCTTCGTTT chr2R:7748166-7748286 99 2.19e-04 TGTACATTTT TTGTTTTC GATGTCATAA chr2R:13482189-13482309 8 2.19e-04 TACAACA GTATTTGC AGAGTTATGC chr2R:14481213-14481333 71 2.19e-04 CTATGTTCGA TTGTTTTC GGTCACCAGA chr2R:22312728-22312848 106 2.19e-04 CGCACTCGCC TTGTTTGT TCTCGAT chr2R:22657067-22657187 91 2.19e-04 TCAAGCCCCC GTATTTGC CTAACACTAT chr3L:12045568-12045688 38 2.19e-04 GTATCTATCT GTATTTGC CCGACGCTTA chr3L:3346154-3346274 7 2.19e-04 ACTAGA TTGTTTTC GTGACATTTT chr2R:18774913-18775033 60 2.19e-04 CACAAAACAG TTGTTTGT TTTGCTCGGT chr2R:14494684-14494804 25 2.19e-04 ATTGCACTAA TTGTTTGT TGTTTTCGTG chr3R:5746777-5746897 105 2.19e-04 GTCTTTTTCT TTGTTTTC TAAGCTAG chr2R:21663176-21663296 94 3.06e-04 TGGCCCAATA ATGTTTAC TCGTGCGGGG chr2L:3280731-3280851 82 3.06e-04 AGACGCCTCT CTGTTTAC GTTTGTAATC chr2L:5196832-5196952 17 3.06e-04 TGGCCGGGCT GTGTTTGT GTCATAAATT chr2L:18625577-18625697 6 3.06e-04 AACAT GTGTTTTC CAAAGTGTGA chr3L:4521993-4522113 74 3.06e-04 CTTCGCCAAG CTGTTTAC ACATGTGAGT chr2R:17586085-17586205 11 3.06e-04 CGAATAAAAT GTGTTTTC CTCGAAAATA chr2R:13586406-13586526 37 3.06e-04 GTCGAACGAA ATGTTTAC ACAAGCCGAA chr2L:2168316-2168436 64 3.06e-04 GTATTATGAA ATGTTTAC GATTTGCTTG chr2R:22162313-22162433 91 3.06e-04 TGTGCTGAGC GTGTTTTC AGTTGTTTTT chr2L:17388192-17388312 42 3.06e-04 GAGCCCAGTT CTGTTTAC ATCACCGACT chr2R:18693235-18693355 66 3.49e-04 TGTACAATAA TTATTTAC ACAACTTATT chr3R:7892621-7892741 86 3.97e-04 TTTTAAGCCA ATATTTGC TCAGTGTGTT chr2R:17848901-17849021 62 3.97e-04 TTGAACAAAT CTATTTGC GATATAAGTA chrX:16385966-16386086 37 3.97e-04 GTGTACATAA ATATTTGC CAAGTGCCAC chr3L:12350457-12350577 61 3.97e-04 CGAGGCTGCG ATATTTGC ACAGTTGTGT chrX:3282091-3282211 60 3.97e-04 TTGTTGCTCA ATATTTGC ATATTTGTTT chr2L:10552944-10553064 16 4.68e-04 ATCTTGGCTG GTATTTAC CTTCGAGCTT chr3R:23176831-23176951 83 4.68e-04 CATCTGTTTG GTATTTAC TGTGAGCGGA chr3R:31134145-31134265 13 4.68e-04 CTGAAAACCT TTGTTTAT ATACTTTTAT chr3R:9701457-9701577 48 4.68e-04 TTTTGGCATT TTGTTTAT TGACTTTCCA chr3L:4025868-4025988 42 4.68e-04 TATGCGCAGG TTGTTTAT CAGCGCAAAC chr2R:22644666-22644786 55 4.68e-04 GAACCGAGCG TTGTTTAT CAACAACAAA chr3L:14190142-14190262 22 5.64e-04 ATTGAAATTT ATGTTTTC ATTAAGGTCA chrX:16573825-16573945 73 5.64e-04 ACAACAATTG CTGTTTGT ATTTGTGAAC chr3L:11258531-11258651 39 5.64e-04 CCCTCTCACG CTGTTTTC TCAACGCGTT chrX:11858562-11858682 56 5.64e-04 AGCAAAACAT ATGTTTTC CTCCGATTCT chr2L:369981-370101 93 5.64e-04 TATTGATTCT ATGTTTTC GCTACCTTTT chr2R:15515722-15515842 63 5.64e-04 TGTCCATTGC ATGTTTGT ATATTTGTAT chr2L:16647853-16647973 70 6.49e-04 GTATTAGTAT TTATTTGT ATAATTGGAA chr3L:21321977-21322097 32 6.49e-04 TTAATCATAT TTATTTTC ACAAAGTATC chr3R:26280522-26280642 112 6.49e-04 ATTATCTTAC TTATTTGT T chr3R:30325621-30325741 9 6.49e-04 AACATATA TTATTTTC TTATTTTTTT chr3L:13912906-13913026 54 6.49e-04 tttatttaat ttatttgt tatttatttG chr3L:16670367-16670487 23 6.49e-04 CACTTGGGTG TTATTTGT CTAATTCGAC chr3R:13051377-13051497 4 8.49e-04 CTC TTGTTTTT CTTACTTTTA chr2L:20807738-20807858 58 8.49e-04 GGTTGTCTAA ATATTTAC AGCAGGCAAA chr2L:8738364-8738484 85 8.49e-04 CGGCTGTCGA TTGTTTTT TAGGCGCTAA chr3L:3078943-3079063 47 8.49e-04 TCGTGTGTAC ATATTTAC ACACAATTTA chr2R:23578554-23578674 38 8.49e-04 ATTGATATAT ATATTTAC CATAACATAT chr2R:7070908-7071028 87 8.49e-04 TCCGATGTAT GTATTTGT GGCGTCTGCG chr2L:1636669-1636789 76 8.49e-04 ACAGTGTGGA GTATTTGT TGTTGTAGCC chr3R:25275450-25275570 84 8.49e-04 AAAGAAACTA ATATTTAC CTACAACAAA chrX:7227446-7227566 46 8.49e-04 GATCGCAGCT ATATTTAC ATATGTCCGT chr3L:917382-917502 109 8.49e-04 CCTTTTGTTG CTATTTAC TGCC chr2L:6343260-6343380 106 8.49e-04 ACGGAAGAGT TTGTTTTT GATAATA chr3L:18633238-18633358 60 8.49e-04 CAAATTCAAC TTGTTTTT GATTAGATCA chrX:12723504-12723624 6 9.49e-04 TTTTT GTGTTTTT TTCCCTATTT chr3L:12802693-12802813 81 9.49e-04 GTGTAGGTGC GTGTTTTT AATGGATACA chr3R:20273699-20273819 54 9.49e-04 TTTGATTTAC ATGTTTAT CTTTATCGGC chr2L:9530111-9530231 105 9.49e-04 TTTTCGCATC GTGTTTTT CCTTTCCA chr2R:15480303-15480423 49 9.49e-04 ATACATATGA ATGTTTAT GACTGGATAA chr3R:14875676-14875796 79 1.01e-03 ATACAAATAC TTATTTAT TAAGTATACG chr3R:19627974-19628094 33 1.01e-03 ATTATTCATA TTATTTAT ATATACTAAC chr2R:18172021-18172141 85 1.01e-03 TTTTTGGCGT TTATTTAT AGGCGGCAAA chr3R:26952303-26952423 67 1.01e-03 ATTAGTGACT TTATTTAT AGAGACCCCC chr3L:21036379-21036499 86 1.15e-03 CCAGAATTCT CTATTTGT TTAGTTCTGC chrX:8409260-8409380 48 1.50e-03 AAGACGTATC GTGTGTGC TCAGACTTGT chr3R:23803801-23803921 109 1.50e-03 GTGAGCGAGT GTGTGTGC CTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRTTTRC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16005227-16005347 1.9e-05 112_[+5] chr3L:3543831-3543951 1.9e-05 88_[+5]_24 chr3L:20830525-20830645 1.9e-05 66_[+5]_46 chr3L:15268886-15269006 1.9e-05 33_[+5]_79 chr3R:28556531-28556651 3.3e-05 88_[+5]_24 chr3L:19630873-19630993 3.3e-05 58_[+5]_54 chr2R:18605450-18605570 3.3e-05 87_[+5]_25 chr3R:29891314-29891434 3.3e-05 60_[+5]_52 chr3L:15548946-15549066 3.3e-05 98_[+5]_14 chr3R:21865198-21865318 6.1e-05 44_[+5]_68 chr2L:7518967-7519087 6.1e-05 23_[+5]_89 chr3L:8584220-8584340 6.1e-05 63_[+5]_49 chr3L:10362876-10362996 6.1e-05 63_[+5]_49 chr3L:11049546-11049666 6.1e-05 92_[+5]_20 chrX:13626020-13626140 6.1e-05 16_[+5]_96 chrX:6592198-6592318 6.1e-05 75_[+5]_37 chr3L:7782360-7782480 6.1e-05 47_[+5]_65 chr2R:10023864-10023984 9.4e-05 12_[+5]_100 chr2R:23611355-23611475 9.4e-05 75_[+5]_37 chr3R:19924452-19924572 9.4e-05 6_[+5]_106 chr3L:20901124-20901244 9.4e-05 41_[+5]_71 chr3R:12657131-12657251 9.4e-05 45_[+5]_67 chr2R:11792758-11792878 9.4e-05 74_[+5]_38 chr2R:23725967-23726087 0.00012 73_[+5]_39 chr3L:17659274-17659394 0.00012 68_[+5]_44 chrX:16580071-16580191 0.00012 102_[+5]_10 chrX:17582783-17582903 0.00012 68_[+5]_44 chr3L:8689832-8689952 0.00012 88_[+5]_24 chr2L:9509789-9509909 0.00012 104_[+5]_8 chr2R:22062467-22062587 0.00012 108_[+5]_4 chr3R:17966151-17966271 0.00012 91_[+5]_21 chr2R:14267833-14267953 0.00014 29_[+5]_83 chr3R:22057234-22057354 0.00014 89_[+5]_23 chr3R:20257432-20257552 0.00022 36_[+5]_76 chr2R:7748166-7748286 0.00022 98_[+5]_14 chr2R:13482189-13482309 0.00022 7_[+5]_105 chr2R:14481213-14481333 0.00022 70_[+5]_42 chr2R:22312728-22312848 0.00022 105_[+5]_7 chr2R:22657067-22657187 0.00022 90_[+5]_22 chr3L:12045568-12045688 0.00022 37_[+5]_75 chr3L:3346154-3346274 0.00022 6_[+5]_106 chr2R:18774913-18775033 0.00022 59_[+5]_53 chr2R:14494684-14494804 0.00022 24_[+5]_88 chr3R:5746777-5746897 0.00022 104_[+5]_8 chr2R:21663176-21663296 0.00031 93_[+5]_19 chr2L:3280731-3280851 0.00031 81_[+5]_31 chr2L:5196832-5196952 0.00031 16_[+5]_96 chr2L:18625577-18625697 0.00031 5_[+5]_107 chr3L:4521993-4522113 0.00031 73_[+5]_39 chr2R:17586085-17586205 0.00031 10_[+5]_102 chr2R:13586406-13586526 0.00031 36_[+5]_76 chr2L:2168316-2168436 0.00031 63_[+5]_49 chr2R:22162313-22162433 0.00031 90_[+5]_22 chr2L:17388192-17388312 0.00031 41_[+5]_71 chr2R:18693235-18693355 0.00035 65_[+5]_47 chr3R:7892621-7892741 0.0004 85_[+5]_27 chr2R:17848901-17849021 0.0004 61_[+5]_51 chrX:16385966-16386086 0.0004 36_[+5]_76 chr3L:12350457-12350577 0.0004 60_[+5]_52 chrX:3282091-3282211 0.0004 59_[+5]_53 chr2L:10552944-10553064 0.00047 15_[+5]_97 chr3R:23176831-23176951 0.00047 82_[+5]_30 chr3R:31134145-31134265 0.00047 12_[+5]_100 chr3R:9701457-9701577 0.00047 47_[+5]_65 chr3L:4025868-4025988 0.00047 41_[+5]_71 chr2R:22644666-22644786 0.00047 54_[+5]_58 chr3L:14190142-14190262 0.00056 21_[+5]_91 chrX:16573825-16573945 0.00056 72_[+5]_40 chr3L:11258531-11258651 0.00056 38_[+5]_74 chrX:11858562-11858682 0.00056 55_[+5]_57 chr2L:369981-370101 0.00056 92_[+5]_20 chr2R:15515722-15515842 0.00056 62_[+5]_50 chr2L:16647853-16647973 0.00065 69_[+5]_43 chr3L:21321977-21322097 0.00065 31_[+5]_81 chr3R:26280522-26280642 0.00065 111_[+5]_1 chr3R:30325621-30325741 0.00065 8_[+5]_104 chr3L:13912906-13913026 0.00065 53_[+5]_59 chr3L:16670367-16670487 0.00065 22_[+5]_90 chr3R:13051377-13051497 0.00085 3_[+5]_109 chr2L:20807738-20807858 0.00085 57_[+5]_55 chr2L:8738364-8738484 0.00085 84_[+5]_28 chr3L:3078943-3079063 0.00085 46_[+5]_66 chr2R:23578554-23578674 0.00085 37_[+5]_75 chr2R:7070908-7071028 0.00085 86_[+5]_26 chr2L:1636669-1636789 0.00085 75_[+5]_37 chr3R:25275450-25275570 0.00085 83_[+5]_29 chrX:7227446-7227566 0.00085 45_[+5]_67 chr3L:917382-917502 0.00085 108_[+5]_4 chr2L:6343260-6343380 0.00085 105_[+5]_7 chr3L:18633238-18633358 0.00085 59_[+5]_53 chrX:12723504-12723624 0.00095 5_[+5]_107 chr3L:12802693-12802813 0.00095 80_[+5]_32 chr3R:20273699-20273819 0.00095 53_[+5]_59 chr2L:9530111-9530231 0.00095 104_[+5]_8 chr2R:15480303-15480423 0.00095 48_[+5]_64 chr3R:14875676-14875796 0.001 78_[+5]_34 chr3R:19627974-19628094 0.001 32_[+5]_80 chr2R:18172021-18172141 0.001 84_[+5]_28 chr3R:26952303-26952423 0.001 66_[+5]_46 chr3L:21036379-21036499 0.0012 85_[+5]_27 chrX:8409260-8409380 0.0015 47_[+5]_65 chr3R:23803801-23803921 0.0015 108_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRTTTRC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTRTTTRC width=8 seqs=102 chr3R:16005227-16005347 ( 113) TTGTTTGC 1 chr3L:3543831-3543951 ( 89) TTGTTTGC 1 chr3L:20830525-20830645 ( 67) TTGTTTGC 1 chr3L:15268886-15269006 ( 34) TTGTTTGC 1 chr3R:28556531-28556651 ( 89) GTGTTTGC 1 chr3L:19630873-19630993 ( 59) GTGTTTGC 1 chr2R:18605450-18605570 ( 88) GTGTTTGC 1 chr3R:29891314-29891434 ( 61) GTGTTTGC 1 chr3L:15548946-15549066 ( 99) GTGTTTGC 1 chr3R:21865198-21865318 ( 45) TTGTTTAC 1 chr2L:7518967-7519087 ( 24) TTGTTTAC 1 chr3L:8584220-8584340 ( 64) TTGTTTAC 1 chr3L:10362876-10362996 ( 64) TTGTTTAC 1 chr3L:11049546-11049666 ( 93) TTGTTTAC 1 chrX:13626020-13626140 ( 17) TTGTTTAC 1 chrX:6592198-6592318 ( 76) TTGTTTAC 1 chr3L:7782360-7782480 ( 48) TTGTTTAC 1 chr2R:10023864-10023984 ( 13) CTGTTTGC 1 chr2R:23611355-23611475 ( 76) CTGTTTGC 1 chr3R:19924452-19924572 ( 7) CTGTTTGC 1 chr3L:20901124-20901244 ( 42) CTGTTTGC 1 chr3R:12657131-12657251 ( 46) ATGTTTGC 1 chr2R:11792758-11792878 ( 75) CTGTTTGC 1 chr2R:23725967-23726087 ( 74) TTATTTGC 1 chr3L:17659274-17659394 ( 69) TTATTTGC 1 chrX:16580071-16580191 ( 103) TTATTTGC 1 chrX:17582783-17582903 ( 69) TTATTTGC 1 chr3L:8689832-8689952 ( 89) TTATTTGC 1 chr2L:9509789-9509909 ( 105) TTATTTGC 1 chr2R:22062467-22062587 ( 109) TTATTTGC 1 chr3R:17966151-17966271 ( 92) TTATTTGC 1 chr2R:14267833-14267953 ( 30) GTGTTTAC 1 chr3R:22057234-22057354 ( 90) GTGTTTAC 1 chr3R:20257432-20257552 ( 37) TTGTTTGT 1 chr2R:7748166-7748286 ( 99) TTGTTTTC 1 chr2R:13482189-13482309 ( 8) GTATTTGC 1 chr2R:14481213-14481333 ( 71) TTGTTTTC 1 chr2R:22312728-22312848 ( 106) TTGTTTGT 1 chr2R:22657067-22657187 ( 91) GTATTTGC 1 chr3L:12045568-12045688 ( 38) GTATTTGC 1 chr3L:3346154-3346274 ( 7) TTGTTTTC 1 chr2R:18774913-18775033 ( 60) TTGTTTGT 1 chr2R:14494684-14494804 ( 25) TTGTTTGT 1 chr3R:5746777-5746897 ( 105) TTGTTTTC 1 chr2R:21663176-21663296 ( 94) ATGTTTAC 1 chr2L:3280731-3280851 ( 82) CTGTTTAC 1 chr2L:5196832-5196952 ( 17) GTGTTTGT 1 chr2L:18625577-18625697 ( 6) GTGTTTTC 1 chr3L:4521993-4522113 ( 74) CTGTTTAC 1 chr2R:17586085-17586205 ( 11) GTGTTTTC 1 chr2R:13586406-13586526 ( 37) ATGTTTAC 1 chr2L:2168316-2168436 ( 64) ATGTTTAC 1 chr2R:22162313-22162433 ( 91) GTGTTTTC 1 chr2L:17388192-17388312 ( 42) CTGTTTAC 1 chr2R:18693235-18693355 ( 66) TTATTTAC 1 chr3R:7892621-7892741 ( 86) ATATTTGC 1 chr2R:17848901-17849021 ( 62) CTATTTGC 1 chrX:16385966-16386086 ( 37) ATATTTGC 1 chr3L:12350457-12350577 ( 61) ATATTTGC 1 chrX:3282091-3282211 ( 60) ATATTTGC 1 chr2L:10552944-10553064 ( 16) GTATTTAC 1 chr3R:23176831-23176951 ( 83) GTATTTAC 1 chr3R:31134145-31134265 ( 13) TTGTTTAT 1 chr3R:9701457-9701577 ( 48) TTGTTTAT 1 chr3L:4025868-4025988 ( 42) TTGTTTAT 1 chr2R:22644666-22644786 ( 55) TTGTTTAT 1 chr3L:14190142-14190262 ( 22) ATGTTTTC 1 chrX:16573825-16573945 ( 73) CTGTTTGT 1 chr3L:11258531-11258651 ( 39) CTGTTTTC 1 chrX:11858562-11858682 ( 56) ATGTTTTC 1 chr2L:369981-370101 ( 93) ATGTTTTC 1 chr2R:15515722-15515842 ( 63) ATGTTTGT 1 chr2L:16647853-16647973 ( 70) TTATTTGT 1 chr3L:21321977-21322097 ( 32) TTATTTTC 1 chr3R:26280522-26280642 ( 112) TTATTTGT 1 chr3R:30325621-30325741 ( 9) TTATTTTC 1 chr3L:13912906-13913026 ( 54) TTATTTGT 1 chr3L:16670367-16670487 ( 23) TTATTTGT 1 chr3R:13051377-13051497 ( 4) TTGTTTTT 1 chr2L:20807738-20807858 ( 58) ATATTTAC 1 chr2L:8738364-8738484 ( 85) TTGTTTTT 1 chr3L:3078943-3079063 ( 47) ATATTTAC 1 chr2R:23578554-23578674 ( 38) ATATTTAC 1 chr2R:7070908-7071028 ( 87) GTATTTGT 1 chr2L:1636669-1636789 ( 76) GTATTTGT 1 chr3R:25275450-25275570 ( 84) ATATTTAC 1 chrX:7227446-7227566 ( 46) ATATTTAC 1 chr3L:917382-917502 ( 109) CTATTTAC 1 chr2L:6343260-6343380 ( 106) TTGTTTTT 1 chr3L:18633238-18633358 ( 60) TTGTTTTT 1 chrX:12723504-12723624 ( 6) GTGTTTTT 1 chr3L:12802693-12802813 ( 81) GTGTTTTT 1 chr3R:20273699-20273819 ( 54) ATGTTTAT 1 chr2L:9530111-9530231 ( 105) GTGTTTTT 1 chr2R:15480303-15480423 ( 49) ATGTTTAT 1 chr3R:14875676-14875796 ( 79) TTATTTAT 1 chr3R:19627974-19628094 ( 33) TTATTTAT 1 chr2R:18172021-18172141 ( 85) TTATTTAT 1 chr3R:26952303-26952423 ( 67) TTATTTAT 1 chr3L:21036379-21036499 ( 86) CTATTTGT 1 chrX:8409260-8409380 ( 48) GTGTGTGC 1 chr3R:23803801-23803921 ( 109) GTGTGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRTTTRC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.26005 E= 5.9e-001 -68 -66 15 63 -1332 -1332 -1332 175 32 -1332 163 -1332 -1332 -1332 -1332 175 -1332 -1332 -337 172 -1332 -1332 -1332 175 20 -1332 118 -60 -1332 179 -1332 3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRTTTRC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 102 E= 5.9e-001 0.186275 0.127451 0.225490 0.460784 0.000000 0.000000 0.000000 1.000000 0.372549 0.000000 0.627451 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.019608 0.980392 0.000000 0.000000 0.000000 1.000000 0.343137 0.000000 0.460784 0.196078 0.000000 0.696078 0.000000 0.303922 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRTTTRC MEME-5 regular expression -------------------------------------------------------------------------------- [TG]T[GA]TTT[GA][CT] -------------------------------------------------------------------------------- Time 33.77 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5884980-5885100 1.14e-01 2_[+2(4.42e-05)]_110 chr2R:15515722-15515842 2.16e-02 14_[+2(8.15e-05)]_98 chr3R:22108470-22108590 8.86e-01 120 chr2R:13909083-13909203 3.89e-01 120 chr2R:21091877-21091997 8.87e-01 120 chr2L:19098712-19098832 9.71e-02 69_[+4(1.41e-05)]_43 chr3L:15268886-15269006 8.37e-04 33_[+5(1.95e-05)]_37_[+4(9.89e-06)]_\ 34 chr2R:22644666-22644786 5.31e-01 120 chr2R:17272612-17272732 3.35e-01 120 chr3L:16670367-16670487 2.93e-03 7_[+2(5.21e-05)]_105 chr2L:307235-307355 7.52e-03 9_[+2(8.55e-05)]_103 chrX:13313269-13313389 9.30e-01 120 chr3R:17966151-17966271 2.04e-02 120 chr3R:22057234-22057354 2.10e-01 120 chr3L:17791640-17791760 5.88e-01 120 chr3L:11580078-11580198 8.63e-01 120 chr2R:11792758-11792878 1.54e-03 47_[+1(1.96e-05)]_19_[+5(9.41e-05)]_\ 38 chr3L:4025868-4025988 7.97e-04 53_[+1(1.96e-05)]_59 chr3L:3932848-3932968 3.40e-01 120 chr3L:14432353-14432473 9.58e-01 120 chr3L:18633238-18633358 2.11e-02 120 chr3L:20830525-20830645 9.05e-02 66_[+5(1.95e-05)]_46 chr2L:369981-370101 3.08e-01 120 chr3R:5746777-5746897 1.37e-01 120 chr2R:18351899-18352019 3.24e-02 83_[+2(1.33e-05)]_29 chrX:3282091-3282211 1.97e-04 15_[+4(5.68e-06)]_61_[+1(1.96e-05)]_\ 28 chr3L:4130867-4130987 4.81e-03 54_[+4(1.41e-05)]_3_[+1(4.87e-05)]_\ 47 chr2R:15480303-15480423 6.61e-02 16_[+1(9.47e-05)]_96 chr3R:5107063-5107183 2.69e-01 120 chr3L:19169162-19169282 1.28e-03 39_[+2(2.69e-06)]_73 chr2L:5790902-5791022 9.44e-01 120 chr2L:17388192-17388312 2.05e-03 1_[+4(1.83e-05)]_111 chr3L:15548946-15549066 1.03e-02 40_[+1(7.51e-05)]_50_[+5(3.27e-05)]_\ 14 chr3R:18296248-18296368 1.47e-01 120 chr2R:22062467-22062587 4.61e-02 120 chr2R:8734608-8734728 9.21e-01 120 chrX:7198909-7199029 4.66e-02 120 chrX:515832-515952 6.83e-02 94_[+1(1.96e-05)]_18 chr2L:6465639-6465759 6.00e-01 120 chr2R:12218890-12219010 4.07e-01 120 chr2R:23615227-23615347 1.98e-01 47_[+1(4.87e-05)]_65 chr2R:14494684-14494804 7.74e-02 120 chr3R:9891732-9891852 2.87e-01 120 chr2R:18774913-18775033 5.19e-01 120 chrX:11858562-11858682 4.15e-01 120 chr2R:7749764-7749884 4.39e-01 120 chr3L:12588988-12589108 4.51e-01 120 chr3L:13912906-13913026 2.28e-01 120 chrX:3157428-3157548 9.39e-01 120 chr3R:12657131-12657251 1.42e-01 45_[+5(9.41e-05)]_67 chr3L:2745904-2746024 6.13e-01 120 chr2R:22194948-22195068 7.30e-01 120 chr3R:10688940-10689060 6.70e-01 120 chr3L:329279-329399 9.11e-01 120 chr3L:11889031-11889151 1.34e-01 75_[+1(9.47e-05)]_37 chr2L:9530111-9530231 8.05e-01 120 chr3R:19223563-19223683 6.15e-02 44_[+4(9.89e-06)]_68 chr2L:6343260-6343380 2.68e-01 120 chr3L:156687-156807 3.35e-02 120 chr3R:30325621-30325741 7.02e-01 120 chr3L:20901124-20901244 4.58e-04 41_[+5(9.41e-05)]_23_[+2(1.60e-05)]_\ 40 chr3R:20273699-20273819 2.13e-01 120 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120 chr2L:18625577-18625697 2.28e-01 120 chrX:13642102-13642222 3.03e-02 72_[+3(8.90e-05)]_40 chr2L:12369704-12369824 1.98e-01 120 chr2L:20807738-20807858 1.31e-02 70_[+1(7.51e-05)]_42 chr3L:8741355-8741475 2.39e-01 120 chr3L:17659274-17659394 6.84e-02 120 chr3R:13051377-13051497 2.33e-01 120 chr2R:14481213-14481333 4.11e-01 120 chr2R:13482189-13482309 2.25e-01 120 chr2R:23611355-23611475 6.72e-02 75_[+5(9.41e-05)]_37 chr3R:28556531-28556651 1.00e-01 88_[+5(3.27e-05)]_24 chr3R:28677019-28677139 1.49e-01 120 chrX:17077890-17078010 2.07e-01 120 chr2R:17848901-17849021 3.99e-01 120 chr2R:24657158-24657278 8.74e-01 120 chr3L:4353832-4353952 1.05e-01 120 chr3R:26105941-26106061 9.61e-01 120 chr3L:17907695-17907815 6.86e-01 120 chr2L:484358-484478 8.42e-03 95_[+4(9.89e-06)]_17 chr2L:3803924-3804044 3.64e-01 120 chr3R:19627974-19628094 7.45e-01 120 chr2L:5196832-5196952 1.46e-02 120 chr3R:7892621-7892741 2.49e-01 120 chr2R:14267833-14267953 7.19e-02 120 chr2L:19141009-19141129 9.94e-01 120 chr2R:10023864-10023984 2.73e-04 12_[+5(9.41e-05)]_86_[+1(7.51e-05)]_\ 6 chr3R:21865198-21865318 5.30e-02 44_[+5(6.14e-05)]_68 chr2L:8694439-8694559 1.68e-01 120 chr2R:23725967-23726087 1.27e-01 120 chr2L:3280731-3280851 1.24e-01 120 chr2R:16170861-16170981 1.37e-01 120 chr2R:21663176-21663296 3.22e-03 105_[+4(2.45e-05)]_7 chr3R:18918221-18918341 7.66e-01 120 chr2L:1207582-1207702 9.99e-01 120 chr3L:15977697-15977817 9.93e-01 120 chr2R:7748166-7748286 1.93e-01 120 chr2R:11435176-11435296 9.25e-01 120 chrX:16655886-16656006 8.86e-01 120 chr3R:20257432-20257552 3.53e-01 120 chr3R:16005227-16005347 1.89e-01 112_[+5(1.95e-05)] chr2L:7940783-7940903 4.56e-01 120 chr3R:14875676-14875796 4.27e-01 120 chr2L:10552944-10553064 4.32e-01 120 chr3L:14190142-14190262 6.34e-01 120 chr3L:6216101-6216221 4.60e-01 120 chr3L:15999685-15999805 9.06e-02 57_[+1(1.96e-05)]_55 chr2L:16647853-16647973 6.84e-01 120 chrX:2011746-2011866 8.93e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************