******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/cato.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:23512808-23512928 1.0000 120 chr2L:11394273-11394393 1.0000 120 chrX:4457838-4457958 1.0000 120 chr2L:1218169-1218289 1.0000 120 chr3L:17651848-17651968 1.0000 120 chr2R:15381235-15381355 1.0000 120 chr3L:1549333-1549453 1.0000 120 chr3L:21463096-21463216 1.0000 120 chr3R:27274613-27274733 1.0000 120 chr3L:20771220-20771340 1.0000 120 chr2L:6819557-6819677 1.0000 120 chrX:10601747-10601867 1.0000 120 chrX:8294266-8294386 1.0000 120 chr3L:745715-745835 1.0000 120 chr2L:3856538-3856658 1.0000 120 chr2R:10439059-10439179 1.0000 120 chr3R:27988737-27988857 1.0000 120 chr2L:1427884-1428004 1.0000 120 chr3L:5365322-5365442 1.0000 120 chr3R:29004952-29005072 1.0000 120 chrX:9352856-9352976 1.0000 120 chrX:20644158-20644278 1.0000 120 chr2R:14485485-14485605 1.0000 120 chr3L:10350858-10350978 1.0000 120 chr2L:3841100-3841220 1.0000 120 chr3R:23387087-23387207 1.0000 120 chr3L:11552087-11552207 1.0000 120 chr3L:19294496-19294616 1.0000 120 chr3R:12451522-12451642 1.0000 120 chrX:17860888-17861008 1.0000 120 chr2L:1491927-1492047 1.0000 120 chr3R:28857418-28857538 1.0000 120 chr3R:28587068-28587188 1.0000 120 chr2R:16772631-16772751 1.0000 120 chrX:14247454-14247574 1.0000 120 chr3R:10265576-10265696 1.0000 120 chr3R:30815000-30815120 1.0000 120 chr3R:10648956-10649076 1.0000 120 chr3L:11408960-11409080 1.0000 120 chr2L:1723213-1723333 1.0000 120 chr2L:14024809-14024929 1.0000 120 chr3R:18366368-18366488 1.0000 120 chr2R:7241709-7241829 1.0000 120 chr2L:3555760-3555880 1.0000 120 chr3L:20630688-20630808 1.0000 120 chr2L:18900012-18900132 1.0000 120 chr2L:20948718-20948838 1.0000 120 chr3L:11306272-11306392 1.0000 120 chr3R:28844894-28845014 1.0000 120 chr2L:12351037-12351157 1.0000 120 chr2R:11044544-11044664 1.0000 120 chr2R:21851656-21851776 1.0000 120 chr2R:7927000-7927120 1.0000 120 chr3R:23395858-23395978 1.0000 120 chr3L:11379860-11379980 1.0000 120 chr3R:10681744-10681864 1.0000 120 chrX:4581854-4581974 1.0000 120 chr2L:10858213-10858333 1.0000 120 chr2R:12437060-12437180 1.0000 120 chr3R:30413958-30414078 1.0000 120 chrX:19009016-19009136 1.0000 120 chr2L:3779348-3779468 1.0000 120 chr3L:14545517-14545637 1.0000 120 chr3L:15672946-15673066 1.0000 120 chr2R:9684143-9684263 1.0000 120 chr2R:13015219-13015339 1.0000 120 chr2R:15351308-15351428 1.0000 120 chr2L:7376232-7376352 1.0000 120 chr2R:13429241-13429361 1.0000 120 chr3L:17404867-17404987 1.0000 120 chr3R:11674090-11674210 1.0000 120 chr3R:6760828-6760948 1.0000 120 chr3R:11806863-11806983 1.0000 120 chr3R:32051824-32051944 1.0000 120 chr3L:110055-110175 1.0000 120 chr3R:5660235-5660355 1.0000 120 chr3R:22625863-22625983 1.0000 120 chr2R:18277251-18277371 1.0000 120 chr3R:23293517-23293637 1.0000 120 chr3R:24318503-24318623 1.0000 120 chrX:8295112-8295232 1.0000 120 chrX:13128021-13128141 1.0000 120 chr2L:1987860-1987980 1.0000 120 chr2L:17583159-17583279 1.0000 120 chr3L:8751387-8751507 1.0000 120 chr3R:15347919-15348039 1.0000 120 chr2L:1916585-1916705 1.0000 120 chr2L:15248696-15248816 1.0000 120 chr3R:30812623-30812743 1.0000 120 chr3L:2651926-2652046 1.0000 120 chr2R:15818582-15818702 1.0000 120 chr3R:9237908-9238028 1.0000 120 chr3L:18782182-18782302 1.0000 120 chr3R:6406031-6406151 1.0000 120 chr3L:5819452-5819572 1.0000 120 chr2R:11970337-11970457 1.0000 120 chr3L:18840769-18840889 1.0000 120 chr3L:3305617-3305737 1.0000 120 chrX:7617107-7617227 1.0000 120 chr3L:14776174-14776294 1.0000 120 chr3L:18786927-18787047 1.0000 120 chrX:12595743-12595863 1.0000 120 chr3L:11429841-11429961 1.0000 120 chr2R:22540015-22540135 1.0000 120 chr3R:4732466-4732586 1.0000 120 chr3R:12997713-12997833 1.0000 120 chr3L:13929294-13929414 1.0000 120 chr2L:827604-827724 1.0000 120 chr2R:11275733-11275853 1.0000 120 chr3L:6981991-6982111 1.0000 120 chrX:18921101-18921221 1.0000 120 chrX:13253276-13253396 1.0000 120 chr2R:12605670-12605790 1.0000 120 chr3R:26052399-26052519 1.0000 120 chr3L:699464-699584 1.0000 120 chr3R:25880422-25880542 1.0000 120 chrX:8125436-8125556 1.0000 120 chr3L:12336446-12336566 1.0000 120 chr3L:3543178-3543298 1.0000 120 chr3R:24206912-24207032 1.0000 120 chr3L:642535-642655 1.0000 120 chr2L:3647668-3647788 1.0000 120 chr2L:3598636-3598756 1.0000 120 chr2L:21658541-21658661 1.0000 120 chr3L:18226038-18226158 1.0000 120 chr2R:13926339-13926459 1.0000 120 chr2L:4459647-4459767 1.0000 120 chr3R:11735479-11735599 1.0000 120 chr3R:19877611-19877731 1.0000 120 chr2R:21057315-21057435 1.0000 120 chr2L:15254360-15254480 1.0000 120 chr3L:9367228-9367348 1.0000 120 chr3R:31687973-31688093 1.0000 120 chr3R:10079722-10079842 1.0000 120 chrX:13644254-13644374 1.0000 120 chr3L:10847826-10847946 1.0000 120 chrX:12454503-12454623 1.0000 120 chr2L:5245741-5245861 1.0000 120 chrX:3367387-3367507 1.0000 120 chr3L:554750-554870 1.0000 120 chr3L:6157667-6157787 1.0000 120 chr3R:16209134-16209254 1.0000 120 chrX:8126305-8126425 1.0000 120 chr3L:7360345-7360465 1.0000 120 chrX:4530063-4530183 1.0000 120 chr2L:5297454-5297574 1.0000 120 chr3R:21218987-21219107 1.0000 120 chr3R:23118006-23118126 1.0000 120 chr3R:20835043-20835163 1.0000 120 chr2R:10103865-10103985 1.0000 120 chrX:20519224-20519344 1.0000 120 chr3R:15676388-15676508 1.0000 120 chr2L:11037773-11037893 1.0000 120 chr3L:5987743-5987863 1.0000 120 chr2L:16302960-16303080 1.0000 120 chr2R:14645081-14645201 1.0000 120 chr3R:5613208-5613328 1.0000 120 chr3L:21516944-21517064 1.0000 120 chr3R:8960512-8960632 1.0000 120 chr2R:15835486-15835606 1.0000 120 chr3R:26130701-26130821 1.0000 120 chr3L:3855295-3855415 1.0000 120 chr3L:7347979-7348099 1.0000 120 chr2R:13991323-13991443 1.0000 120 chrX:11548885-11549005 1.0000 120 chr2R:16178566-16178686 1.0000 120 chrX:16158630-16158750 1.0000 120 chrX:6037376-6037496 1.0000 120 chr3R:17584175-17584295 1.0000 120 chr3L:18784688-18784808 1.0000 120 chrX:9356464-9356584 1.0000 120 chr2L:13073894-13074014 1.0000 120 chr2R:7916700-7916820 1.0000 120 chr3R:17680950-17681070 1.0000 120 chr3R:24010937-24011057 1.0000 120 chr2L:6700733-6700853 1.0000 120 chr3L:14612987-14613107 1.0000 120 chr2L:19867053-19867173 1.0000 120 chr2R:21134551-21134671 1.0000 120 chr3R:27209119-27209239 1.0000 120 chr2L:20681988-20682108 1.0000 120 chr2L:20950804-20950924 1.0000 120 chr3L:17912685-17912805 1.0000 120 chr3R:5742348-5742468 1.0000 120 chr3L:1350763-1350883 1.0000 120 chr2L:5238300-5238420 1.0000 120 chr3L:5881656-5881776 1.0000 120 chr2L:14094807-14094927 1.0000 120 chrX:9652170-9652290 1.0000 120 chr3R:14609390-14609510 1.0000 120 chrX:8777275-8777395 1.0000 120 chr3R:25880621-25880741 1.0000 120 chr2L:7641764-7641884 1.0000 120 chrX:2732278-2732398 1.0000 120 chr3L:10843324-10843444 1.0000 120 chr2L:10356542-10356662 1.0000 120 chr3R:25004868-25004988 1.0000 120 chr2L:20811365-20811485 1.0000 120 chr2L:10698147-10698267 1.0000 120 chr3L:14978007-14978127 1.0000 120 chr2L:11209108-11209228 1.0000 120 chr2L:7258197-7258317 1.0000 120 chr3L:3935756-3935876 1.0000 120 chr3R:13030665-13030785 1.0000 120 chr3R:31064767-31064887 1.0000 120 chr3L:12062981-12063101 1.0000 120 chr3L:20185503-20185623 1.0000 120 chr2L:16709766-16709886 1.0000 120 chr2R:22686558-22686678 1.0000 120 chr3L:10852025-10852145 1.0000 120 chr3L:11822470-11822590 1.0000 120 chr3L:8549273-8549393 1.0000 120 chrX:12909634-12909754 1.0000 120 chr3L:11398619-11398739 1.0000 120 chr3L:19166426-19166546 1.0000 120 chr2R:13587124-13587244 1.0000 120 chr3R:23709663-23709783 1.0000 120 chr3R:5470779-5470899 1.0000 120 chr2L:5256074-5256194 1.0000 120 chr2L:10442219-10442339 1.0000 120 chrX:13274510-13274630 1.0000 120 chr2L:10522537-10522657 1.0000 120 chrX:19663396-19663516 1.0000 120 chr2L:3472369-3472489 1.0000 120 chr2L:14370035-14370155 1.0000 120 chr3R:14347408-14347528 1.0000 120 chr3L:6853627-6853747 1.0000 120 chr2L:11192880-11193000 1.0000 120 chr3L:15787573-15787693 1.0000 120 chr3R:26953669-26953789 1.0000 120 chr3R:23356292-23356412 1.0000 120 chr3L:7912020-7912140 1.0000 120 chrX:13258772-13258892 1.0000 120 chr2R:9680433-9680553 1.0000 120 chr3R:20285807-20285927 1.0000 120 chr3L:12277446-12277566 1.0000 120 chr3R:30532138-30532258 1.0000 120 chr3R:23819317-23819437 1.0000 120 chrX:4616996-4617116 1.0000 120 chr3R:25884398-25884518 1.0000 120 chr3L:10344208-10344328 1.0000 120 chr2L:606295-606415 1.0000 120 chr3L:3852987-3853107 1.0000 120 chr3R:29458876-29458996 1.0000 120 chr2R:20086144-20086264 1.0000 120 chr2L:10987542-10987662 1.0000 120 chr2L:11453070-11453190 1.0000 120 chr3R:5061128-5061248 1.0000 120 chr3R:6504598-6504718 1.0000 120 chr3L:264441-264561 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_cato/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/cato.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.344 C 0.157 G 0.157 T 0.342 Background letter frequencies (from file dataset with add-one prior applied): A 0.344 C 0.157 G 0.157 T 0.342 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CGCASYGC MEME-1 width = 8 sites = 21 llr = 202 E-value = 9.6e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCASYGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::19:1:: pos.-specific C 8:9:531a probability G :a::5:9: matrix T 2::1:5:: bits 2.7 * 2.4 * * 2.1 * ** 1.9 ** ** Relative 1.6 *** * ** Entropy 1.3 *** * ** (13.9 bits) 1.1 *** * ** 0.8 ***** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCAGTGC consensus T CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCASYGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:6504598-6504718 53 8.09e-07 ATTGAGTAGC CGCAGCGC TGACCCGCTT chr2L:5245741-5245861 110 3.38e-06 AATAATTTCT CGCAGTGC ATC chr2L:3598636-3598756 98 3.38e-06 ACTTTTTTCG CGCAGTGC ACAATCCCGC chr3L:10350858-10350978 113 3.38e-06 GCACATTTTT CGCAGTGC chr3R:18366368-18366488 77 6.91e-06 CATCTCCACT CGCAGAGC CTGTGCAAGC chrX:6037376-6037496 78 8.69e-06 CTGGTCACAC CGCACAGC GGGCCAAGCT chr2R:16772631-16772751 24 8.69e-06 GTTTGGCTCG CGCACAGC TGATTTGCTA chr2R:15818582-15818702 108 1.04e-05 TTTACACAAA TGCAGCGC CACCT chr2L:11192880-11193000 93 1.76e-05 ACAAATTTGT TGCAGTGC ATGAAAGTTT chr2R:13926339-13926459 105 1.76e-05 TATTTTTTCG TGCAGTGC TTGCGAAA chr2L:5256074-5256194 4 2.30e-05 TGC TGCACTGC GAAAAATGTC chr3L:11398619-11398739 16 2.30e-05 CTCCCGTTTC CGCTCCGC CCAACTCAAC chr2L:13073894-13074014 12 2.30e-05 CTGTGGCCGA TGCACTGC AAGAAAACAC chr3R:26130701-26130821 18 2.30e-05 TTGGCTCACA CGCAGCCC GACCATAAAG chrX:13253276-13253396 102 2.47e-05 TGCCAGAAGT CGCACCCC CATCTCTTCC chr2R:14645081-14645201 96 2.72e-05 AAGCTTTCTT CGCCCTGC GTAAGACAGC chr2R:7927000-7927120 90 3.25e-05 CACGTAGTGA CGAAGCGC ACCAGGATAC chr3L:5365322-5365442 104 3.25e-05 TGTTGTTTTG CGCTCTGC TTCTCGTGT chr2R:7916700-7916820 60 3.60e-05 ATCTAAGATA CGAACCGC GTTGCCGATA chr3R:29004952-29005072 73 4.46e-05 TTTCATTTCT CGAACTGC CTATCTTTAT chr2L:7258197-7258317 110 4.71e-05 GATTTCAGCG CCCAGTGC GCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCASYGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:6504598-6504718 8.1e-07 52_[+1]_60 chr2L:5245741-5245861 3.4e-06 109_[+1]_3 chr2L:3598636-3598756 3.4e-06 97_[+1]_15 chr3L:10350858-10350978 3.4e-06 112_[+1] chr3R:18366368-18366488 6.9e-06 76_[+1]_36 chrX:6037376-6037496 8.7e-06 77_[+1]_35 chr2R:16772631-16772751 8.7e-06 23_[+1]_89 chr2R:15818582-15818702 1e-05 107_[+1]_5 chr2L:11192880-11193000 1.8e-05 92_[+1]_20 chr2R:13926339-13926459 1.8e-05 104_[+1]_8 chr2L:5256074-5256194 2.3e-05 3_[+1]_109 chr3L:11398619-11398739 2.3e-05 15_[+1]_97 chr2L:13073894-13074014 2.3e-05 11_[+1]_101 chr3R:26130701-26130821 2.3e-05 17_[+1]_95 chrX:13253276-13253396 2.5e-05 101_[+1]_11 chr2R:14645081-14645201 2.7e-05 95_[+1]_17 chr2R:7927000-7927120 3.2e-05 89_[+1]_23 chr3L:5365322-5365442 3.2e-05 103_[+1]_9 chr2R:7916700-7916820 3.6e-05 59_[+1]_53 chr3R:29004952-29005072 4.5e-05 72_[+1]_40 chr2L:7258197-7258317 4.7e-05 109_[+1]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCASYGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCASYGC width=8 seqs=21 chr3R:6504598-6504718 ( 53) CGCAGCGC 1 chr2L:5245741-5245861 ( 110) CGCAGTGC 1 chr2L:3598636-3598756 ( 98) CGCAGTGC 1 chr3L:10350858-10350978 ( 113) CGCAGTGC 1 chr3R:18366368-18366488 ( 77) CGCAGAGC 1 chrX:6037376-6037496 ( 78) CGCACAGC 1 chr2R:16772631-16772751 ( 24) CGCACAGC 1 chr2R:15818582-15818702 ( 108) TGCAGCGC 1 chr2L:11192880-11193000 ( 93) TGCAGTGC 1 chr2R:13926339-13926459 ( 105) TGCAGTGC 1 chr2L:5256074-5256194 ( 4) TGCACTGC 1 chr3L:11398619-11398739 ( 16) CGCTCCGC 1 chr2L:13073894-13074014 ( 12) TGCACTGC 1 chr3R:26130701-26130821 ( 18) CGCAGCCC 1 chrX:13253276-13253396 ( 102) CGCACCCC 1 chr2R:14645081-14645201 ( 96) CGCCCTGC 1 chr2R:7927000-7927120 ( 90) CGAAGCGC 1 chr3L:5365322-5365442 ( 104) CGCTCTGC 1 chr2R:7916700-7916820 ( 60) CGAACCGC 1 chr3R:29004952-29005072 ( 73) CGAACTGC 1 chr2L:7258197-7258317 ( 110) CCCAGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCASYGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 9.6e-001 -1104 228 -1104 -52 -1104 -172 260 -1104 -127 245 -1104 -1104 132 -172 -1104 -184 -1104 160 173 -1104 -127 109 -1104 61 -1104 -72 252 -1104 -1104 267 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCASYGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 9.6e-001 0.000000 0.761905 0.000000 0.238095 0.000000 0.047619 0.952381 0.000000 0.142857 0.857143 0.000000 0.000000 0.857143 0.047619 0.000000 0.095238 0.000000 0.476190 0.523810 0.000000 0.142857 0.333333 0.000000 0.523810 0.000000 0.095238 0.904762 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCASYGC MEME-1 regular expression -------------------------------------------------------------------------------- [CT]GCA[GC][TC]GC -------------------------------------------------------------------------------- Time 7.53 secs. ******************************************************************************** ******************************************************************************** MOTIF TKGGCGSC MEME-2 width = 8 sites = 22 llr = 205 E-value = 1.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKGGCGSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3::::2:: pos.-specific C 1:::a148 probability G :4aa:562 matrix T 66:::2:: bits 2.7 *** 2.4 *** 2.1 *** 1.9 *** * Relative 1.6 *** ** Entropy 1.3 *** ** (13.5 bits) 1.1 **** ** 0.8 **** ** 0.5 ******* 0.3 ******** 0.0 -------- Multilevel TTGGCGGC consensus AG TCG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGGCGSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16772631-16772751 54 8.04e-07 GATGGCACCA TGGGCGGC AGTGTTGTAA chr2R:13991323-13991443 57 2.56e-06 ACCGATTTTG TTGGCGGC TTTCTTTTAT chr3L:18784688-18784808 72 3.73e-06 atttttcata cgggcggc cacccctttt chr3R:11735479-11735599 40 3.73e-06 TTATATGGGA CGGGCGGC TGCACAATGA chrX:9652170-9652290 109 6.29e-06 GCGACTGTGT TTGGCGCC CTCA chr3R:18366368-18366488 44 6.29e-06 TATTGAAAAA TTGGCGCC CCACATTTTG chrX:16158630-16158750 52 1.00e-05 AACTATAAGA ATGGCGGC TATTCATTTT chr3R:5613208-5613328 95 1.26e-05 AAACAGTTAT TGGGCTGC CATCTGGGGC chr2L:3472369-3472489 96 2.03e-05 GCCTGTGCAG ATGGCGCC ACCATGACGC chr3L:110055-110175 23 2.03e-05 TTTTCCGTCT TGGGCAGC ACTAAAAAAA chr2L:3555760-3555880 5 2.03e-05 GAGA TGGGCGCG TGAGGGGTCA chrX:13253276-13253396 87 2.53e-05 CTCATGGATC TTGGCTGC CAGAAGTCGC chr2R:15818582-15818702 20 2.88e-05 ATTCACATAC TGGGCTCC AAAATTGTGT chr3L:20630688-20630808 57 2.88e-05 AATACAATTC TTGGCCGC AATTTCCTAT chr3R:23819317-23819437 65 3.60e-05 GGATTCAAGC TTGGCGCG TAATATTTTG chrX:13128021-13128141 113 6.54e-05 TGCTATTTTT ATGGCTGC chrX:8126305-8126425 23 7.26e-05 TACTTTAGTT CTGGCAGC TTAAATCATT chr3L:12336446-12336566 17 8.16e-05 TAATTAACAG ATGGCAGC TCAGCTACTG chr3R:4732466-4732586 109 8.16e-05 TTTTCGTGCA ATGGCGCG AAAT chr2L:15248696-15248816 16 8.16e-05 AAAAATGTTT TGGGCAGG GTATATAATA chrX:4457838-4457958 85 8.16e-05 CTTCAAGTGT AGGGCCCC ATGCAAGTCA chr3R:23118006-23118126 29 8.90e-05 TAGATTTGAC TTGGCTGG CGGTAGCTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGGCGSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16772631-16772751 8e-07 53_[+2]_59 chr2R:13991323-13991443 2.6e-06 56_[+2]_56 chr3L:18784688-18784808 3.7e-06 71_[+2]_41 chr3R:11735479-11735599 3.7e-06 39_[+2]_73 chrX:9652170-9652290 6.3e-06 108_[+2]_4 chr3R:18366368-18366488 6.3e-06 43_[+2]_69 chrX:16158630-16158750 1e-05 51_[+2]_61 chr3R:5613208-5613328 1.3e-05 94_[+2]_18 chr2L:3472369-3472489 2e-05 95_[+2]_17 chr3L:110055-110175 2e-05 22_[+2]_90 chr2L:3555760-3555880 2e-05 4_[+2]_108 chrX:13253276-13253396 2.5e-05 86_[+2]_26 chr2R:15818582-15818702 2.9e-05 19_[+2]_93 chr3L:20630688-20630808 2.9e-05 56_[+2]_56 chr3R:23819317-23819437 3.6e-05 64_[+2]_48 chrX:13128021-13128141 6.5e-05 112_[+2] chrX:8126305-8126425 7.3e-05 22_[+2]_90 chr3L:12336446-12336566 8.2e-05 16_[+2]_96 chr3R:4732466-4732586 8.2e-05 108_[+2]_4 chr2L:15248696-15248816 8.2e-05 15_[+2]_97 chrX:4457838-4457958 8.2e-05 84_[+2]_28 chr3R:23118006-23118126 8.9e-05 28_[+2]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGGCGSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKGGCGSC width=8 seqs=22 chr2R:16772631-16772751 ( 54) TGGGCGGC 1 chr2R:13991323-13991443 ( 57) TTGGCGGC 1 chr3L:18784688-18784808 ( 72) CGGGCGGC 1 chr3R:11735479-11735599 ( 40) CGGGCGGC 1 chrX:9652170-9652290 ( 109) TTGGCGCC 1 chr3R:18366368-18366488 ( 44) TTGGCGCC 1 chrX:16158630-16158750 ( 52) ATGGCGGC 1 chr3R:5613208-5613328 ( 95) TGGGCTGC 1 chr2L:3472369-3472489 ( 96) ATGGCGCC 1 chr3L:110055-110175 ( 23) TGGGCAGC 1 chr2L:3555760-3555880 ( 5) TGGGCGCG 1 chrX:13253276-13253396 ( 87) TTGGCTGC 1 chr2R:15818582-15818702 ( 20) TGGGCTCC 1 chr3L:20630688-20630808 ( 57) TTGGCCGC 1 chr3R:23819317-23819437 ( 65) TTGGCGCG 1 chrX:13128021-13128141 ( 113) ATGGCTGC 1 chrX:8126305-8126425 ( 23) CTGGCAGC 1 chr3L:12336446-12336566 ( 17) ATGGCAGC 1 chr3R:4732466-4732586 ( 109) ATGGCGCG 1 chr2L:15248696-15248816 ( 16) TGGGCAGG 1 chrX:4457838-4457958 ( 85) AGGGCCCC 1 chr3R:23118006-23118126 ( 29) TTGGCTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGGCGSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2007 E= 1.7e+002 -33 -20 -1110 79 -1110 -1110 138 79 -1110 -1110 267 -1110 -1110 -1110 267 -1110 -1110 267 -1110 -1110 -92 -79 167 -59 -1110 121 202 -1110 -1110 230 53 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGGCGSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.7e+002 0.272727 0.136364 0.000000 0.590909 0.000000 0.000000 0.409091 0.590909 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.181818 0.090909 0.500000 0.227273 0.000000 0.363636 0.636364 0.000000 0.000000 0.772727 0.227273 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGGCGSC MEME-2 regular expression -------------------------------------------------------------------------------- [TA][TG]GGC[GT][GC][CG] -------------------------------------------------------------------------------- Time 13.84 secs. ******************************************************************************** ******************************************************************************** MOTIF CWGTGKSC MEME-3 width = 8 sites = 22 llr = 201 E-value = 6.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWGTGKSC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :5:1:::: pos.-specific C a:::::47 probability G ::a19563 matrix T :5:815:: bits 2.7 * 2.4 * * 2.1 * * * 1.9 * * * * Relative 1.6 * * * ** Entropy 1.3 * * * ** (13.2 bits) 1.1 * * **** 0.8 * ****** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTGTGGGC consensus A TCG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGTGKSC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7927000-7927120 62 1.75e-06 AATTAAGTCA CTGTGGGC TGTGGACGTA chr3L:1549333-1549453 32 3.51e-06 GCTGACCGCA CAGTGGGC CTATTTACAA chr2L:13073894-13074014 2 5.27e-06 T CTGTGGCC GATGCACTGC chr2L:5297454-5297574 86 7.03e-06 AAACTTTTTC CAGTGGCC CGCGAGTCCC chr2L:1427884-1428004 8 7.03e-06 AATTTAT CAGTGGCC CATCGCACAG chr3R:6504598-6504718 17 1.16e-05 GAATACGATG CTGTGTGC GGGGAAAAGC chr3R:10681744-10681864 53 1.16e-05 TTTTGTGTGG CTGTGTGC CAGTTAATTG chr3L:554750-554870 91 1.80e-05 GTTTTTCTTT CAGTGTGC ATTTCATGCA chr3R:31687973-31688093 83 1.80e-05 TTTTATTTTC CAGTGTGC ATTGTGCGCT chr2R:14645081-14645201 64 3.08e-05 CACAGGCGCA CTGTGGCG TTTTAGCTTT chr2L:7376232-7376352 36 3.26e-05 ttgtatAAAG CAGTGGCG GAGACTGAAA chr3R:20835043-20835163 66 4.07e-05 GTTGTTGCTG CTGTGTGG AAGTTGTTTA chr3R:21218987-21219107 22 4.07e-05 GCTCAAACAA CAGGGTGC ACCTTGTGTA chr3L:11552087-11552207 94 4.07e-05 CCATTTCTTT CTGTGTGG CAGAGAAAAC chr3L:5365322-5365442 65 4.71e-05 CTTTTCCTCT CAGTGTGG GGTCATATGG chr3L:19166426-19166546 7 4.89e-05 caaaat caGAGGGC ACTTGGGAAA chr3R:5613208-5613328 106 5.70e-05 GGGCTGCCAT CTGGGGCG TCTATGC chr3R:11735479-11735599 73 5.70e-05 GCAGGCGCTC CAGGGTCC GCCTTAAATT chrX:13644254-13644374 72 7.81e-05 AATTGTAGTT CTGAGTGC CTAAATCATT chrX:13253276-13253396 47 7.81e-05 TAAGTGTTCA CTGTTGGC AAAAATGAAC chr3R:28587068-28587188 76 7.81e-05 AATGTTTGCC GTGTGGGC GTTGGGTTGG chr2L:4459647-4459767 8 1.04e-04 TTGGCCA CTGTTGCC AATTGGTGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGTGKSC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7927000-7927120 1.8e-06 61_[+3]_51 chr3L:1549333-1549453 3.5e-06 31_[+3]_81 chr2L:13073894-13074014 5.3e-06 1_[+3]_111 chr2L:5297454-5297574 7e-06 85_[+3]_27 chr2L:1427884-1428004 7e-06 7_[+3]_105 chr3R:6504598-6504718 1.2e-05 16_[+3]_96 chr3R:10681744-10681864 1.2e-05 52_[+3]_60 chr3L:554750-554870 1.8e-05 90_[+3]_22 chr3R:31687973-31688093 1.8e-05 82_[+3]_30 chr2R:14645081-14645201 3.1e-05 63_[+3]_49 chr2L:7376232-7376352 3.3e-05 35_[+3]_77 chr3R:20835043-20835163 4.1e-05 65_[+3]_47 chr3R:21218987-21219107 4.1e-05 21_[+3]_91 chr3L:11552087-11552207 4.1e-05 93_[+3]_19 chr3L:5365322-5365442 4.7e-05 64_[+3]_48 chr3L:19166426-19166546 4.9e-05 6_[+3]_106 chr3R:5613208-5613328 5.7e-05 105_[+3]_7 chr3R:11735479-11735599 5.7e-05 72_[+3]_40 chrX:13644254-13644374 7.8e-05 71_[+3]_41 chrX:13253276-13253396 7.8e-05 46_[+3]_66 chr3R:28587068-28587188 7.8e-05 75_[+3]_37 chr2L:4459647-4459767 0.0001 7_[+3]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGTGKSC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWGTGKSC width=8 seqs=22 chr2R:7927000-7927120 ( 62) CTGTGGGC 1 chr3L:1549333-1549453 ( 32) CAGTGGGC 1 chr2L:13073894-13074014 ( 2) CTGTGGCC 1 chr2L:5297454-5297574 ( 86) CAGTGGCC 1 chr2L:1427884-1428004 ( 8) CAGTGGCC 1 chr3R:6504598-6504718 ( 17) CTGTGTGC 1 chr3R:10681744-10681864 ( 53) CTGTGTGC 1 chr3L:554750-554870 ( 91) CAGTGTGC 1 chr3R:31687973-31688093 ( 83) CAGTGTGC 1 chr2R:14645081-14645201 ( 64) CTGTGGCG 1 chr2L:7376232-7376352 ( 36) CAGTGGCG 1 chr3R:20835043-20835163 ( 66) CTGTGTGG 1 chr3R:21218987-21219107 ( 22) CAGGGTGC 1 chr3L:11552087-11552207 ( 94) CTGTGTGG 1 chr3L:5365322-5365442 ( 65) CAGTGTGG 1 chr3L:19166426-19166546 ( 7) CAGAGGGC 1 chr3R:5613208-5613328 ( 106) CTGGGGCG 1 chr3R:11735479-11735599 ( 73) CAGGGTCC 1 chrX:13644254-13644374 ( 72) CTGAGTGC 1 chrX:13253276-13253396 ( 47) CTGTTGGC 1 chr3R:28587068-28587188 ( 76) GTGTGGGC 1 chr2L:4459647-4459767 ( 8) CTGTTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGTGKSC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6807 E= 6.7e+003 -1110 261 -179 -1110 40 -1110 -1110 67 -1110 -1110 267 -1110 -192 -1110 -21 118 -1110 -1110 253 -191 -1110 -1110 179 41 -1110 121 202 -1110 -1110 221 79 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGTGKSC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 6.7e+003 0.000000 0.954545 0.045455 0.000000 0.454545 0.000000 0.000000 0.545455 0.000000 0.000000 1.000000 0.000000 0.090909 0.000000 0.136364 0.772727 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.545455 0.454545 0.000000 0.363636 0.636364 0.000000 0.000000 0.727273 0.272727 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGTGKSC MEME-3 regular expression -------------------------------------------------------------------------------- C[TA]GTG[GT][GC][CG] -------------------------------------------------------------------------------- Time 20.09 secs. ******************************************************************************** ******************************************************************************** MOTIF GRTGGCRC MEME-4 width = 8 sites = 8 llr = 89 E-value = 2.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRTGGCRC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :6::::4: pos.-specific C :::::a:a probability G a4:a8:6: matrix T ::a:3::: bits 2.7 * * * * 2.4 * * * * 2.1 * * * * 1.9 * * * * Relative 1.6 * **** * Entropy 1.3 * ****** (16.1 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GATGGCGC consensus G T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCRC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:1491927-1492047 109 8.04e-07 CTTCCGCCTA GGTGGCGC TTCT chr3L:19294496-19294616 9 8.04e-07 TCCGCATA GGTGGCGC ATGCCTCTCT chr2L:3472369-3472489 47 2.57e-06 TTCAGATACA GATGGCGC TCACGCCAAT chr3R:23709663-23709783 62 8.19e-06 TGCCACAATA GATGGCAC GCACATTTGT chr3L:7347979-7348099 44 8.19e-06 TTGAAATAGG GATGGCAC GTGCAGCTGG chr2R:16772631-16772751 44 8.19e-06 ATTTGCTAGA GATGGCAC CATGGGCGGC chr2L:7641764-7641884 4 9.94e-06 CCA GGTGTCGC CACTCAAAAC chr3R:25880422-25880542 8 1.38e-05 ATACAGT GATGTCGC TTTTAAAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCRC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1491927-1492047 8e-07 108_[+4]_4 chr3L:19294496-19294616 8e-07 8_[+4]_104 chr2L:3472369-3472489 2.6e-06 46_[+4]_66 chr3R:23709663-23709783 8.2e-06 61_[+4]_51 chr3L:7347979-7348099 8.2e-06 43_[+4]_69 chr2R:16772631-16772751 8.2e-06 43_[+4]_69 chr2L:7641764-7641884 9.9e-06 3_[+4]_109 chr3R:25880422-25880542 1.4e-05 7_[+4]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCRC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRTGGCRC width=8 seqs=8 chr2L:1491927-1492047 ( 109) GGTGGCGC 1 chr3L:19294496-19294616 ( 9) GGTGGCGC 1 chr2L:3472369-3472489 ( 47) GATGGCGC 1 chr3R:23709663-23709783 ( 62) GATGGCAC 1 chr3L:7347979-7348099 ( 44) GATGGCAC 1 chr2R:16772631-16772751 ( 44) GATGGCAC 1 chr2L:7641764-7641884 ( 4) GGTGTCGC 1 chr3R:25880422-25880542 ( 8) GATGTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCRC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.1077 E= 2.2e+004 -965 -965 267 -965 86 -965 125 -965 -965 -965 -965 155 -965 -965 267 -965 -965 -965 225 -45 -965 267 -965 -965 12 -965 199 -965 -965 267 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCRC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.2e+004 0.000000 0.000000 1.000000 0.000000 0.625000 0.000000 0.375000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 1.000000 0.000000 0.000000 0.375000 0.000000 0.625000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCRC MEME-4 regular expression -------------------------------------------------------------------------------- G[AG]TG[GT]C[GA]C -------------------------------------------------------------------------------- Time 26.30 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGCCGAC MEME-5 width = 8 sites = 4 llr = 49 E-value = 4.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGCCGAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::8: pos.-specific C :::aa3:a probability G a:a::83: matrix T :a:::::: bits 2.7 * *** * 2.4 * *** * 2.1 * *** * 1.9 * **** * Relative 1.6 ****** * Entropy 1.3 ****** * (17.8 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGCCGAC consensus CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCCGAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13429241-13429361 46 1.76e-06 TAAGTTTTCA GTGCCGAC TAAGTTATAA chrX:17860888-17861008 107 1.76e-06 TGTGTGGATG GTGCCGAC GTGAGT chr2L:1723213-1723333 89 2.57e-06 AAGAACTAAT GTGCCGGC CATTGTGTGT chr3R:15676388-15676508 35 4.33e-06 ATTTTTTCGA GTGCCCAC TGTTTGTTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCCGAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13429241-13429361 1.8e-06 45_[+5]_67 chrX:17860888-17861008 1.8e-06 106_[+5]_6 chr2L:1723213-1723333 2.6e-06 88_[+5]_24 chr3R:15676388-15676508 4.3e-06 34_[+5]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCCGAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGCCGAC width=8 seqs=4 chr2R:13429241-13429361 ( 46) GTGCCGAC 1 chrX:17860888-17861008 ( 107) GTGCCGAC 1 chr2L:1723213-1723333 ( 89) GTGCCGGC 1 chr3R:15676388-15676508 ( 35) GTGCCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCCGAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 4.9e+004 -865 -865 267 -865 -865 -865 -865 155 -865 -865 267 -865 -865 267 -865 -865 -865 267 -865 -865 -865 67 225 -865 112 -865 67 -865 -865 267 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCCGAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.9e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCCGAC MEME-5 regular expression -------------------------------------------------------------------------------- GTGCC[GC][AG]C -------------------------------------------------------------------------------- Time 32.50 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:23512808-23512928 1.00e+00 120 chr2L:11394273-11394393 8.10e-01 120 chrX:4457838-4457958 6.83e-03 84_[+2(8.16e-05)]_28 chr2L:1218169-1218289 3.33e-02 120 chr3L:17651848-17651968 7.81e-01 120 chr2R:15381235-15381355 7.49e-01 120 chr3L:1549333-1549453 1.13e-03 31_[+3(3.51e-06)]_81 chr3L:21463096-21463216 2.38e-01 120 chr3R:27274613-27274733 9.64e-02 120 chr3L:20771220-20771340 9.98e-01 120 chr2L:6819557-6819677 6.95e-01 120 chrX:10601747-10601867 1.36e-01 120 chrX:8294266-8294386 8.96e-02 120 chr3L:745715-745835 3.17e-01 120 chr2L:3856538-3856658 1.12e-01 120 chr2R:10439059-10439179 9.98e-01 120 chr3R:27988737-27988857 3.18e-01 120 chr2L:1427884-1428004 3.19e-04 7_[+3(7.03e-06)]_19_[+4(6.71e-05)]_\ 78 chr3L:5365322-5365442 1.96e-03 64_[+3(4.71e-05)]_31_[+1(3.25e-05)]_\ 9 chr3R:29004952-29005072 1.24e-01 72_[+1(4.46e-05)]_40 chrX:9352856-9352976 6.46e-01 120 chrX:20644158-20644278 3.96e-01 120 chr2R:14485485-14485605 4.13e-01 120 chr3L:10350858-10350978 1.08e-02 112_[+1(3.38e-06)] chr2L:3841100-3841220 9.48e-01 120 chr3R:23387087-23387207 8.98e-01 120 chr3L:11552087-11552207 6.69e-02 93_[+3(4.07e-05)]_19 chr3L:19294496-19294616 1.51e-03 8_[+4(8.04e-07)]_104 chr3R:12451522-12451642 5.62e-01 120 chrX:17860888-17861008 1.67e-05 106_[+5(1.76e-06)]_6 chr2L:1491927-1492047 3.95e-04 108_[+4(8.04e-07)]_4 chr3R:28857418-28857538 3.79e-01 120 chr3R:28587068-28587188 1.96e-02 75_[+3(7.81e-05)]_37 chr2R:16772631-16772751 6.09e-08 23_[+1(8.69e-06)]_12_[+4(8.19e-06)]_\ 2_[+2(8.04e-07)]_59 chrX:14247454-14247574 6.35e-02 120 chr3R:10265576-10265696 7.89e-01 120 chr3R:30815000-30815120 1.27e-01 120 chr3R:10648956-10649076 9.29e-01 120 chr3L:11408960-11409080 7.73e-01 120 chr2L:1723213-1723333 6.99e-04 88_[+5(2.57e-06)]_24 chr2L:14024809-14024929 2.40e-01 120 chr3R:18366368-18366488 2.35e-05 43_[+2(6.29e-06)]_25_[+1(6.91e-06)]_\ 36 chr2R:7241709-7241829 9.87e-01 120 chr2L:3555760-3555880 1.41e-02 4_[+2(2.03e-05)]_108 chr3L:20630688-20630808 2.58e-02 56_[+2(2.88e-05)]_56 chr2L:18900012-18900132 2.16e-01 120 chr2L:20948718-20948838 3.67e-01 120 chr3L:11306272-11306392 3.69e-01 120 chr3R:28844894-28845014 1.83e-02 120 chr2L:12351037-12351157 5.39e-01 120 chr2R:11044544-11044664 9.07e-02 120 chr2R:21851656-21851776 8.93e-01 120 chr2R:7927000-7927120 2.10e-05 61_[+3(1.75e-06)]_20_[+1(3.25e-05)]_\ 23 chr3R:23395858-23395978 7.87e-01 120 chr3L:11379860-11379980 8.10e-01 120 chr3R:10681744-10681864 3.17e-04 52_[+3(1.16e-05)]_60 chrX:4581854-4581974 9.46e-01 120 chr2L:10858213-10858333 7.69e-01 120 chr2R:12437060-12437180 9.87e-02 120 chr3R:30413958-30414078 5.71e-01 120 chrX:19009016-19009136 3.80e-01 120 chr2L:3779348-3779468 4.06e-01 120 chr3L:14545517-14545637 2.82e-03 120 chr3L:15672946-15673066 1.61e-01 120 chr2R:9684143-9684263 9.65e-01 120 chr2R:13015219-13015339 2.97e-01 120 chr2R:15351308-15351428 6.29e-01 120 chr2L:7376232-7376352 1.41e-02 35_[+3(3.26e-05)]_12_[+3(8.94e-05)]_\ 57 chr2R:13429241-13429361 1.39e-03 45_[+5(1.76e-06)]_67 chr3L:17404867-17404987 8.64e-01 120 chr3R:11674090-11674210 2.83e-01 120 chr3R:6760828-6760948 9.98e-01 120 chr3R:11806863-11806983 4.15e-01 120 chr3R:32051824-32051944 2.32e-02 120 chr3L:110055-110175 1.90e-02 22_[+2(2.03e-05)]_90 chr3R:5660235-5660355 5.03e-01 120 chr3R:22625863-22625983 9.17e-02 120 chr2R:18277251-18277371 3.75e-01 120 chr3R:23293517-23293637 1.00e+00 120 chr3R:24318503-24318623 2.78e-01 120 chrX:8295112-8295232 7.17e-01 120 chrX:13128021-13128141 8.57e-02 112_[+2(6.54e-05)] chr2L:1987860-1987980 2.52e-01 120 chr2L:17583159-17583279 9.98e-01 120 chr3L:8751387-8751507 2.84e-01 120 chr3R:15347919-15348039 9.67e-01 120 chr2L:1916585-1916705 5.05e-02 120 chr2L:15248696-15248816 9.01e-02 15_[+2(8.16e-05)]_97 chr3R:30812623-30812743 9.97e-01 120 chr3L:2651926-2652046 8.48e-01 120 chr2R:15818582-15818702 1.17e-03 19_[+2(2.88e-05)]_80_[+1(1.04e-05)]_\ 5 chr3R:9237908-9238028 7.32e-01 120 chr3L:18782182-18782302 9.89e-01 120 chr3R:6406031-6406151 9.99e-01 120 chr3L:5819452-5819572 5.74e-01 120 chr2R:11970337-11970457 5.24e-01 120 chr3L:18840769-18840889 9.76e-01 120 chr3L:3305617-3305737 2.35e-01 120 chrX:7617107-7617227 1.96e-02 18_[+1(7.61e-05)]_94 chr3L:14776174-14776294 3.99e-01 120 chr3L:18786927-18787047 9.90e-01 120 chrX:12595743-12595863 8.35e-01 120 chr3L:11429841-11429961 6.60e-01 120 chr2R:22540015-22540135 4.45e-02 120 chr3R:4732466-4732586 1.15e-02 108_[+2(8.16e-05)]_4 chr3R:12997713-12997833 7.88e-01 120 chr3L:13929294-13929414 2.88e-01 120 chr2L:827604-827724 3.39e-01 120 chr2R:11275733-11275853 9.19e-01 120 chr3L:6981991-6982111 9.97e-01 120 chrX:18921101-18921221 2.94e-01 120 chrX:13253276-13253396 3.85e-06 46_[+3(7.81e-05)]_32_[+2(2.53e-05)]_\ 7_[+1(2.47e-05)]_11 chr2R:12605670-12605790 3.29e-01 120 chr3R:26052399-26052519 8.44e-01 120 chr3L:699464-699584 9.11e-01 120 chr3R:25880422-25880542 6.68e-02 7_[+4(1.38e-05)]_105 chrX:8125436-8125556 8.89e-01 120 chr3L:12336446-12336566 2.64e-03 16_[+2(8.16e-05)]_96 chr3L:3543178-3543298 1.50e-01 120 chr3R:24206912-24207032 3.43e-01 120 chr3L:642535-642655 8.38e-02 120 chr2L:3647668-3647788 8.27e-01 120 chr2L:3598636-3598756 1.34e-02 97_[+1(3.38e-06)]_7_[+1(2.72e-05)] chr2L:21658541-21658661 3.04e-01 120 chr3L:18226038-18226158 1.00e+00 120 chr2R:13926339-13926459 4.11e-02 104_[+1(1.76e-05)]_8 chr2L:4459647-4459767 3.88e-02 120 chr3R:11735479-11735599 2.47e-05 39_[+2(3.73e-06)]_25_[+3(5.70e-05)]_\ 40 chr3R:19877611-19877731 6.26e-01 120 chr2R:21057315-21057435 1.77e-01 120 chr2L:15254360-15254480 9.96e-01 120 chr3L:9367228-9367348 7.21e-01 120 chr3R:31687973-31688093 8.94e-03 82_[+3(1.80e-05)]_30 chr3R:10079722-10079842 1.22e-01 120 chrX:13644254-13644374 4.02e-02 71_[+3(7.81e-05)]_41 chr3L:10847826-10847946 9.17e-01 120 chrX:12454503-12454623 9.34e-01 120 chr2L:5245741-5245861 3.79e-03 109_[+1(3.38e-06)]_3 chrX:3367387-3367507 4.70e-01 120 chr3L:554750-554870 6.09e-03 90_[+3(1.80e-05)]_22 chr3L:6157667-6157787 9.03e-01 120 chr3R:16209134-16209254 9.93e-01 120 chrX:8126305-8126425 7.25e-02 22_[+2(7.26e-05)]_90 chr3L:7360345-7360465 5.61e-01 120 chrX:4530063-4530183 1.39e-01 120 chr2L:5297454-5297574 7.46e-04 85_[+3(7.03e-06)]_27 chr3R:21218987-21219107 4.37e-02 21_[+3(4.07e-05)]_91 chr3R:23118006-23118126 4.68e-02 28_[+2(8.90e-05)]_84 chr3R:20835043-20835163 1.56e-02 65_[+3(4.07e-05)]_47 chr2R:10103865-10103985 6.66e-01 120 chrX:20519224-20519344 3.15e-01 120 chr3R:15676388-15676508 1.03e-02 34_[+5(4.33e-06)]_78 chr2L:11037773-11037893 5.55e-01 120 chr3L:5987743-5987863 6.38e-01 120 chr2L:16302960-16303080 9.15e-01 120 chr2R:14645081-14645201 6.92e-04 63_[+3(3.08e-05)]_24_[+1(2.72e-05)]_\ 17 chr3R:5613208-5613328 2.03e-03 94_[+2(1.26e-05)]_3_[+3(5.70e-05)]_\ 7 chr3L:21516944-21517064 1.12e-01 44_[+5(7.37e-05)]_68 chr3R:8960512-8960632 7.72e-01 120 chr2R:15835486-15835606 7.51e-02 120 chr3R:26130701-26130821 1.88e-03 17_[+1(2.30e-05)]_95 chr3L:3855295-3855415 2.98e-01 120 chr3L:7347979-7348099 1.52e-03 43_[+4(8.19e-06)]_69 chr2R:13991323-13991443 1.99e-03 56_[+2(2.56e-06)]_56 chrX:11548885-11549005 2.46e-01 120 chr2R:16178566-16178686 4.76e-02 120 chrX:16158630-16158750 1.30e-02 51_[+2(1.00e-05)]_61 chrX:6037376-6037496 1.12e-03 77_[+1(8.69e-06)]_35 chr3R:17584175-17584295 1.00e+00 120 chr3L:18784688-18784808 1.46e-03 71_[+2(3.73e-06)]_41 chrX:9356464-9356584 4.14e-01 120 chr2L:13073894-13074014 1.51e-04 1_[+3(5.27e-06)]_2_[+1(2.30e-05)]_\ 101 chr2R:7916700-7916820 5.87e-02 59_[+1(3.60e-05)]_53 chr3R:17680950-17681070 9.92e-01 120 chr3R:24010937-24011057 5.52e-01 120 chr2L:6700733-6700853 2.72e-01 120 chr3L:14612987-14613107 4.23e-01 120 chr2L:19867053-19867173 5.52e-01 120 chr2R:21134551-21134671 3.46e-01 120 chr3R:27209119-27209239 1.05e-02 120 chr2L:20681988-20682108 9.79e-01 120 chr2L:20950804-20950924 1.80e-01 120 chr3L:17912685-17912805 2.23e-01 120 chr3R:5742348-5742468 1.67e-01 120 chr3L:1350763-1350883 1.23e-01 120 chr2L:5238300-5238420 9.97e-01 120 chr3L:5881656-5881776 9.79e-01 120 chr2L:14094807-14094927 1.22e-01 120 chrX:9652170-9652290 1.12e-04 108_[+2(6.29e-06)]_4 chr3R:14609390-14609510 8.32e-01 120 chrX:8777275-8777395 1.37e-01 120 chr3R:25880621-25880741 9.98e-01 120 chr2L:7641764-7641884 7.47e-04 3_[+4(9.94e-06)]_109 chrX:2732278-2732398 4.04e-01 120 chr3L:10843324-10843444 9.01e-02 120 chr2L:10356542-10356662 6.28e-02 120 chr3R:25004868-25004988 1.73e-01 120 chr2L:20811365-20811485 8.91e-01 120 chr2L:10698147-10698267 9.75e-01 120 chr3L:14978007-14978127 8.95e-01 120 chr2L:11209108-11209228 9.98e-01 120 chr2L:7258197-7258317 3.47e-03 109_[+1(4.71e-05)]_3 chr3L:3935756-3935876 6.44e-01 120 chr3R:13030665-13030785 8.22e-02 120 chr3R:31064767-31064887 5.85e-02 120 chr3L:12062981-12063101 9.21e-01 120 chr3L:20185503-20185623 7.31e-01 120 chr2L:16709766-16709886 9.36e-01 120 chr2R:22686558-22686678 9.81e-01 120 chr3L:10852025-10852145 8.34e-01 120 chr3L:11822470-11822590 4.13e-02 89_[+5(7.37e-05)]_23 chr3L:8549273-8549393 4.91e-01 120 chrX:12909634-12909754 8.25e-02 120 chr3L:11398619-11398739 2.45e-02 15_[+1(2.30e-05)]_97 chr3L:19166426-19166546 7.08e-03 6_[+3(4.89e-05)]_106 chr2R:13587124-13587244 7.61e-01 120 chr3R:23709663-23709783 3.49e-03 61_[+4(8.19e-06)]_51 chr3R:5470779-5470899 1.94e-01 120 chr2L:5256074-5256194 1.33e-02 3_[+1(2.30e-05)]_109 chr2L:10442219-10442339 9.27e-01 120 chrX:13274510-13274630 5.79e-01 120 chr2L:10522537-10522657 8.65e-01 120 chrX:19663396-19663516 8.17e-01 120 chr2L:3472369-3472489 8.26e-07 46_[+4(2.57e-06)]_40_[+4(2.57e-06)]_\ 18 chr2L:14370035-14370155 1.50e-01 120 chr3R:14347408-14347528 9.81e-01 120 chr3L:6853627-6853747 8.21e-01 120 chr2L:11192880-11193000 7.12e-02 92_[+1(1.76e-05)]_20 chr3L:15787573-15787693 9.58e-01 120 chr3R:26953669-26953789 1.54e-01 120 chr3R:23356292-23356412 9.78e-01 120 chr3L:7912020-7912140 8.97e-01 120 chrX:13258772-13258892 5.87e-01 120 chr2R:9680433-9680553 4.71e-01 120 chr3R:20285807-20285927 8.79e-02 120 chr3L:12277446-12277566 7.21e-01 120 chr3R:30532138-30532258 7.40e-01 120 chr3R:23819317-23819437 1.21e-02 64_[+2(3.60e-05)]_48 chrX:4616996-4617116 5.89e-01 120 chr3R:25884398-25884518 1.00e+00 120 chr3L:10344208-10344328 9.99e-01 120 chr2L:606295-606415 4.01e-01 120 chr3L:3852987-3853107 7.13e-01 120 chr3R:29458876-29458996 5.91e-01 120 chr2R:20086144-20086264 8.30e-01 120 chr2L:10987542-10987662 9.88e-01 120 chr2L:11453070-11453190 5.97e-01 120 chr3R:5061128-5061248 6.57e-01 120 chr3R:6504598-6504718 1.61e-06 16_[+3(1.16e-05)]_28_[+1(8.09e-07)]_\ 40_[+3(5.07e-05)]_12 chr3L:264441-264561 1.06e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************