******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/cad.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:20785472-20785592 1.0000 120 chr3R:16902134-16902254 1.0000 120 chr3L:4017419-4017539 1.0000 120 chr3L:11931314-11931434 1.0000 120 chr2L:7305652-7305772 1.0000 120 chr2R:11043840-11043960 1.0000 120 chr2L:19703177-19703297 1.0000 120 chr3L:8664519-8664639 1.0000 120 chr2R:15755100-15755220 1.0000 120 chr2L:12632865-12632985 1.0000 120 chr3R:7033814-7033934 1.0000 120 chr2L:1066756-1066876 1.0000 120 chr2L:20772988-20773108 1.0000 120 chr2L:21778206-21778326 1.0000 120 chr2R:23181375-23181495 1.0000 120 chr2R:17773117-17773237 1.0000 120 chr2R:11794870-11794990 1.0000 120 chrX:9690687-9690807 1.0000 120 chr2R:11455494-11455614 1.0000 120 chr2R:14815238-14815358 1.0000 120 chr3R:6965162-6965282 1.0000 120 chrX:2430856-2430976 1.0000 120 chr3R:22967746-22967866 1.0000 120 chr3R:19338995-19339115 1.0000 120 chr3R:31306003-31306123 1.0000 120 chr2R:13240372-13240492 1.0000 120 chr2L:7304456-7304576 1.0000 120 chr2R:22155577-22155697 1.0000 120 chr3R:18079117-18079237 1.0000 120 chr3L:401561-401681 1.0000 120 chr2R:8604325-8604445 1.0000 120 chr2L:19043943-19044063 1.0000 120 chr3L:17765542-17765662 1.0000 120 chr2L:10551867-10551987 1.0000 120 chr3R:25615526-25615646 1.0000 120 chr3R:21516337-21516457 1.0000 120 chr3R:18074172-18074292 1.0000 120 chrX:1230506-1230626 1.0000 120 chr3L:8666836-8666956 1.0000 120 chr2L:8811886-8812006 1.0000 120 chrX:3393901-3394021 1.0000 120 chr2L:14446756-14446876 1.0000 120 chr2R:19570273-19570393 1.0000 120 chr3R:26792769-26792889 1.0000 120 chr3L:18362554-18362674 1.0000 120 chr2R:6199904-6200024 1.0000 120 chr2R:18123986-18124106 1.0000 120 chr3L:11238211-11238331 1.0000 120 chr2L:9421461-9421581 1.0000 120 chr3R:17082252-17082372 1.0000 120 chr3R:4640339-4640459 1.0000 120 chr3L:15081184-15081304 1.0000 120 chr3L:2193329-2193449 1.0000 120 chr2L:21741564-21741684 1.0000 120 chr3R:16793137-16793257 1.0000 120 chrX:11322393-11322513 1.0000 120 chrX:2438408-2438528 1.0000 120 chr3R:16914062-16914182 1.0000 120 chr3R:4529120-4529240 1.0000 120 chr2L:4684398-4684518 1.0000 120 chr2L:11078496-11078616 1.0000 120 chr3L:6827834-6827954 1.0000 120 chr3R:31411736-31411856 1.0000 120 chr3R:20662371-20662491 1.0000 120 chr2L:14383966-14384086 1.0000 120 chr2L:16405958-16406078 1.0000 120 chr3R:30473666-30473786 1.0000 120 chr2L:5599767-5599887 1.0000 120 chrX:18891853-18891973 1.0000 120 chr3L:21481922-21482042 1.0000 120 chr3R:6995273-6995393 1.0000 120 chr3R:21793150-21793270 1.0000 120 chrX:973406-973526 1.0000 120 chr3L:266791-266911 1.0000 120 chr2R:6576162-6576282 1.0000 120 chr3L:788869-788989 1.0000 120 chr3L:19162691-19162811 1.0000 120 chrX:12205752-12205872 1.0000 120 chr2R:13541000-13541120 1.0000 120 chr2L:7138114-7138234 1.0000 120 chr2L:1402357-1402477 1.0000 120 chr3L:15715288-15715408 1.0000 120 chr3R:9745591-9745711 1.0000 120 chr3L:18588516-18588636 1.0000 120 chr2L:11722694-11722814 1.0000 120 chr3L:2385482-2385602 1.0000 120 chrX:10808601-10808721 1.0000 120 chr3L:2197143-2197263 1.0000 120 chr2L:4280743-4280863 1.0000 120 chr3L:4264046-4264166 1.0000 120 chr3R:30667176-30667296 1.0000 120 chr2L:10101425-10101545 1.0000 120 chr3L:747419-747539 1.0000 120 chr3R:12112145-12112265 1.0000 120 chr3R:18559025-18559145 1.0000 120 chr3R:12645430-12645550 1.0000 120 chrX:3422167-3422287 1.0000 120 chr2L:8167555-8167675 1.0000 120 chr3R:16752396-16752516 1.0000 120 chr3L:20564822-20564942 1.0000 120 chr2R:19840142-19840262 1.0000 120 chr2L:3079749-3079869 1.0000 120 chr3L:18119299-18119419 1.0000 120 chr3L:14783943-14784063 1.0000 120 chr3L:17145864-17145984 1.0000 120 chr3R:14504661-14504781 1.0000 120 chr2L:21341816-21341936 1.0000 120 chrX:20652165-20652285 1.0000 120 chrX:7047100-7047220 1.0000 120 chr3R:10859576-10859696 1.0000 120 chr2L:8294534-8294654 1.0000 120 chr2R:25116798-25116918 1.0000 120 chr2L:20767596-20767716 1.0000 120 chr2L:15336684-15336804 1.0000 120 chr3R:16730218-16730338 1.0000 120 chr2R:17144787-17144907 1.0000 120 chr2R:5937940-5938060 1.0000 120 chr2L:12087614-12087734 1.0000 120 chrX:17179686-17179806 1.0000 120 chr2L:3005646-3005766 1.0000 120 chr2R:11709491-11709611 1.0000 120 chr3R:13990870-13990990 1.0000 120 chr3L:22375742-22375862 1.0000 120 chr3R:23463780-23463900 1.0000 120 chr3L:18318592-18318712 1.0000 120 chr3R:16951513-16951633 1.0000 120 chr3L:20629829-20629949 1.0000 120 chr3R:27226169-27226289 1.0000 120 chr2L:16498766-16498886 1.0000 120 chrX:960906-961026 1.0000 120 chrX:23023864-23023984 1.0000 120 chr3R:30797946-30798066 1.0000 120 chr3L:4401387-4401507 1.0000 120 chr3R:14483921-14484041 1.0000 120 chr2R:11042688-11042808 1.0000 120 chr2L:3968463-3968583 1.0000 120 chr3R:16950034-16950154 1.0000 120 chr2R:9973867-9973987 1.0000 120 chr3L:15223580-15223700 1.0000 120 chrX:14677922-14678042 1.0000 120 chrX:20663048-20663168 1.0000 120 chr2L:1421094-1421214 1.0000 120 chr3R:14570735-14570855 1.0000 120 chr2L:20775796-20775916 1.0000 120 chr3R:30383332-30383452 1.0000 120 chr2L:14551318-14551438 1.0000 120 chr3L:8662915-8663035 1.0000 120 chr2L:12092014-12092134 1.0000 120 chr2R:9975412-9975532 1.0000 120 chr4:631791-631911 1.0000 120 chr2L:16582869-16582989 1.0000 120 chr3R:30650113-30650233 1.0000 120 chr3R:30041059-30041179 1.0000 120 chr2R:20962297-20962417 1.0000 120 chr3R:6744869-6744989 1.0000 120 chr3R:31527999-31528119 1.0000 120 chr3R:11993831-11993951 1.0000 120 chr3R:30902959-30903079 1.0000 120 chr2L:15314755-15314875 1.0000 120 chr2R:8122101-8122221 1.0000 120 chr2L:12085126-12085246 1.0000 120 chrX:20677653-20677773 1.0000 120 chrX:8211830-8211950 1.0000 120 chr3L:3560682-3560802 1.0000 120 chr3R:6907680-6907800 1.0000 120 chr2R:10844909-10845029 1.0000 120 chr3R:8307274-8307394 1.0000 120 chr2R:17751354-17751474 1.0000 120 chr2R:10859917-10860037 1.0000 120 chr3R:5266381-5266501 1.0000 120 chrX:19786241-19786361 1.0000 120 chr2L:21910794-21910914 1.0000 120 chr2R:11800215-11800335 1.0000 120 chr3L:12299033-12299153 1.0000 120 chr2R:9983992-9984112 1.0000 120 chr2R:13615324-13615444 1.0000 120 chr2L:20784805-20784925 1.0000 120 chr3R:26248827-26248947 1.0000 120 chr3L:19157231-19157351 1.0000 120 chrX:20685398-20685518 1.0000 120 chr2L:5601170-5601290 1.0000 120 chr2L:9988051-9988171 1.0000 120 chr3R:6421362-6421482 1.0000 120 chr2L:6695120-6695240 1.0000 120 chrX:20713458-20713578 1.0000 120 chrX:377539-377659 1.0000 120 chr3R:6796782-6796902 1.0000 120 chrX:22833065-22833185 1.0000 120 chr3R:16811058-16811178 1.0000 120 chr2R:19801456-19801576 1.0000 120 chr3R:21714311-21714431 1.0000 120 chr3L:17650137-17650257 1.0000 120 chr2L:17316201-17316321 1.0000 120 chr2L:12616771-12616891 1.0000 120 chr2L:14423515-14423635 1.0000 120 chr3R:16685148-16685268 1.0000 120 chr2R:11957547-11957667 1.0000 120 chr3L:4757592-4757712 1.0000 120 chr4:245262-245382 1.0000 120 chrX:20736194-20736314 1.0000 120 chr3R:8282110-8282230 1.0000 120 chr2L:21843524-21843644 1.0000 120 chr3R:26887296-26887416 1.0000 120 chr3L:13150663-13150783 1.0000 120 chr3R:16871137-16871257 1.0000 120 chr2R:15739380-15739500 1.0000 120 chr3R:20596729-20596849 1.0000 120 chr3R:23138580-23138700 1.0000 120 chr3R:8858466-8858586 1.0000 120 chr3R:4854338-4854458 1.0000 120 chr3R:10625802-10625922 1.0000 120 chrX:20691341-20691461 1.0000 120 chr2R:25051199-25051319 1.0000 120 chrX:8830970-8831090 1.0000 120 chr3L:2816762-2816882 1.0000 120 chr3L:22402281-22402401 1.0000 120 chr2R:23759272-23759392 1.0000 120 chrX:19785525-19785645 1.0000 120 chr2L:11449099-11449219 1.0000 120 chr2L:5412680-5412800 1.0000 120 chr2R:21727827-21727947 1.0000 120 chr3L:14231552-14231672 1.0000 120 chr2L:12900647-12900767 1.0000 120 chr3R:21665563-21665683 1.0000 120 chr3L:5797388-5797508 1.0000 120 chr3L:6498819-6498939 1.0000 120 chrX:14960991-14961111 1.0000 120 chrX:15661630-15661750 1.0000 120 chr2R:12209044-12209164 1.0000 120 chr2L:12814436-12814556 1.0000 120 chr3L:8541800-8541920 1.0000 120 chr3R:8675033-8675153 1.0000 120 chr2R:11400474-11400594 1.0000 120 chr2R:18155648-18155768 1.0000 120 chr3R:28261094-28261214 1.0000 120 chr3R:5028156-5028276 1.0000 120 chr2L:20774359-20774479 1.0000 120 chr2R:13617605-13617725 1.0000 120 chr2L:16302399-16302519 1.0000 120 chr3R:16936214-16936334 1.0000 120 chr2L:17382919-17383039 1.0000 120 chr3R:13988479-13988599 1.0000 120 chr2R:9986071-9986191 1.0000 120 chr2L:21853339-21853459 1.0000 120 chr2L:1426538-1426658 1.0000 120 chr2L:14233460-14233580 1.0000 120 chrX:7273013-7273133 1.0000 120 chr3L:13079233-13079353 1.0000 120 chr3L:16535118-16535238 1.0000 120 chr3L:12570675-12570795 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_cad/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/cad.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.27 C 0.236 G 0.231 T 0.263 Background letter frequencies (from file dataset with add-one prior applied): A 0.27 C 0.236 G 0.231 T 0.263 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTATGRC MEME-1 width = 8 sites = 134 llr = 1112 E-value = 1.2e-112 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTATGRC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a::4: pos.-specific C ::::1::8 probability G :::::761 matrix T aaa:93:1 bits 2.1 1.9 ** * 1.7 **** 1.5 ***** Relative 1.3 ****** Entropy 1.1 ******** (12.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTATGGC consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGRC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9986071-9986191 51 1.63e-05 CTATCATGCT TTTATGGC CGGCCAACTC chr3R:16936214-16936334 41 1.63e-05 AGATGCCGTC TTTATGGC CGGCGCAAAC chr3R:28261094-28261214 45 1.63e-05 GTTATTAATG TTTATGGC CGCACGCTGT chrX:20691341-20691461 61 1.63e-05 GGGAACATAT TTTATGGC CCGTGGCGGC chr3L:13150663-13150783 63 1.63e-05 TATTACGCCG TTTATGGC TTTTCAGCAT chr3R:26887296-26887416 94 1.63e-05 TTCTTCGCAT TTTATGGC CCGAACCTGT chrX:20736194-20736314 34 1.63e-05 AATTGCATCT TTTATGGC GCATGGCCAG chr2R:11957547-11957667 31 1.63e-05 GCAAAGATAA TTTATGGC CATGTTGGAC chr3R:16811058-16811178 3 1.63e-05 GT TTTATGGC TTTCATGTCT chrX:20713458-20713578 92 1.63e-05 AGAAAGGGTT TTTATGGC CTCACTCCTT chr3L:19157231-19157351 55 1.63e-05 ATTATTCTTT TTTATGGC CATGCAATAA chr2L:20784805-20784925 68 1.63e-05 AGCCGCTTGA TTTATGGC CCAGAGTATC chrX:19786241-19786361 45 1.63e-05 ATTAGCCCAT TTTATGGC GCATTTATGG chrX:20677653-20677773 53 1.63e-05 GGCCTGGATT TTTATGGC TTACGCAATC chr3L:8662915-8663035 48 1.63e-05 TGGCGATTTT TTTATGGC CAACGCATAA chr2L:3968463-3968583 42 1.63e-05 GACCTACAGT TTTATGGC CACTGGCAAT chr3R:30797946-30798066 54 1.63e-05 AGGCATATGT TTTATGGC CAAAACCTGA chrX:23023864-23023984 45 1.63e-05 TGCGGATCTC TTTATGGC CCGTGAGAGC chr3L:18318592-18318712 15 1.63e-05 TGCGGGCTAA TTTATGGC CTTGTCATAT chr3L:22375742-22375862 70 1.63e-05 CTCGGGTCAT TTTATGGC CAATGTACAC chr3R:13990870-13990990 28 1.63e-05 TTTTATGGAT TTTATGGC CCTTGCTATT chr2R:17144787-17144907 57 1.63e-05 CCGGCTTCAG TTTATGGC TGCAACAACG chr2L:15336684-15336804 12 1.63e-05 TTCGCGACAT TTTATGGC CCGCCCAGTG chr3R:14504661-14504781 4 1.63e-05 TGC TTTATGGC CACAATAGAA chr2L:8167555-8167675 110 1.63e-05 AAAAAATACT TTTATGGC GGA chr2L:4280743-4280863 74 1.63e-05 TTTTATTGTT TTTATGGC CACATGAACA chr2L:11722694-11722814 52 1.63e-05 CCGAAAATAG TTTATGGC GGAAGTCATT chr2L:7138114-7138234 59 1.63e-05 TAAATGCCGT TTTATGGC GCCATAGGAG chr2L:14446756-14446876 44 1.63e-05 GGCCAAGTGA TTTATGGC GTCTGTGTTG chr3R:21516337-21516457 37 1.63e-05 ACATTTCAAT TTTATGGC CACGCTCCGT chr2L:10551867-10551987 47 1.63e-05 TTATTAAAAT TTTATGGC CATCACATCG chr3R:18079117-18079237 70 1.63e-05 CGTCCCGGTT TTTATGGC TATAGGAATT chr2R:13240372-13240492 57 1.63e-05 AAATAGCGAT TTTATGGC CGGGCCACAG chr3R:31306003-31306123 77 1.63e-05 CCCATAAAAA TTTATGGC TTCGAAACAG chrX:9690687-9690807 28 1.63e-05 GGATTATGCA TTTATGGC ACCCCGCGGC chr2R:23181375-23181495 91 1.63e-05 TTTACACGTG TTTATGGC AGGTCATAAA chr3L:11931314-11931434 64 1.63e-05 GTGCCCGTTG TTTATGGC CAGCCAGCAT chr2L:20785472-20785592 60 1.63e-05 GCCATAAAAG TTTATGGC AGCCGGGAAA chr2L:12814436-12814556 19 3.53e-05 TCAGTCTGTG TTTATGAC TCTCGTCCTG chrX:15661630-15661750 52 3.53e-05 AAGGTGCAGT TTTATGAC TCCGCCAGGA chr3R:4854338-4854458 72 3.53e-05 CGGGTCATCT TTTATGAC ACCTGTAAAA chr3R:16685148-16685268 63 3.53e-05 CTGCAGCTGT TTTATGAC CGTCCAGAAG chr3R:6796782-6796902 76 3.53e-05 GAAGTTCGCG TTTATGAC AGATGGGGCA chr2L:21910794-21910914 54 3.53e-05 GGTGCCTGTA TTTATGAC CGGGGCTTCA chr2L:15314755-15314875 51 3.53e-05 AAATTCGGTT TTTATGAC ACCTGACAAA chr2L:12092014-12092134 60 3.53e-05 TGATGGGCAT TTTATGAC GGTTGGAATC chrX:960906-961026 71 3.53e-05 GTGTGTGGGT TTTATGAC TTTGTTATGA chr3L:17145864-17145984 49 3.53e-05 TTTCAACTTA TTTATGAC CACTTTTCGA chr3L:18119299-18119419 86 3.53e-05 CGAGAAAGGT TTTATGAC ACTTTCGGTC chr2L:10101425-10101545 72 3.53e-05 TATTAATTAT TTTATGAC ATCGTAAAAG chr2R:13541000-13541120 86 3.53e-05 TTGCTCTTGG TTTATGAC CGGCGCCGAG chr3L:19162691-19162811 29 3.53e-05 AAATGTTTAA TTTATGAC ATTGCAAAAA chr2R:19570273-19570393 27 3.53e-05 TGGCTTTCTT TTTATGAC ATTTGACATT chrX:1230506-1230626 21 3.53e-05 GTGCAGCAAC TTTATGAC GAGTCGTAAA chr2R:17773117-17773237 80 3.53e-05 AATTGCACTT TTTATGAC TCCCGAGACC chr3L:4017419-4017539 63 3.53e-05 AACCCATTGT TTTATGAC CCATTCTCAC chr3R:13988479-13988599 66 5.38e-05 GTGTCGAATT TTTATTGC CTTTGTGGTT chr3L:2816762-2816882 60 5.38e-05 TTATTATGTT TTTATTGC CTTTTGTTGT chr2R:25051199-25051319 68 5.38e-05 TTTGGTACAT TTTATTGC TTCCTGCAAC chr2L:17316201-17316321 57 5.38e-05 AAAGACACTT TTTATTGC TCATTCGACA chr3R:16950034-16950154 73 5.38e-05 GGTCTCTGGA TTTATTGC ACGTGGCGGG chr2L:16498766-16498886 15 5.38e-05 GGGTGTGTCG TTTATTGC CCCGACATAA chr3R:16951513-16951633 64 5.38e-05 GTTTTATGAT TTTATTGC ATTTACGCAT chrX:3422167-3422287 34 5.38e-05 TTTACCTTAT TTTATTGC AGGTTCCCCC chr3R:18559025-18559145 85 5.38e-05 TCGTGCCTTG TTTATTGC CCAGCTTGTA chr3R:12112145-12112265 71 5.38e-05 GCCAGTCTAT TTTATTGC AGAGGAAATC chr3R:9745591-9745711 15 5.38e-05 ATTCGTGCGG TTTATTGC CCTTCGCTGG chr2R:6576162-6576282 52 5.38e-05 AGAGTGTGGT TTTATTGC GCATACATAA chr3R:20662371-20662491 27 5.38e-05 ATGTTTGCCA TTTATTGC CCTGCCGTTG chr3L:11238211-11238331 108 5.38e-05 TTTCCACTGA TTTATTGC CCCAG chr3R:25615526-25615646 56 5.38e-05 GCAATAAATT TTTATTGC CCAGGCATAA chr2R:8604325-8604445 113 5.38e-05 CGTTGCGGGC TTTATTGC chr3R:22967746-22967866 25 5.38e-05 CTACGGCGAC TTTATTGC AACACAATGG chr2R:11455494-11455614 35 5.38e-05 GCCAGCATAT TTTATTGC CCAGCTTTTC chr2R:11794870-11794990 60 5.38e-05 CATAAAACAT TTTATTGC TCATCATGTG chr2L:1066756-1066876 33 5.38e-05 CCGCTGCTAT TTTATTGC ACTCGCCTTG chr2L:19703177-19703297 36 5.38e-05 GTTGGAAACT TTTATTGC CGCAATTATG chr2R:25116798-25116918 92 7.55e-05 TGGCGGCTAC TTTATTAC TTTAAGGTTT chr2L:4684398-4684518 89 7.55e-05 GATTAATCCT TTTATTAC CCTTTTTAAT chr2L:6695120-6695240 105 1.06e-04 TAGCACAAGT TTTACGGC CTTTTAAT chr3R:5266381-5266501 77 1.06e-04 AAATATTTGT TTTATGGG CGCATCATAA chrX:17179686-17179806 77 1.06e-04 TTCAGTTGGT TTTACGGC AGGTAATTAG chr3R:30667176-30667296 46 1.06e-04 GAAAACCTGG TTTATGGG TATCATAAAT chr3R:16914062-16914182 68 1.06e-04 GGGCCACGGA TTTATGGG GGCATCATAA chr3R:30650113-30650233 101 1.24e-04 CTTCTACTTT TTTATGGT GGTGACCCTC chr3R:18074172-18074292 18 1.24e-04 TGTGGACAGG TTTATGGT TCTCCATTGG chr3L:12570675-12570795 13 1.60e-04 TGTATGTAGT TTTATGAG ACTTACATTT chr3R:5028156-5028276 40 1.60e-04 TTTTTCCCGT TTTATGAG TCTGTCCCCC chr3L:4757592-4757712 81 1.60e-04 ATACTAAAAC TTTACGAC GGGCAGCAGA chrX:20685398-20685518 74 1.60e-04 GCTCAGCAGA TTTATGAG GTCCTCGCTG chr2L:12085126-12085246 45 1.60e-04 TGTCACTTGA TTTACGAC ACCTTCGACC chr2L:16582869-16582989 1 1.60e-04 . TTTACGAC TTTGAAGTGG chr3L:15223580-15223700 31 1.60e-04 GGTTGTAATT TTTACGAC CCTTCCTCTC chr2R:19840142-19840262 62 1.60e-04 TAGACCAGGT TTTACGAC TCGCATTGCC chr3L:788869-788989 59 1.60e-04 CGTAATGAAA TTTATGAG CCAACGCAGG chr2L:5599767-5599887 57 1.60e-04 GTCCCTGATT TTTACGAC TGGCCATAAA chr3R:31411736-31411856 72 1.60e-04 GCCTGGAATG TTTATGAG CTCATAAATT chr2R:18123986-18124106 95 1.60e-04 GAAATTATAA TTTATGAG TTGAGAAAAT chr2R:6199904-6200024 29 1.60e-04 acccttatgc tttacgac cgacaggtat chr2L:8811886-8812006 82 1.60e-04 TCGCGCGATT TTTACGAC CTGTGAGACG chr3L:8666836-8666956 53 1.60e-04 CTCAACGGGT TTTACGAC CTCCGTCCGT chr2L:19043943-19044063 60 1.60e-04 ACCATAAACA TTTATGAG CGTGTCGAAG chr3L:8664519-8664639 48 1.60e-04 GAAATATGTT TTTATGAG AGGATCATAA chr2R:11043840-11043960 11 1.60e-04 TTATTACCTT TTTATGAG CACGCCGGAG chr3R:10625802-10625922 109 1.81e-04 AAAAGTGGCT TTTATGAT TGGC chr2L:14423515-14423635 50 1.81e-04 ATAAATTAAA TTTATGAT GCTTATAAAT chr2L:12087614-12087734 113 1.81e-04 TAAGAGACTT TTTATGAT chr2L:3079749-3079869 43 1.81e-04 CATAAATCGA TTTATGAT GTGCGTAGAT chr3R:4529120-4529240 36 1.81e-04 AACGATTTAA TTTATGAT GGTCCTCTGC chrX:11322393-11322513 75 1.81e-04 GTCACTGGGA TTTATGAT CTTGTTTTCC chr2L:12632865-12632985 94 1.81e-04 CTTCCAGTGA TTTATGAT GCCTTTTTGT chr2L:7305652-7305772 51 1.81e-04 AGGTTTGGAT TTTATGAT ATATTTACAT chr3L:13079233-13079353 79 2.16e-04 CAGTTGAGAT TTTACTGC TCTGATTTGC chr2R:17751354-17751474 89 2.16e-04 CTTCGAATGA TTTACTGC CCGCCTGGAA chr2R:10844909-10845029 6 2.16e-04 AGTGA TTTATTGG CCCACTTGGC chr2R:9975412-9975532 25 2.16e-04 GACGCGCCTT TTTATTGG TGCACCTTCG chr3R:21793150-21793270 82 2.16e-04 AAAAAAGGAT TTTACTGC GATGCCATGC chr3L:15081184-15081304 39 2.16e-04 TAGTTTTTGG TTTATTGG GTTATAAAAT chr3L:14231552-14231672 30 2.53e-04 TAAATTGACA TTTATTGT ATTACAGGAT chrX:14677922-14678042 82 2.53e-04 GCATGAAGAA TTTATTGT CCGCGCTAAA chr3R:30473666-30473786 47 2.53e-04 TCGGACCCGT TTTATTGT CGTCAGTGCA chr2R:15755100-15755220 51 2.53e-04 AACCTCTTCT TTAATGGC CCGTCATAAA chr2L:16405958-16406078 76 2.94e-04 CTATAGATAC TTTACTAC TAGGTGCATC chr2R:11800215-11800335 82 3.68e-04 ACATGACGTT TTTATTAT GCCCAGCGTC chrX:7047100-7047220 109 3.68e-04 AAAAGCGATT TTTATGCC ATTT chrX:973406-973526 79 3.68e-04 TTAACCGCCT TTAATGAC TGGCATTCTG chr3R:16793137-16793257 69 3.68e-04 TCGTTCTCTT TTTATGCC CTGGCAATTA chr3R:16902134-16902254 91 3.68e-04 AATAAAAGTA TTAATGAC CATAACAAAC chr3L:17765542-17765662 77 3.84e-04 TATGAATGGC TTTACGGT TATGGCCGGG chr2L:11449099-11449219 63 4.04e-04 TCCCCCTTTT TTAATTGC CGATTGCGTG chr3L:20629829-20629949 100 4.04e-04 CATCCCCTGG TTAATTGC CCTGAAATTA chr3L:14783943-14784063 59 4.04e-04 CCGACCAACT TTAATTGC CGCAATTAAA chr2R:13617605-13617725 21 4.20e-04 GTTGAAAAGA TTTACGAG CCCGAAATTC chr3R:6995273-6995393 58 4.70e-04 TCCCGCTGGG TTTCTGGC CCCCGACCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGRC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9986071-9986191 1.6e-05 50_[+1]_62 chr3R:16936214-16936334 1.6e-05 40_[+1]_72 chr3R:28261094-28261214 1.6e-05 44_[+1]_68 chrX:20691341-20691461 1.6e-05 60_[+1]_52 chr3L:13150663-13150783 1.6e-05 62_[+1]_50 chr3R:26887296-26887416 1.6e-05 93_[+1]_19 chrX:20736194-20736314 1.6e-05 33_[+1]_79 chr2R:11957547-11957667 1.6e-05 30_[+1]_82 chr3R:16811058-16811178 1.6e-05 2_[+1]_110 chrX:20713458-20713578 1.6e-05 91_[+1]_21 chr3L:19157231-19157351 1.6e-05 54_[+1]_58 chr2L:20784805-20784925 1.6e-05 67_[+1]_45 chrX:19786241-19786361 1.6e-05 44_[+1]_68 chrX:20677653-20677773 1.6e-05 52_[+1]_60 chr3L:8662915-8663035 1.6e-05 47_[+1]_65 chr2L:3968463-3968583 1.6e-05 41_[+1]_71 chr3R:30797946-30798066 1.6e-05 53_[+1]_59 chrX:23023864-23023984 1.6e-05 44_[+1]_68 chr3L:18318592-18318712 1.6e-05 14_[+1]_98 chr3L:22375742-22375862 1.6e-05 69_[+1]_43 chr3R:13990870-13990990 1.6e-05 27_[+1]_85 chr2R:17144787-17144907 1.6e-05 56_[+1]_56 chr2L:15336684-15336804 1.6e-05 11_[+1]_101 chr3R:14504661-14504781 1.6e-05 3_[+1]_109 chr2L:8167555-8167675 1.6e-05 109_[+1]_3 chr2L:4280743-4280863 1.6e-05 73_[+1]_39 chr2L:11722694-11722814 1.6e-05 51_[+1]_61 chr2L:7138114-7138234 1.6e-05 58_[+1]_54 chr2L:14446756-14446876 1.6e-05 43_[+1]_69 chr3R:21516337-21516457 1.6e-05 36_[+1]_76 chr2L:10551867-10551987 1.6e-05 46_[+1]_66 chr3R:18079117-18079237 1.6e-05 69_[+1]_43 chr2R:13240372-13240492 1.6e-05 56_[+1]_56 chr3R:31306003-31306123 1.6e-05 76_[+1]_36 chrX:9690687-9690807 1.6e-05 27_[+1]_85 chr2R:23181375-23181495 1.6e-05 90_[+1]_22 chr3L:11931314-11931434 1.6e-05 63_[+1]_49 chr2L:20785472-20785592 1.6e-05 59_[+1]_53 chr2L:12814436-12814556 3.5e-05 18_[+1]_94 chrX:15661630-15661750 3.5e-05 51_[+1]_61 chr3R:4854338-4854458 3.5e-05 71_[+1]_41 chr3R:16685148-16685268 3.5e-05 62_[+1]_50 chr3R:6796782-6796902 3.5e-05 75_[+1]_37 chr2L:21910794-21910914 3.5e-05 53_[+1]_59 chr2L:15314755-15314875 3.5e-05 50_[+1]_62 chr2L:12092014-12092134 3.5e-05 59_[+1]_53 chrX:960906-961026 3.5e-05 70_[+1]_42 chr3L:17145864-17145984 3.5e-05 48_[+1]_64 chr3L:18119299-18119419 3.5e-05 85_[+1]_27 chr2L:10101425-10101545 3.5e-05 71_[+1]_41 chr2R:13541000-13541120 3.5e-05 85_[+1]_27 chr3L:19162691-19162811 3.5e-05 28_[+1]_84 chr2R:19570273-19570393 3.5e-05 26_[+1]_86 chrX:1230506-1230626 3.5e-05 20_[+1]_92 chr2R:17773117-17773237 3.5e-05 79_[+1]_33 chr3L:4017419-4017539 3.5e-05 62_[+1]_50 chr3R:13988479-13988599 5.4e-05 65_[+1]_47 chr3L:2816762-2816882 5.4e-05 59_[+1]_53 chr2R:25051199-25051319 5.4e-05 67_[+1]_45 chr2L:17316201-17316321 5.4e-05 56_[+1]_56 chr3R:16950034-16950154 5.4e-05 72_[+1]_40 chr2L:16498766-16498886 5.4e-05 14_[+1]_98 chr3R:16951513-16951633 5.4e-05 63_[+1]_49 chrX:3422167-3422287 5.4e-05 33_[+1]_79 chr3R:18559025-18559145 5.4e-05 84_[+1]_28 chr3R:12112145-12112265 5.4e-05 70_[+1]_42 chr3R:9745591-9745711 5.4e-05 14_[+1]_98 chr2R:6576162-6576282 5.4e-05 51_[+1]_61 chr3R:20662371-20662491 5.4e-05 26_[+1]_86 chr3L:11238211-11238331 5.4e-05 107_[+1]_5 chr3R:25615526-25615646 5.4e-05 55_[+1]_57 chr2R:8604325-8604445 5.4e-05 112_[+1] chr3R:22967746-22967866 5.4e-05 24_[+1]_88 chr2R:11455494-11455614 5.4e-05 34_[+1]_78 chr2R:11794870-11794990 5.4e-05 59_[+1]_53 chr2L:1066756-1066876 5.4e-05 32_[+1]_80 chr2L:19703177-19703297 5.4e-05 35_[+1]_77 chr2R:25116798-25116918 7.5e-05 91_[+1]_21 chr2L:4684398-4684518 7.5e-05 88_[+1]_24 chr2L:6695120-6695240 0.00011 104_[+1]_8 chr3R:5266381-5266501 0.00011 76_[+1]_36 chrX:17179686-17179806 0.00011 76_[+1]_36 chr3R:30667176-30667296 0.00011 45_[+1]_67 chr3R:16914062-16914182 0.00011 67_[+1]_45 chr3R:30650113-30650233 0.00012 100_[+1]_12 chr3R:18074172-18074292 0.00012 17_[+1]_95 chr3L:12570675-12570795 0.00016 12_[+1]_100 chr3R:5028156-5028276 0.00016 39_[+1]_73 chr3L:4757592-4757712 0.00016 80_[+1]_32 chrX:20685398-20685518 0.00016 73_[+1]_39 chr2L:12085126-12085246 0.00016 44_[+1]_68 chr2L:16582869-16582989 0.00016 [+1]_112 chr3L:15223580-15223700 0.00016 30_[+1]_82 chr2R:19840142-19840262 0.00016 61_[+1]_51 chr3L:788869-788989 0.00016 58_[+1]_54 chr2L:5599767-5599887 0.00016 56_[+1]_56 chr3R:31411736-31411856 0.00016 71_[+1]_41 chr2R:18123986-18124106 0.00016 94_[+1]_18 chr2R:6199904-6200024 0.00016 28_[+1]_84 chr2L:8811886-8812006 0.00016 81_[+1]_31 chr3L:8666836-8666956 0.00016 52_[+1]_60 chr2L:19043943-19044063 0.00016 59_[+1]_53 chr3L:8664519-8664639 0.00016 47_[+1]_65 chr2R:11043840-11043960 0.00016 10_[+1]_102 chr3R:10625802-10625922 0.00018 108_[+1]_4 chr2L:14423515-14423635 0.00018 49_[+1]_63 chr2L:12087614-12087734 0.00018 112_[+1] chr2L:3079749-3079869 0.00018 42_[+1]_70 chr3R:4529120-4529240 0.00018 35_[+1]_77 chrX:11322393-11322513 0.00018 74_[+1]_38 chr2L:12632865-12632985 0.00018 93_[+1]_19 chr2L:7305652-7305772 0.00018 50_[+1]_62 chr3L:13079233-13079353 0.00022 78_[+1]_34 chr2R:17751354-17751474 0.00022 88_[+1]_24 chr2R:10844909-10845029 0.00022 5_[+1]_107 chr2R:9975412-9975532 0.00022 24_[+1]_88 chr3R:21793150-21793270 0.00022 81_[+1]_31 chr3L:15081184-15081304 0.00022 38_[+1]_74 chr3L:14231552-14231672 0.00025 29_[+1]_83 chrX:14677922-14678042 0.00025 81_[+1]_31 chr3R:30473666-30473786 0.00025 46_[+1]_66 chr2R:15755100-15755220 0.00025 50_[+1]_62 chr2L:16405958-16406078 0.00029 75_[+1]_37 chr2R:11800215-11800335 0.00037 81_[+1]_31 chrX:7047100-7047220 0.00037 108_[+1]_4 chrX:973406-973526 0.00037 78_[+1]_34 chr3R:16793137-16793257 0.00037 68_[+1]_44 chr3R:16902134-16902254 0.00037 90_[+1]_22 chr3L:17765542-17765662 0.00038 76_[+1]_36 chr2L:11449099-11449219 0.0004 62_[+1]_50 chr3L:20629829-20629949 0.0004 99_[+1]_13 chr3L:14783943-14784063 0.0004 58_[+1]_54 chr2R:13617605-13617725 0.00042 20_[+1]_92 chr3R:6995273-6995393 0.00047 57_[+1]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGRC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTATGRC width=8 seqs=134 chr2R:9986071-9986191 ( 51) TTTATGGC 1 chr3R:16936214-16936334 ( 41) TTTATGGC 1 chr3R:28261094-28261214 ( 45) TTTATGGC 1 chrX:20691341-20691461 ( 61) TTTATGGC 1 chr3L:13150663-13150783 ( 63) TTTATGGC 1 chr3R:26887296-26887416 ( 94) TTTATGGC 1 chrX:20736194-20736314 ( 34) TTTATGGC 1 chr2R:11957547-11957667 ( 31) TTTATGGC 1 chr3R:16811058-16811178 ( 3) TTTATGGC 1 chrX:20713458-20713578 ( 92) TTTATGGC 1 chr3L:19157231-19157351 ( 55) TTTATGGC 1 chr2L:20784805-20784925 ( 68) TTTATGGC 1 chrX:19786241-19786361 ( 45) TTTATGGC 1 chrX:20677653-20677773 ( 53) TTTATGGC 1 chr3L:8662915-8663035 ( 48) TTTATGGC 1 chr2L:3968463-3968583 ( 42) TTTATGGC 1 chr3R:30797946-30798066 ( 54) TTTATGGC 1 chrX:23023864-23023984 ( 45) TTTATGGC 1 chr3L:18318592-18318712 ( 15) TTTATGGC 1 chr3L:22375742-22375862 ( 70) TTTATGGC 1 chr3R:13990870-13990990 ( 28) TTTATGGC 1 chr2R:17144787-17144907 ( 57) TTTATGGC 1 chr2L:15336684-15336804 ( 12) TTTATGGC 1 chr3R:14504661-14504781 ( 4) TTTATGGC 1 chr2L:8167555-8167675 ( 110) TTTATGGC 1 chr2L:4280743-4280863 ( 74) TTTATGGC 1 chr2L:11722694-11722814 ( 52) TTTATGGC 1 chr2L:7138114-7138234 ( 59) TTTATGGC 1 chr2L:14446756-14446876 ( 44) TTTATGGC 1 chr3R:21516337-21516457 ( 37) TTTATGGC 1 chr2L:10551867-10551987 ( 47) TTTATGGC 1 chr3R:18079117-18079237 ( 70) TTTATGGC 1 chr2R:13240372-13240492 ( 57) TTTATGGC 1 chr3R:31306003-31306123 ( 77) TTTATGGC 1 chrX:9690687-9690807 ( 28) TTTATGGC 1 chr2R:23181375-23181495 ( 91) TTTATGGC 1 chr3L:11931314-11931434 ( 64) TTTATGGC 1 chr2L:20785472-20785592 ( 60) TTTATGGC 1 chr2L:12814436-12814556 ( 19) TTTATGAC 1 chrX:15661630-15661750 ( 52) TTTATGAC 1 chr3R:4854338-4854458 ( 72) TTTATGAC 1 chr3R:16685148-16685268 ( 63) TTTATGAC 1 chr3R:6796782-6796902 ( 76) TTTATGAC 1 chr2L:21910794-21910914 ( 54) TTTATGAC 1 chr2L:15314755-15314875 ( 51) TTTATGAC 1 chr2L:12092014-12092134 ( 60) TTTATGAC 1 chrX:960906-961026 ( 71) TTTATGAC 1 chr3L:17145864-17145984 ( 49) TTTATGAC 1 chr3L:18119299-18119419 ( 86) TTTATGAC 1 chr2L:10101425-10101545 ( 72) TTTATGAC 1 chr2R:13541000-13541120 ( 86) TTTATGAC 1 chr3L:19162691-19162811 ( 29) TTTATGAC 1 chr2R:19570273-19570393 ( 27) TTTATGAC 1 chrX:1230506-1230626 ( 21) TTTATGAC 1 chr2R:17773117-17773237 ( 80) TTTATGAC 1 chr3L:4017419-4017539 ( 63) TTTATGAC 1 chr3R:13988479-13988599 ( 66) TTTATTGC 1 chr3L:2816762-2816882 ( 60) TTTATTGC 1 chr2R:25051199-25051319 ( 68) TTTATTGC 1 chr2L:17316201-17316321 ( 57) TTTATTGC 1 chr3R:16950034-16950154 ( 73) TTTATTGC 1 chr2L:16498766-16498886 ( 15) TTTATTGC 1 chr3R:16951513-16951633 ( 64) TTTATTGC 1 chrX:3422167-3422287 ( 34) TTTATTGC 1 chr3R:18559025-18559145 ( 85) TTTATTGC 1 chr3R:12112145-12112265 ( 71) TTTATTGC 1 chr3R:9745591-9745711 ( 15) TTTATTGC 1 chr2R:6576162-6576282 ( 52) TTTATTGC 1 chr3R:20662371-20662491 ( 27) TTTATTGC 1 chr3L:11238211-11238331 ( 108) TTTATTGC 1 chr3R:25615526-25615646 ( 56) TTTATTGC 1 chr2R:8604325-8604445 ( 113) TTTATTGC 1 chr3R:22967746-22967866 ( 25) TTTATTGC 1 chr2R:11455494-11455614 ( 35) TTTATTGC 1 chr2R:11794870-11794990 ( 60) TTTATTGC 1 chr2L:1066756-1066876 ( 33) TTTATTGC 1 chr2L:19703177-19703297 ( 36) TTTATTGC 1 chr2R:25116798-25116918 ( 92) TTTATTAC 1 chr2L:4684398-4684518 ( 89) TTTATTAC 1 chr2L:6695120-6695240 ( 105) TTTACGGC 1 chr3R:5266381-5266501 ( 77) TTTATGGG 1 chrX:17179686-17179806 ( 77) TTTACGGC 1 chr3R:30667176-30667296 ( 46) TTTATGGG 1 chr3R:16914062-16914182 ( 68) TTTATGGG 1 chr3R:30650113-30650233 ( 101) TTTATGGT 1 chr3R:18074172-18074292 ( 18) TTTATGGT 1 chr3L:12570675-12570795 ( 13) TTTATGAG 1 chr3R:5028156-5028276 ( 40) TTTATGAG 1 chr3L:4757592-4757712 ( 81) TTTACGAC 1 chrX:20685398-20685518 ( 74) TTTATGAG 1 chr2L:12085126-12085246 ( 45) TTTACGAC 1 chr2L:16582869-16582989 ( 1) TTTACGAC 1 chr3L:15223580-15223700 ( 31) TTTACGAC 1 chr2R:19840142-19840262 ( 62) TTTACGAC 1 chr3L:788869-788989 ( 59) TTTATGAG 1 chr2L:5599767-5599887 ( 57) TTTACGAC 1 chr3R:31411736-31411856 ( 72) TTTATGAG 1 chr2R:18123986-18124106 ( 95) TTTATGAG 1 chr2R:6199904-6200024 ( 29) TTTACGAC 1 chr2L:8811886-8812006 ( 82) TTTACGAC 1 chr3L:8666836-8666956 ( 53) TTTACGAC 1 chr2L:19043943-19044063 ( 60) TTTATGAG 1 chr3L:8664519-8664639 ( 48) TTTATGAG 1 chr2R:11043840-11043960 ( 11) TTTATGAG 1 chr3R:10625802-10625922 ( 109) TTTATGAT 1 chr2L:14423515-14423635 ( 50) TTTATGAT 1 chr2L:12087614-12087734 ( 113) TTTATGAT 1 chr2L:3079749-3079869 ( 43) TTTATGAT 1 chr3R:4529120-4529240 ( 36) TTTATGAT 1 chrX:11322393-11322513 ( 75) TTTATGAT 1 chr2L:12632865-12632985 ( 94) TTTATGAT 1 chr2L:7305652-7305772 ( 51) TTTATGAT 1 chr3L:13079233-13079353 ( 79) TTTACTGC 1 chr2R:17751354-17751474 ( 89) TTTACTGC 1 chr2R:10844909-10845029 ( 6) TTTATTGG 1 chr2R:9975412-9975532 ( 25) TTTATTGG 1 chr3R:21793150-21793270 ( 82) TTTACTGC 1 chr3L:15081184-15081304 ( 39) TTTATTGG 1 chr3L:14231552-14231672 ( 30) TTTATTGT 1 chrX:14677922-14678042 ( 82) TTTATTGT 1 chr3R:30473666-30473786 ( 47) TTTATTGT 1 chr2R:15755100-15755220 ( 51) TTAATGGC 1 chr2L:16405958-16406078 ( 76) TTTACTAC 1 chr2R:11800215-11800335 ( 82) TTTATTAT 1 chrX:7047100-7047220 ( 109) TTTATGCC 1 chrX:973406-973526 ( 79) TTAATGAC 1 chr3R:16793137-16793257 ( 69) TTTATGCC 1 chr3R:16902134-16902254 ( 91) TTAATGAC 1 chr3L:17765542-17765662 ( 77) TTTACGGT 1 chr2L:11449099-11449219 ( 63) TTAATTGC 1 chr3L:20629829-20629949 ( 100) TTAATTGC 1 chr3L:14783943-14784063 ( 59) TTAATTGC 1 chr2R:13617605-13617725 ( 21) TTTACGAG 1 chr3R:6995273-6995393 ( 58) TTTCTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGRC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.49657 E= 1.2e-112 -1371 -1371 -1371 192 -1371 -1371 -1371 192 -259 -1371 -1371 186 188 -498 -1371 -1371 -1371 -90 -1371 173 -1371 -1371 165 7 50 -398 139 -1371 -1371 170 -95 -123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGRC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 134 E= 1.2e-112 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.044776 0.000000 0.000000 0.955224 0.992537 0.007463 0.000000 0.000000 0.000000 0.126866 0.000000 0.873134 0.000000 0.000000 0.723881 0.276119 0.380597 0.014925 0.604478 0.000000 0.000000 0.768657 0.119403 0.111940 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGRC MEME-1 regular expression -------------------------------------------------------------------------------- TTTAT[GT][GA]C -------------------------------------------------------------------------------- Time 7.36 secs. ******************************************************************************** ******************************************************************************** MOTIF GYCATAAA MEME-2 width = 8 sites = 123 llr = 1004 E-value = 4.0e-088 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYCATAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2:39:aaa pos.-specific C 267::::: probability G 6::1:::: matrix T :4::a::: bits 2.1 1.9 **** 1.7 **** 1.5 **** Relative 1.3 ****** Entropy 1.1 ****** (11.8 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCATAAA consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCATAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7273013-7273133 57 1.80e-05 CAAGGGGTCG GCCATAAA GAACCCGGGG chr2R:13617605-13617725 61 1.80e-05 AAGAGAGTGA GCCATAAA TTAGCCGTCG chr2L:6695120-6695240 31 1.80e-05 ATGTAATACC GCCATAAA AACACACGCA chr3L:12299033-12299153 46 1.80e-05 GAAGAGCCTG GCCATAAA TGTCCTCACA chr3R:31527999-31528119 43 1.80e-05 CTCTTTTTGG GCCATAAA CCTGAATGGC chr2R:11042688-11042808 92 1.80e-05 ATTTTATAGA GCCATAAA TCAAAGCAAG chr2L:12087614-12087734 13 1.80e-05 AGGCATCGGT GCCATAAA CGCTGCAAGT chr3R:16730218-16730338 3 1.80e-05 CG GCCATAAA CCACTTCGCC chr3R:16752396-16752516 4 1.80e-05 ACG GCCATAAA ACACTTTTGG chr3R:12112145-12112265 17 1.80e-05 AATAACACAA GCCATAAA CTGGCGAATT chr2L:10101425-10101545 112 1.80e-05 CTAAGAGCTG GCCATAAA T chr3L:4264046-4264166 39 1.80e-05 AGTTAGGCAT GCCATAAA GCACCGGGTG chrX:10808601-10808721 41 1.80e-05 CAATACGGGT GCCATAAA ACGTTAGAGT chr2L:7138114-7138234 109 1.80e-05 GATTGTAGTG GCCATAAA CAAT chrX:12205752-12205872 29 1.80e-05 GCCGCTTGTG GCCATAAA TCAATGCCGA chr3R:21793150-21793270 67 1.80e-05 ATTGGGCTAG GCCATAAA AAAGGATTTT chrX:18891853-18891973 57 1.80e-05 CGATTTCGTG GCCATAAA CATTAATGAG chr2L:5599767-5599887 67 1.80e-05 TTTACGACTG GCCATAAA TTAGGGAACC chr3R:30473666-30473786 76 1.80e-05 TAAAGTAAAC GCCATAAA ACAATCCGCT chr3L:2193329-2193449 60 1.80e-05 TTCGCGCAGT GCCATAAA TAACGAATTG chr3R:26792769-26792889 102 1.80e-05 ACAAGTCCTG GCCATAAA ACAGTCTAAG chrX:3393901-3394021 30 1.80e-05 AGGTGAAAGT GCCATAAA AATGCGACAT chr2R:8604325-8604445 7 1.80e-05 TGCTCG GCCATAAA AGCAAAACGA chr3L:401561-401681 58 1.80e-05 CCAGCTCAGG GCCATAAA ACAATAAAAG chr2R:22155577-22155697 20 1.80e-05 GGAAACTGCG GCCATAAA ACAGCATGAG chrX:2430856-2430976 73 1.80e-05 AAAACAGCAG GCCATAAA ACCATATATT chr3R:6965162-6965282 54 1.80e-05 AGGGAACACG GCCATAAA AAAGTTGTAG chr2R:11794870-11794990 48 1.80e-05 AGGGACCATG GCCATAAA ACATTTTATT chr3R:7033814-7033934 47 1.80e-05 GGACCTAGGA GCCATAAA ACAGCAAGGA chr3L:11931314-11931434 38 1.80e-05 TGTTGCCGCG GCCATAAA TAAAAAGGGT chr2L:20785472-20785592 50 1.80e-05 GCGTCTTGCA GCCATAAA AGTTTATGGC chr2L:16302399-16302519 73 3.80e-05 CAATGGAGTG GTCATAAA AACTACACAC chr2L:12900647-12900767 93 3.80e-05 ACAATGGAAG GTCATAAA aatttaatga chr2L:5412680-5412800 62 3.80e-05 CGTGCTAAAA GTCATAAA ATTAAATATG chrX:19785525-19785645 16 3.80e-05 ATACATGATT GTCATAAA AAATCAGCAA chr2L:21843524-21843644 82 3.80e-05 CGGCTCGATA GTCATAAA TCTGTCAAAA chr3R:8282110-8282230 35 3.80e-05 CAATTATTAA GTCATAAA ACGGACAACG chr2L:17316201-17316321 41 3.80e-05 TGTCATATGG GTCATAAA AGACACTTTT chr3R:6421362-6421482 61 3.80e-05 GTGCTTCGTT GTCATAAA TATAAAACTC chr2L:8167555-8167675 86 3.80e-05 AAAAGTGACT GTCATAAA ACGACCAAAA chr3L:747419-747539 45 3.80e-05 TGTTGCAGCA GTCATAAA ATTATGATCG chr3L:266791-266911 21 3.80e-05 GTCTTGGTGC GTCATAAA TTTCATGGTT chr3L:6827834-6827954 10 3.80e-05 CTTGTTGGT GTCATAAA TCGTTATCGA chr2L:21741564-21741684 61 3.80e-05 GTACCAGGAT GTCATAAA ACGGATTATG chr3R:17082252-17082372 29 3.80e-05 ACATATGTCC GTCATAAA TGGCAGCTGC chr2L:8811886-8812006 50 3.80e-05 TTATTGTTCA GTCATAAA TCTTATGGAG chr2R:23181375-23181495 101 3.80e-05 TTTATGGCAG GTCATAAA TGGTTCGACA chr2R:15755100-15755220 61 3.80e-05 TTAATGGCCC GTCATAAA AGTGTAAATC chr3L:16535118-16535238 51 7.70e-05 AATATTGAGA GCAATAAA ACCGGTCAAG chr3L:8541800-8541920 48 7.70e-05 CCTGGACAGG GCAATAAA AAATACCCCT chrX:8830970-8831090 42 7.70e-05 AGTGTGCCGG CCCATAAA AGTCACTTGG chr3L:17650137-17650257 103 7.70e-05 GCACCTCGGA CCCATAAA TCCCAGCGCA chr3L:19157231-19157351 66 7.70e-05 TTATGGCCAT GCAATAAA AATATTTACG chr2L:15314755-15314875 36 7.70e-05 CTGCACATGC GCAATAAA TTCGGTTTTT chr3R:30902959-30903079 103 7.70e-05 ACGAGTCGCG GCAATAAA TCGATTGCCA chr3R:30041059-30041179 60 7.70e-05 CGCGGGTATG GCAATAAA ACAGGCAGAT chr3R:16950034-16950154 45 7.70e-05 aacaCCGAGC CCCATAAA TCCTGATTAT chr3L:22375742-22375862 100 7.70e-05 CGTGTTTAGG CCCATAAA AACCATGTCG chr3R:14504661-14504781 50 7.70e-05 TGGCGGCTGG GCAATAAA CATACCTTCC chr2L:11722694-11722814 14 7.70e-05 CCTGTGCTGG GCAATAAA GTTGTTGGAA chr2L:1402357-1402477 79 7.70e-05 CCCGGAGGCA GCAATAAA AACCGCAATA chr3L:788869-788989 39 7.70e-05 GCAAAACTGT GCAATAAA AGCGTAATGA chr3R:4640339-4640459 83 7.70e-05 CCAGCTGACA CCCATAAA CGCTAAGCTC chr3L:18362554-18362674 57 7.70e-05 AATTATGGCA GCAATAAA ACATTTTTCC chr3R:25615526-25615646 46 7.70e-05 ACACAGGCAC GCAATAAA TTTTTATTGC chr2L:7304456-7304576 17 7.70e-05 AAACAGGAGG CCCATAAA GTTGTAGTGT chr3R:31306003-31306123 67 7.70e-05 TTGCATGAGG CCCATAAA AATTTATGGC chr3R:22967746-22967866 57 7.70e-05 TTAAGTGGCA GCAATAAA AATGATTTAT chr2L:20772988-20773108 84 7.70e-05 ATCCATTAAG CCCATAAA ATCTGTTGGC chr3R:5028156-5028276 18 9.80e-05 CCAAGAGAAA ACCATAAA AAGATTTTTC chrX:377539-377659 61 9.80e-05 ATTATGAGCC ACCATAAA ATGCCATTAA chr3L:18588516-18588636 113 9.80e-05 TTCTTAAAGA ACCATAAA chr2L:19043943-19044063 50 9.80e-05 CGTTAACGGC ACCATAAA CATTTATGAG chr2R:15739380-15739500 70 1.41e-04 AAGAAAGGCG GTAATAAA ATCACTCGAG chr2R:19801456-19801576 41 1.41e-04 TCTGGCTTAA CTCATAAA AAAGTGCCGG chrX:22833065-22833185 54 1.41e-04 taaacactgg gtaataaa aaaatatccg chr2L:5601170-5601290 102 1.41e-04 GGAAACAAAT GTAATAAA AACTAGCCGT chr2L:3968463-3968583 105 1.41e-04 AAGGCTGGCG CTCATAAA TAACATGC chr2R:11709491-11709611 2 1.41e-04 C CTCATAAA TATTTGAATC chr2L:3005646-3005766 68 1.41e-04 TTTTAGGGCC CTCATAAA TTATCATCTC chr2L:21341816-21341936 52 1.41e-04 ACGGTAAACA GTAATAAA ATAACGGTGC chr3R:12645430-12645550 111 1.41e-04 ACGTCTTGGG CTCATAAA TC chr2L:14383966-14384086 51 1.41e-04 TCAGTTTTCT GTAATAAA TCAAAAGGAG chr3R:31411736-31411856 80 1.41e-04 TGTTTATGAG CTCATAAA TTCTGACACA chr2L:11078496-11078616 100 1.41e-04 CTTGCTGCAG CTCATAAA ATGTTGCTGC chr3R:5266381-5266501 88 1.65e-04 TTATGGGCGC ATCATAAA AAAGTCGTAA chr3R:14570735-14570855 37 1.65e-04 GCTGGGTGCG ATCATAAA AGATGGCCGA chr2L:15336684-15336804 65 1.65e-04 TGGCAGACTG ATCATAAA TTACATATGT chr2L:3079749-3079869 31 1.65e-04 GACAAACATC ATCATAAA TCGATTTATG chr3R:30667176-30667296 55 1.65e-04 GTTTATGGGT ATCATAAA TTGTTGTTTG chr3L:2197143-2197263 71 1.65e-04 TTTCCGCAAA ATCATAAA CACATTTGGT chr3R:16914062-16914182 79 1.65e-04 TTATGGGGGC ATCATAAA ACAATTAACA chr3R:18074172-18074292 68 1.65e-04 ACACTTGGCC ATCATAAA TTATCCTCGT chr3L:8664519-8664639 59 1.65e-04 TTATGAGAGG ATCATAAA TTTTTTTTCC chr2L:21853339-21853459 98 1.80e-04 GGCTGTCAAG GCCGTAAA TCTAGAATAG chr2L:8294534-8294654 34 1.80e-04 TTGAGTGCAG GCCGTAAA AAGATAAAAA chr2R:9983992-9984112 9 1.97e-04 TAATGACC GTCGTAAA GCCGCAGGAG chr3L:15715288-15715408 62 1.97e-04 CGTCGTAGTC GTCGTAAA TAAATTTCTG chrX:1230506-1230626 31 1.97e-04 TTTATGACGA GTCGTAAA AGAGGAATAA chrX:2438408-2438528 46 2.18e-04 TTAAGCCAGC CCAATAAA AATCGGCTCT chr2L:9421461-9421581 32 2.18e-04 CCATAACGAG CCAATAAA CGATGCAGCC chr3R:16902134-16902254 79 2.18e-04 TCGCTCAGGG CCAATAAA AGTATTAATG chr2L:14423515-14423635 11 2.42e-04 TATTATGCGC ACAATAAA CGCGGCGGGC chr2L:20775796-20775916 21 2.42e-04 GCTTAACAAT ACAATAAA GTAGCAATAA chr2R:14815238-14815358 58 2.42e-04 AAAAACGAAA ACAATAAA GCAGTAAAAA chr3L:12570675-12570795 41 2.66e-04 ATATTGTCCA CTAATAAA ATTAATGGAT chrX:17179686-17179806 41 2.66e-04 GTTACGACGG CTAATAAA TCCATTTTGG chr3R:21516337-21516457 64 2.66e-04 TCCAAAAAGG CTAATAAA ATATTGAAAA chr2R:18155648-18155768 61 2.93e-04 CAAGAGTAGC ATAATAAA CCTCAGCGCG chr3R:6796782-6796902 52 3.26e-04 TGAAAATGAC GCAGTAAA AATTAAGAAG chr3R:26248827-26248947 54 3.26e-04 GGACTTGAGC CCCGTAAA GTGCCTTTAA chr2R:9975412-9975532 62 3.26e-04 CAGGATAACA GCAGTAAA AGCGACGACG chr3R:16871137-16871257 40 3.44e-04 TCTACCGCTG ACCGTAAA ATTTTAATAT chr3R:30383332-30383452 64 3.64e-04 GAACTATTCG GACATAAA TCATCTCCTG chr2L:16498766-16498886 26 3.64e-04 TTATTGCCCC GACATAAA TGTTTTTATG chr3L:2385482-2385602 72 4.02e-04 GAGGAAGTGG CTCGTAAA AAGGGAGCCA chr3R:10625802-10625922 2 4.22e-04 G ATCGTAAA ATGTCTGGGC chr3L:20629829-20629949 15 4.22e-04 GAGCAGAGCG ATCGTAAA TTGCCAATGG chr3R:19338995-19339115 56 4.22e-04 CAAAATGACA ATCGTAAA CGGCACCGCA chrX:9690687-9690807 6 4.22e-04 AAGCG ATCGTAAA ACGTGGATTA chr3L:4017419-4017539 93 4.22e-04 GCGGTAAGCG ATCGTAAA ATTTGAATAA chr3L:22402281-22402401 18 4.60e-04 TGCAGCAATT ACAGTAAA CAACAATCAT chr2L:20774359-20774479 22 5.05e-04 TATATCTAGC CACATAAA TAATCGAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCATAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7273013-7273133 1.8e-05 56_[+2]_56 chr2R:13617605-13617725 1.8e-05 60_[+2]_52 chr2L:6695120-6695240 1.8e-05 30_[+2]_82 chr3L:12299033-12299153 1.8e-05 45_[+2]_67 chr3R:31527999-31528119 1.8e-05 42_[+2]_70 chr2R:11042688-11042808 1.8e-05 91_[+2]_21 chr2L:12087614-12087734 1.8e-05 12_[+2]_100 chr3R:16730218-16730338 1.8e-05 2_[+2]_110 chr3R:16752396-16752516 1.8e-05 3_[+2]_109 chr3R:12112145-12112265 1.8e-05 16_[+2]_96 chr2L:10101425-10101545 1.8e-05 111_[+2]_1 chr3L:4264046-4264166 1.8e-05 38_[+2]_74 chrX:10808601-10808721 1.8e-05 40_[+2]_72 chr2L:7138114-7138234 1.8e-05 108_[+2]_4 chrX:12205752-12205872 1.8e-05 28_[+2]_84 chr3R:21793150-21793270 1.8e-05 66_[+2]_46 chrX:18891853-18891973 1.8e-05 56_[+2]_56 chr2L:5599767-5599887 1.8e-05 66_[+2]_46 chr3R:30473666-30473786 1.8e-05 75_[+2]_37 chr3L:2193329-2193449 1.8e-05 59_[+2]_53 chr3R:26792769-26792889 1.8e-05 101_[+2]_11 chrX:3393901-3394021 1.8e-05 29_[+2]_83 chr2R:8604325-8604445 1.8e-05 6_[+2]_106 chr3L:401561-401681 1.8e-05 57_[+2]_55 chr2R:22155577-22155697 1.8e-05 19_[+2]_93 chrX:2430856-2430976 1.8e-05 72_[+2]_40 chr3R:6965162-6965282 1.8e-05 53_[+2]_59 chr2R:11794870-11794990 1.8e-05 47_[+2]_65 chr3R:7033814-7033934 1.8e-05 46_[+2]_66 chr3L:11931314-11931434 1.8e-05 37_[+2]_75 chr2L:20785472-20785592 1.8e-05 49_[+2]_63 chr2L:16302399-16302519 3.8e-05 72_[+2]_40 chr2L:12900647-12900767 3.8e-05 92_[+2]_20 chr2L:5412680-5412800 3.8e-05 61_[+2]_51 chrX:19785525-19785645 3.8e-05 15_[+2]_97 chr2L:21843524-21843644 3.8e-05 81_[+2]_31 chr3R:8282110-8282230 3.8e-05 34_[+2]_78 chr2L:17316201-17316321 3.8e-05 40_[+2]_72 chr3R:6421362-6421482 3.8e-05 60_[+2]_52 chr2L:8167555-8167675 3.8e-05 85_[+2]_27 chr3L:747419-747539 3.8e-05 44_[+2]_68 chr3L:266791-266911 3.8e-05 20_[+2]_92 chr3L:6827834-6827954 3.8e-05 9_[+2]_103 chr2L:21741564-21741684 3.8e-05 60_[+2]_52 chr3R:17082252-17082372 3.8e-05 28_[+2]_84 chr2L:8811886-8812006 3.8e-05 49_[+2]_63 chr2R:23181375-23181495 3.8e-05 100_[+2]_12 chr2R:15755100-15755220 3.8e-05 60_[+2]_52 chr3L:16535118-16535238 7.7e-05 50_[+2]_62 chr3L:8541800-8541920 7.7e-05 47_[+2]_65 chrX:8830970-8831090 7.7e-05 41_[+2]_71 chr3L:17650137-17650257 7.7e-05 102_[+2]_10 chr3L:19157231-19157351 7.7e-05 65_[+2]_47 chr2L:15314755-15314875 7.7e-05 35_[+2]_77 chr3R:30902959-30903079 7.7e-05 102_[+2]_10 chr3R:30041059-30041179 7.7e-05 59_[+2]_53 chr3R:16950034-16950154 7.7e-05 44_[+2]_68 chr3L:22375742-22375862 7.7e-05 99_[+2]_13 chr3R:14504661-14504781 7.7e-05 49_[+2]_63 chr2L:11722694-11722814 7.7e-05 13_[+2]_99 chr2L:1402357-1402477 7.7e-05 78_[+2]_34 chr3L:788869-788989 7.7e-05 38_[+2]_74 chr3R:4640339-4640459 7.7e-05 82_[+2]_30 chr3L:18362554-18362674 7.7e-05 56_[+2]_56 chr3R:25615526-25615646 7.7e-05 45_[+2]_67 chr2L:7304456-7304576 7.7e-05 16_[+2]_96 chr3R:31306003-31306123 7.7e-05 66_[+2]_46 chr3R:22967746-22967866 7.7e-05 56_[+2]_56 chr2L:20772988-20773108 7.7e-05 83_[+2]_29 chr3R:5028156-5028276 9.8e-05 17_[+2]_95 chrX:377539-377659 9.8e-05 60_[+2]_52 chr3L:18588516-18588636 9.8e-05 112_[+2] chr2L:19043943-19044063 9.8e-05 49_[+2]_63 chr2R:15739380-15739500 0.00014 69_[+2]_43 chr2R:19801456-19801576 0.00014 40_[+2]_72 chrX:22833065-22833185 0.00014 53_[+2]_59 chr2L:5601170-5601290 0.00014 101_[+2]_11 chr2L:3968463-3968583 0.00014 104_[+2]_8 chr2R:11709491-11709611 0.00014 1_[+2]_111 chr2L:3005646-3005766 0.00014 67_[+2]_45 chr2L:21341816-21341936 0.00014 51_[+2]_61 chr3R:12645430-12645550 0.00014 110_[+2]_2 chr2L:14383966-14384086 0.00014 50_[+2]_62 chr3R:31411736-31411856 0.00014 79_[+2]_33 chr2L:11078496-11078616 0.00014 99_[+2]_13 chr3R:5266381-5266501 0.00016 87_[+2]_25 chr3R:14570735-14570855 0.00016 36_[+2]_76 chr2L:15336684-15336804 0.00016 64_[+2]_48 chr2L:3079749-3079869 0.00016 30_[+2]_82 chr3R:30667176-30667296 0.00016 54_[+2]_58 chr3L:2197143-2197263 0.00016 70_[+2]_42 chr3R:16914062-16914182 0.00016 78_[+2]_34 chr3R:18074172-18074292 0.00016 67_[+2]_45 chr3L:8664519-8664639 0.00016 58_[+2]_54 chr2L:21853339-21853459 0.00018 97_[+2]_15 chr2L:8294534-8294654 0.00018 33_[+2]_79 chr2R:9983992-9984112 0.0002 8_[+2]_104 chr3L:15715288-15715408 0.0002 61_[+2]_51 chrX:1230506-1230626 0.0002 30_[+2]_82 chrX:2438408-2438528 0.00022 45_[+2]_67 chr2L:9421461-9421581 0.00022 31_[+2]_81 chr3R:16902134-16902254 0.00022 78_[+2]_34 chr2L:14423515-14423635 0.00024 10_[+2]_102 chr2L:20775796-20775916 0.00024 20_[+2]_92 chr2R:14815238-14815358 0.00024 57_[+2]_55 chr3L:12570675-12570795 0.00027 40_[+2]_72 chrX:17179686-17179806 0.00027 40_[+2]_72 chr3R:21516337-21516457 0.00027 63_[+2]_49 chr2R:18155648-18155768 0.00029 60_[+2]_52 chr3R:6796782-6796902 0.00033 51_[+2]_61 chr3R:26248827-26248947 0.00033 53_[+2]_59 chr2R:9975412-9975532 0.00033 61_[+2]_51 chr3R:16871137-16871257 0.00034 39_[+2]_73 chr3R:30383332-30383452 0.00036 63_[+2]_49 chr2L:16498766-16498886 0.00036 25_[+2]_87 chr3L:2385482-2385602 0.0004 71_[+2]_41 chr3R:10625802-10625922 0.00042 1_[+2]_111 chr3L:20629829-20629949 0.00042 14_[+2]_98 chr3R:19338995-19339115 0.00042 55_[+2]_57 chrX:9690687-9690807 0.00042 5_[+2]_107 chr3L:4017419-4017539 0.00042 92_[+2]_20 chr3L:22402281-22402401 0.00046 17_[+2]_95 chr2L:20774359-20774479 0.0005 21_[+2]_91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCATAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYCATAAA width=8 seqs=123 chrX:7273013-7273133 ( 57) GCCATAAA 1 chr2R:13617605-13617725 ( 61) GCCATAAA 1 chr2L:6695120-6695240 ( 31) GCCATAAA 1 chr3L:12299033-12299153 ( 46) GCCATAAA 1 chr3R:31527999-31528119 ( 43) GCCATAAA 1 chr2R:11042688-11042808 ( 92) GCCATAAA 1 chr2L:12087614-12087734 ( 13) GCCATAAA 1 chr3R:16730218-16730338 ( 3) GCCATAAA 1 chr3R:16752396-16752516 ( 4) GCCATAAA 1 chr3R:12112145-12112265 ( 17) GCCATAAA 1 chr2L:10101425-10101545 ( 112) GCCATAAA 1 chr3L:4264046-4264166 ( 39) GCCATAAA 1 chrX:10808601-10808721 ( 41) GCCATAAA 1 chr2L:7138114-7138234 ( 109) GCCATAAA 1 chrX:12205752-12205872 ( 29) GCCATAAA 1 chr3R:21793150-21793270 ( 67) GCCATAAA 1 chrX:18891853-18891973 ( 57) GCCATAAA 1 chr2L:5599767-5599887 ( 67) GCCATAAA 1 chr3R:30473666-30473786 ( 76) GCCATAAA 1 chr3L:2193329-2193449 ( 60) GCCATAAA 1 chr3R:26792769-26792889 ( 102) GCCATAAA 1 chrX:3393901-3394021 ( 30) GCCATAAA 1 chr2R:8604325-8604445 ( 7) GCCATAAA 1 chr3L:401561-401681 ( 58) GCCATAAA 1 chr2R:22155577-22155697 ( 20) GCCATAAA 1 chrX:2430856-2430976 ( 73) GCCATAAA 1 chr3R:6965162-6965282 ( 54) GCCATAAA 1 chr2R:11794870-11794990 ( 48) GCCATAAA 1 chr3R:7033814-7033934 ( 47) GCCATAAA 1 chr3L:11931314-11931434 ( 38) GCCATAAA 1 chr2L:20785472-20785592 ( 50) GCCATAAA 1 chr2L:16302399-16302519 ( 73) GTCATAAA 1 chr2L:12900647-12900767 ( 93) GTCATAAA 1 chr2L:5412680-5412800 ( 62) GTCATAAA 1 chrX:19785525-19785645 ( 16) GTCATAAA 1 chr2L:21843524-21843644 ( 82) GTCATAAA 1 chr3R:8282110-8282230 ( 35) GTCATAAA 1 chr2L:17316201-17316321 ( 41) GTCATAAA 1 chr3R:6421362-6421482 ( 61) GTCATAAA 1 chr2L:8167555-8167675 ( 86) GTCATAAA 1 chr3L:747419-747539 ( 45) GTCATAAA 1 chr3L:266791-266911 ( 21) GTCATAAA 1 chr3L:6827834-6827954 ( 10) GTCATAAA 1 chr2L:21741564-21741684 ( 61) GTCATAAA 1 chr3R:17082252-17082372 ( 29) GTCATAAA 1 chr2L:8811886-8812006 ( 50) GTCATAAA 1 chr2R:23181375-23181495 ( 101) GTCATAAA 1 chr2R:15755100-15755220 ( 61) GTCATAAA 1 chr3L:16535118-16535238 ( 51) GCAATAAA 1 chr3L:8541800-8541920 ( 48) GCAATAAA 1 chrX:8830970-8831090 ( 42) CCCATAAA 1 chr3L:17650137-17650257 ( 103) CCCATAAA 1 chr3L:19157231-19157351 ( 66) GCAATAAA 1 chr2L:15314755-15314875 ( 36) GCAATAAA 1 chr3R:30902959-30903079 ( 103) GCAATAAA 1 chr3R:30041059-30041179 ( 60) GCAATAAA 1 chr3R:16950034-16950154 ( 45) CCCATAAA 1 chr3L:22375742-22375862 ( 100) CCCATAAA 1 chr3R:14504661-14504781 ( 50) GCAATAAA 1 chr2L:11722694-11722814 ( 14) GCAATAAA 1 chr2L:1402357-1402477 ( 79) GCAATAAA 1 chr3L:788869-788989 ( 39) GCAATAAA 1 chr3R:4640339-4640459 ( 83) CCCATAAA 1 chr3L:18362554-18362674 ( 57) GCAATAAA 1 chr3R:25615526-25615646 ( 46) GCAATAAA 1 chr2L:7304456-7304576 ( 17) CCCATAAA 1 chr3R:31306003-31306123 ( 67) CCCATAAA 1 chr3R:22967746-22967866 ( 57) GCAATAAA 1 chr2L:20772988-20773108 ( 84) CCCATAAA 1 chr3R:5028156-5028276 ( 18) ACCATAAA 1 chrX:377539-377659 ( 61) ACCATAAA 1 chr3L:18588516-18588636 ( 113) ACCATAAA 1 chr2L:19043943-19044063 ( 50) ACCATAAA 1 chr2R:15739380-15739500 ( 70) GTAATAAA 1 chr2R:19801456-19801576 ( 41) CTCATAAA 1 chrX:22833065-22833185 ( 54) GTAATAAA 1 chr2L:5601170-5601290 ( 102) GTAATAAA 1 chr2L:3968463-3968583 ( 105) CTCATAAA 1 chr2R:11709491-11709611 ( 2) CTCATAAA 1 chr2L:3005646-3005766 ( 68) CTCATAAA 1 chr2L:21341816-21341936 ( 52) GTAATAAA 1 chr3R:12645430-12645550 ( 111) CTCATAAA 1 chr2L:14383966-14384086 ( 51) GTAATAAA 1 chr3R:31411736-31411856 ( 80) CTCATAAA 1 chr2L:11078496-11078616 ( 100) CTCATAAA 1 chr3R:5266381-5266501 ( 88) ATCATAAA 1 chr3R:14570735-14570855 ( 37) ATCATAAA 1 chr2L:15336684-15336804 ( 65) ATCATAAA 1 chr2L:3079749-3079869 ( 31) ATCATAAA 1 chr3R:30667176-30667296 ( 55) ATCATAAA 1 chr3L:2197143-2197263 ( 71) ATCATAAA 1 chr3R:16914062-16914182 ( 79) ATCATAAA 1 chr3R:18074172-18074292 ( 68) ATCATAAA 1 chr3L:8664519-8664639 ( 59) ATCATAAA 1 chr2L:21853339-21853459 ( 98) GCCGTAAA 1 chr2L:8294534-8294654 ( 34) GCCGTAAA 1 chr2R:9983992-9984112 ( 9) GTCGTAAA 1 chr3L:15715288-15715408 ( 62) GTCGTAAA 1 chrX:1230506-1230626 ( 31) GTCGTAAA 1 chrX:2438408-2438528 ( 46) CCAATAAA 1 chr2L:9421461-9421581 ( 32) CCAATAAA 1 chr3R:16902134-16902254 ( 79) CCAATAAA 1 chr2L:14423515-14423635 ( 11) ACAATAAA 1 chr2L:20775796-20775916 ( 21) ACAATAAA 1 chr2R:14815238-14815358 ( 58) ACAATAAA 1 chr3L:12570675-12570795 ( 41) CTAATAAA 1 chrX:17179686-17179806 ( 41) CTAATAAA 1 chr3R:21516337-21516457 ( 64) CTAATAAA 1 chr2R:18155648-18155768 ( 61) ATAATAAA 1 chr3R:6796782-6796902 ( 52) GCAGTAAA 1 chr3R:26248827-26248947 ( 54) CCCGTAAA 1 chr2R:9975412-9975532 ( 62) GCAGTAAA 1 chr3R:16871137-16871257 ( 40) ACCGTAAA 1 chr3R:30383332-30383452 ( 64) GACATAAA 1 chr2L:16498766-16498886 ( 26) GACATAAA 1 chr3L:2385482-2385602 ( 72) CTCGTAAA 1 chr3R:10625802-10625922 ( 2) ATCGTAAA 1 chr3L:20629829-20629949 ( 15) ATCGTAAA 1 chr3R:19338995-19339115 ( 56) ATCGTAAA 1 chrX:9690687-9690807 ( 6) ATCGTAAA 1 chr3L:4017419-4017539 ( 93) ATCGTAAA 1 chr3L:22402281-22402401 ( 18) ACAGTAAA 1 chr2L:20774359-20774479 ( 22) CACATAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCATAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.13378 E= 4.0e-088 -47 -28 140 -1359 -347 125 -1359 65 -10 166 -1359 -1359 169 -1359 -83 -1359 -1359 -1359 -1359 192 189 -1359 -1359 -1359 189 -1359 -1359 -1359 189 -1359 -1359 -1359 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCATAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 123 E= 4.0e-088 0.195122 0.195122 0.609756 0.000000 0.024390 0.560976 0.000000 0.414634 0.252033 0.747967 0.000000 0.000000 0.869919 0.000000 0.130081 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCATAAA MEME-2 regular expression -------------------------------------------------------------------------------- G[CT][CA]ATAAA -------------------------------------------------------------------------------- Time 13.33 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAATGCA MEME-3 width = 8 sites = 23 llr = 206 E-value = 7.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAATGCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A aa79::3a pos.-specific C ::1:::7: probability G :::::a:: matrix T ::21a::: bits 2.1 * 1.9 ** ** * 1.7 ** ** * 1.5 ** ** * Relative 1.3 ** ***** Entropy 1.1 ** ***** (12.9 bits) 0.8 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAATGCA consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATGCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:8858466-8858586 95 2.06e-05 AAGTGCAATG AAAATGCA ATGAGTCAAC chrX:377539-377659 29 2.06e-05 TCGGAATTTG AAAATGCA ACATAATTGC chr2L:5601170-5601290 4 2.06e-05 ATG AAAATGCA GTAAAGTGGA chrX:20685398-20685518 5 2.06e-05 GAAA AAAATGCA AATTATTACG chr3L:14783943-14784063 40 2.06e-05 TACATAGATC AAAATGCA ACCGACCAAC chr3R:26792769-26792889 39 2.06e-05 GCGGAGGGCA AAAATGCA TTTAAAAATT chr2R:17773117-17773237 24 2.06e-05 CAGGCCATTT AAAATGCA CAAGGATTGC chr3L:16535118-16535238 30 4.06e-05 TTGTGGCCAG AATATGCA AGAAATATTG chr3R:20596729-20596849 32 4.06e-05 ATTTGATGAG AATATGCA AGCAAAGCAA chr3R:14483921-14484041 57 4.06e-05 CAAACGGTGC AATATGCA GATTTTGTGG chr2R:22155577-22155697 42 4.06e-05 CATGAGTGCA AATATGCA TACACATACC chr3R:26887296-26887416 71 6.41e-05 AAAGTCAGGG AAAATGAA ACGGTTTCTT chr2R:9983992-9984112 71 6.41e-05 CTGATTCTAA AAAATGAA ATCATTTTTT chr2L:12087614-12087734 67 6.41e-05 GGCCAGCGGG AAAATGAA GACACATCCG chrX:20652165-20652285 63 6.41e-05 CTGAAAATAT AAAATGAA ACCGAAACCG chr2L:20772988-20773108 30 6.41e-05 CAAGAAGGGG AAAATGAA GACGACGATA chr2R:11957547-11957667 6 8.21e-05 CTTCA AACATGCA CACCATGGCA chr3R:23463780-23463900 111 8.21e-05 CCGTCATATA AACATGCA TA chr2R:19840142-19840262 80 8.21e-05 TCGCATTGCC AACATGCA TCGGCATCTA chr3R:10625802-10625922 88 1.02e-04 GCGGGCACTT AAATTGCA TATAAAAGTG chrX:20736194-20736314 23 1.02e-04 AATTCGCGCG AAATTGCA TCTTTTATGG chr4:631791-631911 83 1.02e-04 GGTGTATTCA AAATTGCA CCCATATTTA chr3L:18588516-18588636 63 1.25e-04 ATAACGAAAA AATATGAA ATTCCCTAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATGCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:8858466-8858586 2.1e-05 94_[+3]_18 chrX:377539-377659 2.1e-05 28_[+3]_84 chr2L:5601170-5601290 2.1e-05 3_[+3]_109 chrX:20685398-20685518 2.1e-05 4_[+3]_108 chr3L:14783943-14784063 2.1e-05 39_[+3]_73 chr3R:26792769-26792889 2.1e-05 38_[+3]_74 chr2R:17773117-17773237 2.1e-05 23_[+3]_89 chr3L:16535118-16535238 4.1e-05 29_[+3]_83 chr3R:20596729-20596849 4.1e-05 31_[+3]_81 chr3R:14483921-14484041 4.1e-05 56_[+3]_56 chr2R:22155577-22155697 4.1e-05 41_[+3]_71 chr3R:26887296-26887416 6.4e-05 70_[+3]_42 chr2R:9983992-9984112 6.4e-05 70_[+3]_42 chr2L:12087614-12087734 6.4e-05 66_[+3]_46 chrX:20652165-20652285 6.4e-05 62_[+3]_50 chr2L:20772988-20773108 6.4e-05 29_[+3]_83 chr2R:11957547-11957667 8.2e-05 5_[+3]_107 chr3R:23463780-23463900 8.2e-05 110_[+3]_2 chr2R:19840142-19840262 8.2e-05 79_[+3]_33 chr3R:10625802-10625922 0.0001 87_[+3]_25 chrX:20736194-20736314 0.0001 22_[+3]_90 chr4:631791-631911 0.0001 82_[+3]_30 chr3L:18588516-18588636 0.00013 62_[+3]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATGCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAATGCA width=8 seqs=23 chr3R:8858466-8858586 ( 95) AAAATGCA 1 chrX:377539-377659 ( 29) AAAATGCA 1 chr2L:5601170-5601290 ( 4) AAAATGCA 1 chrX:20685398-20685518 ( 5) AAAATGCA 1 chr3L:14783943-14784063 ( 40) AAAATGCA 1 chr3R:26792769-26792889 ( 39) AAAATGCA 1 chr2R:17773117-17773237 ( 24) AAAATGCA 1 chr3L:16535118-16535238 ( 30) AATATGCA 1 chr3R:20596729-20596849 ( 32) AATATGCA 1 chr3R:14483921-14484041 ( 57) AATATGCA 1 chr2R:22155577-22155697 ( 42) AATATGCA 1 chr3R:26887296-26887416 ( 71) AAAATGAA 1 chr2R:9983992-9984112 ( 71) AAAATGAA 1 chr2L:12087614-12087734 ( 67) AAAATGAA 1 chrX:20652165-20652285 ( 63) AAAATGAA 1 chr2L:20772988-20773108 ( 30) AAAATGAA 1 chr2R:11957547-11957667 ( 6) AACATGCA 1 chr3R:23463780-23463900 ( 111) AACATGCA 1 chr2R:19840142-19840262 ( 80) AACATGCA 1 chr3R:10625802-10625922 ( 88) AAATTGCA 1 chrX:20736194-20736314 ( 23) AAATTGCA 1 chr4:631791-631911 ( 83) AAATTGCA 1 chr3L:18588516-18588636 ( 63) AATATGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATGCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.86794 E= 7.6e+004 189 -1117 -1117 -1117 189 -1117 -1117 -1117 127 -86 -1117 -28 169 -1117 -1117 -101 -1117 -1117 -1117 192 -1117 -1117 211 -1117 -5 165 -1117 -1117 189 -1117 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATGCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 7.6e+004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.652174 0.130435 0.000000 0.217391 0.869565 0.000000 0.000000 0.130435 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.260870 0.739130 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATGCA MEME-3 regular expression -------------------------------------------------------------------------------- AA[AT]ATG[CA]A -------------------------------------------------------------------------------- Time 19.13 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGGCCG MEME-4 width = 8 sites = 2 llr = 23 E-value = 1.0e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGGCCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::a::aa: probability G aa:aa::a matrix T :::::::: bits 2.1 ******** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCGGCCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:18155648-18155768 29 8.65e-06 CTCCACAAGG GGCGGCCG CGAGCCAATC chr3L:4757592-4757712 17 8.65e-06 AAATTGCCCG GGCGGCCG CGAGGGCGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18155648-18155768 8.6e-06 28_[+4]_84 chr3L:4757592-4757712 8.6e-06 16_[+4]_96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGGCCG width=8 seqs=2 chr2R:18155648-18155768 ( 29) GGCGGCCG 1 chr3L:4757592-4757712 ( 17) GGCGGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.0e+005 -765 -765 211 -765 -765 -765 211 -765 -765 208 -765 -765 -765 -765 211 -765 -765 -765 211 -765 -765 208 -765 -765 -765 208 -765 -765 -765 -765 211 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.0e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCCG MEME-4 regular expression -------------------------------------------------------------------------------- GGCGGCCG -------------------------------------------------------------------------------- Time 24.87 secs. ******************************************************************************** ******************************************************************************** MOTIF GSCCAGCG MEME-5 width = 8 sites = 7 llr = 76 E-value = 4.3e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSCCAGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C :4aa::a: probability G a6:::a:a matrix T :::::::: bits 2.1 * ** *** 1.9 * ****** 1.7 * ****** 1.5 * ****** Relative 1.3 * ****** Entropy 1.1 ******** (15.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCCAGCG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCAGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:20736194-20736314 46 1.01e-05 TATGGCGCAT GGCCAGCG CTAGGGTTAC chr3L:17650137-17650257 3 1.01e-05 AG GGCCAGCG TTGCTCCGCT chr2L:12087614-12087734 57 1.01e-05 TCCACGAATC GGCCAGCG GGAAAATGAA chr3L:2193329-2193449 37 1.01e-05 CGCGAGGAAT GGCCAGCG ACGGTTTCGC chr2R:11800215-11800335 90 2.04e-05 TTTTTATTAT GCCCAGCG TCTGACTTTT chr3R:25615526-25615646 113 2.04e-05 CCAGACCAAC GCCCAGCG chr2L:7304456-7304576 86 2.04e-05 GACGAAACGG GCCCAGCG AGTCATGCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCAGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:20736194-20736314 1e-05 45_[+5]_67 chr3L:17650137-17650257 1e-05 2_[+5]_110 chr2L:12087614-12087734 1e-05 56_[+5]_56 chr3L:2193329-2193449 1e-05 36_[+5]_76 chr2R:11800215-11800335 2e-05 89_[+5]_23 chr3R:25615526-25615646 2e-05 112_[+5] chr2L:7304456-7304576 2e-05 85_[+5]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCAGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSCCAGCG width=8 seqs=7 chrX:20736194-20736314 ( 46) GGCCAGCG 1 chr3L:17650137-17650257 ( 3) GGCCAGCG 1 chr2L:12087614-12087734 ( 57) GGCCAGCG 1 chr3L:2193329-2193449 ( 37) GGCCAGCG 1 chr2R:11800215-11800335 ( 90) GCCCAGCG 1 chr3R:25615526-25615646 ( 113) GCCCAGCG 1 chr2L:7304456-7304576 ( 86) GCCCAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCAGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 4.3e+005 -945 -945 211 -945 -945 86 131 -945 -945 208 -945 -945 -945 208 -945 -945 189 -945 -945 -945 -945 -945 211 -945 -945 208 -945 -945 -945 -945 211 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCAGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.3e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCAGCG MEME-5 regular expression -------------------------------------------------------------------------------- G[GC]CCAGCG -------------------------------------------------------------------------------- Time 30.61 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20785472-20785592 2.61e-04 49_[+2(1.80e-05)]_2_[+1(1.63e-05)]_\ 53 chr3R:16902134-16902254 4.37e-02 120 chr3L:4017419-4017539 4.41e-04 62_[+1(3.53e-05)]_50 chr3L:11931314-11931434 1.22e-04 37_[+2(1.80e-05)]_18_[+1(1.63e-05)]_\ 49 chr2L:7305652-7305772 3.38e-01 120 chr2R:11043840-11043960 1.85e-02 120 chr2L:19703177-19703297 1.96e-01 35_[+1(5.38e-05)]_77 chr3L:8664519-8664639 3.73e-02 120 chr2R:15755100-15755220 2.58e-03 60_[+2(3.80e-05)]_52 chr2L:12632865-12632985 1.51e-01 120 chr3R:7033814-7033934 5.97e-02 46_[+2(1.80e-05)]_66 chr2L:1066756-1066876 8.60e-03 32_[+1(5.38e-05)]_21_[+1(7.55e-05)]_\ 51 chr2L:20772988-20773108 2.06e-02 29_[+3(6.41e-05)]_46_[+2(7.70e-05)]_\ 29 chr2L:21778206-21778326 5.10e-02 46_[+5(4.37e-05)]_66 chr2R:23181375-23181495 2.05e-03 90_[+1(1.63e-05)]_2_[+2(3.80e-05)]_\ 12 chr2R:17773117-17773237 4.54e-03 23_[+3(2.06e-05)]_48_[+1(3.53e-05)]_\ 33 chr2R:11794870-11794990 1.78e-03 47_[+2(1.80e-05)]_4_[+1(5.38e-05)]_\ 12_[+2(3.80e-05)]_33 chrX:9690687-9690807 1.63e-03 27_[+1(1.63e-05)]_85 chr2R:11455494-11455614 6.47e-02 34_[+1(5.38e-05)]_78 chr2R:14815238-14815358 6.20e-02 120 chr3R:6965162-6965282 2.62e-02 53_[+2(1.80e-05)]_59 chrX:2430856-2430976 1.32e-01 72_[+2(1.80e-05)]_40 chr3R:22967746-22967866 6.19e-04 24_[+1(5.38e-05)]_24_[+2(7.70e-05)]_\ 5_[+1(7.55e-05)]_43 chr3R:19338995-19339115 6.73e-02 120 chr3R:31306003-31306123 7.68e-03 66_[+2(7.70e-05)]_2_[+1(1.63e-05)]_\ 36 chr2R:13240372-13240492 2.68e-02 56_[+1(1.63e-05)]_56 chr2L:7304456-7304576 1.60e-03 16_[+2(7.70e-05)]_61_[+5(2.04e-05)]_\ 27 chr2R:22155577-22155697 3.15e-03 19_[+2(1.80e-05)]_14_[+3(4.06e-05)]_\ 71 chr3R:18079117-18079237 1.03e-01 69_[+1(1.63e-05)]_43 chr3L:401561-401681 1.46e-03 57_[+2(1.80e-05)]_25_[+2(1.80e-05)]_\ 22 chr2R:8604325-8604445 1.09e-03 6_[+2(1.80e-05)]_98_[+1(5.38e-05)] chr2L:19043943-19044063 5.37e-02 49_[+2(9.80e-05)]_63 chr3L:17765542-17765662 4.00e-01 120 chr2L:10551867-10551987 6.24e-02 46_[+1(1.63e-05)]_35_[+1(5.38e-05)]_\ 23 chr3R:25615526-25615646 8.35e-05 45_[+2(7.70e-05)]_2_[+1(5.38e-05)]_\ 49_[+5(2.04e-05)] chr3R:21516337-21516457 6.61e-03 36_[+1(1.63e-05)]_76 chr3R:18074172-18074292 3.41e-02 120 chrX:1230506-1230626 1.51e-02 20_[+1(3.53e-05)]_92 chr3L:8666836-8666956 4.64e-01 120 chr2L:8811886-8812006 1.15e-02 49_[+2(3.80e-05)]_63 chrX:3393901-3394021 3.78e-02 29_[+2(1.80e-05)]_83 chr2L:14446756-14446876 9.30e-04 43_[+1(1.63e-05)]_69 chr2R:19570273-19570393 2.44e-01 26_[+1(3.53e-05)]_86 chr3R:26792769-26792889 7.83e-04 38_[+3(2.06e-05)]_55_[+2(1.80e-05)]_\ 11 chr3L:18362554-18362674 1.67e-02 56_[+2(7.70e-05)]_56 chr2R:6199904-6200024 2.90e-01 120 chr2R:18123986-18124106 1.13e-01 120 chr3L:11238211-11238331 4.55e-02 107_[+1(5.38e-05)]_5 chr2L:9421461-9421581 8.03e-02 120 chr3R:17082252-17082372 4.19e-02 28_[+2(3.80e-05)]_84 chr3R:4640339-4640459 3.68e-02 82_[+2(7.70e-05)]_30 chr3L:15081184-15081304 1.21e-01 120 chr3L:2193329-2193449 1.88e-04 36_[+5(1.01e-05)]_15_[+2(1.80e-05)]_\ 12_[+2(9.80e-05)]_33 chr2L:21741564-21741684 4.04e-02 60_[+2(3.80e-05)]_52 chr3R:16793137-16793257 4.90e-02 120 chrX:11322393-11322513 2.01e-01 120 chrX:2438408-2438528 9.29e-02 120 chr3R:16914062-16914182 2.62e-03 120 chr3R:4529120-4529240 2.53e-01 120 chr2L:4684398-4684518 1.84e-01 88_[+1(7.55e-05)]_24 chr2L:11078496-11078616 2.10e-02 120 chr3L:6827834-6827954 2.12e-01 9_[+2(3.80e-05)]_103 chr3R:31411736-31411856 1.81e-02 120 chr3R:20662371-20662491 5.54e-02 26_[+1(5.38e-05)]_86 chr2L:14383966-14384086 3.59e-02 120 chr2L:16405958-16406078 5.87e-01 120 chr3R:30473666-30473786 6.64e-03 75_[+2(1.80e-05)]_37 chr2L:5599767-5599887 2.78e-03 66_[+2(1.80e-05)]_46 chrX:18891853-18891973 2.06e-02 56_[+2(1.80e-05)]_56 chr3L:21481922-21482042 4.04e-01 120 chr3R:6995273-6995393 2.46e-01 120 chr3R:21793150-21793270 1.57e-02 66_[+2(1.80e-05)]_46 chrX:973406-973526 5.58e-01 120 chr3L:266791-266911 2.87e-02 20_[+2(3.80e-05)]_92 chr2R:6576162-6576282 2.29e-02 51_[+1(5.38e-05)]_61 chr3L:788869-788989 1.03e-03 23_[+3(8.21e-05)]_7_[+2(7.70e-05)]_\ 74 chr3L:19162691-19162811 2.69e-02 28_[+1(3.53e-05)]_84 chrX:12205752-12205872 4.29e-02 28_[+2(1.80e-05)]_84 chr2R:13541000-13541120 3.63e-02 85_[+1(3.53e-05)]_27 chr2L:7138114-7138234 1.43e-03 58_[+1(1.63e-05)]_42_[+2(1.80e-05)]_\ 4 chr2L:1402357-1402477 1.72e-02 78_[+2(7.70e-05)]_4_[+2(7.70e-05)]_\ 22 chr3L:15715288-15715408 5.80e-02 120 chr3R:9745591-9745711 2.18e-01 14_[+1(5.38e-05)]_98 chr3L:18588516-18588636 5.93e-02 112_[+2(9.80e-05)] chr2L:11722694-11722814 6.80e-05 13_[+2(7.70e-05)]_30_[+1(1.63e-05)]_\ 61 chr3L:2385482-2385602 2.93e-01 120 chrX:10808601-10808721 4.58e-02 40_[+2(1.80e-05)]_72 chr3L:2197143-2197263 1.43e-01 120 chr2L:4280743-4280863 4.44e-02 73_[+1(1.63e-05)]_39 chr3L:4264046-4264166 4.96e-02 18_[+2(1.80e-05)]_12_[+2(1.80e-05)]_\ 74 chr3R:30667176-30667296 4.27e-02 120 chr2L:10101425-10101545 6.02e-03 71_[+1(3.53e-05)]_32_[+2(1.80e-05)]_\ 1 chr3L:747419-747539 2.68e-02 44_[+2(3.80e-05)]_68 chr3R:12112145-12112265 9.13e-03 16_[+2(1.80e-05)]_16_[+2(3.80e-05)]_\ 22_[+1(5.38e-05)]_42 chr3R:18559025-18559145 3.64e-02 57_[+1(5.38e-05)]_19_[+1(5.38e-05)]_\ 28 chr3R:12645430-12645550 1.65e-01 120 chrX:3422167-3422287 5.15e-02 33_[+1(5.38e-05)]_79 chr2L:8167555-8167675 2.73e-03 85_[+2(3.80e-05)]_16_[+1(1.63e-05)]_\ 3 chr3R:16752396-16752516 2.95e-03 3_[+2(1.80e-05)]_109 chr3L:20564822-20564942 5.13e-01 120 chr2R:19840142-19840262 3.72e-02 79_[+3(8.21e-05)]_33 chr2L:3079749-3079869 2.28e-02 120 chr3L:18119299-18119419 8.89e-02 85_[+1(3.53e-05)]_27 chr3L:14783943-14784063 1.31e-02 39_[+3(2.06e-05)]_73 chr3L:17145864-17145984 3.88e-02 48_[+1(3.53e-05)]_64 chr3R:14504661-14504781 3.81e-04 3_[+1(1.63e-05)]_38_[+2(7.70e-05)]_\ 63 chr2L:21341816-21341936 2.07e-01 120 chrX:20652165-20652285 7.30e-02 62_[+3(6.41e-05)]_50 chrX:7047100-7047220 2.71e-01 120 chr3R:10859576-10859696 6.43e-01 120 chr2L:8294534-8294654 1.38e-01 120 chr2R:25116798-25116918 3.04e-02 91_[+1(7.55e-05)]_21 chr2L:20767596-20767716 9.46e-01 120 chr2L:15336684-15336804 9.48e-04 11_[+1(1.63e-05)]_101 chr3R:16730218-16730338 3.14e-02 2_[+2(1.80e-05)]_110 chr2R:17144787-17144907 2.93e-02 56_[+1(1.63e-05)]_56 chr2R:5937940-5938060 3.02e-02 120 chr2L:12087614-12087734 3.54e-06 12_[+2(1.80e-05)]_36_[+5(1.01e-05)]_\ 2_[+3(6.41e-05)]_46 chrX:17179686-17179806 5.25e-02 120 chr2L:3005646-3005766 4.61e-02 120 chr2R:11709491-11709611 1.70e-01 120 chr3R:13990870-13990990 1.37e-01 27_[+1(1.63e-05)]_85 chr3L:22375742-22375862 2.75e-03 69_[+1(1.63e-05)]_22_[+2(7.70e-05)]_\ 13 chr3R:23463780-23463900 7.53e-02 110_[+3(8.21e-05)]_2 chr3L:18318592-18318712 8.34e-02 14_[+1(1.63e-05)]_98 chr3R:16951513-16951633 2.31e-01 63_[+1(5.38e-05)]_49 chr3L:20629829-20629949 2.44e-02 120 chr3R:27226169-27226289 9.99e-01 120 chr2L:16498766-16498886 1.29e-02 14_[+1(5.38e-05)]_98 chrX:960906-961026 1.60e-01 70_[+1(3.53e-05)]_42 chrX:23023864-23023984 7.68e-03 44_[+1(1.63e-05)]_68 chr3R:30797946-30798066 5.26e-03 53_[+1(1.63e-05)]_59 chr3L:4401387-4401507 7.71e-01 120 chr3R:14483921-14484041 5.07e-02 56_[+3(4.06e-05)]_56 chr2R:11042688-11042808 1.16e-01 91_[+2(1.80e-05)]_21 chr2L:3968463-3968583 6.66e-04 41_[+1(1.63e-05)]_71 chr3R:16950034-16950154 4.21e-03 44_[+2(7.70e-05)]_20_[+1(5.38e-05)]_\ 40 chr2R:9973867-9973987 7.90e-01 120 chr3L:15223580-15223700 3.78e-01 120 chrX:14677922-14678042 2.69e-02 120 chrX:20663048-20663168 1.38e-01 120 chr2L:1421094-1421214 6.77e-01 120 chr3R:14570735-14570855 3.34e-02 120 chr2L:20775796-20775916 1.13e-01 120 chr3R:30383332-30383452 2.77e-02 120 chr2L:14551318-14551438 1.29e-01 120 chr3L:8662915-8663035 3.04e-03 47_[+1(1.63e-05)]_65 chr2L:12092014-12092134 8.80e-02 59_[+1(3.53e-05)]_53 chr2R:9975412-9975532 2.58e-02 120 chr4:631791-631911 2.45e-01 120 chr2L:16582869-16582989 2.65e-01 120 chr3R:30650113-30650233 3.41e-02 120 chr3R:30041059-30041179 1.64e-01 59_[+2(7.70e-05)]_53 chr2R:20962297-20962417 3.96e-01 120 chr3R:6744869-6744989 7.21e-01 120 chr3R:31527999-31528119 8.00e-04 42_[+2(1.80e-05)]_11_[+2(7.70e-05)]_\ 51 chr3R:11993831-11993951 5.20e-01 120 chr3R:30902959-30903079 1.48e-01 102_[+2(7.70e-05)]_10 chr2L:15314755-15314875 1.80e-03 35_[+2(7.70e-05)]_7_[+1(3.53e-05)]_\ 62 chr2R:8122101-8122221 8.71e-01 120 chr2L:12085126-12085246 3.75e-01 120 chrX:20677653-20677773 1.25e-02 52_[+1(1.63e-05)]_60 chrX:8211830-8211950 4.50e-01 120 chr3L:3560682-3560802 7.25e-01 120 chr3R:6907680-6907800 4.36e-01 120 chr2R:10844909-10845029 1.76e-01 120 chr3R:8307274-8307394 3.93e-01 120 chr2R:17751354-17751474 1.34e-01 120 chr2R:10859917-10860037 5.22e-01 120 chr3R:5266381-5266501 3.17e-03 120 chrX:19786241-19786361 6.00e-02 44_[+1(1.63e-05)]_68 chr2L:21910794-21910914 2.26e-01 53_[+1(3.53e-05)]_59 chr2R:11800215-11800335 1.30e-02 89_[+5(2.04e-05)]_23 chr3L:12299033-12299153 6.57e-02 45_[+2(1.80e-05)]_67 chr2R:9983992-9984112 2.05e-02 70_[+3(6.41e-05)]_42 chr2R:13615324-13615444 2.17e-01 120 chr2L:20784805-20784925 1.82e-03 67_[+1(1.63e-05)]_45 chr3R:26248827-26248947 4.28e-01 120 chr3L:19157231-19157351 2.31e-03 54_[+1(1.63e-05)]_3_[+2(7.70e-05)]_\ 47 chrX:20685398-20685518 2.61e-03 4_[+3(2.06e-05)]_108 chr2L:5601170-5601290 1.46e-02 3_[+3(2.06e-05)]_109 chr2L:9988051-9988171 5.60e-01 120 chr3R:6421362-6421482 6.56e-02 60_[+2(3.80e-05)]_52 chr2L:6695120-6695240 1.24e-02 30_[+2(1.80e-05)]_82 chrX:20713458-20713578 2.49e-02 91_[+1(1.63e-05)]_21 chrX:377539-377659 8.75e-03 28_[+3(2.06e-05)]_24_[+2(9.80e-05)]_\ 52 chr3R:6796782-6796902 1.29e-04 75_[+1(3.53e-05)]_37 chrX:22833065-22833185 2.42e-01 120 chr3R:16811058-16811178 1.74e-01 2_[+1(1.63e-05)]_110 chr2R:19801456-19801576 2.50e-01 120 chr3R:21714311-21714431 5.82e-01 120 chr3L:17650137-17650257 5.14e-03 2_[+5(1.01e-05)]_92_[+2(7.70e-05)]_\ 10 chr2L:17316201-17316321 1.05e-02 40_[+2(3.80e-05)]_8_[+1(5.38e-05)]_\ 56 chr2L:12616771-12616891 9.95e-01 120 chr2L:14423515-14423635 7.53e-04 120 chr3R:16685148-16685268 1.02e-01 62_[+1(3.53e-05)]_50 chr2R:11957547-11957667 1.18e-02 5_[+3(8.21e-05)]_17_[+1(1.63e-05)]_\ 82 chr3L:4757592-4757712 6.74e-04 16_[+4(8.65e-06)]_96 chr4:245262-245382 7.80e-01 120 chrX:20736194-20736314 1.65e-05 33_[+1(1.63e-05)]_4_[+5(1.01e-05)]_\ 67 chr3R:8282110-8282230 2.62e-03 34_[+2(3.80e-05)]_78 chr2L:21843524-21843644 2.03e-02 81_[+2(3.80e-05)]_31 chr3R:26887296-26887416 7.87e-03 70_[+3(6.41e-05)]_15_[+1(1.63e-05)]_\ 19 chr3L:13150663-13150783 2.59e-02 50_[+1(7.55e-05)]_4_[+1(1.63e-05)]_\ 50 chr3R:16871137-16871257 2.56e-02 120 chr2R:15739380-15739500 3.18e-01 120 chr3R:20596729-20596849 2.47e-02 31_[+3(4.06e-05)]_81 chr3R:23138580-23138700 3.42e-01 120 chr3R:8858466-8858586 4.24e-02 94_[+3(2.06e-05)]_18 chr3R:4854338-4854458 3.59e-02 71_[+1(3.53e-05)]_41 chr3R:10625802-10625922 3.27e-04 120 chrX:20691341-20691461 7.20e-03 60_[+1(1.63e-05)]_52 chr2R:25051199-25051319 4.42e-02 67_[+1(5.38e-05)]_45 chrX:8830970-8831090 5.78e-02 41_[+2(7.70e-05)]_71 chr3L:2816762-2816882 8.28e-02 59_[+1(5.38e-05)]_53 chr3L:22402281-22402401 2.99e-01 120 chr2R:23759272-23759392 6.81e-01 120 chrX:19785525-19785645 1.20e-01 15_[+2(3.80e-05)]_97 chr2L:11449099-11449219 7.01e-01 120 chr2L:5412680-5412800 1.43e-02 61_[+2(3.80e-05)]_51 chr2R:21727827-21727947 6.42e-02 120 chr3L:14231552-14231672 3.00e-01 120 chr2L:12900647-12900767 2.84e-02 92_[+2(3.80e-05)]_20 chr3R:21665563-21665683 7.24e-01 120 chr3L:5797388-5797508 9.66e-01 120 chr3L:6498819-6498939 4.22e-01 120 chrX:14960991-14961111 6.91e-01 120 chrX:15661630-15661750 3.61e-02 51_[+1(3.53e-05)]_61 chr2R:12209044-12209164 9.89e-01 120 chr2L:12814436-12814556 1.72e-01 18_[+1(3.53e-05)]_94 chr3L:8541800-8541920 6.90e-02 47_[+2(7.70e-05)]_65 chr3R:8675033-8675153 5.46e-01 120 chr2R:11400474-11400594 6.25e-01 120 chr2R:18155648-18155768 2.30e-03 28_[+4(8.65e-06)]_84 chr3R:28261094-28261214 5.73e-02 44_[+1(1.63e-05)]_68 chr3R:5028156-5028276 2.37e-03 17_[+2(9.80e-05)]_95 chr2L:20774359-20774479 2.21e-01 120 chr2R:13617605-13617725 1.27e-03 60_[+2(1.80e-05)]_52 chr2L:16302399-16302519 4.42e-02 72_[+2(3.80e-05)]_40 chr3R:16936214-16936334 1.06e-03 40_[+1(1.63e-05)]_72 chr2L:17382919-17383039 5.85e-01 120 chr3R:13988479-13988599 2.65e-03 65_[+1(5.38e-05)]_47 chr2R:9986071-9986191 8.91e-03 50_[+1(1.63e-05)]_62 chr2L:21853339-21853459 2.38e-02 120 chr2L:1426538-1426658 2.38e-01 120 chr2L:14233460-14233580 9.93e-01 120 chrX:7273013-7273133 2.37e-03 56_[+2(1.80e-05)]_56 chr3L:13079233-13079353 4.21e-01 120 chr3L:16535118-16535238 8.97e-03 29_[+3(4.06e-05)]_13_[+2(7.70e-05)]_\ 62 chr3L:12570675-12570795 1.19e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************