******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/btn.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:10265432-10265552 1.0000 120 chr3L:17993422-17993542 1.0000 120 chrX:2861116-2861236 1.0000 120 chr2R:21514538-21514658 1.0000 120 chr2L:13512933-13513053 1.0000 120 chr2L:14539995-14540115 1.0000 120 chrX:2166280-2166400 1.0000 120 chr2L:901465-901585 1.0000 120 chr2L:1362361-1362481 1.0000 120 chr2L:6795047-6795167 1.0000 120 chr3L:824560-824680 1.0000 120 chr3L:21130980-21131100 1.0000 120 chr2R:8327230-8327350 1.0000 120 chrX:9220557-9220677 1.0000 120 chr3R:30164218-30164338 1.0000 120 chr3L:1216554-1216674 1.0000 120 chrX:19494604-19494724 1.0000 120 chr3R:29062359-29062479 1.0000 120 chr2L:1723612-1723732 1.0000 120 chr2R:21910055-21910175 1.0000 120 chr2L:5044488-5044608 1.0000 120 chr2R:24941266-24941386 1.0000 120 chrX:13128116-13128236 1.0000 120 chrX:10115658-10115778 1.0000 120 chrX:18930354-18930474 1.0000 120 chr2L:11130971-11131091 1.0000 120 chrX:17021561-17021681 1.0000 120 chr3R:11312513-11312633 1.0000 120 chrX:13404016-13404136 1.0000 120 chr2R:18609042-18609162 1.0000 120 chr3R:7779735-7779855 1.0000 120 chr3R:8784914-8785034 1.0000 120 chr2L:4292667-4292787 1.0000 120 chr2L:10615171-10615291 1.0000 120 chr2L:7616914-7617034 1.0000 120 chr3R:23134874-23134994 1.0000 120 chr2R:7381776-7381896 1.0000 120 chrX:9251370-9251490 1.0000 120 chr2R:22197273-22197393 1.0000 120 chr3R:6869470-6869590 1.0000 120 chr2L:12822750-12822870 1.0000 120 chr3R:11372747-11372867 1.0000 120 chr3L:2894882-2895002 1.0000 120 chr3L:12037931-12038051 1.0000 120 chrX:1880271-1880391 1.0000 120 chrX:20644172-20644292 1.0000 120 chr3R:23922262-23922382 1.0000 120 chr3R:6351110-6351230 1.0000 120 chr2R:25076774-25076894 1.0000 120 chr2L:3372701-3372821 1.0000 120 chr2L:18505603-18505723 1.0000 120 chr2R:19874679-19874799 1.0000 120 chr3R:6973342-6973462 1.0000 120 chr3R:10150678-10150798 1.0000 120 chr3L:18114475-18114595 1.0000 120 chr3R:11869309-11869429 1.0000 120 chr2L:19200406-19200526 1.0000 120 chr3R:23803826-23803946 1.0000 120 chrX:3136842-3136962 1.0000 120 chr3R:10630112-10630232 1.0000 120 chr3R:6664508-6664628 1.0000 120 chr2L:14236417-14236537 1.0000 120 chr2R:18288771-18288891 1.0000 120 chrX:5564003-5564123 1.0000 120 chr3R:26536434-26536554 1.0000 120 chr2R:13261772-13261892 1.0000 120 chr3R:26539330-26539450 1.0000 120 chr2R:19275711-19275831 1.0000 120 chr3R:11777242-11777362 1.0000 120 chr2L:13838777-13838897 1.0000 120 chr3L:11492595-11492715 1.0000 120 chr2L:10276996-10277116 1.0000 120 chr3L:20276812-20276932 1.0000 120 chr2L:14021763-14021883 1.0000 120 chr3L:11408719-11408839 1.0000 120 chr2R:12458330-12458450 1.0000 120 chrX:16967559-16967679 1.0000 120 chr2R:14009151-14009271 1.0000 120 chr2L:7339765-7339885 1.0000 120 chr3R:14284448-14284568 1.0000 120 chr3R:10648889-10649009 1.0000 120 chr2L:14490959-14491079 1.0000 120 chrX:3367354-3367474 1.0000 120 chr2R:7063856-7063976 1.0000 120 chr3R:6723899-6724019 1.0000 120 chr3L:7634960-7635080 1.0000 120 chr3L:22136112-22136232 1.0000 120 chrX:6642988-6643108 1.0000 120 chr2R:11628149-11628269 1.0000 120 chr2L:19377355-19377475 1.0000 120 chrX:10600635-10600755 1.0000 120 chr2L:19576686-19576806 1.0000 120 chr3R:10628425-10628545 1.0000 120 chr3L:9762248-9762368 1.0000 120 chr2R:19413351-19413471 1.0000 120 chr2L:21237397-21237517 1.0000 120 chr2L:12351022-12351142 1.0000 120 chr3R:10203707-10203827 1.0000 120 chr2L:19192010-19192130 1.0000 120 chrX:17510585-17510705 1.0000 120 chr3L:6904177-6904297 1.0000 120 chr2L:117846-117966 1.0000 120 chr3R:20276143-20276263 1.0000 120 chr3R:9157910-9158030 1.0000 120 chrX:2156090-2156210 1.0000 120 chrX:18921063-18921183 1.0000 120 chr3R:29255483-29255603 1.0000 120 chr2L:14409429-14409549 1.0000 120 chr3L:3896784-3896904 1.0000 120 chr2R:11469624-11469744 1.0000 120 chrX:5285908-5286028 1.0000 120 chr2R:10238119-10238239 1.0000 120 chr3R:21493756-21493876 1.0000 120 chr2R:11738728-11738848 1.0000 120 chrX:19153452-19153572 1.0000 120 chr3L:15715900-15716020 1.0000 120 chr3R:14608993-14609113 1.0000 120 chrX:6110001-6110121 1.0000 120 chr2L:5093261-5093381 1.0000 120 chr3L:14780355-14780475 1.0000 120 chr2R:21134383-21134503 1.0000 120 chr2L:2494661-2494781 1.0000 120 chr2L:8083280-8083400 1.0000 120 chr2R:22383021-22383141 1.0000 120 chr3L:11540489-11540609 1.0000 120 chr3R:14017767-14017887 1.0000 120 chr2R:23868644-23868764 1.0000 120 chrX:6614439-6614559 1.0000 120 chr3L:6981824-6981944 1.0000 120 chrX:5517102-5517222 1.0000 120 chrX:9137342-9137462 1.0000 120 chr3R:26937621-26937741 1.0000 120 chr2R:13960701-13960821 1.0000 120 chr3L:2851086-2851206 1.0000 120 chrX:16644930-16645050 1.0000 120 chrX:8720254-8720374 1.0000 120 chr2L:18921434-18921554 1.0000 120 chr2R:7490633-7490753 1.0000 120 chr2L:3003543-3003663 1.0000 120 chrX:4530032-4530152 1.0000 120 chr3R:28845329-28845449 1.0000 120 chrX:10582167-10582287 1.0000 120 chr2L:5256599-5256719 1.0000 120 chr3R:22260338-22260458 1.0000 120 chr2R:11541268-11541388 1.0000 120 chr3R:21112536-21112656 1.0000 120 chr3L:15691360-15691480 1.0000 120 chr2L:20950777-20950897 1.0000 120 chrX:5639233-5639353 1.0000 120 chr3L:16806208-16806328 1.0000 120 chr2R:18662406-18662526 1.0000 120 chr2R:9406872-9406992 1.0000 120 chr3L:2152100-2152220 1.0000 120 chr2R:24402597-24402717 1.0000 120 chr3L:12062943-12063063 1.0000 120 chr3R:25515497-25515617 1.0000 120 chr3R:9047782-9047902 1.0000 120 chr3R:10100683-10100803 1.0000 120 chr2L:15746728-15746848 1.0000 120 chr3R:24206869-24206989 1.0000 120 chr3R:26005951-26006071 1.0000 120 chr3R:30413928-30414048 1.0000 120 chr2L:18881378-18881498 1.0000 120 chr3R:29591612-29591732 1.0000 120 chr3R:22133854-22133974 1.0000 120 chr3L:21509579-21509699 1.0000 120 chr3L:13918037-13918157 1.0000 120 chr2R:15835495-15835615 1.0000 120 chrX:3811623-3811743 1.0000 120 chr3L:628421-628541 1.0000 120 chr3L:3305573-3305693 1.0000 120 chr2L:7313660-7313780 1.0000 120 chr2R:13991290-13991410 1.0000 120 chrX:10775854-10775974 1.0000 120 chr3R:23942903-23943023 1.0000 120 chr3L:3300455-3300575 1.0000 120 chr2L:4838619-4838739 1.0000 120 chr2R:20126190-20126310 1.0000 120 chr2R:20106599-20106719 1.0000 120 chr2L:11206916-11207036 1.0000 120 chrX:16782189-16782309 1.0000 120 chr3L:11403695-11403815 1.0000 120 chr2L:19190312-19190432 1.0000 120 chr3R:28631971-28632091 1.0000 120 chr2R:24943223-24943343 1.0000 120 chr2L:6700812-6700932 1.0000 120 chr3R:13683669-13683789 1.0000 120 chr3R:5856350-5856470 1.0000 120 chr3L:8395801-8395921 1.0000 120 chr2L:3566718-3566838 1.0000 120 chr3L:613752-613872 1.0000 120 chr2R:10559579-10559699 1.0000 120 chr2L:13215940-13216060 1.0000 120 chr3L:10845216-10845336 1.0000 120 chr2L:7632914-7633034 1.0000 120 chr2R:21571369-21571489 1.0000 120 chr2L:3533231-3533351 1.0000 120 chr3R:16748676-16748796 1.0000 120 chr3R:17943502-17943622 1.0000 120 chr2R:21049351-21049471 1.0000 120 chr3L:15728290-15728410 1.0000 120 chr3R:27209115-27209235 1.0000 120 chr2L:11829347-11829467 1.0000 120 chr2L:3861543-3861663 1.0000 120 chr2R:21379260-21379380 1.0000 120 chr2R:19357499-19357619 1.0000 120 chr3R:8886910-8887030 1.0000 120 chr3L:1376108-1376228 1.0000 120 chr3L:13189363-13189483 1.0000 120 chr3R:26654699-26654819 1.0000 120 chr2L:523639-523759 1.0000 120 chr3R:27138093-27138213 1.0000 120 chr3R:6667449-6667569 1.0000 120 chrX:11548888-11549008 1.0000 120 chr3R:21270023-21270143 1.0000 120 chrX:20519194-20519314 1.0000 120 chr3L:5974737-5974857 1.0000 120 chr3L:16803831-16803951 1.0000 120 chr3R:14008973-14009093 1.0000 120 chr3L:4607862-4607982 1.0000 120 chr2L:18666041-18666161 1.0000 120 chr3R:20285812-20285932 1.0000 120 chr2L:16534166-16534286 1.0000 120 chr3L:3090776-3090896 1.0000 120 chr2L:20945431-20945551 1.0000 120 chr3L:7090939-7091059 1.0000 120 chr2L:8834914-8835034 1.0000 120 chr3R:13999673-13999793 1.0000 120 chrX:11807569-11807689 1.0000 120 chrX:18923570-18923690 1.0000 120 chr3L:19000594-19000714 1.0000 120 chr3L:2586397-2586517 1.0000 120 chr2L:2203207-2203327 1.0000 120 chr3L:2820993-2821113 1.0000 120 chrX:1907776-1907896 1.0000 120 chr3R:9055269-9055389 1.0000 120 chr3L:8549389-8549509 1.0000 120 chr3L:642849-642969 1.0000 120 chr3R:21350122-21350242 1.0000 120 chr2R:11601021-11601141 1.0000 120 chr3L:11483278-11483398 1.0000 120 chr3R:4319618-4319738 1.0000 120 chrX:4010981-4011101 1.0000 120 chr2R:6630626-6630746 1.0000 120 chr2R:9426406-9426526 1.0000 120 chr3R:9605180-9605300 1.0000 120 chr3R:20989814-20989934 1.0000 120 chr2L:16486477-16486597 1.0000 120 chr3R:23176541-23176661 1.0000 120 chr2R:11635963-11636083 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_btn/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/btn.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.29 C 0.206 G 0.218 T 0.286 Background letter frequencies (from file dataset with add-one prior applied): A 0.29 C 0.206 G 0.218 T 0.286 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF KGCAAACA MEME-1 width = 8 sites = 31 llr = 281 E-value = 7.5e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGCAAACA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::aaa:a pos.-specific C ::8:::7: probability G 6a:::::: matrix T 4:2:::3: bits 2.3 * 2.1 * 1.8 * *** * 1.6 * *** * Relative 1.4 ***** * Entropy 1.1 ******** (13.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCAAACA consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCAAACA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3305573-3305693 8 1.43e-05 ATTTTGT GGCAAACA AATTAAAGCA chr2R:11541268-11541388 15 1.43e-05 CTTGCAAACT GGCAAACA AATCAAGAAC chrX:6614439-6614559 77 1.43e-05 GTAAACACAC GGCAAACA ACTTCATTTG chr3L:14780355-14780475 89 1.43e-05 GTTTTGCTTA GGCAAACA GCAACTGCGT chr2R:10238119-10238239 84 1.43e-05 AGACTTCTAC GGcaaaca cacacacatg chr2R:19413351-19413471 96 1.43e-05 CTCCGAAACC GGCAAACA AAAAACATAC chr2R:18288771-18288891 109 1.43e-05 GAGAGACGAA GGCAAACA AAAC chr3R:6664508-6664628 33 1.43e-05 CCCGCTCGCG GGCAAACA AACTAAGCAA chr2R:18609042-18609162 68 1.43e-05 TTGTTGAAGA GGCAAACA AACACGGTGA chr3R:21270023-21270143 81 3.30e-05 TCGTCAGTGT TGCAAACA GTTCGCGCAG chr3L:13189363-13189483 94 3.30e-05 TGTGTTTAGC TGCAAACA TATTGTATAA chr3R:27209115-27209235 59 3.30e-05 AGCCACAAAT TGCAAACA AAAACAAAGG chrX:16782189-16782309 15 3.30e-05 ATGTCGGAGG TGCAAACA CAGCTGCGAC chr2L:2494661-2494781 53 3.30e-05 TGCGCCCTTG TGCAAACA CACGGAAAAC chr2L:13838777-13838897 42 3.30e-05 GCGGTGTTTA TGCAAACA CAAAGGCGTG chrX:19494604-19494724 49 3.30e-05 CCCATGAATC TGCAAACA GACAGCAGAC chrX:2156090-2156210 80 5.28e-05 TGGGGTACTC GGCAAATA GTTAGGAGTT chr2L:19576686-19576806 30 5.28e-05 CGCTACAATT GGCAAATA AAACAATAGC chr3R:26539330-26539450 86 5.28e-05 TGTGGGCGAA GGCAAATA GATAGCTCGC chr2R:6630626-6630746 113 9.86e-05 TAATGGGGCA GGTAAACA chr3L:642849-642969 41 9.86e-05 GGCCTGCTTG GGTAAACA GCATTCCAAG chrX:11807569-11807689 50 9.86e-05 GTTTGTCTGA TGCAAATA TGCGTTCCCC chrX:10775854-10775974 78 9.86e-05 CACATGGCTA TGCAAATA CGTGTGTGTT chr2R:9406872-9406992 32 9.86e-05 TTGGGTGGAA GGTAAACA ACAACAATGA chr2L:20950777-20950897 85 9.86e-05 ATGCTAAGGC TGCAAATA CTCTATCAAA chrX:10600635-10600755 46 9.86e-05 CACAGTGAAT TGCAAATA GCTTCTAAGT chrX:9251370-9251490 93 9.86e-05 AACCAAGAAA TGCAAATA CAGCTGTTTT chr2L:11130971-11131091 30 9.86e-05 ccgccgccAC TGCAAATA ACAAACGATT chr3L:21130980-21131100 4 9.86e-05 AGA GGTAAACA AACGAGGAAA chr3L:17993422-17993542 45 9.86e-05 CGGCACGCCA GGTAAACA AGAGAGAAAA chrX:10115658-10115778 62 1.52e-04 TTGATCATTG GGTAAATA TCAACAAGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCAAACA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3305573-3305693 1.4e-05 7_[+1]_105 chr2R:11541268-11541388 1.4e-05 14_[+1]_98 chrX:6614439-6614559 1.4e-05 76_[+1]_36 chr3L:14780355-14780475 1.4e-05 88_[+1]_24 chr2R:10238119-10238239 1.4e-05 83_[+1]_29 chr2R:19413351-19413471 1.4e-05 95_[+1]_17 chr2R:18288771-18288891 1.4e-05 108_[+1]_4 chr3R:6664508-6664628 1.4e-05 32_[+1]_80 chr2R:18609042-18609162 1.4e-05 67_[+1]_45 chr3R:21270023-21270143 3.3e-05 80_[+1]_32 chr3L:13189363-13189483 3.3e-05 93_[+1]_19 chr3R:27209115-27209235 3.3e-05 58_[+1]_54 chrX:16782189-16782309 3.3e-05 14_[+1]_98 chr2L:2494661-2494781 3.3e-05 52_[+1]_60 chr2L:13838777-13838897 3.3e-05 41_[+1]_71 chrX:19494604-19494724 3.3e-05 48_[+1]_64 chrX:2156090-2156210 5.3e-05 79_[+1]_33 chr2L:19576686-19576806 5.3e-05 29_[+1]_83 chr3R:26539330-26539450 5.3e-05 85_[+1]_27 chr2R:6630626-6630746 9.9e-05 112_[+1] chr3L:642849-642969 9.9e-05 40_[+1]_72 chrX:11807569-11807689 9.9e-05 49_[+1]_63 chrX:10775854-10775974 9.9e-05 77_[+1]_35 chr2R:9406872-9406992 9.9e-05 31_[+1]_81 chr2L:20950777-20950897 9.9e-05 84_[+1]_28 chrX:10600635-10600755 9.9e-05 45_[+1]_67 chrX:9251370-9251490 9.9e-05 92_[+1]_20 chr2L:11130971-11131091 9.9e-05 29_[+1]_83 chr3L:21130980-21131100 9.9e-05 3_[+1]_109 chr3L:17993422-17993542 9.9e-05 44_[+1]_68 chrX:10115658-10115778 0.00015 61_[+1]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCAAACA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGCAAACA width=8 seqs=31 chr3L:3305573-3305693 ( 8) GGCAAACA 1 chr2R:11541268-11541388 ( 15) GGCAAACA 1 chrX:6614439-6614559 ( 77) GGCAAACA 1 chr3L:14780355-14780475 ( 89) GGCAAACA 1 chr2R:10238119-10238239 ( 84) GGCAAACA 1 chr2R:19413351-19413471 ( 96) GGCAAACA 1 chr2R:18288771-18288891 ( 109) GGCAAACA 1 chr3R:6664508-6664628 ( 33) GGCAAACA 1 chr2R:18609042-18609162 ( 68) GGCAAACA 1 chr3R:21270023-21270143 ( 81) TGCAAACA 1 chr3L:13189363-13189483 ( 94) TGCAAACA 1 chr3R:27209115-27209235 ( 59) TGCAAACA 1 chrX:16782189-16782309 ( 15) TGCAAACA 1 chr2L:2494661-2494781 ( 53) TGCAAACA 1 chr2L:13838777-13838897 ( 42) TGCAAACA 1 chrX:19494604-19494724 ( 49) TGCAAACA 1 chrX:2156090-2156210 ( 80) GGCAAATA 1 chr2L:19576686-19576806 ( 30) GGCAAATA 1 chr3R:26539330-26539450 ( 86) GGCAAATA 1 chr2R:6630626-6630746 ( 113) GGTAAACA 1 chr3L:642849-642969 ( 41) GGTAAACA 1 chrX:11807569-11807689 ( 50) TGCAAATA 1 chrX:10775854-10775974 ( 78) TGCAAATA 1 chr2R:9406872-9406992 ( 32) GGTAAACA 1 chr2L:20950777-20950897 ( 85) TGCAAATA 1 chrX:10600635-10600755 ( 46) TGCAAATA 1 chrX:9251370-9251490 ( 93) TGCAAATA 1 chr2L:11130971-11131091 ( 30) TGCAAATA 1 chr3L:21130980-21131100 ( 4) GGTAAACA 1 chr3L:17993422-17993542 ( 45) GGTAAACA 1 chrX:10115658-10115778 ( 62) GGTAAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCAAACA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5371 E= 7.5e-003 -1160 -1160 141 55 -1160 -1160 220 -1160 -1160 197 -1160 -56 178 -1160 -1160 -1160 178 -1160 -1160 -1160 178 -1160 -1160 -1160 -1160 172 -1160 17 178 -1160 -1160 -1160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCAAACA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 7.5e-003 0.000000 0.000000 0.580645 0.419355 0.000000 0.000000 1.000000 0.000000 0.000000 0.806452 0.000000 0.193548 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.677419 0.000000 0.322581 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCAAACA MEME-1 regular expression -------------------------------------------------------------------------------- [GT]GCAAA[CT]A -------------------------------------------------------------------------------- Time 8.34 secs. ******************************************************************************** ******************************************************************************** MOTIF BYGCTGSC MEME-2 width = 8 sites = 52 llr = 406 E-value = 1.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif BYGCTGSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:::::: pos.-specific C 35:a333a probability G 31a::77: matrix T 43::7::: bits 2.3 ** * 2.1 ** * 1.8 ** * 1.6 ** * Relative 1.4 ** *** Entropy 1.1 ****** (11.3 bits) 0.9 ****** 0.7 ****** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel TCGCTGGC consensus CT CCC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGCTGSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21571369-21571489 92 1.27e-05 CTGATTTAGC TCGCTGGC TGATGGATGG chrX:6110001-6110121 75 1.27e-05 ACTGCTTGCT TCGCTGGC TTCAGCCAGC chr2L:5256599-5256719 33 1.84e-05 ACGCTTTACA GCGCTGGC AAATGTTTGA chr2L:1723612-1723732 53 1.84e-05 GTGTTTCCCT GCGCTGGC CGCATTTCTT chr3R:9047782-9047902 104 3.96e-05 AGCAAAACGC TCGCTGCC CTGATAACA chr2L:18921434-18921554 109 3.96e-05 GTATATAAAT CCGCTGCC CTTA chrX:19153452-19153572 36 3.96e-05 acgatcgttg ccgccggc gaaggagaag chr3R:11777242-11777362 59 3.96e-05 GACGCCGGCG TCGCTGCC CGCAGCGGGC chr3R:26539330-26539450 100 3.96e-05 AATAGATAGC TCGCTGCC TGCAGTTGCA chr2L:16486477-16486597 85 7.88e-05 GTTTGCGCTC TCGCTCGC CCCCATGGGC chr3R:14008973-14009093 4 7.88e-05 TTA TTGCTGGC AATGCACTGG chr3R:23942903-23943023 61 7.88e-05 TGGCCAGCTC CTGCTGGC GGCGGGCGCC chrX:3811623-3811743 67 7.88e-05 ACGTACCGAT TTGCTGGC GGTTTGTTTT chr3L:6904177-6904297 49 7.88e-05 CTTCCAGGCA CCGCTCGC CGCGTCTGCG chr2L:21237397-21237517 110 7.88e-05 GCGGGTCGTC TCGCTCGC ACC chr2R:14009151-14009271 4 7.88e-05 CAA CCGCTCGC CGTGTGCCAA chr3R:6664508-6664628 24 7.88e-05 TTTGAATTTC CCGCTCGC GGGCAAACAA chrX:13128116-13128236 71 7.88e-05 agtgcactgc ttgctggc cagtgcagtg chr2R:8327230-8327350 81 7.88e-05 GGTCGCTTTC TCGCTCGC ACCCGCTGAG chr2R:9426406-9426526 77 9.19e-05 CCACGCAAAA GCGCTCGC AGCTTTTAGG chr2R:25076774-25076894 13 9.19e-05 CAGTGGTAGA GCGCTCGC TTCGCATGTG chr2R:11628149-11628269 69 1.01e-04 GTAACGAAAA CCGCCGCC AGGGGCGCTG chr2L:12822750-12822870 110 1.01e-04 TGCCACTCGG CCGCCGCC GAA chr2L:11130971-11131091 20 1.01e-04 gccgccgccg ccgccgcc ACTGCAAATA chr2L:11829347-11829467 113 1.18e-04 TGGTCACGAT CGGCTGGC chr3R:26005951-26006071 77 1.18e-04 TTGAATGAGT CGGCTGGC TCTGGGATCG chr3R:11869309-11869429 31 1.18e-04 GACCGCCAAG CGGCTGGC TAGTGGTTTC chr3L:8395801-8395921 112 1.73e-04 TTGTCTCATG TTGCCGGC T chrX:5517102-5517222 64 1.73e-04 tctctctctT TCGCCCGC TGCTTCTCTC chr3L:11540489-11540609 101 1.73e-04 ACAAAGCCCA TTGCTGCC GAGAATCGGT chr3R:23803826-23803946 109 1.73e-04 GGCCATGACA TTGCTGCC TTGA chr2L:10615171-10615291 96 1.73e-04 TCAGTCCGTG CTGCTGCC CGCTAGGGGG chr3R:29062359-29062479 79 1.73e-04 TGCGGAGGAG CTGCTGCC ACTGGAGGAG chr2L:1362361-1362481 90 1.73e-04 GTTGAGCGCT TTGCCGGC GTTGCTCGAT chr3L:14780355-14780475 52 1.95e-04 ATCACGTTAC GTGCTGCC CTCTTAATTA chr2R:19413351-19413471 79 1.95e-04 TGGTTAAAGT GTGCCGGC TCCGAAACCG chr3R:11372747-11372867 20 1.95e-04 AGTCATCGCA GCGCCCGC AGTAGTCGGC chrX:19494604-19494724 5 1.95e-04 ACTT GCGCTCCC CAATCCTTGC chr2L:13512933-13513053 71 1.95e-04 GTTGCTGGGT GCGCCCGC TGCTGCTGCT chr3L:15715900-15716020 23 2.60e-04 CCTTGGCTCC GTGCTCGC CTTGTTTGCC chr3R:14284448-14284568 18 2.60e-04 AAATTCAACT CAGCTGGC AGCTGCAGCC chr3L:2894882-2895002 57 2.60e-04 CGTCGGCCAT CAGCTGGC CGCAAACTCA chr2L:7616914-7617034 13 2.60e-04 AGTGTGTGCT TAGCTGGC TGCAGTACAC chr3L:3896784-3896904 67 2.98e-04 CACTGAAACC GGGCTGCC AGGCTACCGA chr2R:24941266-24941386 93 2.98e-04 GCCGTTGCCA GAGCTGGC CAGGATTGAG chr3R:16748676-16748796 74 3.07e-04 ATGCAACTCA GTGCCGCC ATCTGACGTA chr3L:9762248-9762368 41 3.20e-04 GCTTCCACTT TGGCTCGC AATTATCGTA chrX:16967559-16967679 19 4.05e-04 GCGGTCTAGT GTGCCCGC CTGGCGCTTG chr2L:4292667-4292787 9 4.05e-04 AAATAAAA TGGCCGCC GTGCGAGGAG chr2L:5044488-5044608 9 4.05e-04 GCGAGCAT TAGCTGCC TCACGGTTTC chr3R:27209115-27209235 112 4.60e-04 CAACCATTTC TGGCCCGC T chr3L:16803831-16803951 10 5.06e-04 CAACTCCGG TAGCCGCC GACGCTATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGCTGSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21571369-21571489 1.3e-05 91_[+2]_21 chrX:6110001-6110121 1.3e-05 74_[+2]_38 chr2L:5256599-5256719 1.8e-05 32_[+2]_80 chr2L:1723612-1723732 1.8e-05 52_[+2]_60 chr3R:9047782-9047902 4e-05 103_[+2]_9 chr2L:18921434-18921554 4e-05 108_[+2]_4 chrX:19153452-19153572 4e-05 35_[+2]_77 chr3R:11777242-11777362 4e-05 58_[+2]_54 chr3R:26539330-26539450 4e-05 99_[+2]_13 chr2L:16486477-16486597 7.9e-05 84_[+2]_28 chr3R:14008973-14009093 7.9e-05 3_[+2]_109 chr3R:23942903-23943023 7.9e-05 60_[+2]_52 chrX:3811623-3811743 7.9e-05 66_[+2]_46 chr3L:6904177-6904297 7.9e-05 48_[+2]_64 chr2L:21237397-21237517 7.9e-05 109_[+2]_3 chr2R:14009151-14009271 7.9e-05 3_[+2]_109 chr3R:6664508-6664628 7.9e-05 23_[+2]_89 chrX:13128116-13128236 7.9e-05 70_[+2]_42 chr2R:8327230-8327350 7.9e-05 80_[+2]_32 chr2R:9426406-9426526 9.2e-05 76_[+2]_36 chr2R:25076774-25076894 9.2e-05 12_[+2]_100 chr2R:11628149-11628269 0.0001 68_[+2]_44 chr2L:12822750-12822870 0.0001 109_[+2]_3 chr2L:11130971-11131091 0.0001 19_[+2]_93 chr2L:11829347-11829467 0.00012 112_[+2] chr3R:26005951-26006071 0.00012 76_[+2]_36 chr3R:11869309-11869429 0.00012 30_[+2]_82 chr3L:8395801-8395921 0.00017 111_[+2]_1 chrX:5517102-5517222 0.00017 63_[+2]_49 chr3L:11540489-11540609 0.00017 100_[+2]_12 chr3R:23803826-23803946 0.00017 108_[+2]_4 chr2L:10615171-10615291 0.00017 95_[+2]_17 chr3R:29062359-29062479 0.00017 78_[+2]_34 chr2L:1362361-1362481 0.00017 89_[+2]_23 chr3L:14780355-14780475 0.0002 51_[+2]_61 chr2R:19413351-19413471 0.0002 78_[+2]_34 chr3R:11372747-11372867 0.0002 19_[+2]_93 chrX:19494604-19494724 0.0002 4_[+2]_108 chr2L:13512933-13513053 0.0002 70_[+2]_42 chr3L:15715900-15716020 0.00026 22_[+2]_90 chr3R:14284448-14284568 0.00026 17_[+2]_95 chr3L:2894882-2895002 0.00026 56_[+2]_56 chr2L:7616914-7617034 0.00026 12_[+2]_100 chr3L:3896784-3896904 0.0003 66_[+2]_46 chr2R:24941266-24941386 0.0003 92_[+2]_20 chr3R:16748676-16748796 0.00031 73_[+2]_39 chr3L:9762248-9762368 0.00032 40_[+2]_72 chrX:16967559-16967679 0.0004 18_[+2]_94 chr2L:4292667-4292787 0.0004 8_[+2]_104 chr2L:5044488-5044608 0.0004 8_[+2]_104 chr3R:27209115-27209235 0.00046 111_[+2]_1 chr3L:16803831-16803951 0.00051 9_[+2]_103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGCTGSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BYGCTGSC width=8 seqs=52 chr2R:21571369-21571489 ( 92) TCGCTGGC 1 chrX:6110001-6110121 ( 75) TCGCTGGC 1 chr2L:5256599-5256719 ( 33) GCGCTGGC 1 chr2L:1723612-1723732 ( 53) GCGCTGGC 1 chr3R:9047782-9047902 ( 104) TCGCTGCC 1 chr2L:18921434-18921554 ( 109) CCGCTGCC 1 chrX:19153452-19153572 ( 36) CCGCCGGC 1 chr3R:11777242-11777362 ( 59) TCGCTGCC 1 chr3R:26539330-26539450 ( 100) TCGCTGCC 1 chr2L:16486477-16486597 ( 85) TCGCTCGC 1 chr3R:14008973-14009093 ( 4) TTGCTGGC 1 chr3R:23942903-23943023 ( 61) CTGCTGGC 1 chrX:3811623-3811743 ( 67) TTGCTGGC 1 chr3L:6904177-6904297 ( 49) CCGCTCGC 1 chr2L:21237397-21237517 ( 110) TCGCTCGC 1 chr2R:14009151-14009271 ( 4) CCGCTCGC 1 chr3R:6664508-6664628 ( 24) CCGCTCGC 1 chrX:13128116-13128236 ( 71) TTGCTGGC 1 chr2R:8327230-8327350 ( 81) TCGCTCGC 1 chr2R:9426406-9426526 ( 77) GCGCTCGC 1 chr2R:25076774-25076894 ( 13) GCGCTCGC 1 chr2R:11628149-11628269 ( 69) CCGCCGCC 1 chr2L:12822750-12822870 ( 110) CCGCCGCC 1 chr2L:11130971-11131091 ( 20) CCGCCGCC 1 chr2L:11829347-11829467 ( 113) CGGCTGGC 1 chr3R:26005951-26006071 ( 77) CGGCTGGC 1 chr3R:11869309-11869429 ( 31) CGGCTGGC 1 chr3L:8395801-8395921 ( 112) TTGCCGGC 1 chrX:5517102-5517222 ( 64) TCGCCCGC 1 chr3L:11540489-11540609 ( 101) TTGCTGCC 1 chr3R:23803826-23803946 ( 109) TTGCTGCC 1 chr2L:10615171-10615291 ( 96) CTGCTGCC 1 chr3R:29062359-29062479 ( 79) CTGCTGCC 1 chr2L:1362361-1362481 ( 90) TTGCCGGC 1 chr3L:14780355-14780475 ( 52) GTGCTGCC 1 chr2R:19413351-19413471 ( 79) GTGCCGGC 1 chr3R:11372747-11372867 ( 20) GCGCCCGC 1 chrX:19494604-19494724 ( 5) GCGCTCCC 1 chr2L:13512933-13513053 ( 71) GCGCCCGC 1 chr3L:15715900-15716020 ( 23) GTGCTCGC 1 chr3R:14284448-14284568 ( 18) CAGCTGGC 1 chr3L:2894882-2895002 ( 57) CAGCTGGC 1 chr2L:7616914-7617034 ( 13) TAGCTGGC 1 chr3L:3896784-3896904 ( 67) GGGCTGCC 1 chr2R:24941266-24941386 ( 93) GAGCTGGC 1 chr3R:16748676-16748796 ( 74) GTGCCGCC 1 chr3L:9762248-9762368 ( 41) TGGCTCGC 1 chrX:16967559-16967679 ( 19) GTGCCCGC 1 chr2L:4292667-4292787 ( 9) TGGCCGCC 1 chr2L:5044488-5044608 ( 9) TAGCTGCC 1 chr3R:27209115-27209235 ( 112) TGGCCCGC 1 chr3L:16803831-16803951 ( 10) TAGCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGCTGSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2487 E= 1.2e+003 -1234 58 31 57 -133 116 -69 1 -1234 -1234 220 -1234 -1234 228 -1234 -1234 -1234 49 -1234 132 -1234 58 167 -1234 -1234 75 159 -1234 -1234 228 -1234 -1234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGCTGSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 1.2e+003 0.000000 0.307692 0.269231 0.423077 0.115385 0.461538 0.134615 0.288462 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.288462 0.000000 0.711538 0.000000 0.307692 0.692308 0.000000 0.000000 0.346154 0.653846 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGCTGSC MEME-2 regular expression -------------------------------------------------------------------------------- [TCG][CT]GC[TC][GC][GC]C -------------------------------------------------------------------------------- Time 14.64 secs. ******************************************************************************** ******************************************************************************** MOTIF KTGTKTGY MEME-3 width = 8 sites = 41 llr = 347 E-value = 4.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTGTKTGY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::::::: pos.-specific C 1::::::6 probability G 4:a:3:a: matrix T 4a:a7a:4 bits 2.3 * * 2.1 * * 1.8 *** ** 1.6 *** ** Relative 1.4 *** ** Entropy 1.1 *** *** (12.2 bits) 0.9 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel GTGTTTGC consensus T G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGTKTGY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10775854-10775974 91 1.43e-05 AAATACGTGT GTGTTTGC AAACTGTGTG chr3L:642849-642969 109 3.30e-05 ATTTTATGCT TTGTTTGC CCAT chr2L:16534166-16534286 63 3.30e-05 ttgtttagtt ttgtttGC TCGTTAGCCG chr3L:5974737-5974857 34 3.30e-05 CATATGCGCC TTGTTTGC ATATAGAAAT chrX:3811623-3811743 108 3.30e-05 TGCCCTGACT TTGtttgc atttg chr3L:15715900-15716020 32 3.30e-05 CGTGCTCGCC TTGTTTGC CCTACGTTAA chr3R:20276143-20276263 46 3.30e-05 CACTTTCCTG TTGTTTGC TCAACACAAC chr2R:19413351-19413471 36 3.30e-05 TACATCACAC TTGTTTGC TGCGGGACAC chr2L:7339765-7339885 18 3.30e-05 AGTCGTTGAT TTGTTTGC ACTGACCCGC chr3R:23922262-23922382 4 3.30e-05 tgt ttgtttgC CTCTGCTGCA chr2L:5093261-5093381 62 4.39e-05 ACGCGCGGCt gtgtgtgc gtgtgtgagt chr2R:11469624-11469744 45 4.39e-05 GTCGACCGCA GTGTGTGC TTTGTGCTAT chr3R:26536434-26536554 84 4.39e-05 gcgagtgtgt gtgtgtgc gtgcgtgtac chr3R:23803826-23803946 84 4.39e-05 GTGAGCGAGT GTGTGTGC CTAGCATGGC chr3R:6351110-6351230 58 4.39e-05 ACAATACAGT GTGTGTGC GGTTTGGAGT chr3R:23134874-23134994 31 4.39e-05 GCTAAATAAT GTGTGTGC CTTGTAAGTG chr2L:7616914-7617034 4 4.39e-05 TGA GTGTGTGC TTAGCTGGCT chr3R:21350122-21350242 110 5.82e-05 AGGCCCGTCA TTGTGTGC GGT chr3R:13683669-13683789 77 9.15e-05 GTTTGTCGTG CTGTTTGC TTTTTTCTGC chr2L:6700812-6700932 34 9.15e-05 GCCACTTGCT CTGTTTGC CCACAAACAT chr2L:19190312-19190432 16 9.15e-05 TCGTGGCGAA GTGTTTGT TTATCCAGTT chrX:16782189-16782309 57 9.15e-05 TTTGGCTTTT GTGTTTGT GTTTTTTTGT chr2R:20126190-20126310 90 9.15e-05 AAAGTATTGT GTGTTTGT TTATTGAATT chr2R:24402597-24402717 49 9.15e-05 CACTTTCTAA CTGTTTGC ACGGCGCTTT chrX:5285908-5286028 73 9.15e-05 CGCTCATTAT CTGTTTGC ATGCGAAAAT chr2L:19192010-19192130 16 9.15e-05 CAACACTCGC GTGTTTGT GCCTCCGGCT chr2R:14009151-14009271 79 9.15e-05 CAGGCCAGTT GTGTTTGT TGTCAGTCTC chr2L:13838777-13838897 73 1.18e-04 TCTGTTTGGT TTGTTTGT AAATAGCCAA chr2R:18609042-18609162 29 1.18e-04 CCCGTTTTGT TTGTTTGT CTGGAATTGA chrX:13128116-13128236 28 1.18e-04 ATGGCTGCAA TTGTTTGT TGGATAAGAT chr2R:10559579-10559699 96 1.43e-04 CGCTGCATGT GTGTGTGT GAGCGAGAAG chr2L:4838619-4838739 58 1.43e-04 ATTGACGTGG GTGTGTGT ACATATCGAA chr3R:26005951-26006071 40 1.43e-04 CTCGGAGACT CTGTGTGC ACGCAACGAA chrX:10582167-10582287 60 1.43e-04 caACACGGCC GTGTGTGT CTGTCTGTGT chr2L:10615171-10615291 79 1.63e-04 GAATGTCTCT TTGTGTGT CAGTCCGTGC chr2L:1723612-1723732 39 1.63e-04 TCAGTTTGTG TTGTGTGT TTCCCTGCGC chr2L:16486477-16486597 73 1.82e-04 CCAGTCGTAC ATGTTTGC GCTCTCGCTC chr2R:9406872-9406992 12 1.82e-04 tttttggttt atgtttGC TATTGGGTGG chr3R:10203707-10203827 34 1.82e-04 ACAAATATTT ATGTTTGC TTACAGTGCA chr3R:6667449-6667569 53 2.00e-04 CTACTGTTTT CTGTTTGT TCTACTTGTG chrX:20644172-20644292 42 2.56e-04 GAACATTTGA ATGTTTGT TTTTTTGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGTKTGY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10775854-10775974 1.4e-05 90_[+3]_22 chr3L:642849-642969 3.3e-05 108_[+3]_4 chr2L:16534166-16534286 3.3e-05 62_[+3]_50 chr3L:5974737-5974857 3.3e-05 33_[+3]_79 chrX:3811623-3811743 3.3e-05 107_[+3]_5 chr3L:15715900-15716020 3.3e-05 31_[+3]_81 chr3R:20276143-20276263 3.3e-05 45_[+3]_67 chr2R:19413351-19413471 3.3e-05 35_[+3]_77 chr2L:7339765-7339885 3.3e-05 17_[+3]_95 chr3R:23922262-23922382 3.3e-05 3_[+3]_109 chr2L:5093261-5093381 4.4e-05 61_[+3]_51 chr2R:11469624-11469744 4.4e-05 44_[+3]_68 chr3R:26536434-26536554 4.4e-05 83_[+3]_29 chr3R:23803826-23803946 4.4e-05 83_[+3]_29 chr3R:6351110-6351230 4.4e-05 57_[+3]_55 chr3R:23134874-23134994 4.4e-05 30_[+3]_82 chr2L:7616914-7617034 4.4e-05 3_[+3]_109 chr3R:21350122-21350242 5.8e-05 109_[+3]_3 chr3R:13683669-13683789 9.1e-05 76_[+3]_36 chr2L:6700812-6700932 9.1e-05 33_[+3]_79 chr2L:19190312-19190432 9.1e-05 15_[+3]_97 chrX:16782189-16782309 9.1e-05 56_[+3]_56 chr2R:20126190-20126310 9.1e-05 89_[+3]_23 chr2R:24402597-24402717 9.1e-05 48_[+3]_64 chrX:5285908-5286028 9.1e-05 72_[+3]_40 chr2L:19192010-19192130 9.1e-05 15_[+3]_97 chr2R:14009151-14009271 9.1e-05 78_[+3]_34 chr2L:13838777-13838897 0.00012 72_[+3]_40 chr2R:18609042-18609162 0.00012 28_[+3]_84 chrX:13128116-13128236 0.00012 27_[+3]_85 chr2R:10559579-10559699 0.00014 95_[+3]_17 chr2L:4838619-4838739 0.00014 57_[+3]_55 chr3R:26005951-26006071 0.00014 39_[+3]_73 chrX:10582167-10582287 0.00014 59_[+3]_53 chr2L:10615171-10615291 0.00016 78_[+3]_34 chr2L:1723612-1723732 0.00016 38_[+3]_74 chr2L:16486477-16486597 0.00018 72_[+3]_40 chr2R:9406872-9406992 0.00018 11_[+3]_101 chr3R:10203707-10203827 0.00018 33_[+3]_79 chr3R:6667449-6667569 0.0002 52_[+3]_60 chrX:20644172-20644292 0.00026 41_[+3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGTKTGY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTGTKTGY width=8 seqs=41 chrX:10775854-10775974 ( 91) GTGTTTGC 1 chr3L:642849-642969 ( 109) TTGTTTGC 1 chr2L:16534166-16534286 ( 63) TTGTTTGC 1 chr3L:5974737-5974857 ( 34) TTGTTTGC 1 chrX:3811623-3811743 ( 108) TTGTTTGC 1 chr3L:15715900-15716020 ( 32) TTGTTTGC 1 chr3R:20276143-20276263 ( 46) TTGTTTGC 1 chr2R:19413351-19413471 ( 36) TTGTTTGC 1 chr2L:7339765-7339885 ( 18) TTGTTTGC 1 chr3R:23922262-23922382 ( 4) TTGTTTGC 1 chr2L:5093261-5093381 ( 62) GTGTGTGC 1 chr2R:11469624-11469744 ( 45) GTGTGTGC 1 chr3R:26536434-26536554 ( 84) GTGTGTGC 1 chr3R:23803826-23803946 ( 84) GTGTGTGC 1 chr3R:6351110-6351230 ( 58) GTGTGTGC 1 chr3R:23134874-23134994 ( 31) GTGTGTGC 1 chr2L:7616914-7617034 ( 4) GTGTGTGC 1 chr3R:21350122-21350242 ( 110) TTGTGTGC 1 chr3R:13683669-13683789 ( 77) CTGTTTGC 1 chr2L:6700812-6700932 ( 34) CTGTTTGC 1 chr2L:19190312-19190432 ( 16) GTGTTTGT 1 chrX:16782189-16782309 ( 57) GTGTTTGT 1 chr2R:20126190-20126310 ( 90) GTGTTTGT 1 chr2R:24402597-24402717 ( 49) CTGTTTGC 1 chrX:5285908-5286028 ( 73) CTGTTTGC 1 chr2L:19192010-19192130 ( 16) GTGTTTGT 1 chr2R:14009151-14009271 ( 79) GTGTTTGT 1 chr2L:13838777-13838897 ( 73) TTGTTTGT 1 chr2R:18609042-18609162 ( 29) TTGTTTGT 1 chrX:13128116-13128236 ( 28) TTGTTTGT 1 chr2R:10559579-10559699 ( 96) GTGTGTGT 1 chr2L:4838619-4838739 ( 58) GTGTGTGT 1 chr3R:26005951-26006071 ( 40) CTGTGTGC 1 chrX:10582167-10582287 ( 60) GTGTGTGT 1 chr2L:10615171-10615291 ( 79) TTGTGTGT 1 chr2L:1723612-1723732 ( 39) TTGTGTGT 1 chr2L:16486477-16486597 ( 73) ATGTTTGC 1 chr2R:9406872-9406992 ( 12) ATGTTTGC 1 chr3R:10203707-10203827 ( 34) ATGTTTGC 1 chr3R:6667449-6667569 ( 53) CTGTTTGT 1 chrX:20644172-20644292 ( 42) ATGTTTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGTKTGY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9173 E= 4.4e-003 -157 -49 84 36 -1200 -1200 -1200 181 -1200 -1200 220 -1200 -1200 -1200 -1200 181 -1200 -1200 65 120 -1200 -1200 -1200 181 -1200 -1200 220 -1200 -1200 162 -1200 36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGTKTGY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 4.4e-003 0.097561 0.146341 0.390244 0.365854 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.341463 0.658537 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.634146 0.000000 0.365854 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGTKTGY MEME-3 regular expression -------------------------------------------------------------------------------- [GT]TGT[TG]TG[CT] -------------------------------------------------------------------------------- Time 20.81 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCGCCA MEME-4 width = 8 sites = 4 llr = 47 E-value = 1.2e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCGCCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:::::a pos.-specific C a::a:aa: probability G ::a:a::: matrix T :::::::: bits 2.3 * ***** 2.1 * ***** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (17.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCGCCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGCCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:4530032-4530152 14 7.20e-06 AACACGCTAG CAGCGCCA TCTGACGGGG chr2L:8083280-8083400 40 7.20e-06 TTCATCCGCT CAGCGCCA GTGTTGGATA chr3R:23803826-23803946 7 7.20e-06 TGAAAC CAGCGCCA AAACAAAACG chr2L:1362361-1362481 69 7.20e-06 GCACTTCTGC CAGCGCCA TCTGTTGAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGCCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4530032-4530152 7.2e-06 13_[+4]_99 chr2L:8083280-8083400 7.2e-06 39_[+4]_73 chr3R:23803826-23803946 7.2e-06 6_[+4]_106 chr2L:1362361-1362481 7.2e-06 68_[+4]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGCCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCGCCA width=8 seqs=4 chrX:4530032-4530152 ( 14) CAGCGCCA 1 chr2L:8083280-8083400 ( 40) CAGCGCCA 1 chr3R:23803826-23803946 ( 7) CAGCGCCA 1 chr2L:1362361-1362481 ( 69) CAGCGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGCCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 1.2e+005 -865 228 -865 -865 178 -865 -865 -865 -865 -865 220 -865 -865 228 -865 -865 -865 -865 220 -865 -865 228 -865 -865 -865 228 -865 -865 178 -865 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGCCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.2e+005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGCCA MEME-4 regular expression -------------------------------------------------------------------------------- CAGCGCCA -------------------------------------------------------------------------------- Time 26.91 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCKGCG MEME-5 width = 8 sites = 6 llr = 68 E-value = 1.4e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCKGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C a::a::a: probability G ::a:3a:a matrix T ::::7::: bits 2.3 * ** *** 2.1 * ** *** 1.8 **** *** 1.6 **** *** Relative 1.4 **** *** Entropy 1.1 **** *** (16.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCTGCG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCKGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16782189-16782309 23 7.51e-06 GGTGCAAACA CAGCTGCG ACATTAGTTT chrX:10775854-10775974 41 7.51e-06 TCTTGCCTTA CAGCTGCG AAACGGACTG chrX:9251370-9251490 61 7.51e-06 CCAGGAAATG CAGCTGCG GCCACAATAA chr2L:13512933-13513053 48 7.51e-06 GCTGCTGCTG CAGCTGCG ACGCTGTTGC chr3L:642849-642969 64 1.32e-05 CCAAGCATAC CAGCGGCG ACCGAATCTA chr2L:523639-523759 38 1.32e-05 ctgtatctCA CAGCGGCG CACGAAAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCKGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16782189-16782309 7.5e-06 22_[+5]_90 chrX:10775854-10775974 7.5e-06 40_[+5]_72 chrX:9251370-9251490 7.5e-06 60_[+5]_52 chr2L:13512933-13513053 7.5e-06 47_[+5]_65 chr3L:642849-642969 1.3e-05 63_[+5]_49 chr2L:523639-523759 1.3e-05 37_[+5]_75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCKGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCKGCG width=8 seqs=6 chrX:16782189-16782309 ( 23) CAGCTGCG 1 chrX:10775854-10775974 ( 41) CAGCTGCG 1 chrX:9251370-9251490 ( 61) CAGCTGCG 1 chr2L:13512933-13513053 ( 48) CAGCTGCG 1 chr3L:642849-642969 ( 64) CAGCGGCG 1 chr2L:523639-523759 ( 38) CAGCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCKGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.6482 E= 1.4e+005 -923 228 -923 -923 178 -923 -923 -923 -923 -923 220 -923 -923 228 -923 -923 -923 -923 61 122 -923 -923 220 -923 -923 228 -923 -923 -923 -923 220 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCKGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.4e+005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCKGCG MEME-5 regular expression -------------------------------------------------------------------------------- CAGC[TG]GCG -------------------------------------------------------------------------------- Time 33.00 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10265432-10265552 9.25e-01 120 chr3L:17993422-17993542 3.92e-02 44_[+1(9.86e-05)]_68 chrX:2861116-2861236 3.90e-01 120 chr2R:21514538-21514658 4.13e-01 120 chr2L:13512933-13513053 1.21e-03 47_[+5(7.51e-06)]_65 chr2L:14539995-14540115 9.73e-01 120 chrX:2166280-2166400 7.08e-01 120 chr2L:901465-901585 1.61e-01 120 chr2L:1362361-1362481 2.44e-03 68_[+4(7.20e-06)]_44 chr2L:6795047-6795167 5.74e-01 120 chr3L:824560-824680 6.93e-01 120 chr3L:21130980-21131100 1.74e-01 3_[+1(9.86e-05)]_109 chr2R:8327230-8327350 5.54e-02 80_[+2(7.88e-05)]_32 chrX:9220557-9220677 1.12e-01 120 chr3R:30164218-30164338 6.59e-01 120 chr3L:1216554-1216674 9.63e-01 120 chrX:19494604-19494724 3.42e-03 48_[+1(3.30e-05)]_64 chr3R:29062359-29062479 3.21e-02 120 chr2L:1723612-1723732 3.02e-04 52_[+2(1.84e-05)]_60 chr2R:21910055-21910175 7.22e-01 120 chr2L:5044488-5044608 1.17e-01 120 chr2R:24941266-24941386 1.41e-01 120 chrX:13128116-13128236 9.48e-03 70_[+2(7.88e-05)]_42 chrX:10115658-10115778 6.13e-02 120 chrX:18930354-18930474 3.63e-02 120 chr2L:11130971-11131091 6.76e-05 29_[+1(9.86e-05)]_83 chrX:17021561-17021681 9.24e-01 120 chr3R:11312513-11312633 7.77e-01 120 chrX:13404016-13404136 5.68e-01 120 chr2R:18609042-18609162 1.41e-02 67_[+1(1.43e-05)]_45 chr3R:7779735-7779855 2.36e-01 120 chr3R:8784914-8785034 8.44e-01 120 chr2L:4292667-4292787 1.42e-01 120 chr2L:10615171-10615291 4.04e-03 120 chr2L:7616914-7617034 1.65e-02 3_[+3(4.39e-05)]_109 chr3R:23134874-23134994 8.07e-05 30_[+3(4.39e-05)]_82 chr2R:7381776-7381896 4.28e-01 120 chrX:9251370-9251490 5.43e-04 60_[+5(7.51e-06)]_24_[+1(9.86e-05)]_\ 20 chr2R:22197273-22197393 6.04e-01 120 chr3R:6869470-6869590 7.32e-01 120 chr2L:12822750-12822870 3.21e-02 120 chr3R:11372747-11372867 1.52e-03 17_[+4(4.24e-05)]_95 chr3L:2894882-2895002 2.65e-03 100_[+4(4.24e-05)]_12 chr3L:12037931-12038051 8.51e-01 120 chrX:1880271-1880391 5.83e-01 120 chrX:20644172-20644292 2.08e-01 120 chr3R:23922262-23922382 1.41e-03 3_[+3(3.30e-05)]_109 chr3R:6351110-6351230 1.55e-02 57_[+3(4.39e-05)]_8_[+3(4.39e-05)]_\ 39 chr2R:25076774-25076894 8.01e-02 12_[+2(9.19e-05)]_100 chr2L:3372701-3372821 1.49e-01 120 chr2L:18505603-18505723 7.89e-01 120 chr2R:19874679-19874799 5.21e-01 120 chr3R:6973342-6973462 2.35e-01 120 chr3R:10150678-10150798 6.97e-02 120 chr3L:18114475-18114595 1.68e-01 120 chr3R:11869309-11869429 1.18e-01 120 chr2L:19200406-19200526 6.04e-01 120 chr3R:23803826-23803946 7.72e-05 6_[+4(7.20e-06)]_69_[+3(4.39e-05)]_\ 29 chrX:3136842-3136962 5.56e-01 120 chr3R:10630112-10630232 9.05e-01 120 chr3R:6664508-6664628 8.73e-03 23_[+2(7.88e-05)]_1_[+1(1.43e-05)]_\ 80 chr2L:14236417-14236537 3.90e-01 120 chr2R:18288771-18288891 1.01e-02 108_[+1(1.43e-05)]_4 chrX:5564003-5564123 5.59e-01 120 chr3R:26536434-26536554 1.69e-01 83_[+3(4.39e-05)]_29 chr2R:13261772-13261892 9.25e-01 120 chr3R:26539330-26539450 1.82e-04 43_[+2(9.19e-05)]_34_[+1(5.28e-05)]_\ 6_[+2(3.96e-05)]_13 chr2R:19275711-19275831 6.79e-01 120 chr3R:11777242-11777362 1.26e-02 58_[+2(3.96e-05)]_54 chr2L:13838777-13838897 6.10e-03 41_[+1(3.30e-05)]_71 chr3L:11492595-11492715 3.42e-02 120 chr2L:10276996-10277116 5.30e-01 120 chr3L:20276812-20276932 8.16e-01 120 chr2L:14021763-14021883 1.79e-01 120 chr3L:11408719-11408839 4.90e-01 120 chr2R:12458330-12458450 8.28e-01 120 chrX:16967559-16967679 1.13e-02 120 chr2R:14009151-14009271 1.48e-03 3_[+2(7.88e-05)]_67_[+3(9.15e-05)]_\ 34 chr2L:7339765-7339885 6.34e-02 17_[+3(3.30e-05)]_95 chr3R:14284448-14284568 2.56e-03 120 chr3R:10648889-10649009 3.04e-02 68_[+4(9.41e-05)]_44 chr2L:14490959-14491079 1.18e-01 120 chrX:3367354-3367474 9.17e-01 120 chr2R:7063856-7063976 9.76e-01 120 chr3R:6723899-6724019 8.40e-01 120 chr3L:7634960-7635080 8.07e-01 120 chr3L:22136112-22136232 2.51e-01 120 chrX:6642988-6643108 7.87e-01 120 chr2R:11628149-11628269 3.26e-03 120 chr2L:19377355-19377475 1.81e-01 120 chrX:10600635-10600755 3.23e-01 45_[+1(9.86e-05)]_67 chr2L:19576686-19576806 2.85e-02 29_[+1(5.28e-05)]_83 chr3R:10628425-10628545 9.88e-01 120 chr3L:9762248-9762368 1.03e-01 120 chr2R:19413351-19413471 2.56e-05 35_[+3(3.30e-05)]_52_[+1(1.43e-05)]_\ 17 chr2L:21237397-21237517 9.84e-02 109_[+2(7.88e-05)]_3 chr2L:12351022-12351142 9.80e-01 120 chr3R:10203707-10203827 8.18e-02 120 chr2L:19192010-19192130 6.26e-02 15_[+3(9.15e-05)]_97 chrX:17510585-17510705 5.85e-01 120 chr3L:6904177-6904297 9.43e-03 48_[+2(7.88e-05)]_64 chr2L:117846-117966 2.15e-01 120 chr3R:20276143-20276263 3.29e-02 45_[+3(3.30e-05)]_67 chr3R:9157910-9158030 1.74e-01 120 chrX:2156090-2156210 1.40e-01 79_[+1(5.28e-05)]_33 chrX:18921063-18921183 9.47e-01 120 chr3R:29255483-29255603 1.62e-01 120 chr2L:14409429-14409549 6.34e-01 120 chr3L:3896784-3896904 3.24e-01 120 chr2R:11469624-11469744 7.54e-02 44_[+3(4.39e-05)]_68 chrX:5285908-5286028 2.02e-01 72_[+3(9.15e-05)]_40 chr2R:10238119-10238239 4.87e-03 83_[+1(1.43e-05)]_29 chr3R:21493756-21493876 8.02e-01 120 chr2R:11738728-11738848 3.29e-01 120 chrX:19153452-19153572 5.16e-03 35_[+2(3.96e-05)]_44_[+4(9.41e-05)]_\ 25 chr3L:15715900-15716020 2.60e-03 31_[+3(3.30e-05)]_81 chr3R:14608993-14609113 6.86e-02 120 chrX:6110001-6110121 8.96e-04 74_[+2(1.27e-05)]_38 chr2L:5093261-5093381 1.94e-03 61_[+3(4.39e-05)]_51 chr3L:14780355-14780475 1.09e-04 88_[+1(1.43e-05)]_24 chr2R:21134383-21134503 6.29e-01 120 chr2L:2494661-2494781 3.78e-02 52_[+1(3.30e-05)]_60 chr2L:8083280-8083400 1.53e-02 39_[+4(7.20e-06)]_73 chr2R:22383021-22383141 7.91e-01 120 chr3L:11540489-11540609 1.37e-01 120 chr3R:14017767-14017887 2.82e-01 120 chr2R:23868644-23868764 5.43e-01 120 chrX:6614439-6614559 5.95e-02 76_[+1(1.43e-05)]_36 chr3L:6981824-6981944 3.18e-01 120 chrX:5517102-5517222 5.09e-02 120 chrX:9137342-9137462 8.56e-01 120 chr3R:26937621-26937741 2.69e-01 120 chr2R:13960701-13960821 5.78e-01 120 chr3L:2851086-2851206 9.13e-01 120 chrX:16644930-16645050 4.38e-01 120 chrX:8720254-8720374 7.09e-01 120 chr2L:18921434-18921554 2.66e-02 108_[+2(3.96e-05)]_4 chr2R:7490633-7490753 2.43e-01 120 chr2L:3003543-3003663 8.02e-01 120 chrX:4530032-4530152 3.33e-03 13_[+4(7.20e-06)]_99 chr3R:28845329-28845449 4.27e-01 120 chrX:10582167-10582287 1.46e-01 120 chr2L:5256599-5256719 2.21e-03 32_[+2(1.84e-05)]_80 chr3R:22260338-22260458 4.88e-01 120 chr2R:11541268-11541388 1.12e-02 14_[+1(1.43e-05)]_90_[+1(9.86e-05)] chr3R:21112536-21112656 6.88e-02 120 chr3L:15691360-15691480 9.99e-01 120 chr2L:20950777-20950897 1.05e-02 84_[+1(9.86e-05)]_28 chrX:5639233-5639353 7.09e-01 120 chr3L:16806208-16806328 8.65e-01 120 chr2R:18662406-18662526 8.82e-01 120 chr2R:9406872-9406992 5.67e-02 31_[+1(9.86e-05)]_81 chr3L:2152100-2152220 9.38e-01 120 chr2R:24402597-24402717 4.70e-02 48_[+3(9.15e-05)]_64 chr3L:12062943-12063063 9.88e-01 120 chr3R:25515497-25515617 4.28e-01 120 chr3R:9047782-9047902 2.35e-02 103_[+2(3.96e-05)]_9 chr3R:10100683-10100803 5.83e-01 120 chr2L:15746728-15746848 9.29e-02 120 chr3R:24206869-24206989 9.16e-01 120 chr3R:26005951-26006071 2.69e-02 120 chr3R:30413928-30414048 7.92e-01 120 chr2L:18881378-18881498 5.37e-02 120 chr3R:29591612-29591732 1.87e-02 105_[+4(9.41e-05)]_7 chr3R:22133854-22133974 6.78e-01 120 chr3L:21509579-21509699 9.19e-01 120 chr3L:13918037-13918157 6.14e-01 120 chr2R:15835495-15835615 8.26e-01 120 chrX:3811623-3811743 2.66e-03 66_[+2(7.88e-05)]_33_[+3(3.30e-05)]_\ 5 chr3L:628421-628541 2.78e-01 120 chr3L:3305573-3305693 2.76e-02 7_[+1(1.43e-05)]_105 chr2L:7313660-7313780 1.86e-01 112_[+4(4.24e-05)] chr2R:13991290-13991410 1.78e-01 120 chrX:10775854-10775974 3.54e-05 40_[+5(7.51e-06)]_29_[+1(9.86e-05)]_\ 5_[+3(1.43e-05)]_22 chr3R:23942903-23943023 1.22e-02 60_[+2(7.88e-05)]_52 chr3L:3300455-3300575 9.13e-01 120 chr2L:4838619-4838739 7.37e-02 120 chr2R:20126190-20126310 4.25e-02 89_[+3(9.15e-05)]_23 chr2R:20106599-20106719 5.58e-01 120 chr2L:11206916-11207036 2.47e-01 120 chrX:16782189-16782309 1.70e-05 14_[+1(3.30e-05)]_[+5(7.51e-06)]_26_\ [+3(9.15e-05)]_56 chr3L:11403695-11403815 6.94e-01 120 chr2L:19190312-19190432 1.80e-01 15_[+3(9.15e-05)]_97 chr3R:28631971-28632091 9.27e-01 120 chr2R:24943223-24943343 7.49e-01 120 chr2L:6700812-6700932 1.29e-02 33_[+3(9.15e-05)]_79 chr3R:13683669-13683789 2.19e-02 76_[+3(9.15e-05)]_36 chr3R:5856350-5856470 1.00e+00 120 chr3L:8395801-8395921 1.55e-01 120 chr2L:3566718-3566838 7.96e-01 120 chr3L:613752-613872 6.99e-01 120 chr2R:10559579-10559699 5.77e-02 120 chr2L:13215940-13216060 5.61e-01 120 chr3L:10845216-10845336 1.44e-01 120 chr2L:7632914-7633034 4.53e-01 120 chr2R:21571369-21571489 8.07e-02 32_[+2(1.84e-05)]_51_[+2(1.27e-05)]_\ 21 chr2L:3533231-3533351 6.74e-01 120 chr3R:16748676-16748796 1.22e-01 120 chr3R:17943502-17943622 3.12e-01 120 chr2R:21049351-21049471 4.36e-01 120 chr3L:15728290-15728410 1.35e-01 120 chr3R:27209115-27209235 4.00e-03 58_[+1(3.30e-05)]_54 chr2L:11829347-11829467 1.41e-01 120 chr2L:3861543-3861663 3.61e-01 120 chr2R:21379260-21379380 1.46e-01 120 chr2R:19357499-19357619 2.07e-01 120 chr3R:8886910-8887030 5.50e-01 120 chr3L:1376108-1376228 8.12e-01 120 chr3L:13189363-13189483 4.57e-02 93_[+1(3.30e-05)]_19 chr3R:26654699-26654819 5.27e-01 120 chr2L:523639-523759 4.78e-03 37_[+5(1.32e-05)]_75 chr3R:27138093-27138213 7.04e-01 120 chr3R:6667449-6667569 2.33e-01 120 chrX:11548888-11549008 8.52e-01 120 chr3R:21270023-21270143 2.12e-02 80_[+1(3.30e-05)]_32 chrX:20519194-20519314 2.32e-01 120 chr3L:5974737-5974857 1.15e-02 33_[+3(3.30e-05)]_79 chr3L:16803831-16803951 1.78e-01 120 chr3R:14008973-14009093 1.89e-01 3_[+2(7.88e-05)]_109 chr3L:4607862-4607982 8.04e-01 120 chr2L:18666041-18666161 1.53e-01 120 chr3R:20285812-20285932 5.27e-01 120 chr2L:16534166-16534286 3.89e-02 62_[+3(3.30e-05)]_50 chr3L:3090776-3090896 9.99e-01 120 chr2L:20945431-20945551 7.03e-01 120 chr3L:7090939-7091059 9.77e-01 120 chr2L:8834914-8835034 9.48e-01 120 chr3R:13999673-13999793 7.11e-01 120 chrX:11807569-11807689 2.80e-02 49_[+1(9.86e-05)]_63 chrX:18923570-18923690 8.24e-01 120 chr3L:19000594-19000714 6.60e-02 120 chr3L:2586397-2586517 2.49e-01 120 chr2L:2203207-2203327 6.94e-02 120 chr3L:2820993-2821113 1.39e-01 120 chrX:1907776-1907896 7.69e-01 120 chr3R:9055269-9055389 7.70e-01 120 chr3L:8549389-8549509 6.55e-01 120 chr3L:642849-642969 3.92e-05 40_[+1(9.86e-05)]_15_[+5(1.32e-05)]_\ 37_[+3(3.30e-05)]_4 chr3R:21350122-21350242 6.08e-02 109_[+3(5.82e-05)]_3 chr2R:11601021-11601141 2.21e-01 120 chr3L:11483278-11483398 9.69e-01 120 chr3R:4319618-4319738 2.59e-01 120 chrX:4010981-4011101 6.09e-01 120 chr2R:6630626-6630746 3.57e-01 112_[+1(9.86e-05)] chr2R:9426406-9426526 1.03e-01 76_[+2(9.19e-05)]_36 chr3R:9605180-9605300 2.15e-01 120 chr3R:20989814-20989934 4.92e-01 120 chr2L:16486477-16486597 1.60e-03 84_[+2(7.88e-05)]_28 chr3R:23176541-23176661 2.15e-01 120 chr2R:11635963-11636083 2.55e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************