******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/bsh.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:19697507-19697627 1.0000 120 chr2R:24141771-24141891 1.0000 120 chr2L:18752969-18753089 1.0000 120 chr3L:17305502-17305622 1.0000 120 chr3L:6584495-6584615 1.0000 120 chr3L:21237137-21237257 1.0000 120 chr2L:10760209-10760329 1.0000 120 chr3R:30326753-30326873 1.0000 120 chr2R:18569217-18569337 1.0000 120 chrX:5924533-5924653 1.0000 120 chr2R:13463435-13463555 1.0000 120 chrX:5051171-5051291 1.0000 120 chr3L:1441102-1441222 1.0000 120 chrX:3189921-3190041 1.0000 120 chr3R:28662134-28662254 1.0000 120 chr3L:21894239-21894359 1.0000 120 chrX:13406413-13406533 1.0000 120 chr3R:27088904-27089024 1.0000 120 chrX:17488515-17488635 1.0000 120 chr3L:6355089-6355209 1.0000 120 chr2R:8957909-8958029 1.0000 120 chr3L:18080148-18080268 1.0000 120 chr3R:28934477-28934597 1.0000 120 chr2R:13023079-13023199 1.0000 120 chr2L:12543974-12544094 1.0000 120 chrX:17694332-17694452 1.0000 120 chr3R:15808225-15808345 1.0000 120 chrX:6745683-6745803 1.0000 120 chr2R:14083103-14083223 1.0000 120 chr3L:590040-590160 1.0000 120 chr3L:13180539-13180659 1.0000 120 chrX:11340310-11340430 1.0000 120 chr2R:15906142-15906262 1.0000 120 chr2R:20166270-20166390 1.0000 120 chrX:11545132-11545252 1.0000 120 chr3L:19213277-19213397 1.0000 120 chr3L:14462498-14462618 1.0000 120 chr2L:11014817-11014937 1.0000 120 chrX:12914016-12914136 1.0000 120 chr2R:17843421-17843541 1.0000 120 chr2R:10441136-10441256 1.0000 120 chrX:1080881-1081001 1.0000 120 chr2R:15808756-15808876 1.0000 120 chr3R:18491279-18491399 1.0000 120 chr3R:19070691-19070811 1.0000 120 chr3L:19234487-19234607 1.0000 120 chrX:18800317-18800437 1.0000 120 chrX:19485198-19485318 1.0000 120 chr2L:8002334-8002454 1.0000 120 chr3L:14649249-14649369 1.0000 120 chr3R:21948795-21948915 1.0000 120 chrX:15620528-15620648 1.0000 120 chr3R:26502185-26502305 1.0000 120 chr3L:4346526-4346646 1.0000 120 chr2R:21783618-21783738 1.0000 120 chr3R:6141851-6141971 1.0000 120 chr3L:6272325-6272445 1.0000 120 chr3L:9847070-9847190 1.0000 120 chr3L:7225494-7225614 1.0000 120 chrX:10479092-10479212 1.0000 120 chr2R:11072724-11072844 1.0000 120 chr2L:2727873-2727993 1.0000 120 chr2R:19157686-19157806 1.0000 120 chr3L:5943694-5943814 1.0000 120 chr2L:131461-131581 1.0000 120 chr3L:18096836-18096956 1.0000 120 chr2R:18157821-18157941 1.0000 120 chr3L:16803349-16803469 1.0000 120 chrX:4965588-4965708 1.0000 120 chr3R:21634834-21634954 1.0000 120 chrX:6632017-6632137 1.0000 120 chr2R:21300904-21301024 1.0000 120 chrX:1119343-1119463 1.0000 120 chr3L:10531150-10531270 1.0000 120 chr3L:17504714-17504834 1.0000 120 chr2L:18831393-18831513 1.0000 120 chrX:6730729-6730849 1.0000 120 chr3L:21122764-21122884 1.0000 120 chr3R:27706100-27706220 1.0000 120 chr3L:18231482-18231602 1.0000 120 chrX:1966089-1966209 1.0000 120 chrX:6708221-6708341 1.0000 120 chr3R:31644476-31644596 1.0000 120 chr3R:20280652-20280772 1.0000 120 chrX:13754740-13754860 1.0000 120 chr4:829943-830063 1.0000 120 chr3L:22109779-22109899 1.0000 120 chr3L:5941270-5941390 1.0000 120 chrX:2648369-2648489 1.0000 120 chr2L:4297000-4297120 1.0000 120 chr3L:11634677-11634797 1.0000 120 chr3R:23319006-23319126 1.0000 120 chr2L:16588930-16589050 1.0000 120 chr2L:11074028-11074148 1.0000 120 chr2L:4648930-4649050 1.0000 120 chr2L:3095519-3095639 1.0000 120 chrX:2976158-2976278 1.0000 120 chr2R:7791633-7791753 1.0000 120 chr2L:14681766-14681886 1.0000 120 chrX:12239307-12239427 1.0000 120 chrX:3100038-3100158 1.0000 120 chr2R:22571960-22572080 1.0000 120 chr2R:17871224-17871344 1.0000 120 chr2R:8065334-8065454 1.0000 120 chrX:21324448-21324568 1.0000 120 chr3R:19069858-19069978 1.0000 120 chr3R:21933986-21934106 1.0000 120 chrX:9344312-9344432 1.0000 120 chr2L:2519370-2519490 1.0000 120 chr3R:26442973-26443093 1.0000 120 chr3L:346788-346908 1.0000 120 chr2R:18879238-18879358 1.0000 120 chr2L:6100496-6100616 1.0000 120 chr2R:21531806-21531926 1.0000 120 chr3R:9222546-9222666 1.0000 120 chr3L:3225937-3226057 1.0000 120 chrX:7097519-7097639 1.0000 120 chr3L:13288430-13288550 1.0000 120 chr3R:14847984-14848104 1.0000 120 chr2L:8812980-8813100 1.0000 120 chr3R:29280785-29280905 1.0000 120 chr3R:29211793-29211913 1.0000 120 chr2L:18005589-18005709 1.0000 120 chr3R:30344656-30344776 1.0000 120 chr3R:24152687-24152807 1.0000 120 chr3L:16002479-16002599 1.0000 120 chr3R:18488253-18488373 1.0000 120 chr2L:12527784-12527904 1.0000 120 chrX:3175227-3175347 1.0000 120 chr3R:18146813-18146933 1.0000 120 chr2R:7764297-7764417 1.0000 120 chr2L:21004929-21005049 1.0000 120 chr2L:2802644-2802764 1.0000 120 chr3L:16748388-16748508 1.0000 120 chr3L:6405034-6405154 1.0000 120 chr3L:16041735-16041855 1.0000 120 chrX:17806453-17806573 1.0000 120 chr3R:30005471-30005591 1.0000 120 chrX:13951573-13951693 1.0000 120 chr3R:13647144-13647264 1.0000 120 chr2R:10847365-10847485 1.0000 120 chr3R:21643359-21643479 1.0000 120 chr3L:5141381-5141501 1.0000 120 chr3R:11860004-11860124 1.0000 120 chr2R:11704605-11704725 1.0000 120 chr3L:19793018-19793138 1.0000 120 chr3L:5251611-5251731 1.0000 120 chrX:17355895-17356015 1.0000 120 chr3R:9389106-9389226 1.0000 120 chr2R:15664548-15664668 1.0000 120 chr3L:2817965-2818085 1.0000 120 chr2R:17469791-17469911 1.0000 120 chr2L:14506841-14506961 1.0000 120 chrX:15077825-15077945 1.0000 120 chrX:8839474-8839594 1.0000 120 chr3R:30773043-30773163 1.0000 120 chr3L:16464004-16464124 1.0000 120 chr3R:29250650-29250770 1.0000 120 chr2R:22596900-22597020 1.0000 120 chr3R:6664797-6664917 1.0000 120 chr3R:30833284-30833404 1.0000 120 chr3R:30338790-30338910 1.0000 120 chr2R:13478498-13478618 1.0000 120 chrX:6778236-6778356 1.0000 120 chrX:18544826-18544946 1.0000 120 chr2L:4417005-4417125 1.0000 120 chr2L:18943470-18943590 1.0000 120 chr2R:11180826-11180946 1.0000 120 chr2L:1459474-1459594 1.0000 120 chr3L:4745311-4745431 1.0000 120 chrX:15639153-15639273 1.0000 120 chrX:11569977-11570097 1.0000 120 chrX:8159126-8159246 1.0000 120 chr3L:21892766-21892886 1.0000 120 chr3R:4687332-4687452 1.0000 120 chr3R:20556849-20556969 1.0000 120 chr3L:11557301-11557421 1.0000 120 chr2L:9949401-9949521 1.0000 120 chr2L:7207797-7207917 1.0000 120 chr3L:18889378-18889498 1.0000 120 chr2R:13592931-13593051 1.0000 120 chr3R:8350004-8350124 1.0000 120 chr3R:29726031-29726151 1.0000 120 chr3L:8360423-8360543 1.0000 120 chrX:20166815-20166935 1.0000 120 chrX:11148009-11148129 1.0000 120 chr3R:18743260-18743380 1.0000 120 chr3R:22140194-22140314 1.0000 120 chr3L:20387962-20388082 1.0000 120 chrX:7980871-7980991 1.0000 120 chr2R:7040019-7040139 1.0000 120 chrX:10801244-10801364 1.0000 120 chr3R:8958463-8958583 1.0000 120 chr2R:23306109-23306229 1.0000 120 chr3L:10396671-10396791 1.0000 120 chr3R:18998464-18998584 1.0000 120 chr3L:15229556-15229676 1.0000 120 chr3L:17914199-17914319 1.0000 120 chr3L:1367129-1367249 1.0000 120 chr3R:30014036-30014156 1.0000 120 chrX:16633627-16633747 1.0000 120 chr2R:10548446-10548566 1.0000 120 chr2L:8229311-8229431 1.0000 120 chr3R:24970770-24970890 1.0000 120 chr2L:5494145-5494265 1.0000 120 chr2R:13468915-13469035 1.0000 120 chr3R:18485342-18485462 1.0000 120 chr3L:18245820-18245940 1.0000 120 chr3L:15005936-15006056 1.0000 120 chrX:11485300-11485420 1.0000 120 chr2R:14082355-14082475 1.0000 120 chr2R:24985723-24985843 1.0000 120 chr3R:31320037-31320157 1.0000 120 chr3R:11865252-11865372 1.0000 120 chr2R:8595878-8595998 1.0000 120 chr2L:9231825-9231945 1.0000 120 chr3L:13487069-13487189 1.0000 120 chr3R:11859224-11859344 1.0000 120 chr2R:18907112-18907232 1.0000 120 chr3L:21202733-21202853 1.0000 120 chr3R:12406793-12406913 1.0000 120 chr2R:21386699-21386819 1.0000 120 chr3L:16259581-16259701 1.0000 120 chr3R:19074346-19074466 1.0000 120 chr3R:8939804-8939924 1.0000 120 chr2L:2806354-2806474 1.0000 120 chr3R:18914417-18914537 1.0000 120 chrX:9139254-9139374 1.0000 120 chr2L:18344459-18344579 1.0000 120 chr2L:19317924-19318044 1.0000 120 chr2R:16154050-16154170 1.0000 120 chr3R:31723339-31723459 1.0000 120 chr3L:9367580-9367700 1.0000 120 chr3L:11442468-11442588 1.0000 120 chr3L:8881831-8881951 1.0000 120 chr2R:18355943-18356063 1.0000 120 chr3R:19255333-19255453 1.0000 120 chrX:10741951-10742071 1.0000 120 chr3L:7134973-7135093 1.0000 120 chr3L:5188499-5188619 1.0000 120 chr3R:24261764-24261884 1.0000 120 chr3L:22192345-22192465 1.0000 120 chr2L:7971551-7971671 1.0000 120 chr2L:11074227-11074347 1.0000 120 chr3R:14717305-14717425 1.0000 120 chr2L:524580-524700 1.0000 120 chr3L:539867-539987 1.0000 120 chr3R:25493951-25494071 1.0000 120 chr3R:23728236-23728356 1.0000 120 chr2L:843979-844099 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_bsh/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/bsh.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.311 C 0.195 G 0.194 T 0.3 Background letter frequencies (from file dataset with add-one prior applied): A 0.311 C 0.195 G 0.194 T 0.3 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTT MEME-1 width = 8 sites = 82 llr = 606 E-value = 7.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C 2:::1::1 probability G ::::1:11 matrix T 8aaa7a99 bits 2.4 2.1 1.9 1.7 ** * Relative 1.4 *** ** Entropy 1.2 **** *** (10.7 bits) 0.9 **** *** 0.7 **** *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23728236-23728356 46 6.56e-05 tttcatttat tttttttt tttttttctt chr2L:7971551-7971671 57 6.56e-05 ACTGTAACTA TTTTTTTT ATTTAATTTT chr3L:7134973-7135093 104 6.56e-05 CTGTTGATTT TTTTTTTT TGGATTTTG chr2R:18355943-18356063 49 6.56e-05 TCTATTTTTC TTTTTTTT GCGACAAATG chr3L:21202733-21202853 54 6.56e-05 GCCAGGTTCG TTTTTTTT CTGGGCAATT chr3R:11865252-11865372 61 6.56e-05 TTGTTTACAC TTTTTTTT TTGCGCAGAC chr3L:1367129-1367249 60 6.56e-05 GCCGTTTGTT TTTTTTTT TGTTGTGGAA chrX:7980871-7980991 98 6.56e-05 CCCCTGAGTA tttttttt atatttattt chrX:11569977-11570097 74 6.56e-05 TTGTTCCACC TTTTTTTT GCTTTTGCTT chr3R:30338790-30338910 16 6.56e-05 TCCGCTGTCT TTTTTTTT CAGTTTTCAG chr3R:30005471-30005591 65 6.56e-05 ctttttcatt tttttttt CGTTGCATTT chr3R:18146813-18146933 28 6.56e-05 tttttcccat tttttttt cttCGCCCAG chr2R:21531806-21531926 85 6.56e-05 CCCTGGGTTT TTTTTTTT TGCTGTTCAT chr3R:21933986-21934106 99 6.56e-05 TTTTTTACGC TTTTTTTT GTCGGTTGAC chr2R:17871224-17871344 76 6.56e-05 GTGGCGCGTG TTTTTTTT CATCGTTTGT chrX:2648369-2648489 77 6.56e-05 TCGCTTCGGt tttttttt attttctttt chr3L:5941270-5941390 88 6.56e-05 TTAATTGTTT TTTTTTTT TAAGTGTTTT chr4:829943-830063 111 6.56e-05 taattttttt tttttttt tt chrX:13754740-13754860 68 6.56e-05 gtttctgcGT TTTTTTTT ATTTTGCCAC chrX:6730729-6730849 107 6.56e-05 TGCCTTGCTA TTTTTTTT AGTTTT chrX:6632017-6632137 69 6.56e-05 tttggtttgc tttttttt ttttgtgtgt chr3R:21634834-21634954 87 6.56e-05 CTATGCTTGA TTTTTTTT CAACCATTTT chr3L:5943694-5943814 46 6.56e-05 ttttcttcat tttttttt tctttttttt chr2L:2727873-2727993 98 6.56e-05 CAGCTTTGCT TTTTTTTT GGTGGCTGCT chr2R:15808756-15808876 12 6.56e-05 GTATTTCGtt tttttttt ttttgttata chrX:11340310-11340430 14 6.56e-05 tgtttttttt tttttttt ttttgttctg chr2R:13023079-13023199 55 6.56e-05 GCACACGTCt tttttttt gttttttttt chr3L:18080148-18080268 94 6.56e-05 TTTTTTTTTT TTTTTTTT GTGAAAATTG chr3L:1441102-1441222 53 6.56e-05 TTTAAttttt tttttttt ttactttttt chr3R:30326753-30326873 102 6.56e-05 tttattatta tttttttt tttttatttt chr3L:539867-539987 35 1.08e-04 AACTTACTTG CTTTTTTT AGCAGCCACG chr3L:8360423-8360543 4 1.08e-04 ACA CTTTTTTT ATCCGTATCT chr3R:30773043-30773163 113 1.08e-04 cttttctttt cttttttt chr3L:346788-346908 82 1.08e-04 CGCGTTTGAA CTTTTTTT AAGCTTAAAA chrX:9344312-9344432 102 1.08e-04 TATGGGGGCT CTTTTTTT ACCCGCTCGG chrX:2976158-2976278 42 1.08e-04 GTGTTTTTGC CTTTTTTT CGAAACCGAT chr3R:20280652-20280772 26 1.08e-04 tatttttata cttttttt CCAGCTTAAC chr3L:21122764-21122884 45 1.08e-04 TTCTTGTGAT CTTTTTTT CCCCTGTAAG chr3R:21948795-21948915 58 1.08e-04 CGCTTTTAGC CTTTTTTT ACCGGCTGCC chr2R:18907112-18907232 108 1.93e-04 TTTTTATTGA TTTTCTTT ATTTG chr3L:15229556-15229676 97 1.93e-04 ATGCAACTGC TTTTGTTT TTTACTAATT chr3R:22140194-22140314 91 1.93e-04 ttgttttttg ttttgttt ttATTTCGTT chr3L:21892766-21892886 24 1.93e-04 TGCCAACTAT TTTTGTTT ACTATTTACT chr3L:19793018-19793138 86 1.93e-04 GCAAAAAtgg ttttcttt ttgtttcagt chrX:6708221-6708341 70 1.93e-04 TTTCTCTTCT TTTTCTTT TTTGGGATAT chrX:1119343-1119463 92 1.93e-04 ACTGTGCAAT TTTTCTTT CAGTGCACCT chrX:4965588-4965708 106 1.93e-04 TTTTCGCACA TTTTCTTT TATTTTT chr2R:18157821-18157941 97 1.93e-04 TTCTATATCT TTTTGTTT CAATTTTAAT chr3L:9847070-9847190 80 1.93e-04 AAGACATACG TTTTCTTT TTCCTACATA chrX:19485198-19485318 11 1.93e-04 TGCTCGGCGC TTTTGTTT TGGTTTTGgt chrX:13406413-13406533 23 1.93e-04 ttgttttttc ttttcttt ttCTATATAT chrX:5051171-5051291 97 1.93e-04 aagaaCTTCA TTTTGTTT GGTTTTGCAG chr3R:18914417-18914537 83 2.36e-04 AATATATATA TTTTTTGT TATATTAACT chr3R:18998464-18998584 57 2.36e-04 AGTCATCATA TTTTTTGT GGTCTCAGCG chrX:7097519-7097639 83 2.36e-04 AATGCTTGGT TTTTTTGT AATTGTACTA chr3L:16464004-16464124 109 2.78e-04 TTGTAATTAA TTTTTTTG AAGA chr3L:2817965-2818085 39 2.78e-04 TTCTTATTTA TTTTTTTG GCGAGTGAGT chrX:8839474-8839594 11 3.33e-04 ACCAATTACC CTTTGTTT AGACTTTAAA chr2R:13592931-13593051 78 3.76e-04 TTTTATAGTG TTTTTTTC GATAGACTTT chr3R:15808225-15808345 51 3.76e-04 ACACCCCCCA TTTTTTTC CAACTAAAAT chr3R:24970770-24970890 69 4.44e-04 ATTTCCCCAA TTTTATTT GTGACGCGCC chr2R:13478498-13478618 85 4.44e-04 CTCCTTAGCA TTTTATTT TCTACACCAA chrX:12239307-12239427 44 4.44e-04 AAACGCAAAC TTTTATTT AAAAAAAAAA chrX:15620528-15620648 106 4.44e-04 CAATGACTat ttttattt ttggttt chrX:5924533-5924653 108 4.44e-04 TTGGCATGTA TTTTATTT TTTAT chr2L:18005589-18005709 113 4.72e-04 CCTTTTCGGT CTTTTTGT chr2L:18752969-18753089 113 4.72e-04 CGAGTTTTTC CTTTTTGT chr3L:17504714-17504834 105 4.99e-04 TGTTTATTGA CTTTTTTG AAAAGTAG chrX:15639153-15639273 78 5.54e-04 ATCAATGGTA TTTTGTGT GGAAAACTTC chr3R:24152687-24152807 109 5.54e-04 AACATGCAGA TTTTCTGT AGTC chr2R:17843421-17843541 98 5.54e-04 ATTTCCACTA TTTTCTGT TGCGTTTCGC chr3L:18245820-18245940 56 6.24e-04 ATTAAAAATG TTTGTTTT GTAAATAATG chr3R:11860004-11860124 46 6.24e-04 GTTTTCTCCT CTTTTTTC GCCACTTTTT chr2L:6100496-6100616 107 6.24e-04 TGCAAGATCC CTTTTTTC GCCACT chr3R:18491279-18491399 102 6.24e-04 GAATATCTCC CTTTTTTC GAGTGTTTGC chrX:10741951-10742071 60 6.79e-04 GCCCATTTGC TTTTGTTG CCCTGCTGCA chr3L:5251611-5251731 1 6.79e-04 . TTTTCTTG TCTATATCTT chr3L:16002479-16002599 28 6.79e-04 TAAGCTACGC Ttttgttg ttcgtctgtt chr2R:7040019-7040139 55 8.47e-04 CTCTGTGTGG TTTATTTT GATTGGGGAA chr2L:10760209-10760329 66 8.47e-04 TGCTTAACGC TTTATTTT CATTAACATT chr2L:18943470-18943590 33 9.53e-04 GAAAAGCTTG TTGTTTTT GCTGTTGCTG chr2R:20166270-20166390 59 1.01e-03 GCAAATAATA CTTGTTTT GTAACAAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23728236-23728356 6.6e-05 45_[+1]_67 chr2L:7971551-7971671 6.6e-05 56_[+1]_56 chr3L:7134973-7135093 6.6e-05 103_[+1]_9 chr2R:18355943-18356063 6.6e-05 48_[+1]_64 chr3L:21202733-21202853 6.6e-05 53_[+1]_59 chr3R:11865252-11865372 6.6e-05 60_[+1]_52 chr3L:1367129-1367249 6.6e-05 59_[+1]_53 chrX:7980871-7980991 6.6e-05 97_[+1]_15 chrX:11569977-11570097 6.6e-05 73_[+1]_39 chr3R:30338790-30338910 6.6e-05 15_[+1]_97 chr3R:30005471-30005591 6.6e-05 64_[+1]_48 chr3R:18146813-18146933 6.6e-05 27_[+1]_85 chr2R:21531806-21531926 6.6e-05 84_[+1]_28 chr3R:21933986-21934106 6.6e-05 98_[+1]_14 chr2R:17871224-17871344 6.6e-05 75_[+1]_37 chrX:2648369-2648489 6.6e-05 76_[+1]_36 chr3L:5941270-5941390 6.6e-05 87_[+1]_25 chr4:829943-830063 6.6e-05 110_[+1]_2 chrX:13754740-13754860 6.6e-05 67_[+1]_45 chrX:6730729-6730849 6.6e-05 106_[+1]_6 chrX:6632017-6632137 6.6e-05 68_[+1]_44 chr3R:21634834-21634954 6.6e-05 86_[+1]_26 chr3L:5943694-5943814 6.6e-05 45_[+1]_67 chr2L:2727873-2727993 6.6e-05 97_[+1]_15 chr2R:15808756-15808876 6.6e-05 11_[+1]_101 chrX:11340310-11340430 6.6e-05 13_[+1]_99 chr2R:13023079-13023199 6.6e-05 54_[+1]_58 chr3L:18080148-18080268 6.6e-05 93_[+1]_19 chr3L:1441102-1441222 6.6e-05 52_[+1]_60 chr3R:30326753-30326873 6.6e-05 101_[+1]_11 chr3L:539867-539987 0.00011 34_[+1]_78 chr3L:8360423-8360543 0.00011 3_[+1]_109 chr3R:30773043-30773163 0.00011 112_[+1] chr3L:346788-346908 0.00011 81_[+1]_31 chrX:9344312-9344432 0.00011 101_[+1]_11 chrX:2976158-2976278 0.00011 41_[+1]_71 chr3R:20280652-20280772 0.00011 25_[+1]_87 chr3L:21122764-21122884 0.00011 44_[+1]_68 chr3R:21948795-21948915 0.00011 57_[+1]_55 chr2R:18907112-18907232 0.00019 107_[+1]_5 chr3L:15229556-15229676 0.00019 96_[+1]_16 chr3R:22140194-22140314 0.00019 90_[+1]_22 chr3L:21892766-21892886 0.00019 23_[+1]_89 chr3L:19793018-19793138 0.00019 85_[+1]_27 chrX:6708221-6708341 0.00019 69_[+1]_43 chrX:1119343-1119463 0.00019 91_[+1]_21 chrX:4965588-4965708 0.00019 105_[+1]_7 chr2R:18157821-18157941 0.00019 96_[+1]_16 chr3L:9847070-9847190 0.00019 79_[+1]_33 chrX:19485198-19485318 0.00019 10_[+1]_102 chrX:13406413-13406533 0.00019 22_[+1]_90 chrX:5051171-5051291 0.00019 96_[+1]_16 chr3R:18914417-18914537 0.00024 82_[+1]_30 chr3R:18998464-18998584 0.00024 56_[+1]_56 chrX:7097519-7097639 0.00024 82_[+1]_30 chr3L:16464004-16464124 0.00028 108_[+1]_4 chr3L:2817965-2818085 0.00028 38_[+1]_74 chrX:8839474-8839594 0.00033 10_[+1]_102 chr2R:13592931-13593051 0.00038 77_[+1]_35 chr3R:15808225-15808345 0.00038 50_[+1]_62 chr3R:24970770-24970890 0.00044 68_[+1]_44 chr2R:13478498-13478618 0.00044 84_[+1]_28 chrX:12239307-12239427 0.00044 43_[+1]_69 chrX:15620528-15620648 0.00044 105_[+1]_7 chrX:5924533-5924653 0.00044 107_[+1]_5 chr2L:18005589-18005709 0.00047 112_[+1] chr2L:18752969-18753089 0.00047 112_[+1] chr3L:17504714-17504834 0.0005 104_[+1]_8 chrX:15639153-15639273 0.00055 77_[+1]_35 chr3R:24152687-24152807 0.00055 108_[+1]_4 chr2R:17843421-17843541 0.00055 97_[+1]_15 chr3L:18245820-18245940 0.00062 55_[+1]_57 chr3R:11860004-11860124 0.00062 45_[+1]_67 chr2L:6100496-6100616 0.00062 106_[+1]_6 chr3R:18491279-18491399 0.00062 101_[+1]_11 chrX:10741951-10742071 0.00068 59_[+1]_53 chr3L:5251611-5251731 0.00068 [+1]_112 chr3L:16002479-16002599 0.00068 27_[+1]_85 chr2R:7040019-7040139 0.00085 54_[+1]_58 chr2L:10760209-10760329 0.00085 65_[+1]_47 chr2L:18943470-18943590 0.00095 32_[+1]_80 chr2R:20166270-20166390 0.001 58_[+1]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTT width=8 seqs=82 chr3R:23728236-23728356 ( 46) TTTTTTTT 1 chr2L:7971551-7971671 ( 57) TTTTTTTT 1 chr3L:7134973-7135093 ( 104) TTTTTTTT 1 chr2R:18355943-18356063 ( 49) TTTTTTTT 1 chr3L:21202733-21202853 ( 54) TTTTTTTT 1 chr3R:11865252-11865372 ( 61) TTTTTTTT 1 chr3L:1367129-1367249 ( 60) TTTTTTTT 1 chrX:7980871-7980991 ( 98) TTTTTTTT 1 chrX:11569977-11570097 ( 74) TTTTTTTT 1 chr3R:30338790-30338910 ( 16) TTTTTTTT 1 chr3R:30005471-30005591 ( 65) TTTTTTTT 1 chr3R:18146813-18146933 ( 28) TTTTTTTT 1 chr2R:21531806-21531926 ( 85) TTTTTTTT 1 chr3R:21933986-21934106 ( 99) TTTTTTTT 1 chr2R:17871224-17871344 ( 76) TTTTTTTT 1 chrX:2648369-2648489 ( 77) TTTTTTTT 1 chr3L:5941270-5941390 ( 88) TTTTTTTT 1 chr4:829943-830063 ( 111) TTTTTTTT 1 chrX:13754740-13754860 ( 68) TTTTTTTT 1 chrX:6730729-6730849 ( 107) TTTTTTTT 1 chrX:6632017-6632137 ( 69) TTTTTTTT 1 chr3R:21634834-21634954 ( 87) TTTTTTTT 1 chr3L:5943694-5943814 ( 46) TTTTTTTT 1 chr2L:2727873-2727993 ( 98) TTTTTTTT 1 chr2R:15808756-15808876 ( 12) TTTTTTTT 1 chrX:11340310-11340430 ( 14) TTTTTTTT 1 chr2R:13023079-13023199 ( 55) TTTTTTTT 1 chr3L:18080148-18080268 ( 94) TTTTTTTT 1 chr3L:1441102-1441222 ( 53) TTTTTTTT 1 chr3R:30326753-30326873 ( 102) TTTTTTTT 1 chr3L:539867-539987 ( 35) CTTTTTTT 1 chr3L:8360423-8360543 ( 4) CTTTTTTT 1 chr3R:30773043-30773163 ( 113) CTTTTTTT 1 chr3L:346788-346908 ( 82) CTTTTTTT 1 chrX:9344312-9344432 ( 102) CTTTTTTT 1 chrX:2976158-2976278 ( 42) CTTTTTTT 1 chr3R:20280652-20280772 ( 26) CTTTTTTT 1 chr3L:21122764-21122884 ( 45) CTTTTTTT 1 chr3R:21948795-21948915 ( 58) CTTTTTTT 1 chr2R:18907112-18907232 ( 108) TTTTCTTT 1 chr3L:15229556-15229676 ( 97) TTTTGTTT 1 chr3R:22140194-22140314 ( 91) TTTTGTTT 1 chr3L:21892766-21892886 ( 24) TTTTGTTT 1 chr3L:19793018-19793138 ( 86) TTTTCTTT 1 chrX:6708221-6708341 ( 70) TTTTCTTT 1 chrX:1119343-1119463 ( 92) TTTTCTTT 1 chrX:4965588-4965708 ( 106) TTTTCTTT 1 chr2R:18157821-18157941 ( 97) TTTTGTTT 1 chr3L:9847070-9847190 ( 80) TTTTCTTT 1 chrX:19485198-19485318 ( 11) TTTTGTTT 1 chrX:13406413-13406533 ( 23) TTTTCTTT 1 chrX:5051171-5051291 ( 97) TTTTGTTT 1 chr3R:18914417-18914537 ( 83) TTTTTTGT 1 chr3R:18998464-18998584 ( 57) TTTTTTGT 1 chrX:7097519-7097639 ( 83) TTTTTTGT 1 chr3L:16464004-16464124 ( 109) TTTTTTTG 1 chr3L:2817965-2818085 ( 39) TTTTTTTG 1 chrX:8839474-8839594 ( 11) CTTTGTTT 1 chr2R:13592931-13593051 ( 78) TTTTTTTC 1 chr3R:15808225-15808345 ( 51) TTTTTTTC 1 chr3R:24970770-24970890 ( 69) TTTTATTT 1 chr2R:13478498-13478618 ( 85) TTTTATTT 1 chrX:12239307-12239427 ( 44) TTTTATTT 1 chrX:15620528-15620648 ( 106) TTTTATTT 1 chrX:5924533-5924653 ( 108) TTTTATTT 1 chr2L:18005589-18005709 ( 113) CTTTTTGT 1 chr2L:18752969-18753089 ( 113) CTTTTTGT 1 chr3L:17504714-17504834 ( 105) CTTTTTTG 1 chrX:15639153-15639273 ( 78) TTTTGTGT 1 chr3R:24152687-24152807 ( 109) TTTTCTGT 1 chr2R:17843421-17843541 ( 98) TTTTCTGT 1 chr3L:18245820-18245940 ( 56) TTTGTTTT 1 chr3R:11860004-11860124 ( 46) CTTTTTTC 1 chr2L:6100496-6100616 ( 107) CTTTTTTC 1 chr3R:18491279-18491399 ( 102) CTTTTTTC 1 chrX:10741951-10742071 ( 60) TTTTGTTG 1 chr3L:5251611-5251731 ( 1) TTTTCTTG 1 chr3L:16002479-16002599 ( 28) TTTTGTTG 1 chr2R:7040019-7040139 ( 55) TTTATTTT 1 chr2L:10760209-10760329 ( 66) TTTATTTT 1 chr2L:18943470-18943590 ( 33) TTGTTTTT 1 chr2R:20166270-20166390 ( 59) CTTGTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.91657 E= 7.5e-007 -1300 9 -1300 140 -1300 -1300 -1300 174 -1300 -1300 -399 172 -367 -1300 -299 166 -235 -68 -67 121 -1300 -1300 -1300 174 -1300 -1300 -99 159 -1300 -168 -140 153 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 82 E= 7.5e-007 0.000000 0.207317 0.000000 0.792683 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.012195 0.987805 0.024390 0.000000 0.024390 0.951220 0.060976 0.121951 0.121951 0.695122 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.097561 0.902439 0.000000 0.060976 0.073171 0.865854 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 regular expression -------------------------------------------------------------------------------- [TC]TTTTTTT -------------------------------------------------------------------------------- Time 8.89 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAA MEME-2 width = 8 sites = 62 llr = 487 E-value = 5.4e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A aaaa79aa pos.-specific C ::::2::: probability G :::::1:: matrix T ::::1::: bits 2.4 2.1 1.9 1.7 *** * Relative 1.4 **** ** Entropy 1.2 **** *** (11.3 bits) 0.9 **** *** 0.7 **** *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7134973-7135093 7 8.75e-05 AGCCAT AAAAAAAA Tacaacacca chr3L:11442468-11442588 105 8.75e-05 Caaaaacaaa aaaaaaaa aaacgaat chr3L:9367580-9367700 56 8.75e-05 AAAAACAACG AAAAAAAA CCACCGACAC chr2R:16154050-16154170 57 8.75e-05 TCTGGCATGa aaaaaaaa gtaataaacg chr2L:9231825-9231945 57 8.75e-05 ACAAGAGCaa aaaaaaaa gaaaaaaaga chr2R:10548446-10548566 21 8.75e-05 aaacaaaaca aaaaaaaa acacgaaaaa chr3R:29726031-29726151 45 8.75e-05 GCAACAACGa aaaaaaaa aaaaaataga chr3R:8350004-8350124 50 8.75e-05 ATAAAGTGAA AAAAAAAA CACAAACGCA chrX:18544826-18544946 1 8.75e-05 . aaaaaaaa aaaaaaGACC chr3R:29250650-29250770 20 8.75e-05 CAAAGGAGGT aaaaaaaa caataaaaaa chr2R:17469791-17469911 53 8.75e-05 GCAAATACAG AAAAAAAA ATAGGTGAAA chr3R:13647144-13647264 71 8.75e-05 GTTATTCTCA AAAAAAAA GACAAAAAGA chrX:17806453-17806573 79 8.75e-05 aaaaatcgca aaaaaaaa atatataaag chr3L:16041735-16041855 40 8.75e-05 aaaaaaaaac aaaaaaaa acaaaaGCAA chr3L:6405034-6405154 58 8.75e-05 TGGCACTGCT AAAAAAAA GGGGGTGGCT chr2R:7764297-7764417 60 8.75e-05 CAGCAAATCG aaaaaaaa gcggcaaaca chrX:3175227-3175347 14 8.75e-05 CTTGCCGCaa aaaaaaaa aaaaagaaaa chrX:7097519-7097639 25 8.75e-05 GGCCAACAGC AAAAAAAA TAACATGTAT chr3R:9222546-9222666 57 8.75e-05 aagaagacag aaaaaaaa caacaGAAGC chr2R:18879238-18879358 77 8.75e-05 AAAAACGCGC AAAAAAAA GTTATAAGAA chrX:9344312-9344432 20 8.75e-05 taaaagacaa aaaaaaaa aaaTATATAT chrX:12239307-12239427 54 8.75e-05 TTTTATTTAA AAAAAAAA ATAAAAAGAA chr2L:3095519-3095639 87 8.75e-05 AAAAGGAAAA AAAAAAAA CGCAAAACAA chrX:4965588-4965708 53 8.75e-05 AAATAAGACA AAAAAAAA TTAAAGAGAG chr2R:19157686-19157806 75 8.75e-05 aaaaaagaaa aaaaaaaa gaaCGGAGCT chr2L:8002334-8002454 64 8.75e-05 CCAAAGTGCG AAAAAAAA GAAAACGCTG chrX:1080881-1081001 65 8.75e-05 ATACCTAAAA AAAAAAAA AGTATCTAAT chr2R:15906142-15906262 16 8.75e-05 caaaaaagaa aaaaaaaa aaggaaaatc chrX:17694332-17694452 86 8.75e-05 atacaaaaaa aaaaaaaa tacaaaataa chr2L:12543974-12544094 23 8.75e-05 TTCACAATGC AAAAAAAA TGGCAAGGGA chrX:17488515-17488635 29 8.75e-05 acgaaaagcg aaaaaaaa taaatgaaca chr3L:21237137-21237257 42 8.75e-05 aaaataatac aaaaaaaa cgaaacaaaa chr2R:19697507-19697627 20 8.75e-05 CCAAGATTGC AAAAAAAA AGAACCCAGC chr2R:7040019-7040139 97 1.42e-04 GGAAGAGAGA AAAACAAA ACTTTTCCCG chr3L:8360423-8360543 56 1.42e-04 TGCAAAGAAA AAAACAAA ACAGCGGCAG chr2R:11180826-11180946 50 1.42e-04 aaataaaaca aaaacaaa aaccaagaaa chr3L:19793018-19793138 60 1.42e-04 GGTCCAAACA AAAACAAA AGCGCGAAGC chr3L:11634677-11634797 42 1.42e-04 GTCAGAAGAA AAAACAAA ATAAAAATAT chr3L:19234487-19234607 50 1.42e-04 AACACAACAG AAAACAAA AATAAAATGC chrX:3189921-3190041 1 1.42e-04 . aaaacaaa aaaCTGTCAA chr3R:11859224-11859344 90 1.97e-04 CGGCaaacaa aaaaagaa acagaaactg chrX:11485300-11485420 7 1.97e-04 TCCTGA AAAAAGAA AAAAGAGTTT chrX:10801244-10801364 107 1.97e-04 aaaaaattga aaaaagaa gagaag chr3L:5251611-5251731 48 1.97e-04 AAAACATGGC AAAAAGAA ACAAAACTAA chrX:5051171-5051291 84 1.97e-04 tgcggagcag aaaaagaa CTTCATTTTG chr2L:843979-844099 18 2.81e-04 ACTACACGGA AAAATAAA TTGTGTGAAT chr3R:30833284-30833404 51 2.81e-04 ATTAAATTCA AAAATAAA TATATATATG chr3R:9389106-9389226 93 2.81e-04 TCCAATGAAG AAAATAAA AACCAATGAC chr3R:30344656-30344776 3 2.81e-04 CA AAAATAAA ATATAATATA chr2L:18005589-18005709 94 2.81e-04 CAATTTAATT AAAATAAA CCCTTTTCGG chr3R:23319006-23319126 113 2.81e-04 CCCTGGTGAA AAAATAAA chr2L:11014817-11014937 9 2.81e-04 AAAATACT AAAATAAA TTAATCAGTA chr2L:21004929-21005049 90 3.16e-04 TTGTACCTGA AAAACGAA AGCCTAAAAC chr3R:29280785-29280905 44 3.16e-04 TAAGTTTTGA AAAACGAA TATTTAAGGA chr2R:22571960-22572080 105 3.16e-04 TTTTATAGCa aaaacgaa acaaatgc chr3L:3225937-3226057 42 3.70e-04 gaaaaaatag aaaagaaa cggcgagcgg chr2L:16588930-16589050 97 3.70e-04 GTGTGCTTGG AAAAGAAA AAATTAGTCG chr3R:26442973-26443093 27 4.25e-04 aaaagacggc aaaaaaaG AGATGGGTAA chr3L:22109779-22109899 108 4.25e-04 AATGCCCGCC AAAAAAAG GGGCT chr2L:18344459-18344579 14 6.42e-04 AAAACACGTA GAAAAAAA TTGGGGTCAC chr2L:18943470-18943590 3 6.42e-04 GG AAAGAAAA CAGAAAAAGA chr2L:18831393-18831513 34 6.42e-04 GGATAAACAT AAACAAAA CCAAGACAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7134973-7135093 8.8e-05 6_[+2]_106 chr3L:11442468-11442588 8.8e-05 104_[+2]_8 chr3L:9367580-9367700 8.8e-05 55_[+2]_57 chr2R:16154050-16154170 8.8e-05 56_[+2]_56 chr2L:9231825-9231945 8.8e-05 56_[+2]_56 chr2R:10548446-10548566 8.8e-05 20_[+2]_92 chr3R:29726031-29726151 8.8e-05 44_[+2]_68 chr3R:8350004-8350124 8.8e-05 49_[+2]_63 chrX:18544826-18544946 8.8e-05 [+2]_112 chr3R:29250650-29250770 8.8e-05 19_[+2]_93 chr2R:17469791-17469911 8.8e-05 52_[+2]_60 chr3R:13647144-13647264 8.8e-05 70_[+2]_42 chrX:17806453-17806573 8.8e-05 78_[+2]_34 chr3L:16041735-16041855 8.8e-05 39_[+2]_73 chr3L:6405034-6405154 8.8e-05 57_[+2]_55 chr2R:7764297-7764417 8.8e-05 59_[+2]_53 chrX:3175227-3175347 8.8e-05 13_[+2]_99 chrX:7097519-7097639 8.8e-05 24_[+2]_88 chr3R:9222546-9222666 8.8e-05 56_[+2]_56 chr2R:18879238-18879358 8.8e-05 76_[+2]_36 chrX:9344312-9344432 8.8e-05 19_[+2]_93 chrX:12239307-12239427 8.8e-05 53_[+2]_59 chr2L:3095519-3095639 8.8e-05 86_[+2]_26 chrX:4965588-4965708 8.8e-05 52_[+2]_60 chr2R:19157686-19157806 8.8e-05 74_[+2]_38 chr2L:8002334-8002454 8.8e-05 63_[+2]_49 chrX:1080881-1081001 8.8e-05 64_[+2]_48 chr2R:15906142-15906262 8.8e-05 15_[+2]_97 chrX:17694332-17694452 8.8e-05 85_[+2]_27 chr2L:12543974-12544094 8.8e-05 22_[+2]_90 chrX:17488515-17488635 8.8e-05 28_[+2]_84 chr3L:21237137-21237257 8.8e-05 41_[+2]_71 chr2R:19697507-19697627 8.8e-05 19_[+2]_93 chr2R:7040019-7040139 0.00014 96_[+2]_16 chr3L:8360423-8360543 0.00014 55_[+2]_57 chr2R:11180826-11180946 0.00014 49_[+2]_63 chr3L:19793018-19793138 0.00014 59_[+2]_53 chr3L:11634677-11634797 0.00014 41_[+2]_71 chr3L:19234487-19234607 0.00014 49_[+2]_63 chrX:3189921-3190041 0.00014 [+2]_112 chr3R:11859224-11859344 0.0002 89_[+2]_23 chrX:11485300-11485420 0.0002 6_[+2]_106 chrX:10801244-10801364 0.0002 106_[+2]_6 chr3L:5251611-5251731 0.0002 47_[+2]_65 chrX:5051171-5051291 0.0002 83_[+2]_29 chr2L:843979-844099 0.00028 17_[+2]_95 chr3R:30833284-30833404 0.00028 50_[+2]_62 chr3R:9389106-9389226 0.00028 92_[+2]_20 chr3R:30344656-30344776 0.00028 2_[+2]_110 chr2L:18005589-18005709 0.00028 93_[+2]_19 chr3R:23319006-23319126 0.00028 112_[+2] chr2L:11014817-11014937 0.00028 8_[+2]_104 chr2L:21004929-21005049 0.00032 89_[+2]_23 chr3R:29280785-29280905 0.00032 43_[+2]_69 chr2R:22571960-22572080 0.00032 104_[+2]_8 chr3L:3225937-3226057 0.00037 41_[+2]_71 chr2L:16588930-16589050 0.00037 96_[+2]_16 chr3R:26442973-26443093 0.00042 26_[+2]_86 chr3L:22109779-22109899 0.00042 107_[+2]_5 chr2L:18344459-18344579 0.00064 13_[+2]_99 chr2L:18943470-18943590 0.00064 2_[+2]_110 chr2L:18831393-18831513 0.00064 33_[+2]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAA width=8 seqs=62 chr3L:7134973-7135093 ( 7) AAAAAAAA 1 chr3L:11442468-11442588 ( 105) AAAAAAAA 1 chr3L:9367580-9367700 ( 56) AAAAAAAA 1 chr2R:16154050-16154170 ( 57) AAAAAAAA 1 chr2L:9231825-9231945 ( 57) AAAAAAAA 1 chr2R:10548446-10548566 ( 21) AAAAAAAA 1 chr3R:29726031-29726151 ( 45) AAAAAAAA 1 chr3R:8350004-8350124 ( 50) AAAAAAAA 1 chrX:18544826-18544946 ( 1) AAAAAAAA 1 chr3R:29250650-29250770 ( 20) AAAAAAAA 1 chr2R:17469791-17469911 ( 53) AAAAAAAA 1 chr3R:13647144-13647264 ( 71) AAAAAAAA 1 chrX:17806453-17806573 ( 79) AAAAAAAA 1 chr3L:16041735-16041855 ( 40) AAAAAAAA 1 chr3L:6405034-6405154 ( 58) AAAAAAAA 1 chr2R:7764297-7764417 ( 60) AAAAAAAA 1 chrX:3175227-3175347 ( 14) AAAAAAAA 1 chrX:7097519-7097639 ( 25) AAAAAAAA 1 chr3R:9222546-9222666 ( 57) AAAAAAAA 1 chr2R:18879238-18879358 ( 77) AAAAAAAA 1 chrX:9344312-9344432 ( 20) AAAAAAAA 1 chrX:12239307-12239427 ( 54) AAAAAAAA 1 chr2L:3095519-3095639 ( 87) AAAAAAAA 1 chrX:4965588-4965708 ( 53) AAAAAAAA 1 chr2R:19157686-19157806 ( 75) AAAAAAAA 1 chr2L:8002334-8002454 ( 64) AAAAAAAA 1 chrX:1080881-1081001 ( 65) AAAAAAAA 1 chr2R:15906142-15906262 ( 16) AAAAAAAA 1 chrX:17694332-17694452 ( 86) AAAAAAAA 1 chr2L:12543974-12544094 ( 23) AAAAAAAA 1 chrX:17488515-17488635 ( 29) AAAAAAAA 1 chr3L:21237137-21237257 ( 42) AAAAAAAA 1 chr2R:19697507-19697627 ( 20) AAAAAAAA 1 chr2R:7040019-7040139 ( 97) AAAACAAA 1 chr3L:8360423-8360543 ( 56) AAAACAAA 1 chr2R:11180826-11180946 ( 50) AAAACAAA 1 chr3L:19793018-19793138 ( 60) AAAACAAA 1 chr3L:11634677-11634797 ( 42) AAAACAAA 1 chr3L:19234487-19234607 ( 50) AAAACAAA 1 chrX:3189921-3190041 ( 1) AAAACAAA 1 chr3R:11859224-11859344 ( 90) AAAAAGAA 1 chrX:11485300-11485420 ( 7) AAAAAGAA 1 chrX:10801244-10801364 ( 107) AAAAAGAA 1 chr3L:5251611-5251731 ( 48) AAAAAGAA 1 chrX:5051171-5051291 ( 84) AAAAAGAA 1 chr2L:843979-844099 ( 18) AAAATAAA 1 chr3R:30833284-30833404 ( 51) AAAATAAA 1 chr3R:9389106-9389226 ( 93) AAAATAAA 1 chr3R:30344656-30344776 ( 3) AAAATAAA 1 chr2L:18005589-18005709 ( 94) AAAATAAA 1 chr3R:23319006-23319126 ( 113) AAAATAAA 1 chr2L:11014817-11014937 ( 9) AAAATAAA 1 chr2L:21004929-21005049 ( 90) AAAACGAA 1 chr3R:29280785-29280905 ( 44) AAAACGAA 1 chr2R:22571960-22572080 ( 105) AAAACGAA 1 chr3L:3225937-3226057 ( 42) AAAAGAAA 1 chr2L:16588930-16589050 ( 97) AAAAGAAA 1 chr3R:26442973-26443093 ( 27) AAAAAAAG 1 chr3L:22109779-22109899 ( 108) AAAAAAAG 1 chr2L:18344459-18344579 ( 14) GAAAAAAA 1 chr2L:18943470-18943590 ( 3) AAAGAAAA 1 chr2L:18831393-18831513 ( 34) AAACAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1293 E= 5.4e-006 166 -1260 -358 -1260 169 -1260 -1260 -1260 169 -1260 -1260 -1260 164 -360 -358 -1260 116 -28 -258 -141 149 -1260 -59 -1260 169 -1260 -1260 -1260 164 -1260 -258 -1260 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 5.4e-006 0.983871 0.000000 0.016129 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.967742 0.016129 0.016129 0.000000 0.693548 0.161290 0.032258 0.112903 0.870968 0.000000 0.129032 0.000000 1.000000 0.000000 0.000000 0.000000 0.967742 0.000000 0.032258 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 regular expression -------------------------------------------------------------------------------- AAAAAAAA -------------------------------------------------------------------------------- Time 15.08 secs. ******************************************************************************** ******************************************************************************** MOTIF CAAAGTSC MEME-3 width = 8 sites = 25 llr = 232 E-value = 3.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAAGTSC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :7aa:::: pos.-specific C 92::::49 probability G 1:::a:61 matrix T :1:::a:: bits 2.4 * 2.1 * 1.9 * * * 1.7 * **** * Relative 1.4 * ****** Entropy 1.2 * ****** (13.4 bits) 0.9 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAAAGTGC consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTSC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:9231825-9231945 24 1.29e-05 GCCCAAGCGG CAAAGTGC AAATTGATAA chrX:16633627-16633747 79 1.29e-05 TAGGGGAGTC CAAAGTGC CAAAGTAGTG chr2R:7791633-7791753 26 1.29e-05 GCACAGGTTT CAAAGTGC AGCGATAAGA chr2L:8002334-8002454 55 1.29e-05 AGTTTGGCCC CAAAGTGC GAAAAAAAAG chrX:9139254-9139374 63 2.59e-05 CCGATAAATC CAAAGTCC GGCAGCAGCT chr3R:12406793-12406913 88 2.59e-05 GAGATGGGTG CAAAGTCC AAGACAGACC chr3L:20387962-20388082 53 2.59e-05 CGTGCACTTC CAAAGTCC AATTCGGTGC chrX:20166815-20166935 66 2.59e-05 GGGTTCGGTT CAAAGTCC GAACACCGGT chr2L:7207797-7207917 53 2.59e-05 TGGCACTGAC CAAAGTCC AGCACCTTAA chr3R:9389106-9389226 78 2.59e-05 ATTACAAAGT CAAAGTCC AATGAAGAAA chr3L:5251611-5251731 91 2.59e-05 GACAAGTCAG CAAAGTCC CATGATGATG chr3R:27706100-27706220 77 2.59e-05 TCAAGCTGGA CAAAGTCC GGATTGGGGA chr3L:21122764-21122884 99 2.59e-05 AAGATCTGTT CAAAGTCC AAAGCGCCTT chr3L:17914199-17914319 59 3.40e-05 CGTTGCATGG CCAAGTGC ACAACGCATT chr2R:7040019-7040139 9 3.40e-05 GCTCTGAC CCAAGTGC AACGCTCTCT chr2L:8812980-8813100 7 3.40e-05 ATCTGG CCAAGTGC AGGCCCCTTG chr2L:524580-524700 45 4.21e-05 TAGTCCAAGT CCAAGTCC GCATTTCGCG chrX:13951573-13951693 104 4.21e-05 TCAAGTGTAC CCAAGTCC GAGTGGAAG chr3R:30833284-30833404 93 5.46e-05 CAACTTTTCG CTAAGTGC ATTGAACTAA chrX:13754740-13754860 90 5.46e-05 TGCCACTTAC CTAAGTGC TTTTTGTTTT chr3R:31644476-31644596 87 5.46e-05 ACTTGAAACC CTAAGTGC ATAATTGACT chrX:10741951-10742071 76 9.28e-05 TGCCCTGCTG CAAAGTGG CATAAAACAG chrX:11569977-11570097 23 9.28e-05 GCCACTAGAC CAAAGTGG AGCCTGCTTT chr2R:17469791-17469911 92 9.28e-05 ACTGAAAAGT GAAAGTGC AGCATGGGTC chr3L:19793018-19793138 33 9.28e-05 GTGTGAGCGC GAAAGTGC GTGAGCGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTSC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:9231825-9231945 1.3e-05 23_[+3]_89 chrX:16633627-16633747 1.3e-05 78_[+3]_34 chr2R:7791633-7791753 1.3e-05 25_[+3]_87 chr2L:8002334-8002454 1.3e-05 54_[+3]_58 chrX:9139254-9139374 2.6e-05 62_[+3]_50 chr3R:12406793-12406913 2.6e-05 87_[+3]_25 chr3L:20387962-20388082 2.6e-05 52_[+3]_60 chrX:20166815-20166935 2.6e-05 65_[+3]_47 chr2L:7207797-7207917 2.6e-05 52_[+3]_60 chr3R:9389106-9389226 2.6e-05 77_[+3]_35 chr3L:5251611-5251731 2.6e-05 90_[+3]_22 chr3R:27706100-27706220 2.6e-05 76_[+3]_36 chr3L:21122764-21122884 2.6e-05 98_[+3]_14 chr3L:17914199-17914319 3.4e-05 58_[+3]_54 chr2R:7040019-7040139 3.4e-05 8_[+3]_104 chr2L:8812980-8813100 3.4e-05 6_[+3]_106 chr2L:524580-524700 4.2e-05 44_[+3]_68 chrX:13951573-13951693 4.2e-05 103_[+3]_9 chr3R:30833284-30833404 5.5e-05 92_[+3]_20 chrX:13754740-13754860 5.5e-05 89_[+3]_23 chr3R:31644476-31644596 5.5e-05 86_[+3]_26 chrX:10741951-10742071 9.3e-05 75_[+3]_37 chrX:11569977-11570097 9.3e-05 22_[+3]_90 chr2R:17469791-17469911 9.3e-05 91_[+3]_21 chr3L:19793018-19793138 9.3e-05 32_[+3]_80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTSC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAAGTSC width=8 seqs=25 chr2L:9231825-9231945 ( 24) CAAAGTGC 1 chrX:16633627-16633747 ( 79) CAAAGTGC 1 chr2R:7791633-7791753 ( 26) CAAAGTGC 1 chr2L:8002334-8002454 ( 55) CAAAGTGC 1 chrX:9139254-9139374 ( 63) CAAAGTCC 1 chr3R:12406793-12406913 ( 88) CAAAGTCC 1 chr3L:20387962-20388082 ( 53) CAAAGTCC 1 chrX:20166815-20166935 ( 66) CAAAGTCC 1 chr2L:7207797-7207917 ( 53) CAAAGTCC 1 chr3R:9389106-9389226 ( 78) CAAAGTCC 1 chr3L:5251611-5251731 ( 91) CAAAGTCC 1 chr3R:27706100-27706220 ( 77) CAAAGTCC 1 chr3L:21122764-21122884 ( 99) CAAAGTCC 1 chr3L:17914199-17914319 ( 59) CCAAGTGC 1 chr2R:7040019-7040139 ( 9) CCAAGTGC 1 chr2L:8812980-8813100 ( 7) CCAAGTGC 1 chr2L:524580-524700 ( 45) CCAAGTCC 1 chrX:13951573-13951693 ( 104) CCAAGTCC 1 chr3R:30833284-30833404 ( 93) CTAAGTGC 1 chrX:13754740-13754860 ( 90) CTAAGTGC 1 chr3R:31644476-31644596 ( 87) CTAAGTGC 1 chrX:10741951-10742071 ( 76) CAAAGTGG 1 chrX:11569977-11570097 ( 23) CAAAGTGG 1 chr2R:17469791-17469911 ( 92) GAAAGTGC 1 chr3L:19793018-19793138 ( 33) GAAAGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTSC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6312 E= 3.0e-001 -1129 224 -127 -1129 113 3 -1129 -132 168 -1129 -1129 -1129 168 -1129 -1129 -1129 -1129 -1129 237 -1129 -1129 -1129 -1129 174 -1129 117 153 -1129 -1129 224 -127 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTSC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 3.0e-001 0.000000 0.920000 0.080000 0.000000 0.680000 0.200000 0.000000 0.120000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.440000 0.560000 0.000000 0.000000 0.920000 0.080000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTSC MEME-3 regular expression -------------------------------------------------------------------------------- C[AC]AAGT[GC]C -------------------------------------------------------------------------------- Time 21.15 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAAMMAV MEME-4 width = 8 sites = 56 llr = 453 E-value = 3.4e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAAMMAV MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a867a3 pos.-specific C :a::43:3 probability G a::2:::3 matrix T :::::::: bits 2.4 ** 2.1 ** 1.9 ** 1.7 *** * Relative 1.4 *** * Entropy 1.2 *** * (11.7 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCAAAAAA consensus GCC G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAMMAV MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7971551-7971671 98 2.68e-05 GAGTCCTTCC GCAACAAC CACTGTATTG chr3L:7134973-7135093 51 2.68e-05 agcggcagca gcaacaac cacaaACGTT chrX:10741951-10742071 96 2.68e-05 TAAAACAGAT GCAACAAC ACGGCGAAAA chr3R:29726031-29726151 35 2.68e-05 TTAGGCCGTG GCAACAAC Gaaaaaaaaa chr2L:21004929-21005049 37 2.68e-05 CAACAAAATA GCAACAAC TCTGGGCAAC chr3R:9222546-9222666 32 2.68e-05 aaaaagaaca gcaacaac caacaacaag chr2R:7791633-7791753 90 2.68e-05 GCCAGAGTTG GCAacaac aaacgtacat chr3L:10531150-10531270 100 2.68e-05 caacaagaag gcaacaaG CCACAGATaa chrX:10479092-10479212 28 2.68e-05 CTATGACTTG GCAACAAG AGTTGCAGCC chr2R:10441136-10441256 74 2.68e-05 GCCCTAACAA GCAACAAG GAGCAGAGTC chrX:11545132-11545252 43 2.68e-05 CAGCCcaaca gcaacaac aacaacaCTT chr2R:8957909-8958029 66 2.68e-05 GCATTTACCA GCAACAAC AAGCCCGTCT chr3R:28662134-28662254 77 2.68e-05 CTAAGGAGTC GCAACAAC AAGCGGGGTG chr3L:11442468-11442588 94 6.97e-05 CACACTAAAG GCaaaaac aaaaaaaaaa chr2L:14506841-14506961 11 6.97e-05 CCCGGCAAAG GCAAAAAG CCGGGAAGAT chr3L:19793018-19793138 8 6.97e-05 AACAAAT GCAAAAAG TTTCTGCGTG chr2L:3095519-3095639 57 6.97e-05 AATGCTAACC GCAAAAAC AAAAAGGCAA chrX:2648369-2648489 7 6.97e-05 CCAAAG GCAAAAAG TCGGAGTCGA chrX:6708221-6708341 96 6.97e-05 ATGATTTTTT GCAAAAAG TTCTCGGGAG chrX:1966089-1966209 38 6.97e-05 GTGCGCCGTT GCAAAAAG GCAaacagaa chr2R:19157686-19157806 40 6.97e-05 GTGCAGGCTA GCaaaaac aaaaaaaggg chrX:5051171-5051291 41 6.97e-05 caaagccaaa gcaaaaag aaacggaaaa chr3R:12406793-12406913 46 8.65e-05 ATCGCCGGAC GCAACCAG GAGAAGCTGC chr3L:539867-539987 112 1.13e-04 TACCCCGGCT GCAAACAG T chr3L:11557301-11557421 1 1.13e-04 . GCAAACAC CGATAGGCAG chr2R:15664548-15664668 81 1.13e-04 TGACTCTCCC GCAAACAC ACACTCGCAC chr2R:7764297-7764417 71 1.13e-04 aaaaaaagcg gcaaacac aaataaagaa chr2L:14681766-14681886 93 1.13e-04 ATCGAAAATA GCAAACAG TTTACGGCGA chr2R:19697507-19697627 63 1.13e-04 GGGAAAGATA GCaaacag aaatctaaaa chr3L:2817965-2818085 107 1.35e-04 GCGAAGCTCG GCAACAAA GCATAA chr3R:13647144-13647264 92 1.35e-04 AAAAAGAATT GCAACAAA CTAGACTAgt chr3L:6405034-6405154 36 1.35e-04 CGTGAAAACC GCAACAAA AACGTGGCAC chr3L:9367580-9367700 84 1.69e-04 TTCAAACAAT GCAAAAAA AAAAAAGAGA chr2R:10548446-10548566 6 1.69e-04 AGCAT Gcaaaaaa caaaacaaaa chrX:17806453-17806573 107 1.69e-04 aaacgaaagc gcaaaaaa aaatac chr3L:16041735-16041855 23 1.69e-04 ATACAGTGCA GCaaaaaa aaaaaaaaca chr2R:15906142-15906262 46 1.69e-04 aacaaaagct gcaaaaaa aaaTCTGCAA chrX:17694332-17694452 42 1.69e-04 GGCAATTAGC GCAAAAAA AACGCACGAA chr3R:8939804-8939924 4 2.21e-04 CGG GCAAACAA CCAACAATTT chr3R:11859224-11859344 82 2.21e-04 AAAAGCATCG GCaaacaa aaaaagaaac chrX:3175227-3175347 53 2.21e-04 gaaaaacaca gcaaacaa caaaaTTATA chr2R:18879238-18879358 23 2.21e-04 TTCTTCAACA GCAAACAA ACGAAAAAAG chrX:15620528-15620648 32 2.21e-04 TTTGGAACTG Gcagcaag caacagcgac chr3L:19234487-19234607 66 2.21e-04 AAAATAAAAT GCAAACAA CGGAAAAGCG chr3L:18889378-18889498 38 2.47e-04 GCTTGGGGCA GCAGAAAC GGCAAGAACA chrX:18544826-18544946 101 2.47e-04 AGCCGCAGAA GCAGAAAG AGACGAAGCA chr2L:524580-524700 69 2.58e-04 CGCGTCCATG GCAGCCAG CTTTCAGTTG chr2R:21386699-21386819 46 2.58e-04 GGAACGAGAT GCAGCCAG CTTTAACAGC chr3R:11865252-11865372 73 2.75e-04 TTTTTTTTGC GCAGACAC AGCAGGGGAG chr3R:8350004-8350124 65 2.75e-04 AAACACAAAC GCAGACAG CGAACTTTGG chr2R:22596900-22597020 88 2.75e-04 GAAGTCATTC GCAGACAG TGTGGGTGGA chr2R:13468915-13469035 7 2.88e-04 gcagca gcagcaaa atcagcagaa chr2R:17843421-17843541 11 2.88e-04 CTTTGCGTTG GCAGCAAA CTTTTCATTC chr2R:11180826-11180946 26 3.09e-04 aataaagcca gcagaaaa agaaaaaaat chr2L:5494145-5494265 95 3.18e-04 CATTAATTAT GCAGCCAA AGTTAACAAT chr3L:8360423-8360543 70 3.31e-04 CAAAACAGCG GCAGACAA ATAAAATGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAMMAV MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7971551-7971671 2.7e-05 97_[+4]_15 chr3L:7134973-7135093 2.7e-05 50_[+4]_62 chrX:10741951-10742071 2.7e-05 95_[+4]_17 chr3R:29726031-29726151 2.7e-05 34_[+4]_78 chr2L:21004929-21005049 2.7e-05 36_[+4]_76 chr3R:9222546-9222666 2.7e-05 31_[+4]_81 chr2R:7791633-7791753 2.7e-05 89_[+4]_23 chr3L:10531150-10531270 2.7e-05 99_[+4]_13 chrX:10479092-10479212 2.7e-05 27_[+4]_85 chr2R:10441136-10441256 2.7e-05 73_[+4]_39 chrX:11545132-11545252 2.7e-05 42_[+4]_70 chr2R:8957909-8958029 2.7e-05 65_[+4]_47 chr3R:28662134-28662254 2.7e-05 76_[+4]_36 chr3L:11442468-11442588 7e-05 93_[+4]_19 chr2L:14506841-14506961 7e-05 10_[+4]_102 chr3L:19793018-19793138 7e-05 7_[+4]_105 chr2L:3095519-3095639 7e-05 56_[+4]_56 chrX:2648369-2648489 7e-05 6_[+4]_106 chrX:6708221-6708341 7e-05 95_[+4]_17 chrX:1966089-1966209 7e-05 37_[+4]_75 chr2R:19157686-19157806 7e-05 39_[+4]_73 chrX:5051171-5051291 7e-05 40_[+4]_72 chr3R:12406793-12406913 8.6e-05 45_[+4]_67 chr3L:539867-539987 0.00011 111_[+4]_1 chr3L:11557301-11557421 0.00011 [+4]_112 chr2R:15664548-15664668 0.00011 80_[+4]_32 chr2R:7764297-7764417 0.00011 70_[+4]_42 chr2L:14681766-14681886 0.00011 92_[+4]_20 chr2R:19697507-19697627 0.00011 62_[+4]_50 chr3L:2817965-2818085 0.00013 106_[+4]_6 chr3R:13647144-13647264 0.00013 91_[+4]_21 chr3L:6405034-6405154 0.00013 35_[+4]_77 chr3L:9367580-9367700 0.00017 83_[+4]_29 chr2R:10548446-10548566 0.00017 5_[+4]_107 chrX:17806453-17806573 0.00017 106_[+4]_6 chr3L:16041735-16041855 0.00017 22_[+4]_90 chr2R:15906142-15906262 0.00017 45_[+4]_67 chrX:17694332-17694452 0.00017 41_[+4]_71 chr3R:8939804-8939924 0.00022 3_[+4]_109 chr3R:11859224-11859344 0.00022 81_[+4]_31 chrX:3175227-3175347 0.00022 52_[+4]_60 chr2R:18879238-18879358 0.00022 22_[+4]_90 chrX:15620528-15620648 0.00022 31_[+4]_81 chr3L:19234487-19234607 0.00022 65_[+4]_47 chr3L:18889378-18889498 0.00025 37_[+4]_75 chrX:18544826-18544946 0.00025 100_[+4]_12 chr2L:524580-524700 0.00026 68_[+4]_44 chr2R:21386699-21386819 0.00026 45_[+4]_67 chr3R:11865252-11865372 0.00027 72_[+4]_40 chr3R:8350004-8350124 0.00027 64_[+4]_48 chr2R:22596900-22597020 0.00027 87_[+4]_25 chr2R:13468915-13469035 0.00029 6_[+4]_106 chr2R:17843421-17843541 0.00029 10_[+4]_102 chr2R:11180826-11180946 0.00031 25_[+4]_87 chr2L:5494145-5494265 0.00032 94_[+4]_18 chr3L:8360423-8360543 0.00033 69_[+4]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAMMAV MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAAMMAV width=8 seqs=56 chr2L:7971551-7971671 ( 98) GCAACAAC 1 chr3L:7134973-7135093 ( 51) GCAACAAC 1 chrX:10741951-10742071 ( 96) GCAACAAC 1 chr3R:29726031-29726151 ( 35) GCAACAAC 1 chr2L:21004929-21005049 ( 37) GCAACAAC 1 chr3R:9222546-9222666 ( 32) GCAACAAC 1 chr2R:7791633-7791753 ( 90) GCAACAAC 1 chr3L:10531150-10531270 ( 100) GCAACAAG 1 chrX:10479092-10479212 ( 28) GCAACAAG 1 chr2R:10441136-10441256 ( 74) GCAACAAG 1 chrX:11545132-11545252 ( 43) GCAACAAC 1 chr2R:8957909-8958029 ( 66) GCAACAAC 1 chr3R:28662134-28662254 ( 77) GCAACAAC 1 chr3L:11442468-11442588 ( 94) GCAAAAAC 1 chr2L:14506841-14506961 ( 11) GCAAAAAG 1 chr3L:19793018-19793138 ( 8) GCAAAAAG 1 chr2L:3095519-3095639 ( 57) GCAAAAAC 1 chrX:2648369-2648489 ( 7) GCAAAAAG 1 chrX:6708221-6708341 ( 96) GCAAAAAG 1 chrX:1966089-1966209 ( 38) GCAAAAAG 1 chr2R:19157686-19157806 ( 40) GCAAAAAC 1 chrX:5051171-5051291 ( 41) GCAAAAAG 1 chr3R:12406793-12406913 ( 46) GCAACCAG 1 chr3L:539867-539987 ( 112) GCAAACAG 1 chr3L:11557301-11557421 ( 1) GCAAACAC 1 chr2R:15664548-15664668 ( 81) GCAAACAC 1 chr2R:7764297-7764417 ( 71) GCAAACAC 1 chr2L:14681766-14681886 ( 93) GCAAACAG 1 chr2R:19697507-19697627 ( 63) GCAAACAG 1 chr3L:2817965-2818085 ( 107) GCAACAAA 1 chr3R:13647144-13647264 ( 92) GCAACAAA 1 chr3L:6405034-6405154 ( 36) GCAACAAA 1 chr3L:9367580-9367700 ( 84) GCAAAAAA 1 chr2R:10548446-10548566 ( 6) GCAAAAAA 1 chrX:17806453-17806573 ( 107) GCAAAAAA 1 chr3L:16041735-16041855 ( 23) GCAAAAAA 1 chr2R:15906142-15906262 ( 46) GCAAAAAA 1 chrX:17694332-17694452 ( 42) GCAAAAAA 1 chr3R:8939804-8939924 ( 4) GCAAACAA 1 chr3R:11859224-11859344 ( 82) GCAAACAA 1 chrX:3175227-3175347 ( 53) GCAAACAA 1 chr2R:18879238-18879358 ( 23) GCAAACAA 1 chrX:15620528-15620648 ( 32) GCAGCAAG 1 chr3L:19234487-19234607 ( 66) GCAAACAA 1 chr3L:18889378-18889498 ( 38) GCAGAAAC 1 chrX:18544826-18544946 ( 101) GCAGAAAG 1 chr2L:524580-524700 ( 69) GCAGCCAG 1 chr2R:21386699-21386819 ( 46) GCAGCCAG 1 chr3R:11865252-11865372 ( 73) GCAGACAC 1 chr3R:8350004-8350124 ( 65) GCAGACAG 1 chr2R:22596900-22597020 ( 88) GCAGACAG 1 chr2R:13468915-13469035 ( 7) GCAGCAAA 1 chr2R:17843421-17843541 ( 11) GCAGCAAA 1 chr2R:11180826-11180946 ( 26) GCAGAAAA 1 chr2L:5494145-5494265 ( 95) GCAGCCAA 1 chr3L:8360423-8360543 ( 70) GCAGACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAMMAV MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1998 E= 3.4e-006 -1245 -1245 237 -1245 -1245 236 -1245 -1245 169 -1245 -1245 -1245 130 -1245 26 -1245 92 107 -1245 -1245 109 80 -1245 -1245 169 -1245 -1245 -1245 13 72 81 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAMMAV MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 3.4e-006 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.767857 0.000000 0.232143 0.000000 0.589286 0.410714 0.000000 0.000000 0.660714 0.339286 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.339286 0.321429 0.339286 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAMMAV MEME-4 regular expression -------------------------------------------------------------------------------- GCA[AG][AC][AC]A[AGC] -------------------------------------------------------------------------------- Time 27.16 secs. ******************************************************************************** ******************************************************************************** MOTIF GVACTTTG MEME-5 width = 8 sites = 25 llr = 228 E-value = 1.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GVACTTTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :2a::::: pos.-specific C :3:a::1: probability G a3:::::a matrix T :1::aa9: bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * ** * Relative 1.4 * **** * Entropy 1.2 * ****** (13.2 bits) 0.9 * ****** 0.7 * ****** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel GCACTTTG consensus G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVACTTTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:25493951-25494071 49 2.40e-05 AAGACTAAGT GGACTTTG GAACTGGTTA chr3R:8939804-8939924 104 2.40e-05 TGTGCGTTTT GGACTTTG CCTGAACTT chr2R:24985723-24985843 92 2.40e-05 GATTTGCTTT GCACTTTG TCTCGCGGGT chr3R:20556849-20556969 63 2.40e-05 CATTCCAACT GGACTTTG TACCCCCTTG chr2R:22596900-22597020 62 2.40e-05 CTATCGCTAT GGACTTTG GACATGGCGA chr2L:2802644-2802764 7 2.40e-05 GTAAGT GGACTTTG GTCCCACCAA chr2R:22571960-22572080 72 2.40e-05 ACTGAACATT GGACTTTG ATCGTTGGCC chrX:11545132-11545252 65 2.40e-05 acaCTTAGAT GCACTTTG GGCCCAGACC chrX:17694332-17694452 11 2.40e-05 GTCACACTTT GCACTTTG CCTTCGCCAT chrX:13406413-13406533 70 2.40e-05 GCTGGCACTT GGACTTTG CACTCCGGTG chr3L:21237137-21237257 111 2.40e-05 ATTAGCCAGC GCACTTTG TG chr3R:8350004-8350124 74 4.31e-05 CGCAGACAGC GAACTTTG GACACAGACA chr2L:9949401-9949521 8 4.31e-05 TGGGCAT GAACTTTG GTCTAAGCTG chr3L:11557301-11557421 41 4.31e-05 GCTGTTTGGC GAACTTTG CCCGCTGTCA chr3L:5141381-5141501 84 4.31e-05 ATCGAAACTT GAACTTTG ACCACTTCCA chr3R:21634834-21634954 5 4.31e-05 GGAA GAACTTTG gcccctgcgc chr2L:131461-131581 67 4.31e-05 TGTATATAGT GAACTTTG TACCAGGCGT chr2L:2806354-2806474 50 6.16e-05 TCAAGCGGCT GTACTTTG CACCTCCAAT chr3L:13487069-13487189 59 6.16e-05 TCTGGCTGCT GTACTTTG GTCATTGCCG chr2L:2519370-2519490 113 6.16e-05 ATTAGTAAAT GTACTTTG chrX:20166815-20166935 13 7.72e-05 TAAGTATCGG GGACTTCG ATAATCCGAC chrX:15077825-15077945 79 7.72e-05 GTGTATGGGG GCACTTCG ATTATCAATG chr3R:19074346-19074466 33 9.27e-05 TGAAAGAAAT GCACTTGG AAGTCGTATT chr3R:19255333-19255453 47 1.21e-04 GCCAATCGAT GCACTGTG AAAAAATGTG chr3R:30326753-30326873 43 1.44e-04 TGCAACGTTT GCTCTTTG TCTGCGCTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVACTTTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:25493951-25494071 2.4e-05 48_[+5]_64 chr3R:8939804-8939924 2.4e-05 103_[+5]_9 chr2R:24985723-24985843 2.4e-05 91_[+5]_21 chr3R:20556849-20556969 2.4e-05 62_[+5]_50 chr2R:22596900-22597020 2.4e-05 61_[+5]_51 chr2L:2802644-2802764 2.4e-05 6_[+5]_106 chr2R:22571960-22572080 2.4e-05 71_[+5]_41 chrX:11545132-11545252 2.4e-05 64_[+5]_48 chrX:17694332-17694452 2.4e-05 10_[+5]_102 chrX:13406413-13406533 2.4e-05 69_[+5]_43 chr3L:21237137-21237257 2.4e-05 110_[+5]_2 chr3R:8350004-8350124 4.3e-05 73_[+5]_39 chr2L:9949401-9949521 4.3e-05 7_[+5]_105 chr3L:11557301-11557421 4.3e-05 40_[+5]_72 chr3L:5141381-5141501 4.3e-05 83_[+5]_29 chr3R:21634834-21634954 4.3e-05 4_[+5]_108 chr2L:131461-131581 4.3e-05 66_[+5]_46 chr2L:2806354-2806474 6.2e-05 49_[+5]_63 chr3L:13487069-13487189 6.2e-05 58_[+5]_54 chr2L:2519370-2519490 6.2e-05 112_[+5] chrX:20166815-20166935 7.7e-05 12_[+5]_100 chrX:15077825-15077945 7.7e-05 78_[+5]_34 chr3R:19074346-19074466 9.3e-05 32_[+5]_80 chr3R:19255333-19255453 0.00012 46_[+5]_66 chr3R:30326753-30326873 0.00014 42_[+5]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVACTTTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GVACTTTG width=8 seqs=25 chr3R:25493951-25494071 ( 49) GGACTTTG 1 chr3R:8939804-8939924 ( 104) GGACTTTG 1 chr2R:24985723-24985843 ( 92) GCACTTTG 1 chr3R:20556849-20556969 ( 63) GGACTTTG 1 chr2R:22596900-22597020 ( 62) GGACTTTG 1 chr2L:2802644-2802764 ( 7) GGACTTTG 1 chr2R:22571960-22572080 ( 72) GGACTTTG 1 chrX:11545132-11545252 ( 65) GCACTTTG 1 chrX:17694332-17694452 ( 11) GCACTTTG 1 chrX:13406413-13406533 ( 70) GGACTTTG 1 chr3L:21237137-21237257 ( 111) GCACTTTG 1 chr3R:8350004-8350124 ( 74) GAACTTTG 1 chr2L:9949401-9949521 ( 8) GAACTTTG 1 chr3L:11557301-11557421 ( 41) GAACTTTG 1 chr3L:5141381-5141501 ( 84) GAACTTTG 1 chr3R:21634834-21634954 ( 5) GAACTTTG 1 chr2L:131461-131581 ( 67) GAACTTTG 1 chr2L:2806354-2806474 ( 50) GTACTTTG 1 chr3L:13487069-13487189 ( 59) GTACTTTG 1 chr2L:2519370-2519490 ( 113) GTACTTTG 1 chrX:20166815-20166935 ( 13) GGACTTCG 1 chrX:15077825-15077945 ( 79) GCACTTCG 1 chr3R:19074346-19074466 ( 33) GCACTTGG 1 chr3R:19255333-19255453 ( 47) GCACTGTG 1 chr3R:30326753-30326873 ( 43) GCTCTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVACTTTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.84894 E= 1.8e+001 -1129 -1129 237 -1129 -37 71 72 -132 163 -1129 -1129 -290 -1129 236 -1129 -1129 -1129 -1129 -1129 174 -1129 -1129 -227 168 -1129 -129 -227 155 -1129 -1129 237 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVACTTTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.8e+001 0.000000 0.000000 1.000000 0.000000 0.240000 0.320000 0.320000 0.120000 0.960000 0.000000 0.000000 0.040000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.040000 0.960000 0.000000 0.080000 0.040000 0.880000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVACTTTG MEME-5 regular expression -------------------------------------------------------------------------------- G[CGA]ACTTTG -------------------------------------------------------------------------------- Time 33.06 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:19697507-19697627 2.47e-02 19_[+2(8.75e-05)]_93 chr2R:24141771-24141891 7.19e-01 120 chr2L:18752969-18753089 6.02e-01 120 chr3L:17305502-17305622 6.10e-01 120 chr3L:6584495-6584615 2.03e-01 120 chr3L:21237137-21237257 2.80e-03 41_[+2(8.75e-05)]_61_[+5(2.40e-05)]_\ 2 chr2L:10760209-10760329 3.77e-01 120 chr3R:30326753-30326873 4.54e-02 101_[+1(6.56e-05)]_11 chr2R:18569217-18569337 5.50e-01 120 chrX:5924533-5924653 2.46e-01 120 chr2R:13463435-13463555 5.76e-01 120 chrX:5051171-5051291 1.27e-03 40_[+4(6.97e-05)]_72 chr3L:1441102-1441222 2.36e-01 47_[+1(6.56e-05)]_65 chrX:3189921-3190041 7.15e-02 120 chr3R:28662134-28662254 1.58e-01 76_[+4(2.68e-05)]_15_[+4(2.68e-05)]_\ 13 chr3L:21894239-21894359 9.10e-01 120 chrX:13406413-13406533 9.78e-03 69_[+5(2.40e-05)]_43 chr3R:27088904-27089024 5.25e-01 120 chrX:17488515-17488635 5.11e-02 28_[+2(8.75e-05)]_84 chr3L:6355089-6355209 5.18e-01 120 chr2R:8957909-8958029 9.83e-02 65_[+4(2.68e-05)]_47 chr3L:18080148-18080268 3.96e-02 71_[+1(6.56e-05)]_4_[+1(6.56e-05)]_\ [+1(6.56e-05)]_21 chr3R:28934477-28934597 4.43e-01 120 chr2R:13023079-13023199 1.75e-02 53_[+1(6.56e-05)]_2_[+1(6.56e-05)]_\ 49 chr2L:12543974-12544094 2.42e-02 22_[+2(8.75e-05)]_90 chrX:17694332-17694452 1.97e-04 10_[+5(2.40e-05)]_25_[+2(8.75e-05)]_\ 28_[+2(8.75e-05)]_33 chr3R:15808225-15808345 3.79e-01 120 chrX:6745683-6745803 4.11e-01 120 chr2R:14083103-14083223 8.64e-01 120 chr3L:590040-590160 4.81e-01 120 chr3L:13180539-13180659 6.68e-01 120 chrX:11340310-11340430 4.21e-02 5_[+1(6.56e-05)]_[+1(6.56e-05)]_37_\ [+1(6.56e-05)]_54 chr2R:15906142-15906262 5.00e-02 13_[+2(8.75e-05)]_26_[+2(8.75e-05)]_\ 65 chr2R:20166270-20166390 3.47e-01 120 chrX:11545132-11545252 1.60e-04 42_[+4(2.68e-05)]_14_[+5(2.40e-05)]_\ 27_[+2(8.75e-05)]_[+2(8.75e-05)]_5 chr3L:19213277-19213397 1.86e-01 120 chr3L:14462498-14462618 1.28e-01 120 chr2L:11014817-11014937 2.48e-01 120 chrX:12914016-12914136 8.35e-01 120 chr2R:17843421-17843541 4.76e-02 120 chr2R:10441136-10441256 1.62e-02 73_[+4(2.68e-05)]_39 chrX:1080881-1081001 3.09e-02 60_[+2(8.75e-05)]_52 chr2R:15808756-15808876 7.76e-02 9_[+1(6.56e-05)]_103 chr3R:18491279-18491399 3.49e-01 120 chr3R:19070691-19070811 9.11e-01 120 chr3L:19234487-19234607 2.03e-03 120 chrX:18800317-18800437 6.35e-01 120 chrX:19485198-19485318 4.78e-01 120 chr2L:8002334-8002454 5.85e-04 54_[+3(1.29e-05)]_1_[+2(8.75e-05)]_\ 14_[+3(2.59e-05)]_27 chr3L:14649249-14649369 1.45e-01 120 chr3R:21948795-21948915 1.32e-01 120 chrX:15620528-15620648 1.18e-01 120 chr3R:26502185-26502305 1.59e-01 120 chr3L:4346526-4346646 5.55e-01 120 chr2R:21783618-21783738 3.91e-01 120 chr3R:6141851-6141971 2.51e-01 120 chr3L:6272325-6272445 4.39e-01 120 chr3L:9847070-9847190 1.64e-01 120 chr3L:7225494-7225614 2.28e-01 120 chrX:10479092-10479212 1.17e-01 27_[+4(2.68e-05)]_85 chr2R:11072724-11072844 3.22e-01 120 chr2L:2727873-2727993 8.01e-02 96_[+1(6.56e-05)]_16 chr2R:19157686-19157806 1.73e-02 39_[+4(6.97e-05)]_24_[+2(8.75e-05)]_\ 41 chr3L:5943694-5943814 1.66e-01 44_[+1(6.56e-05)]_3_[+1(6.56e-05)]_\ 57 chr2L:131461-131581 5.56e-03 66_[+5(4.31e-05)]_46 chr3L:18096836-18096956 8.66e-01 120 chr2R:18157821-18157941 1.05e-01 120 chr3L:16803349-16803469 9.79e-01 120 chrX:4965588-4965708 1.17e-02 26_[+2(8.75e-05)]_17_[+2(8.75e-05)]_\ 61 chr3R:21634834-21634954 1.42e-02 4_[+5(4.31e-05)]_74_[+1(6.56e-05)]_\ 26 chrX:6632017-6632137 2.97e-01 68_[+1(6.56e-05)]_44 chr2R:21300904-21301024 9.22e-01 120 chrX:1119343-1119463 7.76e-02 120 chr3L:10531150-10531270 1.02e-01 88_[+4(2.68e-05)]_3_[+4(2.68e-05)]_\ 13 chr3L:17504714-17504834 3.05e-01 120 chr2L:18831393-18831513 1.66e-01 120 chrX:6730729-6730849 2.64e-01 106_[+1(6.56e-05)]_6 chr3L:21122764-21122884 8.92e-03 98_[+3(2.59e-05)]_14 chr3R:27706100-27706220 1.90e-02 76_[+3(2.59e-05)]_36 chr3L:18231482-18231602 5.91e-02 120 chrX:1966089-1966209 2.31e-02 37_[+4(6.97e-05)]_75 chrX:6708221-6708341 2.27e-02 95_[+4(6.97e-05)]_17 chr3R:31644476-31644596 1.61e-01 86_[+3(5.46e-05)]_26 chr3R:20280652-20280772 2.29e-01 120 chrX:13754740-13754860 2.57e-03 66_[+1(6.56e-05)]_15_[+3(5.46e-05)]_\ 23 chr4:829943-830063 5.64e-02 103_[+1(6.56e-05)]_[+1(6.56e-05)]_1 chr3L:22109779-22109899 2.38e-01 120 chr3L:5941270-5941390 1.48e-01 84_[+1(6.56e-05)]_28 chrX:2648369-2648489 5.53e-03 6_[+4(6.97e-05)]_61_[+1(6.56e-05)]_\ 37 chr2L:4297000-4297120 6.01e-01 120 chr3L:11634677-11634797 1.37e-01 120 chr3R:23319006-23319126 8.06e-02 120 chr2L:16588930-16589050 2.61e-01 120 chr2L:11074028-11074148 9.98e-01 120 chr2L:4648930-4649050 6.70e-01 120 chr2L:3095519-3095639 1.14e-02 56_[+4(6.97e-05)]_8_[+2(8.75e-05)]_\ 2_[+2(8.75e-05)]_30 chrX:2976158-2976278 3.87e-02 120 chr2R:7791633-7791753 9.54e-04 25_[+3(1.29e-05)]_56_[+4(2.68e-05)]_\ 23 chr2L:14681766-14681886 3.92e-02 120 chrX:12239307-12239427 2.07e-03 51_[+2(8.75e-05)]_32_[+2(8.75e-05)]_\ 21 chrX:3100038-3100158 1.07e-01 2_[+2(8.75e-05)]_[+2(8.75e-05)]_17_\ [+2(8.75e-05)]_77 chr2R:22571960-22572080 5.18e-04 71_[+5(2.40e-05)]_22_[+4(6.97e-05)]_\ 11 chr2R:17871224-17871344 5.58e-02 75_[+1(6.56e-05)]_37 chr2R:8065334-8065454 3.30e-01 120 chrX:21324448-21324568 7.37e-01 120 chr3R:19069858-19069978 7.15e-01 120 chr3R:21933986-21934106 1.88e-02 69_[+1(6.56e-05)]_21_[+1(6.56e-05)]_\ 14 chrX:9344312-9344432 4.11e-03 17_[+2(8.75e-05)]_95 chr2L:2519370-2519490 2.86e-01 112_[+5(6.16e-05)] chr3R:26442973-26443093 8.54e-02 120 chr3L:346788-346908 1.90e-01 120 chr2R:18879238-18879358 1.77e-02 76_[+2(8.75e-05)]_36 chr2L:6100496-6100616 2.80e-01 120 chr2R:21531806-21531926 2.34e-01 81_[+1(6.56e-05)]_31 chr3R:9222546-9222666 1.22e-02 31_[+4(2.68e-05)]_17_[+2(8.75e-05)]_\ 56 chr3L:3225937-3226057 4.44e-01 120 chrX:7097519-7097639 4.48e-03 24_[+2(8.75e-05)]_88 chr3L:13288430-13288550 3.40e-01 120 chr3R:14847984-14848104 9.84e-01 120 chr2L:8812980-8813100 2.53e-02 6_[+3(3.40e-05)]_106 chr3R:29280785-29280905 5.80e-01 120 chr3R:29211793-29211913 2.87e-01 120 chr2L:18005589-18005709 7.18e-02 120 chr3R:30344656-30344776 9.52e-02 120 chr3R:24152687-24152807 4.80e-02 120 chr3L:16002479-16002599 3.07e-01 120 chr3R:18488253-18488373 5.56e-01 120 chr2L:12527784-12527904 1.22e-01 120 chrX:3175227-3175347 6.54e-02 11_[+2(8.75e-05)]_101 chr3R:18146813-18146933 5.51e-02 26_[+1(6.56e-05)]_86 chr2R:7764297-7764417 2.30e-02 59_[+2(8.75e-05)]_53 chr2L:21004929-21005049 4.28e-03 36_[+4(2.68e-05)]_76 chr2L:2802644-2802764 1.25e-02 6_[+5(2.40e-05)]_106 chr3L:16748388-16748508 1.81e-01 120 chr3L:6405034-6405154 3.28e-02 57_[+2(8.75e-05)]_55 chr3L:16041735-16041855 1.08e-02 24_[+2(8.75e-05)]_7_[+2(8.75e-05)]_\ 73 chrX:17806453-17806573 1.28e-02 77_[+2(8.75e-05)]_23_[+2(8.75e-05)]_\ 4 chr3R:30005471-30005591 2.01e-01 62_[+1(6.56e-05)]_50 chrX:13951573-13951693 1.10e-01 103_[+3(4.21e-05)]_9 chr3R:13647144-13647264 4.55e-02 69_[+2(8.75e-05)]_43 chr2R:10847365-10847485 5.51e-01 120 chr3R:21643359-21643479 8.99e-01 120 chr3L:5141381-5141501 5.69e-02 83_[+5(4.31e-05)]_29 chr3R:11860004-11860124 2.58e-01 120 chr2R:11704605-11704725 2.82e-01 120 chr3L:19793018-19793138 1.03e-04 7_[+4(6.97e-05)]_17_[+3(9.28e-05)]_\ 80 chr3L:5251611-5251731 1.40e-04 45_[+4(6.97e-05)]_37_[+3(2.59e-05)]_\ 22 chrX:17355895-17356015 7.60e-01 120 chr3R:9389106-9389226 1.32e-02 77_[+3(2.59e-05)]_35 chr2R:15664548-15664668 1.20e-02 120 chr3L:2817965-2818085 4.82e-02 120 chr2R:17469791-17469911 1.50e-03 52_[+2(8.75e-05)]_31_[+3(9.28e-05)]_\ 21 chr2L:14506841-14506961 1.70e-02 10_[+4(6.97e-05)]_102 chrX:15077825-15077945 2.21e-01 78_[+5(7.72e-05)]_34 chrX:8839474-8839594 4.61e-01 120 chr3R:30773043-30773163 3.76e-01 120 chr3L:16464004-16464124 5.27e-01 120 chr3R:29250650-29250770 1.98e-01 19_[+2(8.75e-05)]_93 chr2R:22596900-22597020 1.36e-02 61_[+5(2.40e-05)]_51 chr3R:6664797-6664917 8.65e-01 120 chr3R:30833284-30833404 1.10e-02 92_[+3(5.46e-05)]_20 chr3R:30338790-30338910 1.05e-01 14_[+1(6.56e-05)]_98 chr2R:13478498-13478618 1.52e-01 120 chrX:6778236-6778356 9.57e-01 120 chrX:18544826-18544946 6.23e-02 [+2(8.75e-05)]_112 chr2L:4417005-4417125 5.82e-01 120 chr2L:18943470-18943590 1.89e-01 120 chr2R:11180826-11180946 8.04e-02 120 chr2L:1459474-1459594 6.54e-01 120 chr3L:4745311-4745431 2.30e-01 120 chrX:15639153-15639273 3.13e-01 120 chrX:11569977-11570097 1.50e-02 22_[+3(9.28e-05)]_26_[+1(6.56e-05)]_\ 9_[+1(6.56e-05)]_39 chrX:8159126-8159246 4.03e-01 120 chr3L:21892766-21892886 4.41e-02 120 chr3R:4687332-4687452 9.28e-01 120 chr3R:20556849-20556969 7.49e-03 62_[+5(2.40e-05)]_50 chr3L:11557301-11557421 2.41e-03 40_[+5(4.31e-05)]_72 chr2L:9949401-9949521 5.12e-02 7_[+5(4.31e-05)]_105 chr2L:7207797-7207917 2.03e-01 52_[+3(2.59e-05)]_60 chr3L:18889378-18889498 9.10e-02 120 chr2R:13592931-13593051 1.23e-01 120 chr3R:8350004-8350124 1.73e-03 47_[+2(8.75e-05)]_18_[+5(4.31e-05)]_\ 39 chr3R:29726031-29726151 1.94e-02 34_[+4(2.68e-05)]_1_[+2(8.75e-05)]_\ 10_[+2(8.75e-05)]_51 chr3L:8360423-8360543 1.87e-03 120 chrX:20166815-20166935 1.12e-02 12_[+5(7.72e-05)]_45_[+3(2.59e-05)]_\ 47 chrX:11148009-11148129 3.87e-01 120 chr3R:18743260-18743380 1.43e-01 120 chr3R:22140194-22140314 2.53e-01 120 chr3L:20387962-20388082 3.82e-03 52_[+3(2.59e-05)]_60 chrX:7980871-7980991 3.32e-01 97_[+1(6.56e-05)]_15 chr2R:7040019-7040139 2.02e-04 8_[+3(3.40e-05)]_104 chrX:10801244-10801364 3.24e-02 120 chr3R:8958463-8958583 9.82e-01 120 chr2R:23306109-23306229 8.28e-01 120 chr3L:10396671-10396791 6.60e-01 120 chr3R:18998464-18998584 2.30e-01 120 chr3L:15229556-15229676 2.29e-01 120 chr3L:17914199-17914319 8.57e-02 58_[+3(3.40e-05)]_54 chr3L:1367129-1367249 6.35e-02 57_[+1(6.56e-05)]_55 chr3R:30014036-30014156 5.80e-02 120 chrX:16633627-16633747 7.72e-02 78_[+3(1.29e-05)]_34 chr2R:10548446-10548566 2.90e-02 19_[+2(8.75e-05)]_93 chr2L:8229311-8229431 8.67e-01 120 chr3R:24970770-24970890 2.98e-01 120 chr2L:5494145-5494265 2.42e-01 120 chr2R:13468915-13469035 1.32e-01 120 chr3R:18485342-18485462 4.88e-01 120 chr3L:18245820-18245940 6.40e-01 120 chr3L:15005936-15006056 9.07e-01 120 chrX:11485300-11485420 4.13e-02 120 chr2R:14082355-14082475 3.48e-02 120 chr2R:24985723-24985843 7.90e-03 91_[+5(2.40e-05)]_21 chr3R:31320037-31320157 8.84e-01 120 chr3R:11865252-11865372 4.88e-03 60_[+1(6.56e-05)]_52 chr2R:8595878-8595998 9.80e-01 120 chr2L:9231825-9231945 5.87e-04 23_[+3(1.29e-05)]_23_[+2(8.75e-05)]_\ 58 chr3L:13487069-13487189 5.45e-02 58_[+5(6.16e-05)]_54 chr3R:11859224-11859344 3.03e-02 120 chr2R:18907112-18907232 3.78e-01 120 chr3L:21202733-21202853 4.11e-02 53_[+1(6.56e-05)]_59 chr3R:12406793-12406913 1.26e-02 45_[+4(8.65e-05)]_34_[+3(2.59e-05)]_\ 25 chr2R:21386699-21386819 1.50e-01 120 chr3L:16259581-16259701 6.77e-01 120 chr3R:19074346-19074466 5.18e-02 32_[+5(9.27e-05)]_80 chr3R:8939804-8939924 9.24e-04 49_[+3(9.28e-05)]_46_[+5(2.40e-05)]_\ 9 chr2L:2806354-2806474 3.43e-02 49_[+5(6.16e-05)]_63 chr3R:18914417-18914537 3.45e-01 120 chrX:9139254-9139374 1.07e-01 62_[+3(2.59e-05)]_50 chr2L:18344459-18344579 4.18e-01 120 chr2L:19317924-19318044 4.74e-01 120 chr2R:16154050-16154170 1.11e-01 55_[+2(8.75e-05)]_24_[+2(8.75e-05)]_\ 25 chr3R:31723339-31723459 9.96e-01 120 chr3L:9367580-9367700 4.04e-02 55_[+2(8.75e-05)]_22_[+2(8.75e-05)]_\ 27 chr3L:11442468-11442588 8.58e-03 93_[+4(6.97e-05)]_[+2(8.75e-05)]_11 chr3L:8881831-8881951 5.52e-01 120 chr2R:18355943-18356063 6.75e-02 48_[+1(6.56e-05)]_64 chr3R:19255333-19255453 7.48e-02 120 chrX:10741951-10742071 7.78e-04 75_[+3(9.28e-05)]_12_[+4(2.68e-05)]_\ 17 chr3L:7134973-7135093 8.50e-05 6_[+2(8.75e-05)]_15_[+4(2.68e-05)]_\ 13_[+4(2.68e-05)]_42_[+1(6.56e-05)]_12 chr3L:5188499-5188619 7.19e-01 120 chr3R:24261764-24261884 8.01e-01 120 chr3L:22192345-22192465 8.87e-01 120 chr2L:7971551-7971671 1.02e-02 56_[+1(6.56e-05)]_33_[+4(2.68e-05)]_\ 15 chr2L:11074227-11074347 8.69e-01 120 chr3R:14717305-14717425 6.16e-01 120 chr2L:524580-524700 1.15e-02 38_[+3(4.21e-05)]_74 chr3L:539867-539987 5.33e-03 120 chr3R:25493951-25494071 2.20e-03 48_[+5(2.40e-05)]_64 chr3R:23728236-23728356 2.83e-01 44_[+1(6.56e-05)]_[+1(6.56e-05)]_60 chr2L:843979-844099 4.40e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************