******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/brk.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:22596476-22596596 1.0000 120 chrM:16017-16137 1.0000 120 chrM:19293-19413 1.0000 120 chr3R:14398757-14398877 1.0000 120 chr3R:25302283-25302403 1.0000 120 chrX:10764650-10764770 1.0000 120 chr3R:26882391-26882511 1.0000 120 chr3L:10863705-10863825 1.0000 120 chr2L:4937201-4937321 1.0000 120 chrX:9355535-9355655 1.0000 120 chr2L:5971564-5971684 1.0000 120 chrX:15070271-15070391 1.0000 120 chrM:15263-15383 1.0000 120 chr3L:13946140-13946260 1.0000 120 chr3L:18007336-18007456 1.0000 120 chr2R:13006114-13006234 1.0000 120 chr2R:18398018-18398138 1.0000 120 chr2R:7775475-7775595 1.0000 120 chr3L:1971246-1971366 1.0000 120 chr2L:3648358-3648478 1.0000 120 chr2R:7724506-7724626 1.0000 120 chr3R:13843815-13843935 1.0000 120 chr3L:7530695-7530815 1.0000 120 chrX:7339238-7339358 1.0000 120 chrX:15869542-15869662 1.0000 120 chr3L:6369807-6369927 1.0000 120 chr3L:2171178-2171298 1.0000 120 chr2L:13069897-13070017 1.0000 120 chr3L:15142912-15143032 1.0000 120 chr3R:4678892-4679012 1.0000 120 chr3R:13402056-13402176 1.0000 120 chr3L:3082663-3082783 1.0000 120 chr3R:8229395-8229515 1.0000 120 chr2L:8366643-8366763 1.0000 120 chr3R:17393225-17393345 1.0000 120 chr3R:13017437-13017557 1.0000 120 chrX:14802776-14802896 1.0000 120 chr3R:14736185-14736305 1.0000 120 chr4:132433-132553 1.0000 120 chr2L:10207156-10207276 1.0000 120 chr2R:10531542-10531662 1.0000 120 chr2R:11662332-11662452 1.0000 120 chr2L:8906475-8906595 1.0000 120 chr2R:13430383-13430503 1.0000 120 chr2R:18291693-18291813 1.0000 120 chr3R:13647723-13647843 1.0000 120 chr3R:23216367-23216487 1.0000 120 chr2R:11561737-11561857 1.0000 120 chr2R:10580897-10581017 1.0000 120 chr3L:10697698-10697818 1.0000 120 chr3L:2174483-2174603 1.0000 120 chr3R:20547620-20547740 1.0000 120 chr2L:5001749-5001869 1.0000 120 chr3R:21019129-21019249 1.0000 120 chrX:10764856-10764976 1.0000 120 chr3L:95949-96069 1.0000 120 chr3R:29841282-29841402 1.0000 120 chr2L:13843985-13844105 1.0000 120 chr2L:19543248-19543368 1.0000 120 chr2R:19447094-19447214 1.0000 120 chr2R:11091787-11091907 1.0000 120 chr2L:19424918-19425038 1.0000 120 chr3R:27199051-27199171 1.0000 120 chr3R:6354502-6354622 1.0000 120 chr3L:141266-141386 1.0000 120 chr3L:11233725-11233845 1.0000 120 chr3R:8228810-8228930 1.0000 120 chr2L:20830234-20830354 1.0000 120 chr2L:13576432-13576552 1.0000 120 chrX:7340986-7341106 1.0000 120 chrM:17035-17155 1.0000 120 chr2L:15275137-15275257 1.0000 120 chrX:17532410-17532530 1.0000 120 chr3L:18812414-18812534 1.0000 120 chrX:13741253-13741373 1.0000 120 chr3R:14624998-14625118 1.0000 120 chr4:835389-835509 1.0000 120 chr2L:12644356-12644476 1.0000 120 chr3R:23995330-23995450 1.0000 120 chr2R:20580530-20580650 1.0000 120 chr3L:17580078-17580198 1.0000 120 chr3L:22074736-22074856 1.0000 120 chr2L:8258453-8258573 1.0000 120 chr3L:1091181-1091301 1.0000 120 chr2L:14571500-14571620 1.0000 120 chr3R:28536842-28536962 1.0000 120 chrX:7314361-7314481 1.0000 120 chr2L:12045239-12045359 1.0000 120 chr3R:20545266-20545386 1.0000 120 chr2L:13878341-13878461 1.0000 120 chrM:8364-8484 1.0000 120 chr2L:3642592-3642712 1.0000 120 chr2L:15272425-15272545 1.0000 120 chr3L:7376296-7376416 1.0000 120 chr3L:13951552-13951672 1.0000 120 chr3R:19224639-19224759 1.0000 120 chr2L:21574216-21574336 1.0000 120 chr2L:4812345-4812465 1.0000 120 chr3L:15547481-15547601 1.0000 120 chr3L:3196869-3196989 1.0000 120 chr3R:13931927-13932047 1.0000 120 chr3L:14300186-14300306 1.0000 120 chr2R:19150603-19150723 1.0000 120 chr3R:31054653-31054773 1.0000 120 chr3L:8777635-8777755 1.0000 120 chrX:8573332-8573452 1.0000 120 chr3L:17721208-17721328 1.0000 120 chr2L:6464923-6465043 1.0000 120 chr3R:4187269-4187389 1.0000 120 chr3L:18019074-18019194 1.0000 120 chr3L:11525809-11525929 1.0000 120 chr3L:3252021-3252141 1.0000 120 chrX:5917685-5917805 1.0000 120 chr3R:11449852-11449972 1.0000 120 chr3R:17061919-17062039 1.0000 120 chr3L:5172363-5172483 1.0000 120 chr4:866645-866765 1.0000 120 chr2L:381435-381555 1.0000 120 chr3R:20548669-20548789 1.0000 120 chr3R:4479050-4479170 1.0000 120 chr3R:11805584-11805704 1.0000 120 chr3R:12723841-12723961 1.0000 120 chr3L:6249305-6249425 1.0000 120 chrX:5031438-5031558 1.0000 120 chr4:129193-129313 1.0000 120 chrM:4268-4388 1.0000 120 chr2L:21677940-21678060 1.0000 120 chr2L:21243953-21244073 1.0000 120 chr3R:15198243-15198363 1.0000 120 chr3R:7089141-7089261 1.0000 120 chr2R:19450640-19450760 1.0000 120 chr3R:28677730-28677850 1.0000 120 chr2L:9707694-9707814 1.0000 120 chr2L:5978585-5978705 1.0000 120 chr3R:9365973-9366093 1.0000 120 chr3L:8058867-8058987 1.0000 120 chr2L:168692-168812 1.0000 120 chr2R:9189930-9190050 1.0000 120 chr3L:20199660-20199780 1.0000 120 chr3R:20784503-20784623 1.0000 120 chr3L:2577537-2577657 1.0000 120 chr3L:17569863-17569983 1.0000 120 chr3R:19064187-19064307 1.0000 120 chr2L:2171395-2171515 1.0000 120 chr2R:18658127-18658247 1.0000 120 chr3R:21059748-21059868 1.0000 120 chrX:14810506-14810626 1.0000 120 chr3R:27580852-27580972 1.0000 120 chr2L:7437232-7437352 1.0000 120 chr3L:11788823-11788943 1.0000 120 chrX:1577287-1577407 1.0000 120 chr2R:6517814-6517934 1.0000 120 chrX:2141139-2141259 1.0000 120 chr2R:25002112-25002232 1.0000 120 chr3R:30809058-30809178 1.0000 120 chrX:11555091-11555211 1.0000 120 chr3R:4243277-4243397 1.0000 120 chr3L:17427318-17427438 1.0000 120 chr3L:6809636-6809756 1.0000 120 chr3L:22871686-22871806 1.0000 120 chr2L:11039047-11039167 1.0000 120 chr2R:23721738-23721858 1.0000 120 chr2R:6153699-6153819 1.0000 120 chr2L:10222703-10222823 1.0000 120 chrX:15045740-15045860 1.0000 120 chr3L:4510457-4510577 1.0000 120 chr3L:8825082-8825202 1.0000 120 chr2L:21622779-21622899 1.0000 120 chr3L:2820410-2820530 1.0000 120 chr2L:19570813-19570933 1.0000 120 chr2L:21219172-21219292 1.0000 120 chr2L:20316695-20316815 1.0000 120 chr3L:3344641-3344761 1.0000 120 chr2L:17782076-17782196 1.0000 120 chr2L:3772655-3772775 1.0000 120 chr2R:10528694-10528814 1.0000 120 chr2R:17110808-17110928 1.0000 120 chr2R:7132490-7132610 1.0000 120 chr3R:14697611-14697731 1.0000 120 chrX:1566151-1566271 1.0000 120 chr3L:12902718-12902838 1.0000 120 chrM:6719-6839 1.0000 120 chr3L:17949631-17949751 1.0000 120 chr3L:21108989-21109109 1.0000 120 chrX:12035341-12035461 1.0000 120 chr3R:29282981-29283101 1.0000 120 chr3L:14615430-14615550 1.0000 120 chrX:1611738-1611858 1.0000 120 chrX:5904334-5904454 1.0000 120 chr3R:17595219-17595339 1.0000 120 chr2R:6241940-6242060 1.0000 120 chr3R:7173051-7173171 1.0000 120 chr3R:13660013-13660133 1.0000 120 chrX:9502501-9502621 1.0000 120 chr3L:5367994-5368114 1.0000 120 chrX:1617474-1617594 1.0000 120 chr3R:9456517-9456637 1.0000 120 chr3L:9969622-9969742 1.0000 120 chr3L:16150905-16151025 1.0000 120 chr3R:23869553-23869673 1.0000 120 chr2L:9451620-9451740 1.0000 120 chr3R:31701953-31702073 1.0000 120 chr3R:20305911-20306031 1.0000 120 chr3L:14973366-14973486 1.0000 120 chr2L:7954737-7954857 1.0000 120 chr3L:22389204-22389324 1.0000 120 chr3L:9694653-9694773 1.0000 120 chr3L:12387150-12387270 1.0000 120 chrX:21067973-21068093 1.0000 120 chr3R:9049315-9049435 1.0000 120 chrX:7097168-7097288 1.0000 120 chr3L:17563120-17563240 1.0000 120 chr2R:13980137-13980257 1.0000 120 chr3L:739431-739551 1.0000 120 chr3R:6421708-6421828 1.0000 120 chrX:12658585-12658705 1.0000 120 chr3L:769189-769309 1.0000 120 chr3L:5571220-5571340 1.0000 120 chr2L:3480622-3480742 1.0000 120 chr2R:24237401-24237521 1.0000 120 chr2R:7013155-7013275 1.0000 120 chr3L:225423-225543 1.0000 120 chr2L:13289749-13289869 1.0000 120 chrX:22487867-22487987 1.0000 120 chr2L:9981932-9982052 1.0000 120 chr3R:17059164-17059284 1.0000 120 chr2L:6477134-6477254 1.0000 120 chr3L:10663221-10663341 1.0000 120 chr2L:3781235-3781355 1.0000 120 chr3R:17404277-17404397 1.0000 120 chr2L:9187470-9187590 1.0000 120 chr3L:3036989-3037109 1.0000 120 chr3L:15116574-15116694 1.0000 120 chr3R:23191225-23191345 1.0000 120 chr2R:6143610-6143730 1.0000 120 chr3R:19166490-19166610 1.0000 120 chr3L:11247940-11248060 1.0000 120 chr3R:14051310-14051430 1.0000 120 chr2L:8004282-8004402 1.0000 120 chr3L:16610487-16610607 1.0000 120 chr2R:13409897-13410017 1.0000 120 chr2L:18981644-18981764 1.0000 120 chr3R:16982326-16982446 1.0000 120 chr3R:21190916-21191036 1.0000 120 chr3L:18001968-18002088 1.0000 120 chr2L:9526624-9526744 1.0000 120 chr2R:21702076-21702196 1.0000 120 chr3L:17922832-17922952 1.0000 120 chr2R:11098450-11098570 1.0000 120 chr3L:11623684-11623804 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_brk/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/brk.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.332 C 0.177 G 0.165 T 0.326 Background letter frequencies (from file dataset with add-one prior applied): A 0.332 C 0.177 G 0.165 T 0.326 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGGCGCCA MEME-1 width = 8 sites = 7 llr = 83 E-value = 3.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3::::::9 pos.-specific C :::a:aa: probability G :aa:a::1 matrix T 7::::::: bits 2.6 ****** 2.3 ****** 2.1 ****** 1.8 ****** Relative 1.6 ****** Entropy 1.3 ****** (17.2 bits) 1.0 ******* 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGGCGCCA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:17059164-17059284 62 2.70e-06 ATGTATTCGG TGGCGCCA GGGCACACAG chr2L:3480622-3480742 73 2.70e-06 CTTTTCATTA TGGCGCCA CTGTGCTAAA chrX:12035341-12035461 106 2.70e-06 GAACAACAGA TGGCGCCA GCTGAAG chr3L:12902718-12902838 112 2.70e-06 TTGTATTGAG TGGCGCCA T chr2L:13289749-13289869 23 5.44e-06 AGTTTGAATT AGGCGCCA AAAAGTGTTG chrX:5031438-5031558 85 5.44e-06 CCAGTCACAA AGGCGCCA AAATCGAAGT chr3R:17061919-17062039 56 6.78e-06 TTTTTAATGA TGGCGCCG AACACATTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:17059164-17059284 2.7e-06 61_[+1]_51 chr2L:3480622-3480742 2.7e-06 72_[+1]_40 chrX:12035341-12035461 2.7e-06 105_[+1]_7 chr3L:12902718-12902838 2.7e-06 111_[+1]_1 chr2L:13289749-13289869 5.4e-06 22_[+1]_90 chrX:5031438-5031558 5.4e-06 84_[+1]_28 chr3R:17061919-17062039 6.8e-06 55_[+1]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCGCCA width=8 seqs=7 chr3R:17059164-17059284 ( 62) TGGCGCCA 1 chr2L:3480622-3480742 ( 73) TGGCGCCA 1 chrX:12035341-12035461 ( 106) TGGCGCCA 1 chr3L:12902718-12902838 ( 112) TGGCGCCA 1 chr2L:13289749-13289869 ( 23) AGGCGCCA 1 chrX:5031438-5031558 ( 85) AGGCGCCA 1 chr3R:17061919-17062039 ( 56) TGGCGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 3.3e+002 -22 -945 -945 113 -945 -945 260 -945 -945 -945 260 -945 -945 250 -945 -945 -945 -945 260 -945 -945 250 -945 -945 -945 250 -945 -945 137 -945 -21 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.3e+002 0.285714 0.000000 0.000000 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 regular expression -------------------------------------------------------------------------------- [TA]GGCGCCA -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGCGKV MEME-2 width = 8 sites = 15 llr = 148 E-value = 1.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGCGKV MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::1::::3 pos.-specific C :a8:83:3 probability G a::a2774 matrix T ::1::13: bits 2.6 ** * 2.3 ** * 2.1 ** * 1.8 ** ** Relative 1.6 ** ** Entropy 1.3 ******* (14.3 bits) 1.0 ******* 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCGCGGG consensus GCTA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCGKV MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3781235-3781355 19 6.78e-07 TGTTTGCTTT GCCGCGGG GCTAATTCTT chr2R:18291693-18291813 113 2.77e-06 CCGATGAGCA GCCGCGGA chr2R:11662332-11662452 95 6.25e-06 TAATTGGGTG GCCGCGTG ACGAATATAA chr3L:13946140-13946260 58 6.25e-06 tatatatatC GCCGCGTG TCCATCTCAT chr3R:20784503-20784623 18 9.83e-06 TCTGGTCGTC GCCGCCGA CGCCGCTTAA chr3L:14973366-14973486 73 1.11e-05 AGCCGAGTGA GCCGGGGA AACCTGTTAC chr2L:6464923-6465043 69 1.11e-05 CATTTTCTGC GCCGGGGA GCAGGGACCG chr3L:22871686-22871806 92 1.45e-05 ATTCACCACA GCCGCGTA CGTTGCGCGA chr3R:17061919-17062039 11 1.45e-05 TCGTCGTCTG GCCGGCGG ATGGACGACG chr3R:31701953-31702073 84 1.72e-05 TCACACAAAT GCCGCCTG GATAAACATA chr3L:11623684-11623804 7 2.21e-05 ACGATT GCCGCCTC TCAACAAACT chr2R:13409897-13410017 2 2.21e-05 G GCAGCGGC GATCTTTTAG chrX:1566151-1566271 3 2.21e-05 AG GCAGCGGC AGCGAAGCCT chr3L:11525809-11525929 65 2.47e-05 AAATGAGACG GCTGCGGG TTTTATTGGT chr3R:17059164-17059284 111 3.56e-05 ATACGAACAT GCCGCTGC TC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCGKV MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3781235-3781355 6.8e-07 18_[+2]_94 chr2R:18291693-18291813 2.8e-06 112_[+2] chr2R:11662332-11662452 6.3e-06 94_[+2]_18 chr3L:13946140-13946260 6.3e-06 57_[+2]_55 chr3R:20784503-20784623 9.8e-06 17_[+2]_95 chr3L:14973366-14973486 1.1e-05 72_[+2]_40 chr2L:6464923-6465043 1.1e-05 68_[+2]_44 chr3L:22871686-22871806 1.4e-05 91_[+2]_21 chr3R:17061919-17062039 1.4e-05 10_[+2]_102 chr3R:31701953-31702073 1.7e-05 83_[+2]_29 chr3L:11623684-11623804 2.2e-05 6_[+2]_106 chr2R:13409897-13410017 2.2e-05 1_[+2]_111 chrX:1566151-1566271 2.2e-05 2_[+2]_110 chr3L:11525809-11525929 2.5e-05 64_[+2]_48 chr3R:17059164-17059284 3.6e-05 110_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCGKV MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGCGKV width=8 seqs=15 chr2L:3781235-3781355 ( 19) GCCGCGGG 1 chr2R:18291693-18291813 ( 113) GCCGCGGA 1 chr2R:11662332-11662452 ( 95) GCCGCGTG 1 chr3L:13946140-13946260 ( 58) GCCGCGTG 1 chr3R:20784503-20784623 ( 18) GCCGCCGA 1 chr3L:14973366-14973486 ( 73) GCCGGGGA 1 chr2L:6464923-6465043 ( 69) GCCGGGGA 1 chr3L:22871686-22871806 ( 92) GCCGCGTA 1 chr3R:17061919-17062039 ( 11) GCCGGCGG 1 chr3R:31701953-31702073 ( 84) GCCGCCTG 1 chr3L:11623684-11623804 ( 7) GCCGCCTC 1 chr2R:13409897-13410017 ( 2) GCAGCGGC 1 chrX:1566151-1566271 ( 3) GCAGCGGC 1 chr3L:11525809-11525929 ( 65) GCTGCGGG 1 chr3R:17059164-17059284 ( 111) GCCGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCGKV MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 1.0e+003 -1055 -1055 260 -1055 -1055 250 -1055 -1055 -132 218 -1055 -229 -1055 -1055 260 -1055 -1055 218 28 -1055 -1055 59 201 -229 -1055 -1055 201 3 1 59 128 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCGKV MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.0e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.133333 0.800000 0.000000 0.066667 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.266667 0.666667 0.066667 0.000000 0.000000 0.666667 0.333333 0.333333 0.266667 0.400000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCGKV MEME-2 regular expression -------------------------------------------------------------------------------- GCCG[CG][GC][GT][GAC] -------------------------------------------------------------------------------- Time 13.74 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCTGTK MEME-3 width = 8 sites = 12 llr = 126 E-value = 3.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCTGTK MEME-3 Description -------------------------------------------------------------------------------- Simplified A :8:::::: pos.-specific C a:1a:::: probability G :29::a:4 matrix T ::::a:a6 bits 2.6 * * * 2.3 * * * 2.1 * ** * 1.8 * ** * Relative 1.6 * ***** Entropy 1.3 * ***** (15.2 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGCTGTT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTK MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:11247940-11248060 16 4.97e-06 GCAAAAGAAT CAGCTGTG AAAGACGAAG chr3L:9969622-9969742 88 4.97e-06 ATATTGCTGG CAGCTGTG TTTATATAGC chr2L:168692-168812 28 4.97e-06 GAACAACAAG CAGCTGTG CAATATGCGA chr3L:11623684-11623804 38 1.48e-05 CGATTCCACT CAGCTGTT AACCGCTTAT chr2L:8004282-8004402 35 1.48e-05 ACTAAATGAA CAGCTGTT CCGTTAAACG chr3R:17404277-17404397 72 1.48e-05 TTTGTTCTCT CAGCTGTT CAAAGACGTT chr3R:23869553-23869673 74 1.48e-05 CTCTGCCACA CAGCTGTT TGCATTTCAA chr3R:9456517-9456637 35 1.48e-05 TAAGAATACT CAGCTGTT CTGATTGGAG chr2L:15275137-15275257 36 1.48e-05 ATTTGATGAA CAGCTGTT CAATGGATCT chrX:15045740-15045860 19 1.72e-05 TAATGCCATT CGGCTGTG TAAACTGCAT chr2L:4937201-4937321 30 2.21e-05 TGCTTTAAAA CGGCTGTT CTAGTAAGCT chr2L:18981644-18981764 47 2.74e-05 ACCAAACATG CACCTGTG CACATGGCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTK MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:11247940-11248060 5e-06 15_[+3]_97 chr3L:9969622-9969742 5e-06 87_[+3]_25 chr2L:168692-168812 5e-06 27_[+3]_85 chr3L:11623684-11623804 1.5e-05 37_[+3]_75 chr2L:8004282-8004402 1.5e-05 34_[+3]_78 chr3R:17404277-17404397 1.5e-05 71_[+3]_41 chr3R:23869553-23869673 1.5e-05 73_[+3]_39 chr3R:9456517-9456637 1.5e-05 34_[+3]_78 chr2L:15275137-15275257 1.5e-05 35_[+3]_77 chrX:15045740-15045860 1.7e-05 18_[+3]_94 chr2L:4937201-4937321 2.2e-05 29_[+3]_83 chr2L:18981644-18981764 2.7e-05 46_[+3]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTK MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCTGTK width=8 seqs=12 chr3L:11247940-11248060 ( 16) CAGCTGTG 1 chr3L:9969622-9969742 ( 88) CAGCTGTG 1 chr2L:168692-168812 ( 28) CAGCTGTG 1 chr3L:11623684-11623804 ( 38) CAGCTGTT 1 chr2L:8004282-8004402 ( 35) CAGCTGTT 1 chr3R:17404277-17404397 ( 72) CAGCTGTT 1 chr3R:23869553-23869673 ( 74) CAGCTGTT 1 chr3R:9456517-9456637 ( 35) CAGCTGTT 1 chr2L:15275137-15275257 ( 36) CAGCTGTT 1 chrX:15045740-15045860 ( 19) CGGCTGTG 1 chr2L:4937201-4937321 ( 30) CGGCTGTT 1 chr2L:18981644-18981764 ( 47) CACCTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTK MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8592 E= 3.7e+002 -1023 250 -1023 -1023 133 -1023 1 -1023 -1023 -108 247 -1023 -1023 250 -1023 -1023 -1023 -1023 -1023 162 -1023 -1023 260 -1023 -1023 -1023 -1023 162 -1023 -1023 133 84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTK MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 3.7e+002 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.416667 0.583333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTK MEME-3 regular expression -------------------------------------------------------------------------------- CAGCTGT[TG] -------------------------------------------------------------------------------- Time 20.02 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGAGYG MEME-4 width = 8 sites = 5 llr = 60 E-value = 3.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGAGYG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C 8:a:::6: probability G 2a:a:a:a matrix T ::::::4: bits 2.6 *** * * 2.3 *** * * 2.1 *** * * 1.8 **** * * Relative 1.6 ****** * Entropy 1.3 ******** (17.5 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCGAGCG consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGAGYG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:2171178-2171298 64 1.36e-06 TCTAGAAATT CGCGAGCG CTTAAGTTGA chr3L:10863705-10863825 38 1.36e-06 TTGTTGTTGT CGCGAGCG TTGACAGTCG chr3L:22871686-22871806 105 3.88e-06 GCGTACGTTG CGCGAGTG TTCGTGGA chr3R:4479050-4479170 59 3.88e-06 GAAACGACGA CGCGAGTG AAATCGTTCA chr3L:18001968-18002088 14 5.15e-06 TTAATCGGTT GGCGAGCG GTTGAAGGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGAGYG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:2171178-2171298 1.4e-06 63_[+4]_49 chr3L:10863705-10863825 1.4e-06 37_[+4]_75 chr3L:22871686-22871806 3.9e-06 104_[+4]_8 chr3R:4479050-4479170 3.9e-06 58_[+4]_54 chr3L:18001968-18002088 5.1e-06 13_[+4]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGAGYG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGAGYG width=8 seqs=5 chr3L:2171178-2171298 ( 64) CGCGAGCG 1 chr3L:10863705-10863825 ( 38) CGCGAGCG 1 chr3L:22871686-22871806 ( 105) CGCGAGTG 1 chr3R:4479050-4479170 ( 59) CGCGAGTG 1 chr3L:18001968-18002088 ( 14) GGCGAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGAGYG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 3.6e+003 -897 217 28 -897 -897 -897 260 -897 -897 250 -897 -897 -897 -897 260 -897 159 -897 -897 -897 -897 -897 260 -897 -897 176 -897 30 -897 -897 260 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGAGYG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 3.6e+003 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGAGYG MEME-4 regular expression -------------------------------------------------------------------------------- [CG]GCGAG[CT]G -------------------------------------------------------------------------------- Time 26.28 secs. ******************************************************************************** ******************************************************************************** MOTIF GCVMAACA MEME-5 width = 8 sites = 21 llr = 196 E-value = 8.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCVMAACA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::45a8:a pos.-specific C :a35::a: probability G a:3::2:: matrix T :::::::: bits 2.6 ** * 2.3 ** * 2.1 ** * 1.8 ** * Relative 1.6 ** * ** Entropy 1.3 ** * ** (13.5 bits) 1.0 ** ***** 0.8 ** ***** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCAAAACA consensus CC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCVMAACA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12658585-12658705 85 5.52e-06 CAAAAACGAA GCGCAACA TTTATCAATT chrX:7097168-7097288 20 5.52e-06 TCTCACGTAG GCGCAACA CACACATATG chr3L:12387150-12387270 24 1.15e-05 ATAAATACGA GCCCAACA GATATGTCTG chr2L:2171395-2171515 75 1.15e-05 AATATTCTTG GCCCAACA ACAACTGCAA chr3L:6809636-6809756 68 2.26e-05 GTGGTCCGCG GCACAACA TATTTGCGCT chr2L:12045239-12045359 14 2.26e-05 CTATAAATAT GCACAACA GCACACCAAC chr3L:769189-769309 101 3.29e-05 TATTTTATAG GCGAAACA ATAATCCATA chr3R:21059748-21059868 64 3.29e-05 ATTGAAGCAG GCGAAACA AAACACTTGA chr2R:11098450-11098570 20 4.40e-05 TAAAATACAA GCCAAACA GAAAGCAGAA chr3L:3036989-3037109 59 4.40e-05 GCAAAAAGAA GCCAAACA AAGAAATCGA chr2L:21243953-21244073 5 4.40e-05 AAAG GCCAAACA CGTTCAAACC chrX:5917685-5917805 10 4.40e-05 TTATTTTTA GCCAAACA AAAGTTGTGT chr2R:21702076-21702196 66 6.76e-05 CATTCACCCT GCAAAACA CTGACTAACT chr3R:21190916-21191036 16 6.76e-05 AGAAGAAATT GCGCAGCA AAAATATTCT chrX:5904334-5904454 9 6.76e-05 CACACATT GCAAAACA CAAACAACAC chr3L:11788823-11788943 12 6.76e-05 ACAAACATCA GCAAAACA TTTTATCTTA chr3R:12723841-12723961 45 6.76e-05 ACCTAGCATT GCAAAACA TTACTGATAA chr3R:29841282-29841402 87 6.76e-05 TTCTCTGTCC GCGCAGCA TACACATATA chr2R:13430383-13430503 33 6.76e-05 GAAAATCATA GCAAAACA AAAAACTTTG chr3L:5172363-5172483 76 7.61e-05 AATTTTATGC GCACAGCA ACGACGAACA chr3L:11525809-11525929 113 7.61e-05 CAGTGATAAG GCACAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCVMAACA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12658585-12658705 5.5e-06 84_[+5]_28 chrX:7097168-7097288 5.5e-06 19_[+5]_93 chr3L:12387150-12387270 1.1e-05 23_[+5]_89 chr2L:2171395-2171515 1.1e-05 74_[+5]_38 chr3L:6809636-6809756 2.3e-05 67_[+5]_45 chr2L:12045239-12045359 2.3e-05 13_[+5]_99 chr3L:769189-769309 3.3e-05 100_[+5]_12 chr3R:21059748-21059868 3.3e-05 63_[+5]_49 chr2R:11098450-11098570 4.4e-05 19_[+5]_93 chr3L:3036989-3037109 4.4e-05 58_[+5]_54 chr2L:21243953-21244073 4.4e-05 4_[+5]_108 chrX:5917685-5917805 4.4e-05 9_[+5]_103 chr2R:21702076-21702196 6.8e-05 65_[+5]_47 chr3R:21190916-21191036 6.8e-05 15_[+5]_97 chrX:5904334-5904454 6.8e-05 8_[+5]_104 chr3L:11788823-11788943 6.8e-05 11_[+5]_101 chr3R:12723841-12723961 6.8e-05 44_[+5]_68 chr3R:29841282-29841402 6.8e-05 86_[+5]_26 chr2R:13430383-13430503 6.8e-05 32_[+5]_80 chr3L:5172363-5172483 7.6e-05 75_[+5]_37 chr3L:11525809-11525929 7.6e-05 112_[+5] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCVMAACA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCVMAACA width=8 seqs=21 chrX:12658585-12658705 ( 85) GCGCAACA 1 chrX:7097168-7097288 ( 20) GCGCAACA 1 chr3L:12387150-12387270 ( 24) GCCCAACA 1 chr2L:2171395-2171515 ( 75) GCCCAACA 1 chr3L:6809636-6809756 ( 68) GCACAACA 1 chr2L:12045239-12045359 ( 14) GCACAACA 1 chr3L:769189-769309 ( 101) GCGAAACA 1 chr3R:21059748-21059868 ( 64) GCGAAACA 1 chr2R:11098450-11098570 ( 20) GCCAAACA 1 chr3L:3036989-3037109 ( 59) GCCAAACA 1 chr2L:21243953-21244073 ( 5) GCCAAACA 1 chrX:5917685-5917805 ( 10) GCCAAACA 1 chr2R:21702076-21702196 ( 66) GCAAAACA 1 chr3R:21190916-21191036 ( 16) GCGCAGCA 1 chrX:5904334-5904454 ( 9) GCAAAACA 1 chr3L:11788823-11788943 ( 12) GCAAAACA 1 chr3R:12723841-12723961 ( 45) GCAAAACA 1 chr3R:29841282-29841402 ( 87) GCGCAGCA 1 chr2R:13430383-13430503 ( 33) GCAAAACA 1 chr3L:5172363-5172483 ( 76) GCACAGCA 1 chr3L:11525809-11525929 ( 113) GCACAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCVMAACA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6976 E= 8.3e+003 -1104 -1104 260 -1104 -1104 250 -1104 -1104 37 69 79 -1104 66 143 -1104 -1104 159 -1104 -1104 -1104 128 -1104 21 -1104 -1104 250 -1104 -1104 159 -1104 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCVMAACA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 8.3e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.285714 0.285714 0.000000 0.523810 0.476190 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.809524 0.000000 0.190476 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCVMAACA MEME-5 regular expression -------------------------------------------------------------------------------- GC[ACG][AC]AACA -------------------------------------------------------------------------------- Time 32.49 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22596476-22596596 7.11e-01 120 chrM:16017-16137 9.99e-01 120 chrM:19293-19413 1.00e+00 120 chr3R:14398757-14398877 1.56e-01 120 chr3R:25302283-25302403 5.69e-01 120 chrX:10764650-10764770 9.21e-01 120 chr3R:26882391-26882511 5.16e-01 120 chr3L:10863705-10863825 2.34e-03 37_[+4(1.36e-06)]_75 chr2L:4937201-4937321 7.20e-02 29_[+3(2.21e-05)]_83 chrX:9355535-9355655 9.27e-01 120 chr2L:5971564-5971684 7.44e-01 120 chrX:15070271-15070391 9.69e-01 120 chrM:15263-15383 1.00e+00 120 chr3L:13946140-13946260 1.77e-03 57_[+2(6.25e-06)]_55 chr3L:18007336-18007456 9.03e-01 120 chr2R:13006114-13006234 9.51e-03 120 chr2R:18398018-18398138 9.97e-01 120 chr2R:7775475-7775595 4.95e-01 120 chr3L:1971246-1971366 9.76e-01 120 chr2L:3648358-3648478 4.54e-01 120 chr2R:7724506-7724626 8.99e-01 120 chr3R:13843815-13843935 7.44e-01 120 chr3L:7530695-7530815 4.16e-01 120 chrX:7339238-7339358 4.35e-01 120 chrX:15869542-15869662 4.73e-01 120 chr3L:6369807-6369927 9.10e-01 120 chr3L:2171178-2171298 2.71e-02 63_[+4(1.36e-06)]_49 chr2L:13069897-13070017 2.68e-01 120 chr3L:15142912-15143032 1.00e+00 120 chr3R:4678892-4679012 3.44e-02 120 chr3R:13402056-13402176 4.61e-01 120 chr3L:3082663-3082783 9.85e-01 120 chr3R:8229395-8229515 8.09e-01 120 chr2L:8366643-8366763 9.11e-01 120 chr3R:17393225-17393345 9.23e-01 120 chr3R:13017437-13017557 2.19e-01 120 chrX:14802776-14802896 3.55e-02 120 chr3R:14736185-14736305 3.24e-01 120 chr4:132433-132553 9.94e-01 120 chr2L:10207156-10207276 5.61e-01 120 chr2R:10531542-10531662 1.09e-01 120 chr2R:11662332-11662452 1.67e-02 94_[+2(6.25e-06)]_18 chr2L:8906475-8906595 7.05e-02 120 chr2R:13430383-13430503 7.41e-02 32_[+5(6.76e-05)]_80 chr2R:18291693-18291813 1.72e-03 112_[+2(2.77e-06)] chr3R:13647723-13647843 2.19e-01 120 chr3R:23216367-23216487 6.71e-03 120 chr2R:11561737-11561857 1.25e-01 120 chr2R:10580897-10581017 5.01e-01 120 chr3L:10697698-10697818 4.17e-01 120 chr3L:2174483-2174603 7.50e-01 120 chr3R:20547620-20547740 6.53e-01 120 chr2L:5001749-5001869 2.42e-01 120 chr3R:21019129-21019249 9.93e-01 120 chrX:10764856-10764976 3.73e-01 120 chr3L:95949-96069 1.14e-01 120 chr3R:29841282-29841402 1.34e-02 86_[+5(6.76e-05)]_26 chr2L:13843985-13844105 9.94e-01 120 chr2L:19543248-19543368 6.71e-01 120 chr2R:19447094-19447214 9.52e-01 120 chr2R:11091787-11091907 3.76e-01 120 chr2L:19424918-19425038 1.36e-01 120 chr3R:27199051-27199171 2.72e-01 120 chr3R:6354502-6354622 8.07e-05 59_[+2(5.12e-05)]_53 chr3L:141266-141386 7.86e-01 120 chr3L:11233725-11233845 4.05e-01 120 chr3R:8228810-8228930 9.85e-01 120 chr2L:20830234-20830354 1.94e-01 120 chr2L:13576432-13576552 5.29e-01 120 chrX:7340986-7341106 7.81e-01 120 chrM:17035-17155 9.99e-01 120 chr2L:15275137-15275257 3.94e-03 35_[+3(1.48e-05)]_77 chrX:17532410-17532530 4.51e-02 120 chr3L:18812414-18812534 1.77e-01 120 chrX:13741253-13741373 2.41e-01 120 chr3R:14624998-14625118 7.08e-01 120 chr4:835389-835509 9.96e-01 120 chr2L:12644356-12644476 9.13e-01 120 chr3R:23995330-23995450 1.06e-01 120 chr2R:20580530-20580650 1.16e-02 75_[+4(1.41e-05)]_37 chr3L:17580078-17580198 9.97e-01 120 chr3L:22074736-22074856 9.95e-01 120 chr2L:8258453-8258573 5.54e-01 120 chr3L:1091181-1091301 1.47e-01 120 chr2L:14571500-14571620 5.17e-02 120 chr3R:28536842-28536962 2.15e-01 120 chrX:7314361-7314481 1.52e-01 120 chr2L:12045239-12045359 6.81e-02 13_[+5(2.26e-05)]_99 chr3R:20545266-20545386 7.57e-01 120 chr2L:13878341-13878461 1.63e-01 120 chrM:8364-8484 5.34e-01 120 chr2L:3642592-3642712 2.56e-01 120 chr2L:15272425-15272545 9.53e-01 120 chr3L:7376296-7376416 4.28e-01 120 chr3L:13951552-13951672 8.00e-02 120 chr3R:19224639-19224759 9.46e-01 120 chr2L:21574216-21574336 5.97e-01 120 chr2L:4812345-4812465 9.99e-01 120 chr3L:15547481-15547601 1.93e-02 24_[+2(5.52e-05)]_88 chr3L:3196869-3196989 4.47e-01 120 chr3R:13931927-13932047 9.99e-01 120 chr3L:14300186-14300306 1.26e-01 120 chr2R:19150603-19150723 8.12e-02 120 chr3R:31054653-31054773 9.59e-01 120 chr3L:8777635-8777755 4.49e-02 63_[+5(8.68e-05)]_49 chrX:8573332-8573452 1.52e-01 120 chr3L:17721208-17721328 2.59e-01 120 chr2L:6464923-6465043 3.63e-03 68_[+2(1.11e-05)]_44 chr3R:4187269-4187389 1.56e-03 56_[+3(3.80e-05)]_6_[+1(5.27e-05)]_\ 42 chr3L:18019074-18019194 5.92e-01 120 chr3L:11525809-11525929 3.10e-04 64_[+2(2.47e-05)]_40_[+5(7.61e-05)] chr3L:3252021-3252141 4.38e-01 120 chrX:5917685-5917805 1.22e-01 9_[+5(4.40e-05)]_103 chr3R:11449852-11449972 1.19e-01 120 chr3R:17061919-17062039 9.05e-06 10_[+2(1.45e-05)]_37_[+1(6.78e-06)]_\ 57 chr3L:5172363-5172483 3.37e-02 75_[+5(7.61e-05)]_37 chr4:866645-866765 8.53e-01 120 chr2L:381435-381555 1.00e-02 120 chr3R:20548669-20548789 6.72e-02 120 chr3R:4479050-4479170 1.36e-02 58_[+4(3.88e-06)]_54 chr3R:11805584-11805704 8.09e-02 120 chr3R:12723841-12723961 2.34e-03 44_[+5(6.76e-05)]_37_[+1(5.27e-05)]_\ 23 chr3L:6249305-6249425 6.99e-02 120 chrX:5031438-5031558 1.23e-02 84_[+1(5.44e-06)]_28 chr4:129193-129313 9.60e-01 120 chrM:4268-4388 1.00e+00 120 chr2L:21677940-21678060 4.22e-01 120 chr2L:21243953-21244073 2.11e-02 4_[+5(4.40e-05)]_108 chr3R:15198243-15198363 4.32e-01 120 chr3R:7089141-7089261 1.60e-01 120 chr2R:19450640-19450760 1.73e-01 120 chr3R:28677730-28677850 9.34e-01 120 chr2L:9707694-9707814 3.53e-02 120 chr2L:5978585-5978705 8.70e-02 120 chr3R:9365973-9366093 2.13e-01 120 chr3L:8058867-8058987 9.46e-01 120 chr2L:168692-168812 1.78e-03 27_[+3(4.97e-06)]_85 chr2R:9189930-9190050 4.08e-01 120 chr3L:20199660-20199780 7.69e-01 120 chr3R:20784503-20784623 4.72e-03 17_[+2(9.83e-06)]_95 chr3L:2577537-2577657 4.27e-02 48_[+1(9.36e-05)]_64 chr3L:17569863-17569983 2.80e-01 120 chr3R:19064187-19064307 1.18e-01 120 chr2L:2171395-2171515 4.08e-03 74_[+5(1.15e-05)]_38 chr2R:18658127-18658247 4.13e-01 120 chr3R:21059748-21059868 3.73e-03 63_[+5(3.29e-05)]_49 chrX:14810506-14810626 1.43e-01 120 chr3R:27580852-27580972 5.66e-02 120 chr2L:7437232-7437352 8.90e-01 120 chr3L:11788823-11788943 6.20e-02 11_[+5(6.76e-05)]_101 chrX:1577287-1577407 2.63e-01 120 chr2R:6517814-6517934 1.32e-01 120 chrX:2141139-2141259 9.64e-01 120 chr2R:25002112-25002232 8.62e-02 120 chr3R:30809058-30809178 1.57e-01 107_[+4(5.82e-05)]_5 chrX:11555091-11555211 2.16e-01 120 chr3R:4243277-4243397 8.70e-01 120 chr3L:17427318-17427438 4.87e-01 120 chr3L:6809636-6809756 6.84e-04 67_[+5(2.26e-05)]_45 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23_[+5(1.15e-05)]_89 chrX:21067973-21068093 9.38e-01 120 chr3R:9049315-9049435 3.20e-02 17_[+4(1.91e-05)]_95 chrX:7097168-7097288 1.57e-04 19_[+5(5.52e-06)]_93 chr3L:17563120-17563240 8.86e-01 120 chr2R:13980137-13980257 7.25e-01 120 chr3L:739431-739551 4.72e-01 120 chr3R:6421708-6421828 6.68e-02 120 chrX:12658585-12658705 1.99e-02 84_[+5(5.52e-06)]_28 chr3L:769189-769309 1.47e-03 100_[+5(3.29e-05)]_12 chr3L:5571220-5571340 2.60e-01 120 chr2L:3480622-3480742 9.57e-04 72_[+1(2.70e-06)]_40 chr2R:24237401-24237521 8.97e-01 120 chr2R:7013155-7013275 5.01e-01 120 chr3L:225423-225543 8.85e-02 120 chr2L:13289749-13289869 9.65e-03 22_[+1(5.44e-06)]_90 chrX:22487867-22487987 9.65e-01 120 chr2L:9981932-9982052 9.88e-01 120 chr3R:17059164-17059284 3.43e-05 61_[+1(2.70e-06)]_41_[+2(3.56e-05)]_\ 2 chr2L:6477134-6477254 9.04e-01 120 chr3L:10663221-10663341 1.30e-01 120 chr2L:3781235-3781355 5.87e-04 18_[+2(6.78e-07)]_94 chr3R:17404277-17404397 6.98e-02 43_[+3(8.92e-05)]_20_[+3(1.48e-05)]_\ 41 chr2L:9187470-9187590 3.01e-01 120 chr3L:3036989-3037109 2.48e-02 58_[+5(4.40e-05)]_54 chr3L:15116574-15116694 9.29e-01 120 chr3R:23191225-23191345 1.30e-02 120 chr2R:6143610-6143730 1.12e-01 120 chr3R:19166490-19166610 9.45e-01 120 chr3L:11247940-11248060 1.52e-03 15_[+3(4.97e-06)]_97 chr3R:14051310-14051430 8.30e-01 120 chr2L:8004282-8004402 2.08e-03 34_[+3(1.48e-05)]_78 chr3L:16610487-16610607 8.55e-01 120 chr2R:13409897-13410017 1.62e-02 1_[+2(2.21e-05)]_111 chr2L:18981644-18981764 7.75e-04 46_[+3(2.74e-05)]_66 chr3R:16982326-16982446 1.82e-02 120 chr3R:21190916-21191036 2.34e-02 15_[+5(6.76e-05)]_97 chr3L:18001968-18002088 1.32e-03 13_[+4(5.15e-06)]_99 chr2L:9526624-9526744 5.01e-02 120 chr2R:21702076-21702196 1.16e-01 65_[+5(6.76e-05)]_47 chr3L:17922832-17922952 8.47e-01 120 chr2R:11098450-11098570 1.00e-01 19_[+5(4.40e-05)]_93 chr3L:11623684-11623804 6.58e-05 6_[+2(2.21e-05)]_23_[+3(1.48e-05)]_\ 75 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************