******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/br.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:24053821-24053941 1.0000 120 chr3L:16064524-16064644 1.0000 120 chrX:1595866-1595986 1.0000 120 chrX:2049236-2049356 1.0000 120 chrX:1578250-1578370 1.0000 120 chrX:14949384-14949504 1.0000 120 chr2L:16889265-16889385 1.0000 120 chr2R:9077827-9077947 1.0000 120 chr3L:1968150-1968270 1.0000 120 chr3L:2428837-2428957 1.0000 120 chr2L:18843695-18843815 1.0000 120 chrX:2196182-2196302 1.0000 120 chrX:18404700-18404820 1.0000 120 chrX:1574419-1574539 1.0000 120 chr2R:17048909-17049029 1.0000 120 chr3R:19603172-19603292 1.0000 120 chr2R:10734318-10734438 1.0000 120 chr2L:121084-121204 1.0000 120 chr2L:5904712-5904832 1.0000 120 chr2R:24985883-24986003 1.0000 120 chrX:1565994-1566114 1.0000 120 chr2R:9915219-9915339 1.0000 120 chr2R:23723540-23723660 1.0000 120 chr2R:16720070-16720190 1.0000 120 chr3R:17116328-17116448 1.0000 120 chrX:1577243-1577363 1.0000 120 chr3L:5633788-5633908 1.0000 120 chr3R:20765808-20765928 1.0000 120 chr3L:3423083-3423203 1.0000 120 chr3L:3037120-3037240 1.0000 120 chr3R:27092317-27092437 1.0000 120 chr2R:6147668-6147788 1.0000 120 chr3R:8272705-8272825 1.0000 120 chr3R:31599727-31599847 1.0000 120 chrX:790296-790416 1.0000 120 chr3R:19859870-19859990 1.0000 120 chr3R:31308977-31309097 1.0000 120 chr3R:24039326-24039446 1.0000 120 chr3L:11242097-11242217 1.0000 120 chrX:2648119-2648239 1.0000 120 chrX:8667854-8667974 1.0000 120 chr2L:16271086-16271206 1.0000 120 chr3R:29165057-29165177 1.0000 120 chr2R:9926760-9926880 1.0000 120 chr3R:16010358-16010478 1.0000 120 chrX:1580546-1580666 1.0000 120 chr2L:650993-651113 1.0000 120 chrX:6030169-6030289 1.0000 120 chr3L:7792400-7792520 1.0000 120 chr2L:3004771-3004891 1.0000 120 chr2R:9746236-9746356 1.0000 120 chr2L:634295-634415 1.0000 120 chr3R:8142268-8142388 1.0000 120 chr2L:9619021-9619141 1.0000 120 chr2L:9438378-9438498 1.0000 120 chr3R:18742430-18742550 1.0000 120 chr2L:5084752-5084872 1.0000 120 chr3R:15457798-15457918 1.0000 120 chr3L:758614-758734 1.0000 120 chr2L:13968084-13968204 1.0000 120 chrX:6021593-6021713 1.0000 120 chr2L:11405624-11405744 1.0000 120 chr2R:24616160-24616280 1.0000 120 chr2L:5249903-5250023 1.0000 120 chr2L:700999-701119 1.0000 120 chr2R:11638361-11638481 1.0000 120 chr3L:3691743-3691863 1.0000 120 chr2L:382906-383026 1.0000 120 chr2L:5972206-5972326 1.0000 120 chr3R:13955383-13955503 1.0000 120 chr2R:10850059-10850179 1.0000 120 chr2R:6693132-6693252 1.0000 120 chr3R:29283260-29283380 1.0000 120 chr2R:14467098-14467218 1.0000 120 chr3R:29076158-29076278 1.0000 120 chr3R:27593270-27593390 1.0000 120 chr3R:9612418-9612538 1.0000 120 chr3R:21452199-21452319 1.0000 120 chr2R:16685693-16685813 1.0000 120 chr2R:22597012-22597132 1.0000 120 chr2R:23022698-23022818 1.0000 120 chr3L:3246818-3246938 1.0000 120 chr3R:27171176-27171296 1.0000 120 chr2L:3554051-3554171 1.0000 120 chrX:11600997-11601117 1.0000 120 chr2R:7013099-7013219 1.0000 120 chrX:3024972-3025092 1.0000 120 chr3L:1388244-1388364 1.0000 120 chrX:14750559-14750679 1.0000 120 chr3R:4873902-4874022 1.0000 120 chr3L:548462-548582 1.0000 120 chrX:20509693-20509813 1.0000 120 chr2L:9785939-9786059 1.0000 120 chr3R:9349570-9349690 1.0000 120 chrX:15500628-15500748 1.0000 120 chr2L:8697933-8698053 1.0000 120 chr3R:31878407-31878527 1.0000 120 chr3R:17053529-17053649 1.0000 120 chr3L:9897539-9897659 1.0000 120 chr2R:24981145-24981265 1.0000 120 chr3L:4619994-4620114 1.0000 120 chr3R:10579688-10579808 1.0000 120 chr2L:12113100-12113220 1.0000 120 chr3L:17577684-17577804 1.0000 120 chr3L:17913336-17913456 1.0000 120 chr3L:18038269-18038389 1.0000 120 chr2L:423319-423439 1.0000 120 chr3R:30280434-30280554 1.0000 120 chr2L:12719909-12720029 1.0000 120 chr2R:14782982-14783102 1.0000 120 chr2L:10144611-10144731 1.0000 120 chr2R:24836778-24836898 1.0000 120 chr2R:8659686-8659806 1.0000 120 chr3L:2386605-2386725 1.0000 120 chrX:2452928-2453048 1.0000 120 chr3R:10476086-10476206 1.0000 120 chrX:17814929-17815049 1.0000 120 chrX:13541299-13541419 1.0000 120 chr3L:1321323-1321443 1.0000 120 chr3L:761852-761972 1.0000 120 chr2R:23712055-23712175 1.0000 120 chr3L:13107466-13107586 1.0000 120 chr3R:30811350-30811470 1.0000 120 chr3L:3247019-3247139 1.0000 120 chr2R:6556953-6557073 1.0000 120 chr3R:11614601-11614721 1.0000 120 chr3R:22518448-22518568 1.0000 120 chr3L:1087479-1087599 1.0000 120 chr3R:22635901-22636021 1.0000 120 chr3R:16985663-16985783 1.0000 120 chrX:10728201-10728321 1.0000 120 chrX:14134100-14134220 1.0000 120 chr2R:20136850-20136970 1.0000 120 chr2L:2873511-2873631 1.0000 120 chr2R:6115363-6115483 1.0000 120 chr3L:388293-388413 1.0000 120 chr2L:11328529-11328649 1.0000 120 chr3R:30800460-30800580 1.0000 120 chr2R:22681018-22681138 1.0000 120 chr2R:6145916-6146036 1.0000 120 chr2L:8229762-8229882 1.0000 120 chr2L:7376306-7376426 1.0000 120 chr2L:1668851-1668971 1.0000 120 chr3L:4357829-4357949 1.0000 120 chr3R:27129782-27129902 1.0000 120 chr3L:21252701-21252821 1.0000 120 chr3L:664019-664139 1.0000 120 chr2R:14109832-14109952 1.0000 120 chrX:17490001-17490121 1.0000 120 chr2R:14908150-14908270 1.0000 120 chrX:17760688-17760808 1.0000 120 chr3R:23191572-23191692 1.0000 120 chr3L:21594552-21594672 1.0000 120 chr2L:301498-301618 1.0000 120 chr3R:9768396-9768516 1.0000 120 chr2L:11306242-11306362 1.0000 120 chrX:768029-768149 1.0000 120 chr3L:12616575-12616695 1.0000 120 chr2L:7973984-7974104 1.0000 120 chr2R:18209787-18209907 1.0000 120 chr3R:5331845-5331965 1.0000 120 chr3L:817844-817964 1.0000 120 chr2L:19454465-19454585 1.0000 120 chr3R:25633987-25634107 1.0000 120 chr3L:1336475-1336595 1.0000 120 chrX:8730453-8730573 1.0000 120 chr3R:10530718-10530838 1.0000 120 chrX:8601275-8601395 1.0000 120 chr3R:10466495-10466615 1.0000 120 chrX:11715089-11715209 1.0000 120 chrX:15335967-15336087 1.0000 120 chr3R:23888820-23888940 1.0000 120 chr3R:8116140-8116260 1.0000 120 chr3R:22628063-22628183 1.0000 120 chr3R:9913572-9913692 1.0000 120 chr3R:29538604-29538724 1.0000 120 chr3L:660464-660584 1.0000 120 chr2R:22179643-22179763 1.0000 120 chr2L:18628172-18628292 1.0000 120 chr3L:18672363-18672483 1.0000 120 chr2R:18271196-18271316 1.0000 120 chr2L:13082328-13082448 1.0000 120 chr2R:10806575-10806695 1.0000 120 chrX:5026130-5026250 1.0000 120 chr3L:8157104-8157224 1.0000 120 chr3L:728027-728147 1.0000 120 chr2L:10615915-10616035 1.0000 120 chr2R:14247588-14247708 1.0000 120 chr3R:8029720-8029840 1.0000 120 chr3L:6285546-6285666 1.0000 120 chr3R:23486871-23486991 1.0000 120 chr3R:18481145-18481265 1.0000 120 chr3L:14564512-14564632 1.0000 120 chr2R:22559626-22559746 1.0000 120 chrX:1826176-1826296 1.0000 120 chr2L:18954334-18954454 1.0000 120 chr2R:15513519-15513639 1.0000 120 chr3L:9742549-9742669 1.0000 120 chr3R:30281403-30281523 1.0000 120 chr2L:3341671-3341791 1.0000 120 chrX:3411967-3412087 1.0000 120 chrX:17571044-17571164 1.0000 120 chr3L:10681969-10682089 1.0000 120 chr2L:5003184-5003304 1.0000 120 chr3L:16796769-16796889 1.0000 120 chrX:7526237-7526357 1.0000 120 chr3R:6397931-6398051 1.0000 120 chr3R:25461800-25461920 1.0000 120 chr2L:7992045-7992165 1.0000 120 chr3L:17502361-17502481 1.0000 120 chr3R:26507985-26508105 1.0000 120 chr3R:30134834-30134954 1.0000 120 chr2L:10616115-10616235 1.0000 120 chr3R:31225180-31225300 1.0000 120 chr3L:11322605-11322725 1.0000 120 chr3R:29064918-29065038 1.0000 120 chr2R:6880966-6881086 1.0000 120 chr3R:5100489-5100609 1.0000 120 chr3L:17973259-17973379 1.0000 120 chr2R:24964096-24964216 1.0000 120 chr2R:24548143-24548263 1.0000 120 chr2R:17836017-17836137 1.0000 120 chrX:5923275-5923395 1.0000 120 chr3R:22175849-22175969 1.0000 120 chr3R:26588205-26588325 1.0000 120 chr3L:3626252-3626372 1.0000 120 chr3R:13841097-13841217 1.0000 120 chr3R:4810085-4810205 1.0000 120 chr3L:9381740-9381860 1.0000 120 chr2L:3787117-3787237 1.0000 120 chr3R:4403840-4403960 1.0000 120 chrX:17551012-17551132 1.0000 120 chr2L:3647637-3647757 1.0000 120 chr3R:23374436-23374556 1.0000 120 chr3L:13021907-13022027 1.0000 120 chr2L:7790587-7790707 1.0000 120 chr3L:14055311-14055431 1.0000 120 chr3L:777413-777533 1.0000 120 chrX:5897185-5897305 1.0000 120 chr2R:24629564-24629684 1.0000 120 chr2L:1911458-1911578 1.0000 120 chr2R:21569764-21569884 1.0000 120 chrX:17856893-17857013 1.0000 120 chr2L:7320093-7320213 1.0000 120 chr3R:19283672-19283792 1.0000 120 chr3L:14083386-14083506 1.0000 120 chr2L:5493084-5493204 1.0000 120 chr3L:12410932-12411052 1.0000 120 chr3R:15634282-15634402 1.0000 120 chr3R:15899753-15899873 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_br/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/br.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.308 C 0.194 G 0.187 T 0.311 Background letter frequencies (from file dataset with add-one prior applied): A 0.308 C 0.194 G 0.187 T 0.311 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GSGGGGGC MEME-1 width = 8 sites = 17 llr = 165 E-value = 9.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSGGGGGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:2::::: pos.-specific C :4:121:9 probability G 968989a: matrix T :11::::1 bits 2.4 * 2.2 ** 1.9 * ** 1.7 * ***** Relative 1.4 * ***** Entropy 1.2 ******** (14.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGGGC consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGGGGGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3691743-3691863 33 1.55e-06 TATTCTGGTT GGGGGGGC ATTAGCAGCT chr3L:1968150-1968270 95 1.55e-06 AATCGAGGGG GGGGGGGC AACTCCGCCC chr3R:29064918-29065038 36 4.77e-06 ATGAATGCAA GGGGCGGC CATCCGCTCT chr2L:301498-301618 89 6.44e-06 CGTAGACCGA GCGGCGGC CAAAATACGC chr2R:24985883-24986003 75 6.44e-06 GGTTATCAGT GCGGCGGC AGCGGCGTCG chr3R:31225180-31225300 84 8.99e-06 GACAAACCGA GGAGGGGC ACCTGTTATT chr2R:24616160-24616280 72 1.06e-05 AGGTAAATAA GGGCGGGC AATTGTTTAC chr2R:10806575-10806695 94 1.57e-05 GGTAAAAGCG GCAGGGGC GTACGGGTAA chr3L:21252701-21252821 30 1.57e-05 CGACCGAACT GCAGGGGC GGATCAGGGC chr2L:5972206-5972326 109 1.57e-05 AGACATGGTT GGGGGGGT TGTG chr3R:30280434-30280554 13 1.83e-05 CTGAACGACA AGGGGGGC CTTAATATTT chr2L:8697933-8698053 27 1.83e-05 TATGTGTGAT AGGGGGGC TCAGGCTGCC chr2R:22597012-22597132 27 2.42e-05 GTCGGCCAAG GTGGGGGC CAAGCAATTC chr3L:3626252-3626372 14 2.67e-05 GGGTTAAGCG GCGGGGGT TAAGCGGCAG chr3L:17913336-17913456 27 3.46e-05 TGGTGGTGCG GGTGGGGC ATTGGCATCG chrX:11600997-11601117 8 3.80e-05 CTTCAAT GGGCCGGC GGGCGAAAAC chr2R:9915219-9915339 93 3.80e-05 GCAAATATTG GCGGGCGC GTTTACCCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGGGGGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3691743-3691863 1.6e-06 32_[+1]_80 chr3L:1968150-1968270 1.6e-06 94_[+1]_18 chr3R:29064918-29065038 4.8e-06 35_[+1]_77 chr2L:301498-301618 6.4e-06 88_[+1]_24 chr2R:24985883-24986003 6.4e-06 74_[+1]_38 chr3R:31225180-31225300 9e-06 83_[+1]_29 chr2R:24616160-24616280 1.1e-05 71_[+1]_41 chr2R:10806575-10806695 1.6e-05 93_[+1]_19 chr3L:21252701-21252821 1.6e-05 29_[+1]_83 chr2L:5972206-5972326 1.6e-05 108_[+1]_4 chr3R:30280434-30280554 1.8e-05 12_[+1]_100 chr2L:8697933-8698053 1.8e-05 26_[+1]_86 chr2R:22597012-22597132 2.4e-05 26_[+1]_86 chr3L:3626252-3626372 2.7e-05 13_[+1]_99 chr3L:17913336-17913456 3.5e-05 26_[+1]_86 chrX:11600997-11601117 3.8e-05 7_[+1]_105 chr2R:9915219-9915339 3.8e-05 92_[+1]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGGGGGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSGGGGGC width=8 seqs=17 chr3L:3691743-3691863 ( 33) GGGGGGGC 1 chr3L:1968150-1968270 ( 95) GGGGGGGC 1 chr3R:29064918-29065038 ( 36) GGGGCGGC 1 chr2L:301498-301618 ( 89) GCGGCGGC 1 chr2R:24985883-24986003 ( 75) GCGGCGGC 1 chr3R:31225180-31225300 ( 84) GGAGGGGC 1 chr2R:24616160-24616280 ( 72) GGGCGGGC 1 chr2R:10806575-10806695 ( 94) GCAGGGGC 1 chr3L:21252701-21252821 ( 30) GCAGGGGC 1 chr2L:5972206-5972326 ( 109) GGGGGGGT 1 chr3R:30280434-30280554 ( 13) AGGGGGGC 1 chr2L:8697933-8698053 ( 27) AGGGGGGC 1 chr2R:22597012-22597132 ( 27) GTGGGGGC 1 chr3L:3626252-3626372 ( 14) GCGGGGGT 1 chr3L:17913336-17913456 ( 27) GGTGGGGC 1 chrX:11600997-11601117 ( 8) GGGCCGGC 1 chr2R:9915219-9915339 ( 93) GCGGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGGGGGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4638 E= 9.6e+001 -139 -1073 223 -1073 -1073 86 165 -240 -80 -1073 203 -240 -1073 -72 223 -1073 -1073 28 203 -1073 -1073 -172 233 -1073 -1073 -1073 241 -1073 -1073 219 -1073 -140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGGGGGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 9.6e+001 0.117647 0.000000 0.882353 0.000000 0.000000 0.352941 0.588235 0.058824 0.176471 0.000000 0.764706 0.058824 0.000000 0.117647 0.882353 0.000000 0.000000 0.235294 0.764706 0.000000 0.000000 0.058824 0.941176 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.882353 0.000000 0.117647 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGGGGGC MEME-1 regular expression -------------------------------------------------------------------------------- G[GC]GG[GC]GGC -------------------------------------------------------------------------------- Time 7.85 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCGCAG MEME-2 width = 8 sites = 9 llr = 98 E-value = 2.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCGCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :9::::8: pos.-specific C a11a:a21 probability G ::9:a::9 matrix T :::::::: bits 2.4 * *** 2.2 * *** 1.9 * **** * 1.7 * **** * Relative 1.4 * **** * Entropy 1.2 ****** * (15.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCGCAG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGCAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3626252-3626372 113 4.53e-06 CGGTTCCCGC CAGCGCAG chr2R:6145916-6146036 70 4.53e-06 GTGCAAAcag cagcgcag caacaacaac chrX:2648119-2648239 10 4.53e-06 TTGATCTCC CAGCGCAG TGGAGCCAAA chr2R:24985883-24986003 4 4.53e-06 CGA CAGCGCAG TCGGCGCCGG chr3L:9381740-9381860 73 7.38e-06 CGCACACACA CAGCGCCG ACGGGCGCAC chr3L:21252701-21252821 63 7.38e-06 CGGGGTGCAG CAGCGCCG AAGCCAGGAA chr2R:6880966-6881086 37 1.02e-05 TTAGTCAATT CCGCGCAG TTTGACGGAA chr3L:10681969-10682089 24 1.96e-05 ctgtcgctct cACCGCAG CCACACTCAA chr3L:2428837-2428957 13 1.96e-05 AACGAAAACG CAGCGCAC ACACACAGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGCAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3626252-3626372 4.5e-06 112_[+2] chr2R:6145916-6146036 4.5e-06 69_[+2]_43 chrX:2648119-2648239 4.5e-06 9_[+2]_103 chr2R:24985883-24986003 4.5e-06 3_[+2]_109 chr3L:9381740-9381860 7.4e-06 72_[+2]_40 chr3L:21252701-21252821 7.4e-06 62_[+2]_50 chr2R:6880966-6881086 1e-05 36_[+2]_76 chr3L:10681969-10682089 2e-05 23_[+2]_89 chr3L:2428837-2428957 2e-05 12_[+2]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGCAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCGCAG width=8 seqs=9 chr3L:3626252-3626372 ( 113) CAGCGCAG 1 chr2R:6145916-6146036 ( 70) CAGCGCAG 1 chrX:2648119-2648239 ( 10) CAGCGCAG 1 chr2R:24985883-24986003 ( 4) CAGCGCAG 1 chr3L:9381740-9381860 ( 73) CAGCGCCG 1 chr3L:21252701-21252821 ( 63) CAGCGCCG 1 chr2R:6880966-6881086 ( 37) CCGCGCAG 1 chr3L:10681969-10682089 ( 24) CACCGCAG 1 chr3L:2428837-2428957 ( 13) CAGCGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4638 E= 2.1e+003 -982 237 -982 -982 153 -80 -982 -982 -982 -80 224 -982 -982 237 -982 -982 -982 -982 241 -982 -982 237 -982 -982 134 20 -982 -982 -982 -80 224 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.1e+003 0.000000 1.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.777778 0.222222 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGCAG MEME-2 regular expression -------------------------------------------------------------------------------- CAGCGC[AC]G -------------------------------------------------------------------------------- Time 14.40 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGCCSC MEME-3 width = 8 sites = 18 llr = 175 E-value = 2.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGCCSC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:1:::1: pos.-specific C :a91a95a probability G 7::8::4: matrix T 2::2:1:: bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 ** ** * Relative 1.4 ***** * Entropy 1.2 ****** * (14.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCGCCCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCSC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:16889265-16889385 79 1.86e-06 TTGTCACTCC GCCGCCCC GGTGAAGATA chrX:11715089-11715209 5 3.66e-06 ctct gccgccgc tctgccatcg chr3R:22518448-22518568 48 3.66e-06 ACCACCCCTC GCCGCCGC CCACAGTGGG chr2R:14109832-14109952 97 6.62e-06 GTTTACCTTG GCCGCCAC TCGACTGTCA chr3L:3691743-3691863 54 6.62e-06 AGCAGCTATA GCCGCCAC ATACTACATG chr3R:27129782-27129902 92 9.72e-06 ACGTTGACTC TCCGCCCC AAAAGCCCAA chr3L:1968150-1968270 106 9.72e-06 GGGGGGCAAC TCCGCCCC CTTAGTC chr3L:17973259-17973379 29 1.28e-05 TCTCTTTGTG GCCTCCCC CTTTTTTCGA chr3L:548462-548582 66 1.28e-05 TTCCCCCAGC GCCTCCCC TTTTTATTGT chr2R:23712055-23712175 66 1.58e-05 CTTCCCCCAC TCCGCCGC TGTAATGCAA chr2R:24964096-24964216 13 1.88e-05 GCTGTGATTT GCCTCCGC TGGCTCACTC chrX:13541299-13541419 9 2.19e-05 TCAACTAC ACCGCCCC CTTGGAGGCC chr3L:18672363-18672483 61 3.08e-05 TGACATGCCG GCCGCTCC GTGCGATCCG chr3R:22635901-22636021 94 3.08e-05 CGAAAGTGAA ACCGCCGC AAACGGACGA chr3L:2428837-2428957 29 3.08e-05 ACACACACAG GCAGCCCC GAGTTCTAGA chr3L:17913336-17913456 51 3.84e-05 ATCGAGCACA GCCCCCCC AAAAACGCAG chrX:8667854-8667974 37 3.84e-05 ATTTATGCTT GCAGCCGC ATAACAATCT chr3R:24053821-24053941 64 3.84e-05 ACAAGCGCGT GCCGCTGC CGACGACAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCSC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:16889265-16889385 1.9e-06 78_[+3]_34 chrX:11715089-11715209 3.7e-06 4_[+3]_108 chr3R:22518448-22518568 3.7e-06 47_[+3]_65 chr2R:14109832-14109952 6.6e-06 96_[+3]_16 chr3L:3691743-3691863 6.6e-06 53_[+3]_59 chr3R:27129782-27129902 9.7e-06 91_[+3]_21 chr3L:1968150-1968270 9.7e-06 105_[+3]_7 chr3L:17973259-17973379 1.3e-05 28_[+3]_84 chr3L:548462-548582 1.3e-05 65_[+3]_47 chr2R:23712055-23712175 1.6e-05 65_[+3]_47 chr2R:24964096-24964216 1.9e-05 12_[+3]_100 chrX:13541299-13541419 2.2e-05 8_[+3]_104 chr3L:18672363-18672483 3.1e-05 60_[+3]_52 chr3R:22635901-22636021 3.1e-05 93_[+3]_19 chr3L:2428837-2428957 3.1e-05 28_[+3]_84 chr3L:17913336-17913456 3.8e-05 50_[+3]_62 chrX:8667854-8667974 3.8e-05 36_[+3]_76 chr3R:24053821-24053941 3.8e-05 63_[+3]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCSC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGCCSC width=8 seqs=18 chr2L:16889265-16889385 ( 79) GCCGCCCC 1 chrX:11715089-11715209 ( 5) GCCGCCGC 1 chr3R:22518448-22518568 ( 48) GCCGCCGC 1 chr2R:14109832-14109952 ( 97) GCCGCCAC 1 chr3L:3691743-3691863 ( 54) GCCGCCAC 1 chr3R:27129782-27129902 ( 92) TCCGCCCC 1 chr3L:1968150-1968270 ( 106) TCCGCCCC 1 chr3L:17973259-17973379 ( 29) GCCTCCCC 1 chr3L:548462-548582 ( 66) GCCTCCCC 1 chr2R:23712055-23712175 ( 66) TCCGCCGC 1 chr2R:24964096-24964216 ( 13) GCCTCCGC 1 chrX:13541299-13541419 ( 9) ACCGCCCC 1 chr3L:18672363-18672483 ( 61) GCCGCTCC 1 chr3R:22635901-22636021 ( 94) ACCGCCGC 1 chr3L:2428837-2428957 ( 29) GCAGCCCC 1 chr3L:17913336-17913456 ( 51) GCCCCCCC 1 chrX:8667854-8667974 ( 37) GCAGCCGC 1 chr3R:24053821-24053941 ( 64) GCCGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCSC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7495 E= 2.0e+002 -147 -1081 195 -90 -1081 237 -1081 -1081 -147 220 -1081 -1081 -1081 -180 205 -90 -1081 237 -1081 -1081 -1081 220 -1081 -148 -147 137 105 -1081 -1081 237 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCSC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 2.0e+002 0.111111 0.000000 0.722222 0.166667 0.000000 1.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.000000 0.055556 0.777778 0.166667 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.111111 0.500000 0.388889 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCSC MEME-3 regular expression -------------------------------------------------------------------------------- GCCGCC[CG]C -------------------------------------------------------------------------------- Time 20.98 secs. ******************************************************************************** ******************************************************************************** MOTIF CRAGTGTG MEME-4 width = 8 sites = 12 llr = 124 E-value = 1.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRAGTGTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :3a::::: pos.-specific C 81:::::: probability G 26:a:a:a matrix T ::::a:a: bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * ****** Relative 1.4 * ****** Entropy 1.2 * ****** (14.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGAGTGTG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRAGTGTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:10466495-10466615 73 7.07e-06 ACATATTTTT CGAGTGTG CAGTAGCAGT chr3L:4357829-4357949 109 7.07e-06 CATTGAACGC CGAGTGTG GATC chr2L:423319-423439 98 7.07e-06 TTTTTTTTTT CGAGTGTG ACAACTAAAG chr3R:17053529-17053649 99 7.07e-06 CAGCATGAAG CGAGTGTG GGTGTGCGTG chr3R:24039326-24039446 31 7.07e-06 TGTTGTCTGT CGAGTGTG AGAATCAATA chr3L:9742549-9742669 108 1.87e-05 TTCATTTTTT CAAGTGTG TGAGC chr2L:1668851-1668971 81 1.87e-05 AGACAGGGCA CAAGTGTG TTTTCATGGC chr3L:3247019-3247139 103 1.87e-05 GAGATTTGCA CAAGTGTG CAGAAGACAG chr2R:9746236-9746356 54 1.87e-05 ATATCTTCTA CAAGTGTG AACCATAAAT chr2R:24616160-24616280 107 2.55e-05 CTGAGTGGGT GGAGTGTG CACTCG chr2R:9926760-9926880 92 2.55e-05 AAAAGCGGGC GGAGTGTG GGGGAGGGAG chr3L:13021907-13022027 104 3.29e-05 TTTTGGGACG CCAGTGTG CTCTTGTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRAGTGTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10466495-10466615 7.1e-06 72_[+4]_40 chr3L:4357829-4357949 7.1e-06 108_[+4]_4 chr2L:423319-423439 7.1e-06 97_[+4]_15 chr3R:17053529-17053649 7.1e-06 98_[+4]_14 chr3R:24039326-24039446 7.1e-06 30_[+4]_82 chr3L:9742549-9742669 1.9e-05 107_[+4]_5 chr2L:1668851-1668971 1.9e-05 80_[+4]_32 chr3L:3247019-3247139 1.9e-05 102_[+4]_10 chr2R:9746236-9746356 1.9e-05 53_[+4]_59 chr2R:24616160-24616280 2.6e-05 106_[+4]_6 chr2R:9926760-9926880 2.6e-05 91_[+4]_21 chr3L:13021907-13022027 3.3e-05 103_[+4]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRAGTGTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRAGTGTG width=8 seqs=12 chr3R:10466495-10466615 ( 73) CGAGTGTG 1 chr3L:4357829-4357949 ( 109) CGAGTGTG 1 chr2L:423319-423439 ( 98) CGAGTGTG 1 chr3R:17053529-17053649 ( 99) CGAGTGTG 1 chr3R:24039326-24039446 ( 31) CGAGTGTG 1 chr3L:9742549-9742669 ( 108) CAAGTGTG 1 chr2L:1668851-1668971 ( 81) CAAGTGTG 1 chr3L:3247019-3247139 ( 103) CAAGTGTG 1 chr2R:9746236-9746356 ( 54) CAAGTGTG 1 chr2R:24616160-24616280 ( 107) GGAGTGTG 1 chr2R:9926760-9926880 ( 92) GGAGTGTG 1 chr3L:13021907-13022027 ( 104) CCAGTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRAGTGTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3003 E= 1.3e+003 -1023 210 -17 -1023 11 -122 164 -1023 170 -1023 -1023 -1023 -1023 -1023 241 -1023 -1023 -1023 -1023 169 -1023 -1023 241 -1023 -1023 -1023 -1023 169 -1023 -1023 241 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRAGTGTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.3e+003 0.000000 0.833333 0.166667 0.000000 0.333333 0.083333 0.583333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRAGTGTG MEME-4 regular expression -------------------------------------------------------------------------------- C[GA]AGTGTG -------------------------------------------------------------------------------- Time 27.46 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGGCCCM MEME-5 width = 8 sites = 11 llr = 116 E-value = 7.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGGCCCM MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::5 pos.-specific C a:::a875 probability G :7aa:23: matrix T :3:::::: bits 2.4 * *** 2.2 * *** 1.9 * *** 1.7 * **** Relative 1.4 ******* Entropy 1.2 ******* (15.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGGGCCCA consensus T GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCCCM MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:1321323-1321443 52 1.80e-06 AAGAAAACAG CGGGCCCC AGTGATTGTT chr2R:9926760-9926880 14 1.80e-06 TTTGAGTTCT CGGGCCCC GAGTCACCTA chr2L:10144611-10144731 27 4.65e-06 CATCCATGAG CGGGCCCA GAAAAAAGAA chr2R:24981145-24981265 53 4.65e-06 CAGTACCCGT CGGGCCCA AATGTTTACA chr3R:31599727-31599847 23 9.13e-06 AGAAAACAAC CGGGCCGA AATAGAAATC chr3L:1968150-1968270 31 9.13e-06 GGCTGGAAGT CGGGCCGA TCGACAGACG chr3R:4810085-4810205 4 1.39e-05 aca cgggcgcc agcgaaccca chr2L:18628172-18628292 62 1.39e-05 GCAAAATGCA CTGGCCCC TAAACGAGTA chrX:768029-768149 14 1.39e-05 TTGTTTGTGT CTGGCCCC CATCCTCCCT chr3L:9381740-9381860 82 2.13e-05 ACAGCGCCGA CGGGCGCA CGCACACTAC chr3R:16010358-16010478 50 3.31e-05 ATACTGTCAA CTGGCCGA GAACACTTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCCCM MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1321323-1321443 1.8e-06 51_[+5]_61 chr2R:9926760-9926880 1.8e-06 13_[+5]_99 chr2L:10144611-10144731 4.6e-06 26_[+5]_86 chr2R:24981145-24981265 4.6e-06 52_[+5]_60 chr3R:31599727-31599847 9.1e-06 22_[+5]_90 chr3L:1968150-1968270 9.1e-06 30_[+5]_82 chr3R:4810085-4810205 1.4e-05 3_[+5]_109 chr2L:18628172-18628292 1.4e-05 61_[+5]_51 chrX:768029-768149 1.4e-05 13_[+5]_99 chr3L:9381740-9381860 2.1e-05 81_[+5]_31 chr3R:16010358-16010478 3.3e-05 49_[+5]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCCCM MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGGCCCM width=8 seqs=11 chr3L:1321323-1321443 ( 52) CGGGCCCC 1 chr2R:9926760-9926880 ( 14) CGGGCCCC 1 chr2L:10144611-10144731 ( 27) CGGGCCCA 1 chr2R:24981145-24981265 ( 53) CGGGCCCA 1 chr3R:31599727-31599847 ( 23) CGGGCCGA 1 chr3L:1968150-1968270 ( 31) CGGGCCGA 1 chr3R:4810085-4810205 ( 4) CGGGCGCC 1 chr2L:18628172-18628292 ( 62) CTGGCCCC 1 chrX:768029-768149 ( 14) CTGGCCCC 1 chr3L:9381740-9381860 ( 82) CGGGCGCA 1 chr3R:16010358-16010478 ( 50) CTGGCCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCCCM MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6812 E= 7.7e+003 -1010 237 -1010 -1010 -1010 -1010 195 -19 -1010 -1010 241 -1010 -1010 -1010 241 -1010 -1010 237 -1010 -1010 -1010 208 -4 -1010 -1010 191 54 -1010 82 123 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCCCM MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 7.7e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.727273 0.272727 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.818182 0.181818 0.000000 0.000000 0.727273 0.272727 0.000000 0.545455 0.454545 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCCCM MEME-5 regular expression -------------------------------------------------------------------------------- C[GT]GGCC[CG][AC] -------------------------------------------------------------------------------- Time 33.92 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:24053821-24053941 1.43e-03 63_[+3(3.84e-05)]_49 chr3L:16064524-16064644 9.98e-01 120 chrX:1595866-1595986 3.05e-03 120 chrX:2049236-2049356 2.81e-01 120 chrX:1578250-1578370 2.83e-01 120 chrX:14949384-14949504 2.18e-01 120 chr2L:16889265-16889385 1.60e-03 78_[+3(1.86e-06)]_34 chr2R:9077827-9077947 6.56e-01 120 chr3L:1968150-1968270 6.94e-08 30_[+5(9.13e-06)]_56_[+1(1.55e-06)]_\ 3_[+3(9.72e-06)]_7 chr3L:2428837-2428957 3.92e-04 12_[+2(1.96e-05)]_8_[+3(3.08e-05)]_\ 84 chr2L:18843695-18843815 2.17e-03 18_[+2(5.73e-05)]_50_[+3(8.96e-05)]_\ 36 chrX:2196182-2196302 6.25e-01 120 chrX:18404700-18404820 3.44e-01 120 chrX:1574419-1574539 2.24e-02 120 chr2R:17048909-17049029 5.65e-01 120 chr3R:19603172-19603292 5.83e-01 120 chr2R:10734318-10734438 7.68e-03 120 chr2L:121084-121204 4.15e-01 120 chr2L:5904712-5904832 6.12e-01 120 chr2R:24985883-24986003 1.08e-05 3_[+2(4.53e-06)]_3_[+1(5.03e-05)]_\ 52_[+1(6.44e-06)]_38 chrX:1565994-1566114 2.69e-02 106_[+2(9.46e-05)]_6 chr2R:9915219-9915339 8.93e-03 92_[+1(3.80e-05)]_20 chr2R:23723540-23723660 8.17e-01 120 chr2R:16720070-16720190 8.87e-01 120 chr3R:17116328-17116448 8.24e-01 120 chrX:1577243-1577363 7.52e-01 120 chr3L:5633788-5633908 7.92e-01 120 chr3R:20765808-20765928 1.33e-02 99_[+3(5.02e-05)]_13 chr3L:3423083-3423203 9.96e-01 120 chr3L:3037120-3037240 3.89e-01 120 chr3R:27092317-27092437 8.69e-01 120 chr2R:6147668-6147788 1.00e+00 120 chr3R:8272705-8272825 9.52e-01 120 chr3R:31599727-31599847 2.18e-03 22_[+5(9.13e-06)]_90 chrX:790296-790416 7.29e-01 120 chr3R:19859870-19859990 3.56e-03 120 chr3R:31308977-31309097 8.92e-01 120 chr3R:24039326-24039446 2.13e-04 30_[+4(7.07e-06)]_82 chr3L:11242097-11242217 3.23e-01 120 chrX:2648119-2648239 1.96e-03 9_[+2(4.53e-06)]_103 chrX:8667854-8667974 7.69e-03 36_[+3(3.84e-05)]_76 chr2L:16271086-16271206 2.59e-01 120 chr3R:29165057-29165177 9.93e-01 120 chr2R:9926760-9926880 8.60e-07 13_[+5(1.80e-06)]_70_[+4(2.55e-05)]_\ 21 chr3R:16010358-16010478 1.55e-01 49_[+5(3.31e-05)]_63 chrX:1580546-1580666 3.59e-01 120 chr2L:650993-651113 9.69e-01 120 chrX:6030169-6030289 4.72e-01 120 chr3L:7792400-7792520 4.37e-01 120 chr2L:3004771-3004891 4.47e-01 120 chr2R:9746236-9746356 1.98e-03 53_[+4(1.87e-05)]_59 chr2L:634295-634415 7.03e-01 120 chr3R:8142268-8142388 1.00e+00 120 chr2L:9619021-9619141 1.15e-01 120 chr2L:9438378-9438498 3.16e-01 120 chr3R:18742430-18742550 9.74e-01 120 chr2L:5084752-5084872 2.71e-02 79_[+4(4.41e-05)]_33 chr3R:15457798-15457918 9.91e-01 120 chr3L:758614-758734 1.00e+00 120 chr2L:13968084-13968204 8.86e-01 120 chrX:6021593-6021713 8.42e-02 120 chr2L:11405624-11405744 8.29e-01 120 chr2R:24616160-24616280 3.80e-04 71_[+1(1.06e-05)]_27_[+4(2.55e-05)]_\ 6 chr2L:5249903-5250023 3.35e-02 103_[+4(5.11e-05)]_9 chr2L:700999-701119 9.30e-01 120 chr2R:11638361-11638481 9.11e-01 120 chr3L:3691743-3691863 8.33e-05 32_[+1(1.55e-06)]_13_[+3(6.62e-06)]_\ 59 chr2L:382906-383026 7.79e-01 120 chr2L:5972206-5972326 9.53e-03 108_[+1(1.57e-05)]_4 chr3R:13955383-13955503 9.99e-01 120 chr2R:10850059-10850179 8.51e-01 120 chr2R:6693132-6693252 4.70e-01 120 chr3R:29283260-29283380 2.16e-01 120 chr2R:14467098-14467218 9.86e-01 120 chr3R:29076158-29076278 9.92e-01 120 chr3R:27593270-27593390 1.38e-01 120 chr3R:9612418-9612538 9.28e-01 120 chr3R:21452199-21452319 8.75e-02 120 chr2R:16685693-16685813 8.34e-01 120 chr2R:22597012-22597132 2.66e-02 26_[+1(2.42e-05)]_86 chr2R:23022698-23022818 6.12e-01 120 chr3L:3246818-3246938 9.77e-01 120 chr3R:27171176-27171296 4.88e-01 120 chr2L:3554051-3554171 4.27e-01 120 chrX:11600997-11601117 1.78e-02 7_[+1(3.80e-05)]_105 chr2R:7013099-7013219 5.31e-01 120 chrX:3024972-3025092 9.95e-01 120 chr3L:1388244-1388364 3.55e-01 120 chrX:14750559-14750679 5.81e-01 120 chr3R:4873902-4874022 9.79e-01 120 chr3L:548462-548582 3.68e-03 65_[+3(1.28e-05)]_47 chrX:20509693-20509813 9.81e-01 120 chr2L:9785939-9786059 5.81e-02 120 chr3R:9349570-9349690 9.61e-01 120 chrX:15500628-15500748 6.74e-02 120 chr2L:8697933-8698053 8.11e-03 26_[+1(1.83e-05)]_86 chr3R:31878407-31878527 4.73e-01 120 chr3R:17053529-17053649 5.76e-03 98_[+4(7.07e-06)]_14 chr3L:9897539-9897659 5.31e-01 120 chr2R:24981145-24981265 6.51e-04 52_[+5(4.65e-06)]_60 chr3L:4619994-4620114 7.56e-01 120 chr3R:10579688-10579808 1.46e-01 120 chr2L:12113100-12113220 9.83e-01 120 chr3L:17577684-17577804 9.06e-02 120 chr3L:17913336-17913456 7.79e-05 26_[+1(3.46e-05)]_16_[+3(3.84e-05)]_\ 62 chr3L:18038269-18038389 1.00e+00 120 chr2L:423319-423439 8.64e-02 97_[+4(7.07e-06)]_15 chr3R:30280434-30280554 5.99e-02 12_[+1(1.83e-05)]_100 chr2L:12719909-12720029 2.38e-01 120 chr2R:14782982-14783102 9.30e-01 120 chr2L:10144611-10144731 4.76e-03 26_[+5(4.65e-06)]_86 chr2R:24836778-24836898 9.55e-01 120 chr2R:8659686-8659806 3.53e-01 120 chr3L:2386605-2386725 8.23e-01 120 chrX:2452928-2453048 6.05e-01 120 chr3R:10476086-10476206 7.65e-01 120 chrX:17814929-17815049 1.00e+00 120 chrX:13541299-13541419 1.27e-03 8_[+3(2.19e-05)]_104 chr3L:1321323-1321443 5.54e-04 51_[+5(1.80e-06)]_61 chr3L:761852-761972 9.34e-01 120 chr2R:23712055-23712175 6.40e-03 65_[+3(1.58e-05)]_47 chr3L:13107466-13107586 1.99e-01 120 chr3R:30811350-30811470 9.09e-01 120 chr3L:3247019-3247139 1.98e-01 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1.02e-03 12_[+3(1.88e-05)]_100 chr2R:24548143-24548263 6.94e-01 120 chr2R:17836017-17836137 8.54e-01 120 chrX:5923275-5923395 9.97e-01 120 chr3R:22175849-22175969 9.98e-01 120 chr3R:26588205-26588325 4.47e-01 120 chr3L:3626252-3626372 2.53e-04 13_[+1(2.67e-05)]_91_[+2(4.53e-06)] chr3R:13841097-13841217 9.06e-01 120 chr3R:4810085-4810205 7.93e-04 3_[+5(1.39e-05)]_109 chr3L:9381740-9381860 5.26e-05 72_[+2(7.38e-06)]_1_[+5(2.13e-05)]_\ 31 chr2L:3787117-3787237 8.50e-01 120 chr3R:4403840-4403960 2.98e-01 120 chrX:17551012-17551132 3.01e-01 120 chr2L:3647637-3647757 9.71e-01 120 chr3R:23374436-23374556 2.67e-03 120 chr3L:13021907-13022027 1.37e-01 103_[+4(3.29e-05)]_9 chr2L:7790587-7790707 9.41e-03 60_[+2(3.81e-05)]_52 chr3L:14055311-14055431 9.83e-01 120 chr3L:777413-777533 1.00e+00 120 chrX:5897185-5897305 9.97e-01 120 chr2R:24629564-24629684 1.20e-01 120 chr2L:1911458-1911578 9.95e-01 120 chr2R:21569764-21569884 9.94e-01 120 chrX:17856893-17857013 1.30e-01 120 chr2L:7320093-7320213 8.63e-01 120 chr3R:19283672-19283792 9.03e-01 120 chr3L:14083386-14083506 8.66e-01 120 chr2L:5493084-5493204 9.77e-01 120 chr3L:12410932-12411052 1.00e+00 120 chr3R:15634282-15634402 7.56e-01 120 chr3R:15899753-15899873 9.89e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************