******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/bigmax.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:9894332-9894452 1.0000 120 chr2L:7826636-7826756 1.0000 120 chr3R:30395008-30395128 1.0000 120 chr2R:8155111-8155231 1.0000 120 chr3R:23780870-23780990 1.0000 120 chrX:2789408-2789528 1.0000 120 chr3R:27958099-27958219 1.0000 120 chrX:8180011-8180131 1.0000 120 chr2L:10057739-10057859 1.0000 120 chrX:19480867-19480987 1.0000 120 chr2R:24175387-24175507 1.0000 120 chrX:18108807-18108927 1.0000 120 chr2R:17547033-17547153 1.0000 120 chr2L:12975390-12975510 1.0000 120 chr3R:10482508-10482628 1.0000 120 chr3R:5646915-5647035 1.0000 120 chrX:21337815-21337935 1.0000 120 chr2L:295609-295729 1.0000 120 chr3R:25249871-25249991 1.0000 120 chr2R:24903285-24903405 1.0000 120 chr3L:15089994-15090114 1.0000 120 chrX:6268291-6268411 1.0000 120 chr2L:5803835-5803955 1.0000 120 chr3R:18226890-18227010 1.0000 120 chr2R:6756600-6756720 1.0000 120 chrX:12626016-12626136 1.0000 120 chr3L:21176691-21176811 1.0000 120 chr2L:10004149-10004269 1.0000 120 chr3L:770426-770546 1.0000 120 chrX:16289138-16289258 1.0000 120 chr3R:7977124-7977244 1.0000 120 chr3R:9748403-9748523 1.0000 120 chr2L:11005109-11005229 1.0000 120 chr3L:12276397-12276517 1.0000 120 chr2R:15528818-15528938 1.0000 120 chrX:492750-492870 1.0000 120 chr3L:12815868-12815988 1.0000 120 chr3R:19028004-19028124 1.0000 120 chr2R:15250204-15250324 1.0000 120 chr3L:14037781-14037901 1.0000 120 chr3L:11374335-11374455 1.0000 120 chr2R:10807991-10808111 1.0000 120 chr2R:7565013-7565133 1.0000 120 chrX:19736091-19736211 1.0000 120 chr2R:12175257-12175377 1.0000 120 chrX:16462360-16462480 1.0000 120 chrX:11497990-11498110 1.0000 120 chr3R:7094523-7094643 1.0000 120 chr2L:1158790-1158910 1.0000 120 chr2R:14244018-14244138 1.0000 120 chr2L:8364149-8364269 1.0000 120 chr3R:10138981-10139101 1.0000 120 chr2R:19395293-19395413 1.0000 120 chr4:193534-193654 1.0000 120 chr2L:19754937-19755057 1.0000 120 chr3L:263639-263759 1.0000 120 chr3L:5157939-5158059 1.0000 120 chr2R:6085236-6085356 1.0000 120 chrX:4198926-4199046 1.0000 120 chr2R:16197500-16197620 1.0000 120 chr2L:21758286-21758406 1.0000 120 chr2L:12435592-12435712 1.0000 120 chr3L:12145849-12145969 1.0000 120 chr3R:26867311-26867431 1.0000 120 chr2R:5259576-5259696 1.0000 120 chr3L:7157854-7157974 1.0000 120 chr2L:21168980-21169100 1.0000 120 chr3R:28328458-28328578 1.0000 120 chr3R:30283172-30283292 1.0000 120 chr2R:24664642-24664762 1.0000 120 chr3L:15520099-15520219 1.0000 120 chr2L:346303-346423 1.0000 120 chr2L:20735595-20735715 1.0000 120 chrX:10865610-10865730 1.0000 120 chr3R:20850921-20851041 1.0000 120 chr3R:16436478-16436598 1.0000 120 chr3R:9235854-9235974 1.0000 120 chr2L:2873867-2873987 1.0000 120 chrX:10003967-10004087 1.0000 120 chr3L:3908911-3909031 1.0000 120 chrX:10742966-10743086 1.0000 120 chr2R:18406071-18406191 1.0000 120 chrX:19520960-19521080 1.0000 120 chrX:12682663-12682783 1.0000 120 chr3R:9678230-9678350 1.0000 120 chr2L:19735467-19735587 1.0000 120 chrX:15746929-15747049 1.0000 120 chr2R:22531512-22531632 1.0000 120 chr2R:20585586-20585706 1.0000 120 chr2R:18819690-18819810 1.0000 120 chr3R:9783641-9783761 1.0000 120 chr3R:15262809-15262929 1.0000 120 chr2R:11360762-11360882 1.0000 120 chr3R:28585951-28586071 1.0000 120 chr2L:6558097-6558217 1.0000 120 chr2L:2959558-2959678 1.0000 120 chr2L:292490-292610 1.0000 120 chr3R:24108345-24108465 1.0000 120 chrX:254855-254975 1.0000 120 chr3L:11113062-11113182 1.0000 120 chr3R:4350730-4350850 1.0000 120 chr3R:22491085-22491205 1.0000 120 chr4:866576-866696 1.0000 120 chr3L:263839-263959 1.0000 120 chr2R:22515558-22515678 1.0000 120 chr4:423883-424003 1.0000 120 chrX:1670012-1670132 1.0000 120 chr2L:3466470-3466590 1.0000 120 chrX:3299134-3299254 1.0000 120 chr2L:10314926-10315046 1.0000 120 chr3R:6672734-6672854 1.0000 120 chr2R:22799598-22799718 1.0000 120 chr2L:8111014-8111134 1.0000 120 chrX:10213122-10213242 1.0000 120 chr3R:23693937-23694057 1.0000 120 chr3R:15836890-15837010 1.0000 120 chr2L:7293097-7293217 1.0000 120 chrX:6266081-6266201 1.0000 120 chr2L:6920701-6920821 1.0000 120 chr2L:7064328-7064448 1.0000 120 chrX:11155910-11156030 1.0000 120 chr3R:15681049-15681169 1.0000 120 chr2R:22645774-22645894 1.0000 120 chrX:5422280-5422400 1.0000 120 chr3L:8975237-8975357 1.0000 120 chrX:1964519-1964639 1.0000 120 chrX:13753502-13753622 1.0000 120 chrX:11147883-11148003 1.0000 120 chr3L:10812128-10812248 1.0000 120 chr3L:16574988-16575108 1.0000 120 chrX:15584191-15584311 1.0000 120 chr3R:9865973-9866093 1.0000 120 chrX:8194795-8194915 1.0000 120 chr2R:14164417-14164537 1.0000 120 chr3L:7382081-7382201 1.0000 120 chrX:17247034-17247154 1.0000 120 chr3R:14739676-14739796 1.0000 120 chr3L:1330296-1330416 1.0000 120 chr3L:19663484-19663604 1.0000 120 chr3R:20594032-20594152 1.0000 120 chrX:7707486-7707606 1.0000 120 chrX:6089851-6089971 1.0000 120 chr3R:30416926-30417046 1.0000 120 chr3R:27947043-27947163 1.0000 120 chr3R:22488745-22488865 1.0000 120 chr2L:18454266-18454386 1.0000 120 chr3L:4253679-4253799 1.0000 120 chr2L:7007664-7007784 1.0000 120 chr2L:18642394-18642514 1.0000 120 chr2R:8953009-8953129 1.0000 120 chr2R:18142274-18142394 1.0000 120 chr2L:4967550-4967670 1.0000 120 chrX:15498144-15498264 1.0000 120 chr3R:9702036-9702156 1.0000 120 chrX:16424373-16424493 1.0000 120 chr3L:8178104-8178224 1.0000 120 chr3R:24163274-24163394 1.0000 120 chr2R:19446523-19446643 1.0000 120 chrX:8780850-8780970 1.0000 120 chrX:9089885-9090005 1.0000 120 chr2R:16593884-16594004 1.0000 120 chr2R:13199029-13199149 1.0000 120 chrX:19294225-19294345 1.0000 120 chr2R:8148771-8148891 1.0000 120 chr2L:2152030-2152150 1.0000 120 chr2R:12321197-12321317 1.0000 120 chrX:15991757-15991877 1.0000 120 chr2L:8907488-8907608 1.0000 120 chr2L:19958913-19959033 1.0000 120 chr2L:1885377-1885497 1.0000 120 chr3R:13978273-13978393 1.0000 120 chr2L:5982905-5983025 1.0000 120 chr3R:21198516-21198636 1.0000 120 chr2R:10049815-10049935 1.0000 120 chr3L:11109592-11109712 1.0000 120 chr2R:20670150-20670270 1.0000 120 chrX:5420380-5420500 1.0000 120 chr2R:24941396-24941516 1.0000 120 chr2L:21089416-21089536 1.0000 120 chr3R:23680427-23680547 1.0000 120 chrX:17143404-17143524 1.0000 120 chr3R:14890478-14890598 1.0000 120 chr3R:13648088-13648208 1.0000 120 chr3L:11511402-11511522 1.0000 120 chrX:9090084-9090204 1.0000 120 chrX:13210625-13210745 1.0000 120 chr3L:7238545-7238665 1.0000 120 chrX:12750061-12750181 1.0000 120 chr3R:14575571-14575691 1.0000 120 chr2R:23811951-23812071 1.0000 120 chrX:6990108-6990228 1.0000 120 chrX:15301397-15301517 1.0000 120 chr2L:4968945-4969065 1.0000 120 chr2L:1613894-1614014 1.0000 120 chr3R:13647888-13648008 1.0000 120 chr2L:4886292-4886412 1.0000 120 chr2R:14360184-14360304 1.0000 120 chrX:8265390-8265510 1.0000 120 chr3L:5367859-5367979 1.0000 120 chr3L:16773404-16773524 1.0000 120 chr2R:24783429-24783549 1.0000 120 chr2R:8906926-8907046 1.0000 120 chr2L:7424656-7424776 1.0000 120 chr3L:5360749-5360869 1.0000 120 chr3L:20453494-20453614 1.0000 120 chr2R:12592162-12592282 1.0000 120 chr3R:29935865-29935985 1.0000 120 chrX:9158395-9158515 1.0000 120 chr3R:8799978-8800098 1.0000 120 chr2L:6792207-6792327 1.0000 120 chr3R:16180598-16180718 1.0000 120 chr3L:21256849-21256969 1.0000 120 chr3R:17566747-17566867 1.0000 120 chr2R:19450717-19450837 1.0000 120 chr2R:16320696-16320816 1.0000 120 chr2L:19123748-19123868 1.0000 120 chr3R:16455964-16456084 1.0000 120 chr2L:13004600-13004720 1.0000 120 chrX:16638261-16638381 1.0000 120 chr2L:14113243-14113363 1.0000 120 chr3R:24234411-24234531 1.0000 120 chr3L:12814943-12815063 1.0000 120 chr2L:21681659-21681779 1.0000 120 chr3R:21631980-21632100 1.0000 120 chr3L:8787782-8787902 1.0000 120 chr3R:25050664-25050784 1.0000 120 chr3R:27988030-27988150 1.0000 120 chr3R:16647743-16647863 1.0000 120 chr2R:23808949-23809069 1.0000 120 chrX:2419698-2419818 1.0000 120 chrX:1482924-1483044 1.0000 120 chr2L:10004349-10004469 1.0000 120 chr2R:7917376-7917496 1.0000 120 chr2R:14216223-14216343 1.0000 120 chrX:9599372-9599492 1.0000 120 chr3L:1628594-1628714 1.0000 120 chr2R:24941601-24941721 1.0000 120 chr3R:26253932-26254052 1.0000 120 chr3R:23933749-23933869 1.0000 120 chr2L:2753940-2754060 1.0000 120 chr3L:11293442-11293562 1.0000 120 chr2R:9863637-9863757 1.0000 120 chr2L:7424856-7424976 1.0000 120 chr3R:14890686-14890806 1.0000 120 chr2R:17665896-17666016 1.0000 120 chrX:656684-656804 1.0000 120 chr3R:19095392-19095512 1.0000 120 chr3L:833036-833156 1.0000 120 chr2L:6966441-6966561 1.0000 120 chr3L:16610363-16610483 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_bigmax/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/bigmax.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.278 C 0.227 G 0.221 T 0.275 Background letter frequencies (from file dataset with add-one prior applied): A 0.278 C 0.227 G 0.221 T 0.275 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TAACCTCA MEME-1 width = 8 sites = 94 llr = 864 E-value = 6.3e-092 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAACCTCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :aa:::28 pos.-specific C :::aa171 probability G :::::::1 matrix T a::::9:: bits 2.2 ** 2.0 * ** 1.7 ***** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ******** (13.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAACCTCA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCTCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17665896-17666016 80 1.90e-05 CGCTCAAACA TAACCTCA ACAAAGCAAA chr3L:11293442-11293562 36 1.90e-05 AAAATGTTCC TAACCTCA AAAGGCTATC chr3R:26253932-26254052 22 1.90e-05 ATGCTACATG TAACCTCA ATGATAAAGA chrX:9599372-9599492 40 1.90e-05 TCAGCGGACA TAACCTCA AAGGGCAAGC chrX:1482924-1483044 25 1.90e-05 TTAGTGGACA TAACCTCA AAGAAGGGGC chr3R:16647743-16647863 66 1.90e-05 TCGGCGGTTC TAACCTCA CTCATTCTCT chr2L:14113243-14113363 46 1.90e-05 gacccCAAAC TAACCTCA AAAACTGGGG chrX:16638261-16638381 77 1.90e-05 TTCCACCACA TAACCTCA CAATCCATTT chr3L:21256849-21256969 52 1.90e-05 ACAATAATTA TAACCTCA ATTCCCCCGC chr2L:6792207-6792327 65 1.90e-05 TTGGCCGACA TAACCTCA ATCGGAATGG chr3L:5360749-5360869 57 1.90e-05 CGATCGGACC TAACCTCA AAACGCGTTT chr2R:8906926-8907046 45 1.90e-05 GCTATAGTTA TAACCTCA AAGTGGCCGC chr3R:13648088-13648208 23 1.90e-05 GACCCGAACA TAACCTCA ATTTAATTCA chrX:17143404-17143524 67 1.90e-05 TACTCACGCT TAACCTCA CATATTTCTG chr2R:16593884-16594004 49 1.90e-05 TCCGTCTTTC TAACCTCA CAAAAGGCGC chrX:8780850-8780970 47 1.90e-05 TTTGTATACA TAACCTCA ATTCACATTT chr3L:1330296-1330416 55 1.90e-05 GTTGAGGACC TAACCTCA TCGCAAACGG chr2R:14164417-14164537 7 1.90e-05 AAGACA TAACCTCA ATTCGGGCAA chrX:8194795-8194915 102 1.90e-05 caaagaaaac taacctca aaacgaaaca chrX:11147883-11148003 81 1.90e-05 GATTCATGTT TAACCTCA CAAAATGCGA chrX:5422280-5422400 69 1.90e-05 GCGACGAACT TAACCTCA AATCCTGGGT chr2L:7293097-7293217 48 1.90e-05 CTCGTATACG TAACCTCA ATTTGTCGCC chr3R:15836890-15837010 19 1.90e-05 TAAGCTTACA TAACCTCA CTCGCCGCGA chr3R:23693937-23694057 63 1.90e-05 GAGACTTACA TAACCTCA ATGGAGTTTA chr2L:3466470-3466590 71 1.90e-05 CATAATGACA TAACCTCA ACTCGCAGTC chr2R:22515558-22515678 46 1.90e-05 AGGAATTACC TAACCTCA AAAAACAAAG chr3R:4350730-4350850 4 1.90e-05 ACT TAACCTCA AATCCGATAA chr2L:2959558-2959678 55 1.90e-05 AAGCTACACT TAACCTCA AACACATAAC chr2R:20585586-20585706 60 1.90e-05 ACACATCACA TAACCTCA CTTTAAAGAG chrX:10003967-10004087 47 1.90e-05 TGTCTCCACC TAACCTCA CATTCACCCT chr2L:20735595-20735715 87 1.90e-05 GCCTGCGACA TAACCTCA CTAACTCTAG chr2L:12435592-12435712 62 1.90e-05 CCCTAGTACA TAACCTCA ATCTGCGTCA chrX:4198926-4199046 31 1.90e-05 ATCAATGACC TAACCTCA CTTTCCTTAT chr2R:6085236-6085356 37 1.90e-05 CGCTTGTGCT TAACCTCA CTTATGTGCC chr3L:5157939-5158059 43 1.90e-05 AAATTAAACC TAACCTCA AACTGTGCGA chr3R:10138981-10139101 26 1.90e-05 AAAATGTTGT TAACCTCA AAAACCGCCA chr2L:8364149-8364269 4 1.90e-05 ACA TAACCTCA AACAACAACA chr2R:14244018-14244138 90 1.90e-05 GGGCCCAACA TAACCTCA ACCCTCTTAC chrX:11497990-11498110 50 1.90e-05 GGGCCTAACA TAACCTCA TTGAGTGTGA chrX:16462360-16462480 41 1.90e-05 AGTGAGAACA TAACCTCA AAGGGAGGAC chr2R:7565013-7565133 31 1.90e-05 GATATAACCC TAACCTCA ACCTACCTCG chrX:492750-492870 44 1.90e-05 CTCGCAATCC TAACCTCA ACGGCCGGAC chr2R:15528818-15528938 44 1.90e-05 CGAGTTCGTA TAACCTCA AACGGTTTTC chr2L:10004149-10004269 89 1.90e-05 AGCAAACACC TAACCTCA ATTGCGCACC chr2L:5803835-5803955 29 1.90e-05 CGACTTTTCA TAACCTCA ATTTTGGACC chr2L:295609-295729 65 1.90e-05 TCACCCGACC TAACCTCA CTAACCTCGG chr3R:5646915-5647035 44 1.90e-05 CTTGGCAACA TAACCTCA CTTTGTTGAC chrX:18108807-18108927 33 1.90e-05 ATAGCGGACT TAACCTCA CTATGTGTGT chr2R:24175387-24175507 48 1.90e-05 CATACAAACC TAACCTCA TTGTGTGCCG chrX:19480867-19480987 72 1.90e-05 GCTGGTCTCA TAACCTCA AAATTCGCGC chr2L:10057739-10057859 61 1.90e-05 CGTTCGGAAC TAACCTCA CTTTTTGCCC chr2R:8155111-8155231 36 1.90e-05 TGGAAAGTCC TAACCTCA ACATAATAGC chr3R:30395008-30395128 38 1.90e-05 TGCCCCAGGC TAACCTCA CTTTTGGGCT chr2L:7826636-7826756 33 1.90e-05 AAGGCGGGCC TAACCTCA CTCCTAACCT chr2L:9894332-9894452 46 1.90e-05 GACCCATACA TAACCTCA AACCAGAATG chr2L:8907488-8907608 37 4.23e-05 CGGCTCGACC TAACCTAA CCTTTCCCAA chr2R:8953009-8953129 69 4.23e-05 GGTGCGAAAC TAACCTAA AATCTCCCCC chrX:15584191-15584311 59 4.23e-05 TTTTCGGAGT TAACCTAA AAACTCACAT chr3L:8975237-8975357 40 4.23e-05 CCCAACCATT TAACCTAA AATTTAATGC chr2L:8111014-8111134 11 4.23e-05 ATATTGTACA TAACCTAA AAAGTTGACA chr4:866576-866696 23 4.23e-05 CACAGAAACC TAACCTAA AATATCAAAC chr3R:24108345-24108465 13 4.23e-05 ACCCAGAACA TAACCTAA CAATTTTCCA chr3R:20850921-20851041 57 4.23e-05 ACAAATAACA TAACCTAA TTGTGTGTTC chrX:10865610-10865730 43 4.23e-05 CATTTAAAAC TAACCTAA AAATGTCAAT chr2L:21168980-21169100 51 4.23e-05 CAGCGTTTTC TAACCTAA AATCATAAAA chr2R:16197500-16197620 79 4.23e-05 AGACCATACA TAACCTAA AGAAGAGCAC chr3R:27958099-27958219 45 4.23e-05 CTGAATAACA TAACCTAA AAACTACAGC chr2L:13004600-13004720 79 5.78e-05 ACTGAAAAGA TAACCTCC AAAGTCCGTA chrX:8265390-8265510 20 5.78e-05 AAATTCAAAC TAACCTCC GGTTAACGGT chr3R:23780870-23780990 11 5.78e-05 TGATCGTGTC TAACCTCC AAAAGCCGTG chr2R:19395293-19395413 68 7.29e-05 CAGCATAACA TAACCTCG CTGGTGCACA chr3L:21176691-21176811 63 7.29e-05 AGGTTAATTT TAACCTCG AAACCCAGCA chrX:19294225-19294345 108 8.86e-05 TCAGGCGATC TAACCCCA ATATT chr3L:4253679-4253799 66 8.86e-05 TTGACCATCC TAACCCCA CTTTTCTGCA chrX:6089851-6089971 20 8.86e-05 CTCTAGCACA TAACCCCA AACACTTTTC chrX:21337815-21337935 71 8.86e-05 ATTTCGGTTT TAACCCCA CTTTTTGGCA chr3R:9702036-9702156 42 1.12e-04 ACAACGACCC TAACCTTA AACGAAGAAA chr3R:7094523-7094643 49 1.12e-04 TCCTTAACCT TAACCTTA AAAAATCACG chr3R:9748403-9748523 99 1.12e-04 ACCTTCAACA TAACCTTA AAACAATGGC chr2R:22645774-22645894 44 1.31e-04 AGCCCCGCTA TAACCTAC AAAGTGCCGC chrX:10213122-10213242 63 1.31e-04 AGCCGCCGCC TAACCTAC AAAGTTACAT chr2R:18406071-18406191 50 1.31e-04 GCTCTAAACC TAACCTAC GAATATGTAA chr2L:346303-346423 36 1.31e-04 GCGTCGCACA TAACCTAC AACACCAAAA chr2L:12975390-12975510 13 1.31e-04 TATTAGCTGC TAACCTAC AACTTTATAA chr2L:1885377-1885497 58 1.49e-04 TTCTGCGACC TAACCTAG ACCAGAAAGA chr3L:16574988-16575108 62 1.49e-04 CACTGTCGTC TAACCTAG AATCGTCTCC chr3R:9783641-9783761 74 1.49e-04 AAAGCGAATC TAACCTAG AATGCCGCAG chr3L:12276397-12276517 43 1.49e-04 AACGACAAGT TAACCTAG CAAAGCCCAG chr2R:20670150-20670270 47 1.68e-04 TCAGGGGGTA TTACCTCA TCCATTAGAC chr2L:10314926-10315046 33 1.68e-04 CAGGGGCGGC TTACCTCA CTGCCTTCTG chr2R:16320696-16320816 58 1.87e-04 AGACCCAACC TAACCCAA CCAATTTAAT chr2R:12321197-12321317 54 2.06e-04 CTGCTTCACA TAACCTGA CAACTCTGAG chr3R:21198516-21198636 45 2.24e-04 TTCAATCACC TAACCTCT AAAATACTCC chrX:15498144-15498264 107 2.50e-04 TTTTATCCAT TAACCCCG TCGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCTCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17665896-17666016 1.9e-05 79_[+1]_33 chr3L:11293442-11293562 1.9e-05 35_[+1]_77 chr3R:26253932-26254052 1.9e-05 21_[+1]_91 chrX:9599372-9599492 1.9e-05 39_[+1]_73 chrX:1482924-1483044 1.9e-05 24_[+1]_88 chr3R:16647743-16647863 1.9e-05 65_[+1]_47 chr2L:14113243-14113363 1.9e-05 45_[+1]_67 chrX:16638261-16638381 1.9e-05 76_[+1]_36 chr3L:21256849-21256969 1.9e-05 51_[+1]_61 chr2L:6792207-6792327 1.9e-05 64_[+1]_48 chr3L:5360749-5360869 1.9e-05 56_[+1]_56 chr2R:8906926-8907046 1.9e-05 44_[+1]_68 chr3R:13648088-13648208 1.9e-05 22_[+1]_90 chrX:17143404-17143524 1.9e-05 66_[+1]_46 chr2R:16593884-16594004 1.9e-05 48_[+1]_64 chrX:8780850-8780970 1.9e-05 46_[+1]_66 chr3L:1330296-1330416 1.9e-05 54_[+1]_58 chr2R:14164417-14164537 1.9e-05 6_[+1]_106 chrX:8194795-8194915 1.9e-05 101_[+1]_11 chrX:11147883-11148003 1.9e-05 80_[+1]_32 chrX:5422280-5422400 1.9e-05 68_[+1]_44 chr2L:7293097-7293217 1.9e-05 47_[+1]_65 chr3R:15836890-15837010 1.9e-05 18_[+1]_94 chr3R:23693937-23694057 1.9e-05 62_[+1]_50 chr2L:3466470-3466590 1.9e-05 70_[+1]_42 chr2R:22515558-22515678 1.9e-05 45_[+1]_67 chr3R:4350730-4350850 1.9e-05 3_[+1]_109 chr2L:2959558-2959678 1.9e-05 54_[+1]_58 chr2R:20585586-20585706 1.9e-05 59_[+1]_53 chrX:10003967-10004087 1.9e-05 46_[+1]_66 chr2L:20735595-20735715 1.9e-05 86_[+1]_26 chr2L:12435592-12435712 1.9e-05 61_[+1]_51 chrX:4198926-4199046 1.9e-05 30_[+1]_82 chr2R:6085236-6085356 1.9e-05 36_[+1]_76 chr3L:5157939-5158059 1.9e-05 42_[+1]_70 chr3R:10138981-10139101 1.9e-05 25_[+1]_87 chr2L:8364149-8364269 1.9e-05 3_[+1]_109 chr2R:14244018-14244138 1.9e-05 89_[+1]_23 chrX:11497990-11498110 1.9e-05 49_[+1]_63 chrX:16462360-16462480 1.9e-05 40_[+1]_72 chr2R:7565013-7565133 1.9e-05 30_[+1]_82 chrX:492750-492870 1.9e-05 43_[+1]_69 chr2R:15528818-15528938 1.9e-05 43_[+1]_69 chr2L:10004149-10004269 1.9e-05 88_[+1]_24 chr2L:5803835-5803955 1.9e-05 28_[+1]_84 chr2L:295609-295729 1.9e-05 64_[+1]_48 chr3R:5646915-5647035 1.9e-05 43_[+1]_69 chrX:18108807-18108927 1.9e-05 32_[+1]_80 chr2R:24175387-24175507 1.9e-05 47_[+1]_65 chrX:19480867-19480987 1.9e-05 71_[+1]_41 chr2L:10057739-10057859 1.9e-05 60_[+1]_52 chr2R:8155111-8155231 1.9e-05 35_[+1]_77 chr3R:30395008-30395128 1.9e-05 37_[+1]_75 chr2L:7826636-7826756 1.9e-05 32_[+1]_80 chr2L:9894332-9894452 1.9e-05 45_[+1]_67 chr2L:8907488-8907608 4.2e-05 36_[+1]_76 chr2R:8953009-8953129 4.2e-05 68_[+1]_44 chrX:15584191-15584311 4.2e-05 58_[+1]_54 chr3L:8975237-8975357 4.2e-05 39_[+1]_73 chr2L:8111014-8111134 4.2e-05 10_[+1]_102 chr4:866576-866696 4.2e-05 22_[+1]_90 chr3R:24108345-24108465 4.2e-05 12_[+1]_100 chr3R:20850921-20851041 4.2e-05 56_[+1]_56 chrX:10865610-10865730 4.2e-05 42_[+1]_70 chr2L:21168980-21169100 4.2e-05 50_[+1]_62 chr2R:16197500-16197620 4.2e-05 78_[+1]_34 chr3R:27958099-27958219 4.2e-05 44_[+1]_68 chr2L:13004600-13004720 5.8e-05 78_[+1]_34 chrX:8265390-8265510 5.8e-05 19_[+1]_93 chr3R:23780870-23780990 5.8e-05 10_[+1]_102 chr2R:19395293-19395413 7.3e-05 67_[+1]_45 chr3L:21176691-21176811 7.3e-05 62_[+1]_50 chrX:19294225-19294345 8.9e-05 107_[+1]_5 chr3L:4253679-4253799 8.9e-05 65_[+1]_47 chrX:6089851-6089971 8.9e-05 19_[+1]_93 chrX:21337815-21337935 8.9e-05 70_[+1]_42 chr3R:9702036-9702156 0.00011 41_[+1]_71 chr3R:7094523-7094643 0.00011 48_[+1]_64 chr3R:9748403-9748523 0.00011 98_[+1]_14 chr2R:22645774-22645894 0.00013 43_[+1]_69 chrX:10213122-10213242 0.00013 62_[+1]_50 chr2R:18406071-18406191 0.00013 49_[+1]_63 chr2L:346303-346423 0.00013 35_[+1]_77 chr2L:12975390-12975510 0.00013 12_[+1]_100 chr2L:1885377-1885497 0.00015 57_[+1]_55 chr3L:16574988-16575108 0.00015 61_[+1]_51 chr3R:9783641-9783761 0.00015 73_[+1]_39 chr3L:12276397-12276517 0.00015 42_[+1]_70 chr2R:20670150-20670270 0.00017 46_[+1]_66 chr2L:10314926-10315046 0.00017 32_[+1]_80 chr2R:16320696-16320816 0.00019 57_[+1]_55 chr2R:12321197-12321317 0.00021 53_[+1]_59 chr3R:21198516-21198636 0.00022 44_[+1]_68 chrX:15498144-15498264 0.00025 106_[+1]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCTCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAACCTCA width=8 seqs=94 chr2R:17665896-17666016 ( 80) TAACCTCA 1 chr3L:11293442-11293562 ( 36) TAACCTCA 1 chr3R:26253932-26254052 ( 22) TAACCTCA 1 chrX:9599372-9599492 ( 40) TAACCTCA 1 chrX:1482924-1483044 ( 25) TAACCTCA 1 chr3R:16647743-16647863 ( 66) TAACCTCA 1 chr2L:14113243-14113363 ( 46) TAACCTCA 1 chrX:16638261-16638381 ( 77) TAACCTCA 1 chr3L:21256849-21256969 ( 52) TAACCTCA 1 chr2L:6792207-6792327 ( 65) TAACCTCA 1 chr3L:5360749-5360869 ( 57) TAACCTCA 1 chr2R:8906926-8907046 ( 45) TAACCTCA 1 chr3R:13648088-13648208 ( 23) TAACCTCA 1 chrX:17143404-17143524 ( 67) TAACCTCA 1 chr2R:16593884-16594004 ( 49) TAACCTCA 1 chrX:8780850-8780970 ( 47) TAACCTCA 1 chr3L:1330296-1330416 ( 55) TAACCTCA 1 chr2R:14164417-14164537 ( 7) TAACCTCA 1 chrX:8194795-8194915 ( 102) TAACCTCA 1 chrX:11147883-11148003 ( 81) TAACCTCA 1 chrX:5422280-5422400 ( 69) TAACCTCA 1 chr2L:7293097-7293217 ( 48) TAACCTCA 1 chr3R:15836890-15837010 ( 19) TAACCTCA 1 chr3R:23693937-23694057 ( 63) TAACCTCA 1 chr2L:3466470-3466590 ( 71) TAACCTCA 1 chr2R:22515558-22515678 ( 46) TAACCTCA 1 chr3R:4350730-4350850 ( 4) TAACCTCA 1 chr2L:2959558-2959678 ( 55) TAACCTCA 1 chr2R:20585586-20585706 ( 60) TAACCTCA 1 chrX:10003967-10004087 ( 47) TAACCTCA 1 chr2L:20735595-20735715 ( 87) TAACCTCA 1 chr2L:12435592-12435712 ( 62) TAACCTCA 1 chrX:4198926-4199046 ( 31) TAACCTCA 1 chr2R:6085236-6085356 ( 37) TAACCTCA 1 chr3L:5157939-5158059 ( 43) TAACCTCA 1 chr3R:10138981-10139101 ( 26) TAACCTCA 1 chr2L:8364149-8364269 ( 4) TAACCTCA 1 chr2R:14244018-14244138 ( 90) TAACCTCA 1 chrX:11497990-11498110 ( 50) TAACCTCA 1 chrX:16462360-16462480 ( 41) TAACCTCA 1 chr2R:7565013-7565133 ( 31) TAACCTCA 1 chrX:492750-492870 ( 44) TAACCTCA 1 chr2R:15528818-15528938 ( 44) TAACCTCA 1 chr2L:10004149-10004269 ( 89) TAACCTCA 1 chr2L:5803835-5803955 ( 29) TAACCTCA 1 chr2L:295609-295729 ( 65) TAACCTCA 1 chr3R:5646915-5647035 ( 44) TAACCTCA 1 chrX:18108807-18108927 ( 33) TAACCTCA 1 chr2R:24175387-24175507 ( 48) TAACCTCA 1 chrX:19480867-19480987 ( 72) TAACCTCA 1 chr2L:10057739-10057859 ( 61) TAACCTCA 1 chr2R:8155111-8155231 ( 36) TAACCTCA 1 chr3R:30395008-30395128 ( 38) TAACCTCA 1 chr2L:7826636-7826756 ( 33) TAACCTCA 1 chr2L:9894332-9894452 ( 46) TAACCTCA 1 chr2L:8907488-8907608 ( 37) TAACCTAA 1 chr2R:8953009-8953129 ( 69) TAACCTAA 1 chrX:15584191-15584311 ( 59) TAACCTAA 1 chr3L:8975237-8975357 ( 40) TAACCTAA 1 chr2L:8111014-8111134 ( 11) TAACCTAA 1 chr4:866576-866696 ( 23) TAACCTAA 1 chr3R:24108345-24108465 ( 13) TAACCTAA 1 chr3R:20850921-20851041 ( 57) TAACCTAA 1 chrX:10865610-10865730 ( 43) TAACCTAA 1 chr2L:21168980-21169100 ( 51) TAACCTAA 1 chr2R:16197500-16197620 ( 79) TAACCTAA 1 chr3R:27958099-27958219 ( 45) TAACCTAA 1 chr2L:13004600-13004720 ( 79) TAACCTCC 1 chrX:8265390-8265510 ( 20) TAACCTCC 1 chr3R:23780870-23780990 ( 11) TAACCTCC 1 chr2R:19395293-19395413 ( 68) TAACCTCG 1 chr3L:21176691-21176811 ( 63) TAACCTCG 1 chrX:19294225-19294345 ( 108) TAACCCCA 1 chr3L:4253679-4253799 ( 66) TAACCCCA 1 chrX:6089851-6089971 ( 20) TAACCCCA 1 chrX:21337815-21337935 ( 71) TAACCCCA 1 chr3R:9702036-9702156 ( 42) TAACCTTA 1 chr3R:7094523-7094643 ( 49) TAACCTTA 1 chr3R:9748403-9748523 ( 99) TAACCTTA 1 chr2R:22645774-22645894 ( 44) TAACCTAC 1 chrX:10213122-10213242 ( 63) TAACCTAC 1 chr2R:18406071-18406191 ( 50) TAACCTAC 1 chr2L:346303-346423 ( 36) TAACCTAC 1 chr2L:12975390-12975510 ( 13) TAACCTAC 1 chr2L:1885377-1885497 ( 58) TAACCTAG 1 chr3L:16574988-16575108 ( 62) TAACCTAG 1 chr3R:9783641-9783761 ( 74) TAACCTAG 1 chr3L:12276397-12276517 ( 43) TAACCTAG 1 chr2R:20670150-20670270 ( 47) TTACCTCA 1 chr2L:10314926-10315046 ( 33) TTACCTCA 1 chr2R:16320696-16320816 ( 58) TAACCCAA 1 chr2R:12321197-12321317 ( 54) TAACCTGA 1 chr3R:21198516-21198636 ( 45) TAACCTCT 1 chrX:15498144-15498264 ( 107) TAACCCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCTCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.6531 E= 6.3e-092 -1320 -1320 -1320 186 182 -1320 -1320 -369 185 -1320 -1320 -1320 -1320 214 -1320 -1320 -1320 214 -1320 -1320 -1320 -183 -1320 177 -25 167 -437 -310 158 -141 -157 -469 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCTCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 94 E= 6.3e-092 0.000000 0.000000 0.000000 1.000000 0.978723 0.000000 0.000000 0.021277 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.063830 0.000000 0.936170 0.234043 0.723404 0.010638 0.031915 0.829787 0.085106 0.074468 0.010638 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCTCA MEME-1 regular expression -------------------------------------------------------------------------------- TAACCT[CA]A -------------------------------------------------------------------------------- Time 7.36 secs. ******************************************************************************** ******************************************************************************** MOTIF TGAGGTTA MEME-2 width = 8 sites = 96 llr = 856 E-value = 1.1e-083 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGAGGTTA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :19::::a pos.-specific C 1::::::: probability G 17:aa::: matrix T 921::aa: bits 2.2 ** 2.0 *** 1.7 ***** 1.5 ***** Relative 1.3 * ***** Entropy 1.1 * ****** (12.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGAGGTTA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGGTTA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6966441-6966561 49 1.73e-05 TGTTCAAATT TGAGGTTA TGTTTTCCCA chr2L:21681659-21681779 25 1.73e-05 CAAAGGTCTT TGAGGTTA GATAAGAACT chr3R:17566747-17566867 67 1.73e-05 GCGACAAGTG TGAGGTTA AGTGTTGCAG chr2R:12592162-12592282 58 1.73e-05 TGGGGGAAAT TGAGGTTA GGTACGAACT chr2L:7424656-7424776 55 1.73e-05 AGTCGGTTTT TGAGGTTA GGAATGCCCC chr2R:14360184-14360304 30 1.73e-05 CGCTGCTGTG TGAGGTTA GGTGATCAAA chrX:12750061-12750181 59 1.73e-05 GGCTGAATTT TGAGGTTA ACTTTTTGAC chr3R:23680427-23680547 15 1.73e-05 TCGCCGAAAG TGAGGTTA GGTAGGTGTG chr3R:13978273-13978393 48 1.73e-05 TTCATCTTTT TGAGGTTA GGCGAACGCC chr2R:8148771-8148891 34 1.73e-05 GTTTGATATT TGAGGTTA GACACGTGCC chrX:15498144-15498264 59 1.73e-05 CACCGCCGAG TGAGGTTA TGTACGGCTG chr2L:7007664-7007784 33 1.73e-05 GTCTTGAAAT TGAGGTTA ACTGTTTGGG chr3R:27947043-27947163 81 1.73e-05 CGATTGATAG TGAGGTTA GGTCGTGTTA chr3R:30416926-30417046 25 1.73e-05 TGGCTCATTG TGAGGTTA TGTAACGATG chr3R:20594032-20594152 65 1.73e-05 AACGCCAAGT TGAGGTTA GCTAAAGCCG chrX:17247034-17247154 94 1.73e-05 TCTGAAAGTT TGAGGTTA ACTTTTAACT chrX:1964519-1964639 60 1.73e-05 TAGCATCGTT TGAGGTTA TGTTCGATGG chr3R:15681049-15681169 56 1.73e-05 TCATCATTTT TGAGGTTA TGCCTCGCCA chrX:6266081-6266201 43 1.73e-05 CGTTTCCACG TGAGGTTA TGTTTGTCGA chr2R:22799598-22799718 74 1.73e-05 CCGAAAAGTT TGAGGTTA GGTGCGGCTG chrX:3299134-3299254 95 1.73e-05 TTAAGAGGTT TGAGGTTA TGTTATGGGC chrX:1670012-1670132 74 1.73e-05 GTGCTGCTAG TGAGGTTA TACTACCCAT chr3R:28585951-28586071 71 1.73e-05 TTTTCCCTTT TGAGGTTA AGGTATGCCA chr3R:15262809-15262929 57 1.73e-05 CCGTCAATTT TGAGGTTA GAATGTCGCT chr2R:22531512-22531632 87 1.73e-05 CTAAGTGAGT TGAGGTTA TGTGCTGACA chrX:15746929-15747049 102 1.73e-05 ACTGCAAGTT TGAGGTTA GACTGGAACT chrX:19520960-19521080 41 1.73e-05 TTCGTCGCGT TGAGGTTA GAGTGCACAA chr3L:3908911-3909031 49 1.73e-05 TCCCGAACTT TGAGGTTA GATTTCGTGC chr3R:9235854-9235974 82 1.73e-05 CGCAAACATT TGAGGTTA CGTTTTCAGC chr3R:30283172-30283292 73 1.73e-05 ATACACTGTG TGAGGTTA GGTTTCACTT chr3R:28328458-28328578 39 1.73e-05 GCAATCAGTT TGAGGTTA TAGTGCAGGC chr3L:7157854-7157974 5 1.73e-05 TGTT TGAGGTTA CGTTCGGCAA chr2R:5259576-5259696 49 1.73e-05 TGGGAACATT TGAGGTTA AACTTGAGTC chr2R:12175257-12175377 86 1.73e-05 TGGCCGATTT TGAGGTTA AAACGGCGCC chr2R:10807991-10808111 59 1.73e-05 TGATGCAGAG TGAGGTTA GATCGAAAAA chr3L:11374335-11374455 57 1.73e-05 TTTATTTATG TGAGGTTA TGTTGGTGTG chr2R:15250204-15250324 88 1.73e-05 TTAGAGTAGT TGAGGTTA TGTATTTGCC chr3R:19028004-19028124 71 1.73e-05 CCATCGCGTT TGAGGTTA GGTGTTCAAA chr3L:12815868-12815988 54 1.73e-05 GCGCTCAAAA TGAGGTTA GGGACGAAGC chrX:12626016-12626136 65 1.73e-05 GCAGCTAAAT TGAGGTTA TGTTTGCAAG chr3R:18226890-18227010 73 1.73e-05 GGGCCGCGAG TGAGGTTA TGTGACCAGC chrX:6268291-6268411 88 1.73e-05 TTTACAACTT TGAGGTTA GGTCTTGTGT chr3R:25249871-25249991 106 1.73e-05 ATTAGATATT TGAGGTTA TGTGTAC chr3R:10482508-10482628 59 1.73e-05 CCCCGCTCTT TGAGGTTA TGTGTGCGGC chrX:8180011-8180131 59 1.73e-05 CGCAAGAAGT TGAGGTTA TGTCTGCGCC chrX:2789408-2789528 65 1.73e-05 ATGTTGCGTT TGAGGTTA GGAAATAAAC chr2R:23808949-23809069 36 3.89e-05 GCGCCTAATT TTAGGTTA GACGCCAGTC chr3L:8787782-8787902 57 3.89e-05 AGCTTTTAAG TTAGGTTA GGAAACTTTT chr2R:19450717-19450837 11 3.89e-05 TTCAGCCATT TTAGGTTA AAATGACGTC chr3L:16773404-16773524 62 3.89e-05 TGCTTGTCCT TTAGGTTA GGAATTTCTG chr2R:24941396-24941516 95 3.89e-05 ATAAGTAGGG TTAGGTTA GAGATCTGAT chr2R:18142274-18142394 62 3.89e-05 TTCATCTATT TTAGGTTA TATTCCATTA chr3R:14739676-14739796 41 3.89e-05 AAAAGTAGGG TTAGGTTA ATTTTATACG chr3R:9865973-9866093 56 3.89e-05 GGTTTTGTTT TTAGGTTA TGTACACACG chr2L:6920701-6920821 26 3.89e-05 ATCATATAAG TTAGGTTA TAATATCGTA chr3R:6672734-6672854 61 3.89e-05 ttcggttcgg ttaggtta ggttgagtgc chr2L:19735467-19735587 17 3.89e-05 TTGTGCTTTT TTAGGTTA TGTACATGTA chr2L:12435592-12435712 34 3.89e-05 CAGGTTCCGT TTAGGTTA TTATCGCTGG chrX:19736091-19736211 63 3.89e-05 TGCACGCTTT TTAGGTTA AGTCGAGACT chr3L:21176691-21176811 51 3.89e-05 AAACATTTGG TTAGGTTA ATTTTAACCT chr3L:1628594-1628714 111 6.08e-05 CCAGTGATTT TAAGGTTA TA chr2L:4886292-4886412 46 6.08e-05 ATACTATTTT TAAGGTTA GAGGATCCAA chr2R:10049815-10049935 86 6.08e-05 ACAACAAATG TAAGGTTA GTTTATTGGT chr2L:4967550-4967670 14 6.08e-05 AGGCCGCTTT TAAGGTTA TGTTTGGTCC chr3L:15520099-15520219 81 6.08e-05 TCGTTAACAT TAAGGTTA TGTTAAAACT chr3R:7977124-7977244 58 6.08e-05 GCTGGTTTTG TAAGGTTA AGTCGAAATC chrX:16289138-16289258 84 6.08e-05 CTTATGTTTT TAAGGTTA TGATTCCGGT chr2R:9863637-9863757 89 9.19e-05 ATTGATAATG GGAGGTTA TCAAATGCAC chr3R:21631980-21632100 47 9.19e-05 TATCGGTTTT GGAGGTTA TTAGAGGGCT chr3R:24163274-24163394 29 9.19e-05 TGTTTCGCTT TGTGGTTA TGCGGTATCG chrX:10742966-10743086 31 9.19e-05 CCATTATTTT GGAGGTTA TATCaataat chr3L:263639-263759 29 9.19e-05 TATACGCCAA GGAGGTTA GAAACGAACC chr2R:6756600-6756720 54 9.19e-05 AATCGCGAGT TGTGGTTA TGTAAATACT chr2R:24903285-24903405 53 9.19e-05 GATTCGCGAA TGTGGTTA TGTCGAAAGA chr2L:2753940-2754060 10 1.06e-04 GGTTCAAAT CGAGGTTA GGAGGGCCGC chr2L:10314926-10315046 101 1.06e-04 CAAGCGAATT CGAGGTTA TTTCCATGTC chr2L:6558097-6558217 77 1.06e-04 ATTGAAAGTG CGAGGTTA TGTAATAACT chr3R:8799978-8800098 76 1.20e-04 ATGCACTTCT TGGGGTTA TGGGGTGGCA chrX:9089885-9090005 81 1.20e-04 CGCCACTTTT TGGGGTTA GGTCGAGGCG chr3L:14037781-14037901 72 1.20e-04 TTTGCCTTTT TGGGGTTA TGTCGAATTT chr2R:24783429-24783549 47 1.34e-04 GGACTGATTT TGAGGTTG GAGCCATCAG chrX:15991757-15991877 25 1.34e-04 TTTAAACTTT TGAGGTTG TGTTCGTTTT chrX:254855-254975 63 1.34e-04 TTGTAATATT TGAGGTTG GTTTTTGTTG chrX:10213122-10213242 83 1.72e-04 AGTTACATAA TTTGGTTA TTTTGTTGTT chrX:12682663-12682783 19 1.72e-04 GCTCGGTTTT TTTGGTTA CGTTGGGTTT chr2L:19754937-19755057 11 1.72e-04 CCAATAATTT GTAGGTTA GTCTACGGGA chr3L:770426-770546 81 1.72e-04 CTTTATGTTT TTTGGTTA TGTTACGCAC chr3L:15089994-15090114 59 1.72e-04 GAATAATTTT GTAGGTTA GGTTGGAGAC chrX:5420380-5420500 39 1.90e-04 TTTTTTTGTA CTAGGTTA TGTTCCGCGT chr2L:2873867-2873987 82 1.90e-04 TTTTGATGCT CTAGGTTA GGAAATTAAA chr3R:16436478-16436598 69 2.04e-04 TTTAGTAAAT TGCGGTTA TGTCACGAAA chrX:1482924-1483044 10 2.89e-04 AGACAGGCA TATGGTTA GTGGACATAA chr3R:13648088-13648208 85 2.89e-04 CCAAATTGTA TGAGGTCA TTTACTCGCG chrX:16462360-16462480 94 2.89e-04 CTAATATGTT TATGGTTA AAATGTTTGC chr2R:17547033-17547153 57 2.89e-04 GTTGGTTTTT GAAGGTTA TGTTTTCGGC chr2L:10057739-10057859 102 2.89e-04 TGCGCCGCCA TGAGGTGA CCATCGAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGGTTA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6966441-6966561 1.7e-05 48_[+2]_64 chr2L:21681659-21681779 1.7e-05 24_[+2]_88 chr3R:17566747-17566867 1.7e-05 66_[+2]_46 chr2R:12592162-12592282 1.7e-05 57_[+2]_55 chr2L:7424656-7424776 1.7e-05 54_[+2]_58 chr2R:14360184-14360304 1.7e-05 29_[+2]_83 chrX:12750061-12750181 1.7e-05 58_[+2]_54 chr3R:23680427-23680547 1.7e-05 14_[+2]_98 chr3R:13978273-13978393 1.7e-05 47_[+2]_65 chr2R:8148771-8148891 1.7e-05 33_[+2]_79 chrX:15498144-15498264 1.7e-05 58_[+2]_54 chr2L:7007664-7007784 1.7e-05 32_[+2]_80 chr3R:27947043-27947163 1.7e-05 80_[+2]_32 chr3R:30416926-30417046 1.7e-05 24_[+2]_88 chr3R:20594032-20594152 1.7e-05 64_[+2]_48 chrX:17247034-17247154 1.7e-05 93_[+2]_19 chrX:1964519-1964639 1.7e-05 59_[+2]_53 chr3R:15681049-15681169 1.7e-05 55_[+2]_57 chrX:6266081-6266201 1.7e-05 42_[+2]_70 chr2R:22799598-22799718 1.7e-05 73_[+2]_39 chrX:3299134-3299254 1.7e-05 94_[+2]_18 chrX:1670012-1670132 1.7e-05 73_[+2]_39 chr3R:28585951-28586071 1.7e-05 70_[+2]_42 chr3R:15262809-15262929 1.7e-05 56_[+2]_56 chr2R:22531512-22531632 1.7e-05 86_[+2]_26 chrX:15746929-15747049 1.7e-05 101_[+2]_11 chrX:19520960-19521080 1.7e-05 40_[+2]_72 chr3L:3908911-3909031 1.7e-05 48_[+2]_64 chr3R:9235854-9235974 1.7e-05 81_[+2]_31 chr3R:30283172-30283292 1.7e-05 72_[+2]_40 chr3R:28328458-28328578 1.7e-05 38_[+2]_74 chr3L:7157854-7157974 1.7e-05 4_[+2]_108 chr2R:5259576-5259696 1.7e-05 48_[+2]_64 chr2R:12175257-12175377 1.7e-05 85_[+2]_27 chr2R:10807991-10808111 1.7e-05 58_[+2]_54 chr3L:11374335-11374455 1.7e-05 56_[+2]_56 chr2R:15250204-15250324 1.7e-05 87_[+2]_25 chr3R:19028004-19028124 1.7e-05 70_[+2]_42 chr3L:12815868-12815988 1.7e-05 53_[+2]_59 chrX:12626016-12626136 1.7e-05 64_[+2]_48 chr3R:18226890-18227010 1.7e-05 72_[+2]_40 chrX:6268291-6268411 1.7e-05 87_[+2]_25 chr3R:25249871-25249991 1.7e-05 105_[+2]_7 chr3R:10482508-10482628 1.7e-05 58_[+2]_54 chrX:8180011-8180131 1.7e-05 58_[+2]_54 chrX:2789408-2789528 1.7e-05 64_[+2]_48 chr2R:23808949-23809069 3.9e-05 35_[+2]_77 chr3L:8787782-8787902 3.9e-05 56_[+2]_56 chr2R:19450717-19450837 3.9e-05 10_[+2]_102 chr3L:16773404-16773524 3.9e-05 61_[+2]_51 chr2R:24941396-24941516 3.9e-05 94_[+2]_18 chr2R:18142274-18142394 3.9e-05 61_[+2]_51 chr3R:14739676-14739796 3.9e-05 40_[+2]_72 chr3R:9865973-9866093 3.9e-05 55_[+2]_57 chr2L:6920701-6920821 3.9e-05 25_[+2]_87 chr3R:6672734-6672854 3.9e-05 60_[+2]_52 chr2L:19735467-19735587 3.9e-05 16_[+2]_96 chr2L:12435592-12435712 3.9e-05 33_[+2]_79 chrX:19736091-19736211 3.9e-05 62_[+2]_50 chr3L:21176691-21176811 3.9e-05 50_[+2]_62 chr3L:1628594-1628714 6.1e-05 110_[+2]_2 chr2L:4886292-4886412 6.1e-05 45_[+2]_67 chr2R:10049815-10049935 6.1e-05 85_[+2]_27 chr2L:4967550-4967670 6.1e-05 13_[+2]_99 chr3L:15520099-15520219 6.1e-05 80_[+2]_32 chr3R:7977124-7977244 6.1e-05 57_[+2]_55 chrX:16289138-16289258 6.1e-05 83_[+2]_29 chr2R:9863637-9863757 9.2e-05 88_[+2]_24 chr3R:21631980-21632100 9.2e-05 46_[+2]_66 chr3R:24163274-24163394 9.2e-05 28_[+2]_84 chrX:10742966-10743086 9.2e-05 30_[+2]_82 chr3L:263639-263759 9.2e-05 28_[+2]_84 chr2R:6756600-6756720 9.2e-05 53_[+2]_59 chr2R:24903285-24903405 9.2e-05 52_[+2]_60 chr2L:2753940-2754060 0.00011 9_[+2]_103 chr2L:10314926-10315046 0.00011 100_[+2]_12 chr2L:6558097-6558217 0.00011 76_[+2]_36 chr3R:8799978-8800098 0.00012 75_[+2]_37 chrX:9089885-9090005 0.00012 80_[+2]_32 chr3L:14037781-14037901 0.00012 71_[+2]_41 chr2R:24783429-24783549 0.00013 46_[+2]_66 chrX:15991757-15991877 0.00013 24_[+2]_88 chrX:254855-254975 0.00013 62_[+2]_50 chrX:10213122-10213242 0.00017 82_[+2]_30 chrX:12682663-12682783 0.00017 18_[+2]_94 chr2L:19754937-19755057 0.00017 10_[+2]_102 chr3L:770426-770546 0.00017 80_[+2]_32 chr3L:15089994-15090114 0.00017 58_[+2]_54 chrX:5420380-5420500 0.00019 38_[+2]_74 chr2L:2873867-2873987 0.00019 81_[+2]_31 chr3R:16436478-16436598 0.0002 68_[+2]_44 chrX:1482924-1483044 0.00029 9_[+2]_103 chr3R:13648088-13648208 0.00029 84_[+2]_28 chrX:16462360-16462480 0.00029 93_[+2]_19 chr2R:17547033-17547153 0.00029 56_[+2]_56 chr2L:10057739-10057859 0.00029 101_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGGTTA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGAGGTTA width=8 seqs=96 chr2L:6966441-6966561 ( 49) TGAGGTTA 1 chr2L:21681659-21681779 ( 25) TGAGGTTA 1 chr3R:17566747-17566867 ( 67) TGAGGTTA 1 chr2R:12592162-12592282 ( 58) TGAGGTTA 1 chr2L:7424656-7424776 ( 55) TGAGGTTA 1 chr2R:14360184-14360304 ( 30) TGAGGTTA 1 chrX:12750061-12750181 ( 59) TGAGGTTA 1 chr3R:23680427-23680547 ( 15) TGAGGTTA 1 chr3R:13978273-13978393 ( 48) TGAGGTTA 1 chr2R:8148771-8148891 ( 34) TGAGGTTA 1 chrX:15498144-15498264 ( 59) TGAGGTTA 1 chr2L:7007664-7007784 ( 33) TGAGGTTA 1 chr3R:27947043-27947163 ( 81) TGAGGTTA 1 chr3R:30416926-30417046 ( 25) TGAGGTTA 1 chr3R:20594032-20594152 ( 65) TGAGGTTA 1 chrX:17247034-17247154 ( 94) TGAGGTTA 1 chrX:1964519-1964639 ( 60) TGAGGTTA 1 chr3R:15681049-15681169 ( 56) TGAGGTTA 1 chrX:6266081-6266201 ( 43) TGAGGTTA 1 chr2R:22799598-22799718 ( 74) TGAGGTTA 1 chrX:3299134-3299254 ( 95) TGAGGTTA 1 chrX:1670012-1670132 ( 74) TGAGGTTA 1 chr3R:28585951-28586071 ( 71) TGAGGTTA 1 chr3R:15262809-15262929 ( 57) TGAGGTTA 1 chr2R:22531512-22531632 ( 87) TGAGGTTA 1 chrX:15746929-15747049 ( 102) TGAGGTTA 1 chrX:19520960-19521080 ( 41) TGAGGTTA 1 chr3L:3908911-3909031 ( 49) TGAGGTTA 1 chr3R:9235854-9235974 ( 82) TGAGGTTA 1 chr3R:30283172-30283292 ( 73) TGAGGTTA 1 chr3R:28328458-28328578 ( 39) TGAGGTTA 1 chr3L:7157854-7157974 ( 5) TGAGGTTA 1 chr2R:5259576-5259696 ( 49) TGAGGTTA 1 chr2R:12175257-12175377 ( 86) TGAGGTTA 1 chr2R:10807991-10808111 ( 59) TGAGGTTA 1 chr3L:11374335-11374455 ( 57) TGAGGTTA 1 chr2R:15250204-15250324 ( 88) TGAGGTTA 1 chr3R:19028004-19028124 ( 71) TGAGGTTA 1 chr3L:12815868-12815988 ( 54) TGAGGTTA 1 chrX:12626016-12626136 ( 65) TGAGGTTA 1 chr3R:18226890-18227010 ( 73) TGAGGTTA 1 chrX:6268291-6268411 ( 88) TGAGGTTA 1 chr3R:25249871-25249991 ( 106) TGAGGTTA 1 chr3R:10482508-10482628 ( 59) TGAGGTTA 1 chrX:8180011-8180131 ( 59) TGAGGTTA 1 chrX:2789408-2789528 ( 65) TGAGGTTA 1 chr2R:23808949-23809069 ( 36) TTAGGTTA 1 chr3L:8787782-8787902 ( 57) TTAGGTTA 1 chr2R:19450717-19450837 ( 11) TTAGGTTA 1 chr3L:16773404-16773524 ( 62) TTAGGTTA 1 chr2R:24941396-24941516 ( 95) TTAGGTTA 1 chr2R:18142274-18142394 ( 62) TTAGGTTA 1 chr3R:14739676-14739796 ( 41) TTAGGTTA 1 chr3R:9865973-9866093 ( 56) TTAGGTTA 1 chr2L:6920701-6920821 ( 26) TTAGGTTA 1 chr3R:6672734-6672854 ( 61) TTAGGTTA 1 chr2L:19735467-19735587 ( 17) TTAGGTTA 1 chr2L:12435592-12435712 ( 34) TTAGGTTA 1 chrX:19736091-19736211 ( 63) TTAGGTTA 1 chr3L:21176691-21176811 ( 51) TTAGGTTA 1 chr3L:1628594-1628714 ( 111) TAAGGTTA 1 chr2L:4886292-4886412 ( 46) TAAGGTTA 1 chr2R:10049815-10049935 ( 86) TAAGGTTA 1 chr2L:4967550-4967670 ( 14) TAAGGTTA 1 chr3L:15520099-15520219 ( 81) TAAGGTTA 1 chr3R:7977124-7977244 ( 58) TAAGGTTA 1 chrX:16289138-16289258 ( 84) TAAGGTTA 1 chr2R:9863637-9863757 ( 89) GGAGGTTA 1 chr3R:21631980-21632100 ( 47) GGAGGTTA 1 chr3R:24163274-24163394 ( 29) TGTGGTTA 1 chrX:10742966-10743086 ( 31) GGAGGTTA 1 chr3L:263639-263759 ( 29) GGAGGTTA 1 chr2R:6756600-6756720 ( 54) TGTGGTTA 1 chr2R:24903285-24903405 ( 53) TGTGGTTA 1 chr2L:2753940-2754060 ( 10) CGAGGTTA 1 chr2L:10314926-10315046 ( 101) CGAGGTTA 1 chr2L:6558097-6558217 ( 77) CGAGGTTA 1 chr3R:8799978-8800098 ( 76) TGGGGTTA 1 chrX:9089885-9090005 ( 81) TGGGGTTA 1 chr3L:14037781-14037901 ( 72) TGGGGTTA 1 chr2R:24783429-24783549 ( 47) TGAGGTTG 1 chrX:15991757-15991877 ( 25) TGAGGTTG 1 chrX:254855-254975 ( 63) TGAGGTTG 1 chrX:10213122-10213242 ( 83) TTTGGTTA 1 chrX:12682663-12682783 ( 19) TTTGGTTA 1 chr2L:19754937-19755057 ( 11) GTAGGTTA 1 chr3L:770426-770546 ( 81) TTTGGTTA 1 chr3L:15089994-15090114 ( 59) GTAGGTTA 1 chrX:5420380-5420500 ( 39) CTAGGTTA 1 chr2L:2873867-2873987 ( 82) CTAGGTTA 1 chr3R:16436478-16436598 ( 69) TGCGGTTA 1 chrX:1482924-1483044 ( 10) TATGGTTA 1 chr3R:13648088-13648208 ( 85) TGAGGTCA 1 chrX:16462360-16462480 ( 94) TATGGTTA 1 chr2R:17547033-17547153 ( 57) GAAGGTTA 1 chr2L:10057739-10057859 ( 102) TGAGGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGGTTA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.64486 E= 1.1e-083 -1323 -212 -160 167 -141 -1323 162 -33 166 -444 -282 -172 -1323 -1323 218 -1323 -1323 -1323 218 -1323 -1323 -1323 -1323 186 -1323 -444 -440 183 180 -1323 -282 -1323 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGGTTA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 96 E= 1.1e-083 0.000000 0.052083 0.072917 0.875000 0.104167 0.000000 0.677083 0.218750 0.875000 0.010417 0.031250 0.083333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.010417 0.010417 0.979167 0.968750 0.000000 0.031250 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGGTTA MEME-2 regular expression -------------------------------------------------------------------------------- T[GT]AGGTTA -------------------------------------------------------------------------------- Time 13.35 secs. ******************************************************************************** ******************************************************************************** MOTIF RGGCGGGS MEME-3 width = 8 sites = 9 llr = 96 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGGCGGGS MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3::::::: pos.-specific C :::a:::4 probability G 7aa:aaa6 matrix T :::::::: bits 2.2 ****** 2.0 ****** 1.7 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ******** (15.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGCGGGG consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGCGGGS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:14113243-14113363 94 5.84e-06 GTCGGTCGAT GGGCGGGG AAGGGAGTTT chr3R:6672734-6672854 24 5.84e-06 ACAGACAGGC GGGCGGGG CTCCCGGTCG chr2R:19395293-19395413 47 5.84e-06 TGGATGAAGG GGGCGGGG CGGCAGCATA chr2L:1885377-1885497 94 1.18e-05 GAAGGCAAAC GGGCGGGC GGCGGATTTG chr3L:263639-263759 81 1.18e-05 GCAAGTGTGT GGGCGGGC GAAAAAAACT chr2L:11005109-11005229 51 1.18e-05 TAGCCAGCAT GGGCGGGC CACGATGAGC chr2L:2753940-2754060 39 1.92e-05 GTGCTTATAT AGGCGGGG AGTACAGTTA chrX:6990108-6990228 88 1.92e-05 TCATTCACCA AGGCGGGG GGTTTCAACA chr2L:7826636-7826756 24 2.68e-05 TACGCGGCAA AGGCGGGC CTAACCTCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGCGGGS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:14113243-14113363 5.8e-06 93_[+3]_19 chr3R:6672734-6672854 5.8e-06 23_[+3]_89 chr2R:19395293-19395413 5.8e-06 46_[+3]_66 chr2L:1885377-1885497 1.2e-05 93_[+3]_19 chr3L:263639-263759 1.2e-05 80_[+3]_32 chr2L:11005109-11005229 1.2e-05 50_[+3]_62 chr2L:2753940-2754060 1.9e-05 38_[+3]_74 chrX:6990108-6990228 1.9e-05 87_[+3]_25 chr2L:7826636-7826756 2.7e-05 23_[+3]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGCGGGS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGGCGGGS width=8 seqs=9 chr2L:14113243-14113363 ( 94) GGGCGGGG 1 chr3R:6672734-6672854 ( 24) GGGCGGGG 1 chr2R:19395293-19395413 ( 47) GGGCGGGG 1 chr2L:1885377-1885497 ( 94) GGGCGGGC 1 chr3L:263639-263759 ( 81) GGGCGGGC 1 chr2L:11005109-11005229 ( 51) GGGCGGGC 1 chr2L:2753940-2754060 ( 39) AGGCGGGG 1 chrX:6990108-6990228 ( 88) AGGCGGGG 1 chr2L:7826636-7826756 ( 24) AGGCGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGCGGGS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4638 E= 1.5e+004 26 -982 159 -982 -982 -982 218 -982 -982 -982 218 -982 -982 214 -982 -982 -982 -982 218 -982 -982 -982 218 -982 -982 -982 218 -982 -982 97 133 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGCGGGS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.5e+004 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.444444 0.555556 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGCGGGS MEME-3 regular expression -------------------------------------------------------------------------------- [GA]GGCGGG[GC] -------------------------------------------------------------------------------- Time 19.24 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCGGCTG MEME-4 width = 8 sites = 10 llr = 105 E-value = 2.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGGCTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::82:a:: probability G :a:8a::a matrix T a:2:::a: bits 2.2 * ** * 2.0 ** **** 1.7 ** **** 1.5 ** ***** Relative 1.3 ******** Entropy 1.1 ******** (15.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCGGCTG consensus TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGCTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5360749-5360869 92 9.30e-06 GGTGACTGTG TGCGGCTG TATGTGCGTG chr3L:16773404-16773524 102 9.30e-06 AAAAATCCTG TGCGGCTG AAAGCGGCAG chr2R:13199029-13199149 113 9.30e-06 ACAAGAAGGC TGCGGCTG chr3R:22488745-22488865 40 9.30e-06 CAGTTCGTTC TGCGGCTG CTCCGGCTGA chr3R:20594032-20594152 101 9.30e-06 CACGTGCTCT TGCGGCTG ATAACAAACA chr2R:22799598-22799718 84 9.30e-06 TGAGGTTAGG TGCGGCTG TCAAGCAAGT chr3R:27947043-27947163 105 1.88e-05 GTTATGTTCA TGCCGCTG CTCCTCCG chr2R:22645774-22645894 56 1.88e-05 ACCTACAAAG TGCCGCTG ATTAGCGGCA chr2L:5982905-5983025 12 3.01e-05 AACCAACAAT TGTGGCTG GAAAATTTTT chr3R:23780870-23780990 103 3.01e-05 GCTGAGCTGG TGTGGCTG CCGCACCGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGCTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5360749-5360869 9.3e-06 91_[+4]_21 chr3L:16773404-16773524 9.3e-06 101_[+4]_11 chr2R:13199029-13199149 9.3e-06 112_[+4] chr3R:22488745-22488865 9.3e-06 39_[+4]_73 chr3R:20594032-20594152 9.3e-06 100_[+4]_12 chr2R:22799598-22799718 9.3e-06 83_[+4]_29 chr3R:27947043-27947163 1.9e-05 104_[+4]_8 chr2R:22645774-22645894 1.9e-05 55_[+4]_57 chr2L:5982905-5983025 3e-05 11_[+4]_101 chr3R:23780870-23780990 3e-05 102_[+4]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGCTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGGCTG width=8 seqs=10 chr3L:5360749-5360869 ( 92) TGCGGCTG 1 chr3L:16773404-16773524 ( 102) TGCGGCTG 1 chr2R:13199029-13199149 ( 113) TGCGGCTG 1 chr3R:22488745-22488865 ( 40) TGCGGCTG 1 chr3R:20594032-20594152 ( 101) TGCGGCTG 1 chr2R:22799598-22799718 ( 84) TGCGGCTG 1 chr3R:27947043-27947163 ( 105) TGCCGCTG 1 chr2R:22645774-22645894 ( 56) TGCCGCTG 1 chr2L:5982905-5983025 ( 12) TGTGGCTG 1 chr3R:23780870-23780990 ( 103) TGTGGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGCTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4072 E= 2.6e+003 -997 -997 -997 186 -997 -997 218 -997 -997 182 -997 -46 -997 -18 186 -997 -997 -997 218 -997 -997 214 -997 -997 -997 -997 -997 186 -997 -997 218 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGCTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.6e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGCTG MEME-4 regular expression -------------------------------------------------------------------------------- TG[CT][GC]GCTG -------------------------------------------------------------------------------- Time 25.10 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGGTGG MEME-5 width = 8 sites = 2 llr = 24 E-value = 4.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGGTGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G aaaaa:aa matrix T :::::a:: bits 2.2 ***** ** 2.0 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGTGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGTGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:1885377-1885497 4 7.08e-06 TCC GGGGGTGG ACCACATTCC chr3R:10138981-10139101 107 7.08e-06 atgagggggg gggggtgg CTCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGTGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1885377-1885497 7.1e-06 3_[+5]_109 chr3R:10138981-10139101 7.1e-06 106_[+5]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGTGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGGTGG width=8 seqs=2 chr2L:1885377-1885497 ( 4) GGGGGTGG 1 chr3R:10138981-10139101 ( 107) GGGGGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGTGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 4.2e+004 -765 -765 217 -765 -765 -765 217 -765 -765 -765 217 -765 -765 -765 217 -765 -765 -765 217 -765 -765 -765 -765 186 -765 -765 217 -765 -765 -765 217 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGTGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.2e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGTGG MEME-5 regular expression -------------------------------------------------------------------------------- GGGGGTGG -------------------------------------------------------------------------------- Time 30.95 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:9894332-9894452 1.97e-02 45_[+1(1.90e-05)]_67 chr2L:7826636-7826756 4.95e-03 23_[+3(2.68e-05)]_1_[+1(1.90e-05)]_\ 80 chr3R:30395008-30395128 2.69e-02 14_[+1(1.90e-05)]_15_[+1(1.90e-05)]_\ 15_[+1(1.90e-05)]_52 chr2R:8155111-8155231 1.48e-03 35_[+1(1.90e-05)]_77 chr3R:23780870-23780990 1.26e-04 10_[+1(5.78e-05)]_68_[+3(6.83e-05)]_\ 8_[+4(3.01e-05)]_10 chrX:2789408-2789528 9.74e-02 64_[+2(1.73e-05)]_48 chr3R:27958099-27958219 1.99e-02 44_[+1(4.23e-05)]_68 chrX:8180011-8180131 1.22e-01 58_[+2(1.73e-05)]_54 chr2L:10057739-10057859 2.96e-02 60_[+1(1.90e-05)]_52 chrX:19480867-19480987 2.99e-03 71_[+1(1.90e-05)]_41 chr2R:24175387-24175507 7.87e-02 47_[+1(1.90e-05)]_65 chrX:18108807-18108927 1.94e-01 32_[+1(1.90e-05)]_19_[+1(1.90e-05)]_\ 53 chr2R:17547033-17547153 3.40e-01 120 chr2L:12975390-12975510 3.02e-01 120 chr3R:10482508-10482628 3.86e-02 58_[+2(1.73e-05)]_54 chr3R:5646915-5647035 6.32e-02 43_[+1(1.90e-05)]_69 chrX:21337815-21337935 2.48e-01 70_[+1(8.86e-05)]_42 chr2L:295609-295729 4.46e-02 64_[+1(1.90e-05)]_1_[+1(7.29e-05)]_\ 39 chr3R:25249871-25249991 8.58e-02 105_[+2(1.73e-05)]_7 chr2R:24903285-24903405 3.79e-01 52_[+2(9.19e-05)]_60 chr3L:15089994-15090114 4.32e-01 120 chrX:6268291-6268411 1.93e-01 87_[+2(1.73e-05)]_25 chr2L:5803835-5803955 4.85e-02 28_[+1(1.90e-05)]_84 chr3R:18226890-18227010 1.06e-02 72_[+2(1.73e-05)]_40 chr2R:6756600-6756720 3.10e-01 53_[+2(9.19e-05)]_59 chrX:12626016-12626136 9.37e-02 64_[+2(1.73e-05)]_48 chr3L:21176691-21176811 5.13e-03 50_[+2(3.89e-05)]_4_[+1(7.29e-05)]_\ 50 chr2L:10004149-10004269 1.40e-01 88_[+1(1.90e-05)]_24 chr3L:770426-770546 6.18e-02 120 chrX:16289138-16289258 7.84e-03 83_[+2(6.08e-05)]_29 chr3R:7977124-7977244 7.84e-02 57_[+2(6.08e-05)]_55 chr3R:9748403-9748523 3.86e-01 120 chr2L:11005109-11005229 1.73e-02 50_[+3(1.18e-05)]_62 chr3L:12276397-12276517 3.71e-01 120 chr2R:15528818-15528938 1.62e-01 43_[+1(1.90e-05)]_69 chrX:492750-492870 3.53e-03 43_[+1(1.90e-05)]_69 chr3L:12815868-12815988 7.99e-02 53_[+2(1.73e-05)]_59 chr3R:19028004-19028124 1.73e-01 70_[+2(1.73e-05)]_42 chr2R:15250204-15250324 2.27e-01 87_[+2(1.73e-05)]_25 chr3L:14037781-14037901 2.57e-01 120 chr3L:11374335-11374455 1.12e-01 56_[+2(1.73e-05)]_56 chr2R:10807991-10808111 1.25e-01 29_[+2(3.89e-05)]_21_[+2(1.73e-05)]_\ 54 chr2R:7565013-7565133 6.99e-02 30_[+1(1.90e-05)]_82 chrX:19736091-19736211 1.99e-01 62_[+2(3.89e-05)]_50 chr2R:12175257-12175377 1.41e-01 85_[+2(1.73e-05)]_27 chrX:16462360-16462480 8.43e-03 21_[+1(1.90e-05)]_11_[+1(1.90e-05)]_\ 11_[+1(1.90e-05)]_53 chrX:11497990-11498110 3.35e-02 49_[+1(1.90e-05)]_63 chr3R:7094523-7094643 2.47e-01 120 chr2L:1158790-1158910 1.76e-01 120 chr2R:14244018-14244138 1.86e-01 89_[+1(1.90e-05)]_23 chr2L:8364149-8364269 1.24e-01 3_[+1(1.90e-05)]_109 chr3R:10138981-10139101 4.30e-05 25_[+1(1.90e-05)]_73_[+5(7.08e-06)]_\ 6 chr2R:19395293-19395413 1.64e-05 46_[+3(5.84e-06)]_13_[+1(7.29e-05)]_\ 45 chr4:193534-193654 8.90e-01 120 chr2L:19754937-19755057 2.26e-01 120 chr3L:263639-263759 1.25e-03 28_[+2(9.19e-05)]_44_[+3(1.18e-05)]_\ 32 chr3L:5157939-5158059 5.23e-02 42_[+1(1.90e-05)]_70 chr2R:6085236-6085356 2.10e-02 36_[+1(1.90e-05)]_76 chrX:4198926-4199046 2.44e-02 30_[+1(1.90e-05)]_82 chr2R:16197500-16197620 3.64e-01 78_[+1(4.23e-05)]_34 chr2L:21758286-21758406 9.89e-01 120 chr2L:12435592-12435712 1.48e-03 33_[+2(3.89e-05)]_20_[+1(1.90e-05)]_\ 51 chr3L:12145849-12145969 2.59e-01 120 chr3R:26867311-26867431 4.87e-01 120 chr2R:5259576-5259696 1.26e-01 48_[+2(1.73e-05)]_64 chr3L:7157854-7157974 1.28e-01 4_[+2(1.73e-05)]_108 chr2L:21168980-21169100 3.95e-02 50_[+1(4.23e-05)]_62 chr3R:28328458-28328578 2.05e-03 38_[+2(1.73e-05)]_74 chr3R:30283172-30283292 6.16e-02 72_[+2(1.73e-05)]_40 chr2R:24664642-24664762 2.04e-01 120 chr3L:15520099-15520219 1.83e-01 80_[+2(6.08e-05)]_32 chr2L:346303-346423 1.37e-01 120 chr2L:20735595-20735715 1.92e-02 86_[+1(1.90e-05)]_26 chrX:10865610-10865730 2.82e-01 42_[+1(4.23e-05)]_70 chr3R:20850921-20851041 7.63e-02 56_[+1(4.23e-05)]_56 chr3R:16436478-16436598 4.28e-01 120 chr3R:9235854-9235974 5.57e-03 81_[+2(1.73e-05)]_31 chr2L:2873867-2873987 4.00e-01 120 chrX:10003967-10004087 2.34e-01 46_[+1(1.90e-05)]_9_[+1(1.90e-05)]_\ 12_[+1(1.90e-05)]_29 chr3L:3908911-3909031 6.57e-02 48_[+2(1.73e-05)]_64 chrX:10742966-10743086 1.51e-01 30_[+2(9.19e-05)]_82 chr2R:18406071-18406191 9.11e-02 120 chrX:19520960-19521080 6.70e-02 40_[+2(1.73e-05)]_72 chrX:12682663-12682783 3.80e-01 120 chr3R:9678230-9678350 3.62e-01 120 chr2L:19735467-19735587 7.04e-03 16_[+2(3.89e-05)]_96 chrX:15746929-15747049 8.95e-02 101_[+2(1.73e-05)]_11 chr2R:22531512-22531632 2.15e-01 86_[+2(1.73e-05)]_26 chr2R:20585586-20585706 1.81e-01 59_[+1(1.90e-05)]_53 chr2R:18819690-18819810 7.65e-01 120 chr3R:9783641-9783761 1.40e-01 120 chr3R:15262809-15262929 5.89e-02 56_[+2(1.73e-05)]_56 chr2R:11360762-11360882 2.16e-01 120 chr3R:28585951-28586071 1.57e-01 70_[+2(1.73e-05)]_42 chr2L:6558097-6558217 2.05e-02 120 chr2L:2959558-2959678 4.98e-02 54_[+1(1.90e-05)]_58 chr2L:292490-292610 3.01e-01 120 chr3R:24108345-24108465 9.23e-05 12_[+1(4.23e-05)]_100 chrX:254855-254975 1.35e-01 120 chr3L:11113062-11113182 5.31e-01 120 chr3R:4350730-4350850 2.68e-03 3_[+1(1.90e-05)]_109 chr3R:22491085-22491205 5.78e-01 120 chr4:866576-866696 3.41e-01 22_[+1(4.23e-05)]_90 chr3L:263839-263959 9.94e-01 120 chr2R:22515558-22515678 1.18e-01 45_[+1(1.90e-05)]_67 chr4:423883-424003 8.50e-01 120 chrX:1670012-1670132 5.45e-04 73_[+2(1.73e-05)]_39 chr2L:3466470-3466590 1.22e-01 70_[+1(1.90e-05)]_42 chrX:3299134-3299254 8.02e-02 94_[+2(1.73e-05)]_18 chr2L:10314926-10315046 1.12e-03 120 chr3R:6672734-6672854 2.24e-04 23_[+3(5.84e-06)]_29_[+2(3.89e-05)]_\ 52 chr2R:22799598-22799718 3.90e-04 73_[+2(1.73e-05)]_2_[+4(9.30e-06)]_\ 29 chr2L:8111014-8111134 8.56e-02 10_[+1(4.23e-05)]_102 chrX:10213122-10213242 1.57e-03 120 chr3R:23693937-23694057 1.44e-01 62_[+1(1.90e-05)]_50 chr3R:15836890-15837010 1.75e-03 18_[+1(1.90e-05)]_94 chr2L:7293097-7293217 9.40e-02 47_[+1(1.90e-05)]_65 chrX:6266081-6266201 1.51e-01 42_[+2(1.73e-05)]_70 chr2L:6920701-6920821 2.84e-02 25_[+2(3.89e-05)]_87 chr2L:7064328-7064448 9.45e-01 120 chrX:11155910-11156030 9.44e-01 120 chr3R:15681049-15681169 1.04e-02 55_[+2(1.73e-05)]_57 chr2R:22645774-22645894 1.07e-02 55_[+4(1.88e-05)]_57 chrX:5422280-5422400 2.10e-03 68_[+1(1.90e-05)]_44 chr3L:8975237-8975357 6.83e-02 39_[+1(4.23e-05)]_73 chrX:1964519-1964639 1.16e-01 59_[+2(1.73e-05)]_53 chrX:13753502-13753622 4.84e-01 120 chrX:11147883-11148003 7.54e-02 80_[+1(1.90e-05)]_32 chr3L:10812128-10812248 9.90e-01 120 chr3L:16574988-16575108 2.22e-01 120 chrX:15584191-15584311 3.04e-01 58_[+1(4.23e-05)]_54 chr3R:9865973-9866093 4.71e-02 55_[+2(3.89e-05)]_57 chrX:8194795-8194915 7.04e-02 101_[+1(1.90e-05)]_11 chr2R:14164417-14164537 7.75e-02 6_[+1(1.90e-05)]_106 chr3L:7382081-7382201 7.49e-02 120 chrX:17247034-17247154 4.50e-02 93_[+2(1.73e-05)]_19 chr3R:14739676-14739796 4.59e-02 40_[+2(3.89e-05)]_72 chr3L:1330296-1330416 4.02e-03 54_[+1(1.90e-05)]_7_[+3(5.47e-05)]_\ 43 chr3L:19663484-19663604 9.92e-01 120 chr3R:20594032-20594152 5.09e-04 64_[+2(1.73e-05)]_28_[+4(9.30e-06)]_\ 12 chrX:7707486-7707606 9.85e-01 120 chrX:6089851-6089971 3.98e-01 19_[+1(8.86e-05)]_93 chr3R:30416926-30417046 5.51e-02 24_[+2(1.73e-05)]_88 chr3R:27947043-27947163 1.01e-03 80_[+2(1.73e-05)]_16_[+4(1.88e-05)]_\ 8 chr3R:22488745-22488865 2.50e-02 39_[+4(9.30e-06)]_73 chr2L:18454266-18454386 8.58e-01 120 chr3L:4253679-4253799 2.33e-02 65_[+1(8.86e-05)]_47 chr2L:7007664-7007784 4.63e-02 32_[+2(1.73e-05)]_80 chr2L:18642394-18642514 5.05e-01 120 chr2R:8953009-8953129 6.44e-02 68_[+1(4.23e-05)]_44 chr2R:18142274-18142394 2.84e-01 61_[+2(3.89e-05)]_51 chr2L:4967550-4967670 2.12e-01 13_[+2(6.08e-05)]_99 chrX:15498144-15498264 1.68e-03 58_[+2(1.73e-05)]_54 chr3R:9702036-9702156 1.98e-01 120 chrX:16424373-16424493 8.56e-01 120 chr3L:8178104-8178224 9.72e-01 120 chr3R:24163274-24163394 7.70e-02 28_[+2(9.19e-05)]_84 chr2R:19446523-19446643 9.76e-01 120 chrX:8780850-8780970 1.66e-01 46_[+1(1.90e-05)]_66 chrX:9089885-9090005 1.88e-02 120 chr2R:16593884-16594004 2.53e-02 48_[+1(1.90e-05)]_64 chr2R:13199029-13199149 5.71e-04 112_[+4(9.30e-06)] chrX:19294225-19294345 2.66e-01 107_[+1(8.86e-05)]_5 chr2R:8148771-8148891 2.83e-02 33_[+2(1.73e-05)]_79 chr2L:2152030-2152150 1.52e-01 120 chr2R:12321197-12321317 6.31e-01 120 chrX:15991757-15991877 2.68e-01 120 chr2L:8907488-8907608 1.74e-01 36_[+1(4.23e-05)]_76 chr2L:19958913-19959033 7.72e-01 120 chr2L:1885377-1885497 7.99e-06 3_[+5(7.08e-06)]_82_[+3(1.18e-05)]_\ 19 chr3R:13978273-13978393 1.05e-01 47_[+2(1.73e-05)]_65 chr2L:5982905-5983025 1.82e-02 11_[+4(3.01e-05)]_101 chr3R:21198516-21198636 3.26e-01 120 chr2R:10049815-10049935 3.49e-01 85_[+2(6.08e-05)]_27 chr3L:11109592-11109712 9.96e-01 120 chr2R:20670150-20670270 1.20e-01 120 chrX:5420380-5420500 1.97e-01 120 chr2R:24941396-24941516 2.96e-03 94_[+2(3.89e-05)]_18 chr2L:21089416-21089536 6.05e-01 120 chr3R:23680427-23680547 2.96e-02 14_[+2(1.73e-05)]_98 chrX:17143404-17143524 2.50e-01 66_[+1(1.90e-05)]_46 chr3R:14890478-14890598 6.17e-01 120 chr3R:13648088-13648208 1.07e-02 22_[+1(1.90e-05)]_90 chr3L:11511402-11511522 5.19e-01 120 chrX:9090084-9090204 6.66e-01 120 chrX:13210625-13210745 8.39e-02 120 chr3L:7238545-7238665 7.50e-01 120 chrX:12750061-12750181 3.91e-02 58_[+2(1.73e-05)]_54 chr3R:14575571-14575691 8.51e-01 120 chr2R:23811951-23812071 3.30e-01 120 chrX:6990108-6990228 1.55e-02 87_[+3(1.92e-05)]_25 chrX:15301397-15301517 2.25e-01 120 chr2L:4968945-4969065 3.98e-01 120 chr2L:1613894-1614014 6.70e-01 120 chr3R:13647888-13648008 3.53e-01 120 chr2L:4886292-4886412 2.97e-01 45_[+2(6.08e-05)]_67 chr2R:14360184-14360304 2.50e-03 29_[+2(1.73e-05)]_83 chrX:8265390-8265510 2.27e-02 19_[+1(5.78e-05)]_93 chr3L:5367859-5367979 6.99e-01 120 chr3L:16773404-16773524 2.63e-03 61_[+2(3.89e-05)]_32_[+4(9.30e-06)]_\ 11 chr2R:24783429-24783549 5.96e-02 120 chr2R:8906926-8907046 8.99e-02 44_[+1(1.90e-05)]_68 chr2L:7424656-7424776 1.66e-01 54_[+2(1.73e-05)]_58 chr3L:5360749-5360869 7.47e-04 56_[+1(1.90e-05)]_27_[+4(9.30e-06)]_\ 21 chr3L:20453494-20453614 9.18e-01 120 chr2R:12592162-12592282 7.08e-02 57_[+2(1.73e-05)]_55 chr3R:29935865-29935985 4.86e-01 120 chrX:9158395-9158515 6.26e-01 120 chr3R:8799978-8800098 2.22e-02 120 chr2L:6792207-6792327 1.33e-01 64_[+1(1.90e-05)]_48 chr3R:16180598-16180718 3.75e-01 120 chr3L:21256849-21256969 4.41e-02 51_[+1(1.90e-05)]_61 chr3R:17566747-17566867 3.80e-02 66_[+2(1.73e-05)]_46 chr2R:19450717-19450837 2.82e-01 10_[+2(3.89e-05)]_102 chr2R:16320696-16320816 2.13e-01 120 chr2L:19123748-19123868 7.56e-01 120 chr3R:16455964-16456084 1.09e-01 120 chr2L:13004600-13004720 9.77e-02 78_[+1(5.78e-05)]_34 chrX:16638261-16638381 3.06e-03 76_[+1(1.90e-05)]_36 chr2L:14113243-14113363 8.13e-05 45_[+1(1.90e-05)]_40_[+3(5.84e-06)]_\ 19 chr3R:24234411-24234531 6.64e-01 120 chr3L:12814943-12815063 9.02e-01 120 chr2L:21681659-21681779 1.48e-01 24_[+2(1.73e-05)]_88 chr3R:21631980-21632100 9.76e-02 46_[+2(9.19e-05)]_66 chr3L:8787782-8787902 6.99e-02 56_[+2(3.89e-05)]_56 chr3R:25050664-25050784 2.03e-01 120 chr3R:27988030-27988150 9.75e-01 120 chr3R:16647743-16647863 4.73e-02 65_[+1(1.90e-05)]_47 chr2R:23808949-23809069 1.68e-01 35_[+2(3.89e-05)]_77 chrX:2419698-2419818 9.24e-01 120 chrX:1482924-1483044 8.40e-03 24_[+1(1.90e-05)]_88 chr2L:10004349-10004469 3.18e-01 120 chr2R:7917376-7917496 8.10e-04 104_[+5(2.58e-05)]_8 chr2R:14216223-14216343 8.88e-01 120 chrX:9599372-9599492 1.80e-02 39_[+1(1.90e-05)]_73 chr3L:1628594-1628714 1.04e-01 110_[+2(6.08e-05)]_2 chr2R:24941601-24941721 2.54e-01 120 chr3R:26253932-26254052 1.55e-01 21_[+1(1.90e-05)]_91 chr3R:23933749-23933869 9.03e-01 120 chr2L:2753940-2754060 1.96e-04 38_[+3(1.92e-05)]_74 chr3L:11293442-11293562 3.36e-02 35_[+1(1.90e-05)]_77 chr2R:9863637-9863757 8.15e-02 88_[+2(9.19e-05)]_24 chr2L:7424856-7424976 9.30e-01 120 chr3R:14890686-14890806 8.97e-01 120 chr2R:17665896-17666016 1.55e-01 79_[+1(1.90e-05)]_33 chrX:656684-656804 7.30e-01 120 chr3R:19095392-19095512 9.64e-01 120 chr3L:833036-833156 3.16e-01 120 chr2L:6966441-6966561 1.94e-01 48_[+2(1.73e-05)]_64 chr3L:16610363-16610483 7.05e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************