******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/bcd.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:19140510-19140630 1.0000 120 chr3L:14029105-14029225 1.0000 120 chr3R:25648128-25648248 1.0000 120 chr3L:11815317-11815437 1.0000 120 chrX:13288210-13288330 1.0000 120 chr3L:19914931-19915051 1.0000 120 chr3R:23763192-23763312 1.0000 120 chrX:7703094-7703214 1.0000 120 chrX:351111-351231 1.0000 120 chr3R:29748905-29749025 1.0000 120 chr2R:7474219-7474339 1.0000 120 chr2R:15322333-15322453 1.0000 120 chr2L:16869120-16869240 1.0000 120 chr3R:26105947-26106067 1.0000 120 chr3L:11336514-11336634 1.0000 120 chr2R:15034848-15034968 1.0000 120 chr2R:7054318-7054438 1.0000 120 chr3R:7977780-7977900 1.0000 120 chr3L:27267168-27267288 1.0000 120 chr3R:13964596-13964716 1.0000 120 chr3R:20555149-20555269 1.0000 120 chrX:11081384-11081504 1.0000 120 chr3L:22277365-22277485 1.0000 120 chrX:10362934-10363054 1.0000 120 chr3R:25123357-25123477 1.0000 120 chr2R:9388613-9388733 1.0000 120 chr3R:6760952-6761072 1.0000 120 chrX:19107049-19107169 1.0000 120 chr2R:21018389-21018509 1.0000 120 chrX:2011719-2011839 1.0000 120 chr2R:12521319-12521439 1.0000 120 chr2R:10854314-10854434 1.0000 120 chr3L:8604433-8604553 1.0000 120 chr3L:16232021-16232141 1.0000 120 chr3R:21373535-21373655 1.0000 120 chr2R:24293570-24293690 1.0000 120 chr2L:1980750-1980870 1.0000 120 chrX:6524373-6524493 1.0000 120 chr3R:9039636-9039756 1.0000 120 chr2L:523712-523832 1.0000 120 chr2R:14644935-14645055 1.0000 120 chrX:8542150-8542270 1.0000 120 chr2R:19292138-19292258 1.0000 120 chr3R:26280480-26280600 1.0000 120 chr3R:22878561-22878681 1.0000 120 chr3R:24544434-24544554 1.0000 120 chr3R:10688982-10689102 1.0000 120 chr3R:22754357-22754477 1.0000 120 chr2R:12403775-12403895 1.0000 120 chrX:20257375-20257495 1.0000 120 chr3R:29089807-29089927 1.0000 120 chr3R:10675257-10675377 1.0000 120 chr2R:21178806-21178926 1.0000 120 chrX:15591976-15592096 1.0000 120 chr2R:7916702-7916822 1.0000 120 chr3R:30325582-30325702 1.0000 120 chrX:2136513-2136633 1.0000 120 chrX:13329680-13329800 1.0000 120 chr2R:14971280-14971400 1.0000 120 chr3R:29859917-29860037 1.0000 120 chr3L:1035112-1035232 1.0000 120 chr3L:8629076-8629196 1.0000 120 chr2R:11219237-11219357 1.0000 120 chr3R:22023366-22023486 1.0000 120 chr2R:12636580-12636700 1.0000 120 chr3R:14875604-14875724 1.0000 120 chr3L:19216584-19216704 1.0000 120 chrX:20631254-20631374 1.0000 120 chr3R:29068935-29069055 1.0000 120 chr3R:15250626-15250746 1.0000 120 chr2R:14305308-14305428 1.0000 120 chr3R:21156261-21156381 1.0000 120 chr2L:16743104-16743224 1.0000 120 chr3R:27153462-27153582 1.0000 120 chr3L:13923432-13923552 1.0000 120 chr2L:10522634-10522754 1.0000 120 chrX:2166243-2166363 1.0000 120 chr2L:4459718-4459838 1.0000 120 chr3R:26444278-26444398 1.0000 120 chr3L:4379051-4379171 1.0000 120 chr3L:13905695-13905815 1.0000 120 chr2R:16170812-16170932 1.0000 120 chrX:20507827-20507947 1.0000 120 chrX:12470701-12470821 1.0000 120 chr2L:15039373-15039493 1.0000 120 chr2L:8528483-8528603 1.0000 120 chrX:19166354-19166474 1.0000 120 chrX:16854848-16854968 1.0000 120 chr3R:18366442-18366562 1.0000 120 chr3L:9614088-9614208 1.0000 120 chr2R:5128336-5128456 1.0000 120 chr3R:23028634-23028754 1.0000 120 chr2L:20097244-20097364 1.0000 120 chrX:5312122-5312242 1.0000 120 chr3R:6791432-6791552 1.0000 120 chr3R:21187125-21187245 1.0000 120 chrX:9652163-9652283 1.0000 120 chr2L:11528268-11528388 1.0000 120 chr3R:10100688-10100808 1.0000 120 chr2L:10698118-10698238 1.0000 120 chr2R:19127975-19128095 1.0000 120 chr3R:28676970-28677090 1.0000 120 chr3R:10884175-10884295 1.0000 120 chr2R:21017607-21017727 1.0000 120 chr3R:26121134-26121254 1.0000 120 chrX:4262796-4262916 1.0000 120 chr2L:3598619-3598739 1.0000 120 chr2R:15114530-15114650 1.0000 120 chr2L:10856731-10856851 1.0000 120 chr2L:15254375-15254495 1.0000 120 chr2R:10303707-10303827 1.0000 120 chr2R:4516465-4516585 1.0000 120 chrX:17738005-17738125 1.0000 120 chr2L:12721108-12721228 1.0000 120 chr3R:30305019-30305139 1.0000 120 chr3R:26117805-26117925 1.0000 120 chr2R:5122313-5122433 1.0000 120 chrX:1512881-1513001 1.0000 120 chr3R:29799540-29799660 1.0000 120 chr3L:16710413-16710533 1.0000 120 chr3L:18791575-18791695 1.0000 120 chr3R:26052491-26052611 1.0000 120 chrX:22837505-22837625 1.0000 120 chrX:12925974-12926094 1.0000 120 chr2R:7254437-7254557 1.0000 120 chr3R:22625884-22626004 1.0000 120 chr2R:13429196-13429316 1.0000 120 chr2R:24657138-24657258 1.0000 120 chr3L:5185265-5185385 1.0000 120 chr3L:8024968-8025088 1.0000 120 chr2L:22536653-22536773 1.0000 120 chr3R:26172156-26172276 1.0000 120 chr3R:19627918-19628038 1.0000 120 chr2L:6874704-6874824 1.0000 120 chrX:13391263-13391383 1.0000 120 chr3R:26654724-26654844 1.0000 120 chr2R:7052444-7052564 1.0000 120 chr3L:15592629-15592749 1.0000 120 chr2R:18528524-18528644 1.0000 120 chr3L:15094865-15094985 1.0000 120 chr2R:20671055-20671175 1.0000 120 chr3R:20989737-20989857 1.0000 120 chr2R:12468394-12468514 1.0000 120 chr2R:11921078-11921198 1.0000 120 chr2R:11204291-11204411 1.0000 120 chr3R:21270043-21270163 1.0000 120 chr2R:18829753-18829873 1.0000 120 chr3R:30195713-30195833 1.0000 120 chr2L:4441007-4441127 1.0000 120 chr2R:23383443-23383563 1.0000 120 chr3R:18906426-18906546 1.0000 120 chr3R:5686522-5686642 1.0000 120 chr2R:18514018-18514138 1.0000 120 chr2L:12467867-12467987 1.0000 120 chrX:4010984-4011104 1.0000 120 chr3R:30532133-30532253 1.0000 120 chr3L:9127449-9127569 1.0000 120 chrX:5638648-5638768 1.0000 120 chr3L:5988862-5988982 1.0000 120 chr3R:16222126-16222246 1.0000 120 chr2R:12652601-12652721 1.0000 120 chrX:14215202-14215322 1.0000 120 chr3R:9791308-9791428 1.0000 120 chr3L:8063568-8063688 1.0000 120 chr3R:23347009-23347129 1.0000 120 chr3R:20312958-20313078 1.0000 120 chrX:20394220-20394340 1.0000 120 chrX:10488049-10488169 1.0000 120 chr2R:8914084-8914204 1.0000 120 chr3R:24829985-24830105 1.0000 120 chr2L:16352663-16352783 1.0000 120 chr2L:13398882-13399002 1.0000 120 chrX:5892185-5892305 1.0000 120 chr2R:7466727-7466847 1.0000 120 chr2R:14577729-14577849 1.0000 120 chr2L:7333514-7333634 1.0000 120 chr3L:13911776-13911896 1.0000 120 chr2L:19517426-19517546 1.0000 120 chr3R:30797463-30797583 1.0000 120 chr3L:13450293-13450413 1.0000 120 chr2R:12605698-12605818 1.0000 120 chr2L:18666065-18666185 1.0000 120 chrX:16944109-16944229 1.0000 120 chr3L:17653575-17653695 1.0000 120 chr3R:14347429-14347549 1.0000 120 chr3R:23333825-23333945 1.0000 120 chrX:6856768-6856888 1.0000 120 chr2L:6830505-6830625 1.0000 120 chr3R:15837162-15837282 1.0000 120 chr3R:8960476-8960596 1.0000 120 chr2L:6338728-6338848 1.0000 120 chr3L:21640853-21640973 1.0000 120 chrX:15615589-15615709 1.0000 120 chrX:1322360-1322480 1.0000 120 chrX:3431783-3431903 1.0000 120 chr2L:21787100-21787220 1.0000 120 chrX:8777215-8777335 1.0000 120 chr3L:13479861-13479981 1.0000 120 chr2R:15931969-15932089 1.0000 120 chrX:14765995-14766115 1.0000 120 chr3L:20395336-20395456 1.0000 120 chr3R:13999680-13999800 1.0000 120 chr2L:5045215-5045335 1.0000 120 chr2R:9426479-9426599 1.0000 120 chr2L:6473261-6473381 1.0000 120 chr2R:10142319-10142439 1.0000 120 chr2L:7932467-7932587 1.0000 120 chr2L:5543201-5543321 1.0000 120 chrX:7728423-7728543 1.0000 120 chr3R:12722673-12722793 1.0000 120 chr3R:15145535-15145655 1.0000 120 chr3R:16794351-16794471 1.0000 120 chrX:9641454-9641574 1.0000 120 chr3L:14325454-14325574 1.0000 120 chr2R:9286626-9286746 1.0000 120 chr3L:8692281-8692401 1.0000 120 chr2L:7961274-7961394 1.0000 120 chrX:9349390-9349510 1.0000 120 chr2L:10442339-10442459 1.0000 120 chr3R:31395343-31395463 1.0000 120 chr2L:1628235-1628355 1.0000 120 chr3L:11822495-11822615 1.0000 120 chrX:4906728-4906848 1.0000 120 chr3R:12016923-12017043 1.0000 120 chr3L:21954567-21954687 1.0000 120 chr3L:20634570-20634690 1.0000 120 chr3R:25489233-25489353 1.0000 120 chr3L:10843532-10843652 1.0000 120 chr3L:11350897-11351017 1.0000 120 chr3L:18786878-18786998 1.0000 120 chr3R:24574156-24574276 1.0000 120 chr2L:5999460-5999580 1.0000 120 chr2R:18326644-18326764 1.0000 120 chr3R:9053862-9053982 1.0000 120 chr3R:10265607-10265727 1.0000 120 chr3R:19831103-19831223 1.0000 120 chr2L:21624052-21624172 1.0000 120 chr3R:28887982-28888102 1.0000 120 chr3R:27152482-27152602 1.0000 120 chr3R:30191644-30191764 1.0000 120 chr3R:18795392-18795512 1.0000 120 chrX:19663378-19663498 1.0000 120 chr2R:7031152-7031272 1.0000 120 chr3R:27987449-27987569 1.0000 120 chr3L:2501964-2502084 1.0000 120 chr3R:23332697-23332817 1.0000 120 chr2R:12678164-12678284 1.0000 120 chr3R:18448611-18448731 1.0000 120 chrX:17531945-17532065 1.0000 120 chr2R:24389175-24389295 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_bcd/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/bcd.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.331 C 0.172 G 0.171 T 0.326 Background letter frequencies (from file dataset with add-one prior applied): A 0.331 C 0.172 G 0.171 T 0.326 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF VGCTGCRC MEME-1 width = 8 sites = 37 llr = 322 E-value = 3.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif VGCTGCRC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 22:3::5: pos.-specific C 3:a1:a27 probability G 48::a:33 matrix T :::6:::: bits 2.5 * ** 2.3 * ** 2.0 * ** 1.8 * ** * Relative 1.5 ** ** * Entropy 1.3 ** ** * (12.6 bits) 1.0 ** ** * 0.8 *** ** * 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCTGCAC consensus CA A GG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGCTGCRC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21373535-21373655 59 4.16e-06 GAAGCACCAG GGCTGCAC ATTCAATTAG chr3R:31395343-31395463 10 5.59e-06 ACCTTAATC CGCTGCGC TTTGAGTACA chr2L:16743104-16743224 72 1.34e-05 TAATCTTATG GGCCGCGC TTTTTGAGGT chr3R:25648128-25648248 20 1.34e-05 ACATGTAAAC GGCTGCGG CTGTGTAAAA chrX:1322360-1322480 73 2.18e-05 GCTCCGCTCT GGCAGCAC TTTTCCGGAG chr3L:21640853-21640973 21 2.18e-05 GCGCCAACTG GGCAGCAC TGGTAGCGCC chr2R:8914084-8914204 14 2.18e-05 ATCTCGATGT GGCAGCAC GCTCGGTGTT chrX:12925974-12926094 108 2.18e-05 GCGTGGTGCA GGCTGCAG GACCA chrX:20257375-20257495 43 2.18e-05 CTAATTAAGC GGCAGCAC TGATTAGCTG chrX:6524373-6524493 107 2.18e-05 GCGGCCGCAT GGCCGCAC TAAAAA chr2R:12521319-12521439 62 2.18e-05 TCTTATGATG GGCAGCAC TGTTTCCGCT chrX:13288210-13288330 94 2.18e-05 AGCAATCCAC CGCTGCCC CTCCCCCTTC chr2L:1980750-1980870 37 2.54e-05 GGCGATAGGC CGCTGCGG TCACACTGCG chr3L:19914931-19915051 111 2.54e-05 GCCTGGCGTT CGCCGCGC GG chr3R:27152482-27152602 1 3.24e-05 . CGCCGCAC ATAATTCGTA chr2L:4441007-4441127 78 3.24e-05 GAAATCACTT CGCTGCAG GAATTTCTCG chr3R:23028634-23028754 58 4.41e-05 GAAAAAAATT AGCTGCAC ACAGAAGATT chrX:13329680-13329800 110 4.41e-05 TCCGTGTTGC GGCAGCCC TGG chr3R:24544434-24544554 26 4.41e-05 TTATTAATAC AGCTGCAC AACATTTTAT chr3R:23763192-23763312 87 4.41e-05 ACGAAGAGCT AGCTGCAC AGCACTGGCT chr2R:12636580-12636700 71 5.41e-05 CCGCCACCGT CGCTGCCG CAGCCAACTT chrX:19107049-19107169 103 5.69e-05 AGCTAGAAGT GACTGCGC CACACGCCAA chr2L:5045215-5045335 65 6.71e-05 TAAAATCAAC AGCTGCCC TTTAATTGCA chrX:17738005-17738125 51 6.71e-05 TGTTCTTTTT CGCCGCGG TAGCTATCAT chr2R:10303707-10303827 82 6.71e-05 ATATTTGTGC AGCTGCCC CAACAATTCC chr3R:24574156-24574276 14 8.11e-05 ACATATATAC AGCTGCGG TGAAAATAAT chr2L:18666065-18666185 39 8.11e-05 ACTACTCGCA AGCAGCGC TCTAATCGGC chrX:2166243-2166363 16 8.11e-05 TACGCCGCAA CACTGCGC GAAAATGTGC chr3R:18795392-18795512 87 1.02e-04 ACTTTTTGAT CACTGCAC AGATGTCCTT chr3R:23347009-23347129 20 1.02e-04 AATGTGGGAA AGCTGCAG CTTGGGAAAA chrX:19166354-19166474 9 1.02e-04 ACACGCAT AGCTGCAG TCAAAATAAT chr2R:11204291-11204411 3 1.05e-04 TA GACTGCCC TATAAAACCT chr3L:11815317-11815437 111 1.14e-04 TCGACCGGGT GACAGCGC CA chr2L:21624052-21624172 6 1.37e-04 CTATG GACTGCAG TGTGCGAAGT chrX:12470701-12470821 39 1.37e-04 GTAGAGTTTT GACTGCAG TAAAACAAAA chr2L:22536653-22536773 97 1.70e-04 GCGTCAAAGG CACAGCAC AACTTATGGA chrX:2136513-2136633 60 1.70e-04 AAGCCACAGT CACAGCAC TAAGTACTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGCTGCRC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21373535-21373655 4.2e-06 58_[+1]_54 chr3R:31395343-31395463 5.6e-06 9_[+1]_103 chr2L:16743104-16743224 1.3e-05 71_[+1]_41 chr3R:25648128-25648248 1.3e-05 19_[+1]_93 chrX:1322360-1322480 2.2e-05 72_[+1]_40 chr3L:21640853-21640973 2.2e-05 20_[+1]_92 chr2R:8914084-8914204 2.2e-05 13_[+1]_99 chrX:12925974-12926094 2.2e-05 107_[+1]_5 chrX:20257375-20257495 2.2e-05 42_[+1]_70 chrX:6524373-6524493 2.2e-05 106_[+1]_6 chr2R:12521319-12521439 2.2e-05 61_[+1]_51 chrX:13288210-13288330 2.2e-05 93_[+1]_19 chr2L:1980750-1980870 2.5e-05 36_[+1]_76 chr3L:19914931-19915051 2.5e-05 110_[+1]_2 chr3R:27152482-27152602 3.2e-05 [+1]_112 chr2L:4441007-4441127 3.2e-05 77_[+1]_35 chr3R:23028634-23028754 4.4e-05 57_[+1]_55 chrX:13329680-13329800 4.4e-05 109_[+1]_3 chr3R:24544434-24544554 4.4e-05 25_[+1]_87 chr3R:23763192-23763312 4.4e-05 86_[+1]_26 chr2R:12636580-12636700 5.4e-05 70_[+1]_42 chrX:19107049-19107169 5.7e-05 102_[+1]_10 chr2L:5045215-5045335 6.7e-05 64_[+1]_48 chrX:17738005-17738125 6.7e-05 50_[+1]_62 chr2R:10303707-10303827 6.7e-05 81_[+1]_31 chr3R:24574156-24574276 8.1e-05 13_[+1]_99 chr2L:18666065-18666185 8.1e-05 38_[+1]_74 chrX:2166243-2166363 8.1e-05 15_[+1]_97 chr3R:18795392-18795512 0.0001 86_[+1]_26 chr3R:23347009-23347129 0.0001 19_[+1]_93 chrX:19166354-19166474 0.0001 8_[+1]_104 chr2R:11204291-11204411 0.0001 2_[+1]_110 chr3L:11815317-11815437 0.00011 110_[+1]_2 chr2L:21624052-21624172 0.00014 5_[+1]_107 chrX:12470701-12470821 0.00014 38_[+1]_74 chr2L:22536653-22536773 0.00017 96_[+1]_16 chrX:2136513-2136633 0.00017 59_[+1]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGCTGCRC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VGCTGCRC width=8 seqs=37 chr3R:21373535-21373655 ( 59) GGCTGCAC 1 chr3R:31395343-31395463 ( 10) CGCTGCGC 1 chr2L:16743104-16743224 ( 72) GGCCGCGC 1 chr3R:25648128-25648248 ( 20) GGCTGCGG 1 chrX:1322360-1322480 ( 73) GGCAGCAC 1 chr3L:21640853-21640973 ( 21) GGCAGCAC 1 chr2R:8914084-8914204 ( 14) GGCAGCAC 1 chrX:12925974-12926094 ( 108) GGCTGCAG 1 chrX:20257375-20257495 ( 43) GGCAGCAC 1 chrX:6524373-6524493 ( 107) GGCCGCAC 1 chr2R:12521319-12521439 ( 62) GGCAGCAC 1 chrX:13288210-13288330 ( 94) CGCTGCCC 1 chr2L:1980750-1980870 ( 37) CGCTGCGG 1 chr3L:19914931-19915051 ( 111) CGCCGCGC 1 chr3R:27152482-27152602 ( 1) CGCCGCAC 1 chr2L:4441007-4441127 ( 78) CGCTGCAG 1 chr3R:23028634-23028754 ( 58) AGCTGCAC 1 chrX:13329680-13329800 ( 110) GGCAGCCC 1 chr3R:24544434-24544554 ( 26) AGCTGCAC 1 chr3R:23763192-23763312 ( 87) AGCTGCAC 1 chr2R:12636580-12636700 ( 71) CGCTGCCG 1 chrX:19107049-19107169 ( 103) GACTGCGC 1 chr2L:5045215-5045335 ( 65) AGCTGCCC 1 chrX:17738005-17738125 ( 51) CGCCGCGG 1 chr2R:10303707-10303827 ( 82) AGCTGCCC 1 chr3R:24574156-24574276 ( 14) AGCTGCGG 1 chr2L:18666065-18666185 ( 39) AGCAGCGC 1 chrX:2166243-2166363 ( 16) CACTGCGC 1 chr3R:18795392-18795512 ( 87) CACTGCAC 1 chr3R:23347009-23347129 ( 20) AGCTGCAG 1 chrX:19166354-19166474 ( 9) AGCTGCAG 1 chr2R:11204291-11204411 ( 3) GACTGCCC 1 chr3L:11815317-11815437 ( 111) GACAGCGC 1 chr2L:21624052-21624172 ( 6) GACTGCAG 1 chrX:12470701-12470821 ( 39) GACTGCAG 1 chr2L:22536653-22536773 ( 97) CACAGCAC 1 chrX:2136513-2136633 ( 60) CACAGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGCTGCRC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9987 E= 3.3e-003 -45 92 134 -1185 -45 -1185 214 -1185 -1185 254 -1185 -1185 -29 -35 -1185 87 -1185 -1185 255 -1185 -1185 254 -1185 -1185 71 -8 80 -1185 -1185 203 80 -1185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGCTGCRC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 3.3e-003 0.243243 0.324324 0.432432 0.000000 0.243243 0.000000 0.756757 0.000000 0.000000 1.000000 0.000000 0.000000 0.270270 0.135135 0.000000 0.594595 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.540541 0.162162 0.297297 0.000000 0.000000 0.702703 0.297297 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGCTGCRC MEME-1 regular expression -------------------------------------------------------------------------------- [GCA][GA]C[TA]GC[AG][CG] -------------------------------------------------------------------------------- Time 7.41 secs. ******************************************************************************** ******************************************************************************** MOTIF CVCSCAMC MEME-2 width = 8 sites = 24 llr = 221 E-value = 9.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CVCSCAMC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :3:::94: pos.-specific C a486a159 probability G :324::11 matrix T :::::::: bits 2.5 * * 2.3 * * 2.0 * * * 1.8 * * * * Relative 1.5 * *** * Entropy 1.3 * **** * (13.3 bits) 1.0 * **** * 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCCCCACC consensus A G A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVCSCAMC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:10100688-10100808 35 1.47e-06 AAATCACCCC CCCCCACC CCATCACACA chr3R:10265607-10265727 98 4.41e-06 GGAGCGAATT CGCCCACC ATCCAGTATC chr2L:5045215-5045335 110 4.41e-06 AATCCGCCTG CCCGCACC ATT chr3L:8604433-8604553 105 4.41e-06 AAATCTCTGG CGCCCACC GTGCAGCA chr3R:10675257-10675377 86 5.86e-06 ATAGTAGTGA CGCGCACC AAATATCTAT chrX:5312122-5312242 44 1.15e-05 TGTTCCCCAC CCCCCAAC ACACTCGGTT chr2R:12403775-12403895 93 1.15e-05 AAACGATAAT CCCCCAAC AACACTTTTC chr3R:24544434-24544554 91 1.44e-05 TTTGTGTAAA CACGCACC GCAACAGTTG chrX:20507827-20507947 22 2.22e-05 GGTTCCCAGG CCCCCAGC CACGTCCCTA chr2L:6338728-6338848 58 2.50e-05 CTGGAAAGTG CGCGCAAC TGAGAAATCC chr2R:10303707-10303827 107 2.80e-05 TCCGCCTCCC CCGCCACC CTTCCC chr2R:12636580-12636700 61 2.80e-05 GATTTGTTTG CCGCCACC GTCGCTGCCG chrX:13288210-13288330 45 2.80e-05 GCGTGGAGAT CGCCCCCC TTCTCCTTTT chr3L:2501964-2502084 52 3.64e-05 CTCTGAAGAG CGCCCAGC TGCTTAAAAC chrX:11081384-11081504 57 3.64e-05 AATCATGAGC CACCCAAC TTCCGCGAGT chr3R:6791432-6791552 82 4.69e-05 CTTGACTGTT CACGCAAC TCAAAATGGG chr2R:19292138-19292258 69 4.69e-05 ACCACTTCGC CACGCAAC ACTACATAAG chr3R:23763192-23763312 17 4.69e-05 AATAGCAAAA CACGCAAC AAACACAAAT chr2L:5999460-5999580 64 5.99e-05 GGGAAAATAC CAGCCACC GTCCGCGTTG chr3R:16222126-16222246 98 5.99e-05 CCAAAACGCC CACGCCCC TGGCTTACCG chr3R:25123357-25123477 20 8.20e-05 TGATATTGAA CCGGCAAC TATCGATTGT chr3R:13964596-13964716 27 8.42e-05 CCGCTTTGTA CGCGCACG TGTTGCCAAC chr3R:29068935-29069055 78 1.12e-04 TTTAAGTGCA CCCCCAAG CATCATAATA chrX:5638648-5638768 17 1.17e-04 tcccaaccac cacccCGC GGATAAACCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVCSCAMC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10100688-10100808 1.5e-06 34_[+2]_78 chr3R:10265607-10265727 4.4e-06 97_[+2]_15 chr2L:5045215-5045335 4.4e-06 109_[+2]_3 chr3L:8604433-8604553 4.4e-06 104_[+2]_8 chr3R:10675257-10675377 5.9e-06 85_[+2]_27 chrX:5312122-5312242 1.2e-05 43_[+2]_69 chr2R:12403775-12403895 1.2e-05 92_[+2]_20 chr3R:24544434-24544554 1.4e-05 90_[+2]_22 chrX:20507827-20507947 2.2e-05 21_[+2]_91 chr2L:6338728-6338848 2.5e-05 57_[+2]_55 chr2R:10303707-10303827 2.8e-05 106_[+2]_6 chr2R:12636580-12636700 2.8e-05 60_[+2]_52 chrX:13288210-13288330 2.8e-05 44_[+2]_68 chr3L:2501964-2502084 3.6e-05 51_[+2]_61 chrX:11081384-11081504 3.6e-05 56_[+2]_56 chr3R:6791432-6791552 4.7e-05 81_[+2]_31 chr2R:19292138-19292258 4.7e-05 68_[+2]_44 chr3R:23763192-23763312 4.7e-05 16_[+2]_96 chr2L:5999460-5999580 6e-05 63_[+2]_49 chr3R:16222126-16222246 6e-05 97_[+2]_15 chr3R:25123357-25123477 8.2e-05 19_[+2]_93 chr3R:13964596-13964716 8.4e-05 26_[+2]_86 chr3R:29068935-29069055 0.00011 77_[+2]_35 chrX:5638648-5638768 0.00012 16_[+2]_96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVCSCAMC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CVCSCAMC width=8 seqs=24 chr3R:10100688-10100808 ( 35) CCCCCACC 1 chr3R:10265607-10265727 ( 98) CGCCCACC 1 chr2L:5045215-5045335 ( 110) CCCGCACC 1 chr3L:8604433-8604553 ( 105) CGCCCACC 1 chr3R:10675257-10675377 ( 86) CGCGCACC 1 chrX:5312122-5312242 ( 44) CCCCCAAC 1 chr2R:12403775-12403895 ( 93) CCCCCAAC 1 chr3R:24544434-24544554 ( 91) CACGCACC 1 chrX:20507827-20507947 ( 22) CCCCCAGC 1 chr2L:6338728-6338848 ( 58) CGCGCAAC 1 chr2R:10303707-10303827 ( 107) CCGCCACC 1 chr2R:12636580-12636700 ( 61) CCGCCACC 1 chrX:13288210-13288330 ( 45) CGCCCCCC 1 chr3L:2501964-2502084 ( 52) CGCCCAGC 1 chrX:11081384-11081504 ( 57) CACCCAAC 1 chr3R:6791432-6791552 ( 82) CACGCAAC 1 chr2R:19292138-19292258 ( 69) CACGCAAC 1 chr3R:23763192-23763312 ( 17) CACGCAAC 1 chr2L:5999460-5999580 ( 64) CAGCCACC 1 chr3R:16222126-16222246 ( 98) CACGCCCC 1 chr3R:25123357-25123477 ( 20) CCGGCAAC 1 chr3R:13964596-13964716 ( 27) CGCGCACG 1 chr3R:29068935-29069055 ( 78) CCCCCAAG 1 chrX:5638648-5638768 ( 17) CACCCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVCSCAMC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3 E= 9.2e+001 -1123 254 -1123 -1123 1 112 77 -1123 -1123 228 -4 -1123 -1123 176 128 -1123 -1123 254 -1123 -1123 140 -46 -1123 -1123 18 154 -45 -1123 -1123 241 -104 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVCSCAMC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 9.2e+001 0.000000 1.000000 0.000000 0.000000 0.333333 0.375000 0.291667 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.583333 0.416667 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.375000 0.500000 0.125000 0.000000 0.000000 0.916667 0.083333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVCSCAMC MEME-2 regular expression -------------------------------------------------------------------------------- C[CAG]C[CG]CA[CA]C -------------------------------------------------------------------------------- Time 13.61 secs. ******************************************************************************** ******************************************************************************** MOTIF GATGGCGC MEME-3 width = 8 sites = 7 llr = 82 E-value = 9.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GATGGCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :9:::::3 pos.-specific C :::::a:7 probability G a1:aa:a: matrix T ::a::::: bits 2.5 * **** 2.3 * **** 2.0 * **** 1.8 * **** Relative 1.5 * ****** Entropy 1.3 * ****** (16.9 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GATGGCGC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17531945-17532065 74 2.73e-06 TTAAGTTTAT GATGGCGC CACCTATAGT chr2L:7333514-7333634 101 2.73e-06 TGAGCGCTCG GATGGCGC ATGAGTGAAA chr2L:16743104-16743224 46 2.73e-06 CTAGCCAGCA GATGGCGC TGGTGAAGTA chrX:13329680-13329800 28 2.73e-06 ATAGTTGATA GATGGCGC TTTAAGCACT chr3R:10100688-10100808 63 4.14e-06 TTGGCCAGAA GGTGGCGC TCGATGCGAC chr3R:13999680-13999800 1 9.39e-06 . GATGGCGA TATGAAGTAC chrX:20507827-20507947 95 9.39e-06 GAGGAGGTGA GATGGCGA GAAAGGTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17531945-17532065 2.7e-06 73_[+3]_39 chr2L:7333514-7333634 2.7e-06 100_[+3]_12 chr2L:16743104-16743224 2.7e-06 45_[+3]_67 chrX:13329680-13329800 2.7e-06 27_[+3]_85 chr3R:10100688-10100808 4.1e-06 62_[+3]_50 chr3R:13999680-13999800 9.4e-06 [+3]_112 chrX:20507827-20507947 9.4e-06 94_[+3]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GATGGCGC width=8 seqs=7 chrX:17531945-17532065 ( 74) GATGGCGC 1 chr2L:7333514-7333634 ( 101) GATGGCGC 1 chr2L:16743104-16743224 ( 46) GATGGCGC 1 chrX:13329680-13329800 ( 28) GATGGCGC 1 chr3R:10100688-10100808 ( 63) GGTGGCGC 1 chr3R:13999680-13999800 ( 1) GATGGCGA 1 chrX:20507827-20507947 ( 95) GATGGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 9.7e+002 -945 -945 255 -945 137 -945 -26 -945 -945 -945 -945 162 -945 -945 255 -945 -945 -945 255 -945 -945 254 -945 -945 -945 -945 255 -945 -21 205 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 9.7e+002 0.000000 0.000000 1.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.285714 0.714286 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-3 regular expression -------------------------------------------------------------------------------- GATGGCG[CA] -------------------------------------------------------------------------------- Time 19.76 secs. ******************************************************************************** ******************************************************************************** MOTIF TMTCGCAG MEME-4 width = 8 sites = 14 llr = 140 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TMTCGCAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :4::::9: pos.-specific C :6:9:a:: probability G 1:11a:1a matrix T 9:9::::: bits 2.5 ** * 2.3 *** * 2.0 *** * 1.8 *** * Relative 1.5 *** * Entropy 1.3 ****** * (14.4 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TCTCGCAG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TMTCGCAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:4441007-4441127 91 5.23e-06 TGCAGGAATT TCTCGCAG TGTTTTGGCC chr3L:19216584-19216704 97 5.23e-06 AAGCTAAATT TCTCGCAG TGTAAAAAGC chrX:15591976-15592096 111 5.23e-06 TTGGCACATT TCTCGCAG TG chr3L:22277365-22277485 111 5.23e-06 AAGGAAGTGT TCTCGCAG TG chr3R:25489233-25489353 31 1.53e-05 TTTGCTGAGA TATCGCAG GCACTGGGAG chr2L:1980750-1980870 81 1.53e-05 GGTATCAAAC TATCGCAG GTGGCAAGGC chr2R:15034848-15034968 89 1.53e-05 GGGAATTATC TATCGCAG TCAAGGCGAC chr2R:9426479-9426599 6 2.35e-05 AAAGC GCTCGCAG CTTTTAGGTA chr3R:21270043-21270163 71 2.35e-05 TGCAAACAGT TCGCGCAG AAAGCAAACG chr2L:3598619-3598739 112 2.35e-05 CCCACTTTTT TCGCGCAG T chr3R:18448611-18448731 99 3.93e-05 TCCTTTTCTT GATCGCAG GATCATCAAA chr3R:31395343-31395463 100 3.93e-05 TTAAATCGCT TATCGCGG AATCCCAGTG chr2L:12721108-12721228 98 3.93e-05 TTGTTCGCCT TATCGCGG GTTCACTGTA chr3R:30195713-30195833 81 4.88e-05 CCGGCGGTCG TCTGGCAG AACATGAGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TMTCGCAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:4441007-4441127 5.2e-06 90_[+4]_22 chr3L:19216584-19216704 5.2e-06 96_[+4]_16 chrX:15591976-15592096 5.2e-06 110_[+4]_2 chr3L:22277365-22277485 5.2e-06 110_[+4]_2 chr3R:25489233-25489353 1.5e-05 30_[+4]_82 chr2L:1980750-1980870 1.5e-05 80_[+4]_32 chr2R:15034848-15034968 1.5e-05 88_[+4]_24 chr2R:9426479-9426599 2.4e-05 5_[+4]_107 chr3R:21270043-21270163 2.4e-05 70_[+4]_42 chr2L:3598619-3598739 2.4e-05 111_[+4]_1 chr3R:18448611-18448731 3.9e-05 98_[+4]_14 chr3R:31395343-31395463 3.9e-05 99_[+4]_13 chr2L:12721108-12721228 3.9e-05 97_[+4]_15 chr3R:30195713-30195833 4.9e-05 80_[+4]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TMTCGCAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TMTCGCAG width=8 seqs=14 chr2L:4441007-4441127 ( 91) TCTCGCAG 1 chr3L:19216584-19216704 ( 97) TCTCGCAG 1 chrX:15591976-15592096 ( 111) TCTCGCAG 1 chr3L:22277365-22277485 ( 111) TCTCGCAG 1 chr3R:25489233-25489353 ( 31) TATCGCAG 1 chr2L:1980750-1980870 ( 81) TATCGCAG 1 chr2R:15034848-15034968 ( 89) TATCGCAG 1 chr2R:9426479-9426599 ( 6) GCTCGCAG 1 chr3R:21270043-21270163 ( 71) TCGCGCAG 1 chr2L:3598619-3598739 ( 112) TCGCGCAG 1 chr3R:18448611-18448731 ( 99) GATCGCAG 1 chr3R:31395343-31395463 ( 100) TATCGCGG 1 chr2L:12721108-12721228 ( 98) TATCGCGG 1 chr3R:30195713-30195833 ( 81) TCTGGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TMTCGCAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 1.2e+004 -1045 -1045 -26 140 37 173 -1045 -1045 -1045 -1045 -26 140 -1045 243 -126 -1045 -1045 -1045 255 -1045 -1045 254 -1045 -1045 137 -1045 -26 -1045 -1045 -1045 255 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TMTCGCAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.2e+004 0.000000 0.000000 0.142857 0.857143 0.428571 0.571429 0.000000 0.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.928571 0.071429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TMTCGCAG MEME-4 regular expression -------------------------------------------------------------------------------- T[CA]TCGCAG -------------------------------------------------------------------------------- Time 25.89 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCTGGCG MEME-5 width = 8 sites = 2 llr = 27 E-value = 3.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCTGGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :aa:::a: probability G a:::aa:a matrix T :::a:::: bits 2.5 *** **** 2.3 *** **** 2.0 *** **** 1.8 *** **** Relative 1.5 ******** Entropy 1.3 ******** (19.4 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCTGGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTGGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:18666065-18666185 9 1.42e-06 ACTTATCC GCCTGGCG GCTAATCTGA chr3L:19914931-19915051 101 1.42e-06 GCGCGGCATA GCCTGGCG TTCGCCGCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTGGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:18666065-18666185 1.4e-06 8_[+5]_104 chr3L:19914931-19915051 1.4e-06 100_[+5]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTGGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCTGGCG width=8 seqs=2 chr2L:18666065-18666185 ( 9) GCCTGGCG 1 chr3L:19914931-19915051 ( 101) GCCTGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTGGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 3.1e+004 -765 -765 254 -765 -765 253 -765 -765 -765 253 -765 -765 -765 -765 -765 161 -765 -765 254 -765 -765 -765 254 -765 -765 253 -765 -765 -765 -765 254 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTGGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.1e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTGGCG MEME-5 regular expression -------------------------------------------------------------------------------- GCCTGGCG -------------------------------------------------------------------------------- Time 32.00 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:19140510-19140630 6.18e-01 120 chr3L:14029105-14029225 4.16e-01 120 chr3R:25648128-25648248 3.47e-02 19_[+1(1.34e-05)]_93 chr3L:11815317-11815437 5.73e-02 120 chrX:13288210-13288330 1.76e-04 44_[+2(2.80e-05)]_41_[+1(2.18e-05)]_\ 19 chr3L:19914931-19915051 3.44e-06 88_[+4(5.70e-05)]_4_[+5(1.42e-06)]_\ 2_[+1(2.54e-05)]_2 chr3R:23763192-23763312 2.62e-03 16_[+2(4.69e-05)]_62_[+1(4.41e-05)]_\ 26 chrX:7703094-7703214 1.00e+00 120 chrX:351111-351231 7.92e-01 120 chr3R:29748905-29749025 9.75e-01 120 chr2R:7474219-7474339 9.03e-01 120 chr2R:15322333-15322453 2.10e-01 120 chr2L:16869120-16869240 1.00e+00 120 chr3R:26105947-26106067 2.51e-01 120 chr3L:11336514-11336634 7.79e-02 120 chr2R:15034848-15034968 8.75e-04 88_[+4(1.53e-05)]_24 chr2R:7054318-7054438 8.53e-01 120 chr3R:7977780-7977900 6.47e-01 120 chr3L:27267168-27267288 9.44e-01 120 chr3R:13964596-13964716 1.06e-01 26_[+2(8.42e-05)]_86 chr3R:20555149-20555269 9.92e-01 120 chrX:11081384-11081504 7.71e-02 56_[+2(3.64e-05)]_56 chr3L:22277365-22277485 1.09e-02 110_[+4(5.23e-06)]_2 chrX:10362934-10363054 7.00e-01 120 chr3R:25123357-25123477 2.39e-02 19_[+2(8.20e-05)]_93 chr2R:9388613-9388733 5.92e-01 120 chr3R:6760952-6761072 8.19e-01 120 chrX:19107049-19107169 1.28e-03 102_[+1(5.69e-05)]_10 chr2R:21018389-21018509 9.62e-01 120 chrX:2011719-2011839 8.76e-01 120 chr2R:12521319-12521439 1.30e-03 34_[+3(9.58e-05)]_19_[+1(2.18e-05)]_\ 51 chr2R:10854314-10854434 8.15e-01 120 chr3L:8604433-8604553 4.95e-04 104_[+2(4.41e-06)]_8 chr3L:16232021-16232141 6.79e-01 120 chr3R:21373535-21373655 6.43e-04 58_[+1(4.16e-06)]_54 chr2R:24293570-24293690 2.86e-02 120 chr2L:1980750-1980870 1.25e-06 36_[+1(2.54e-05)]_36_[+4(1.53e-05)]_\ 32 chrX:6524373-6524493 2.87e-04 106_[+1(2.18e-05)]_6 chr3R:9039636-9039756 6.32e-01 120 chr2L:523712-523832 1.71e-02 120 chr2R:14644935-14645055 1.00e+00 120 chrX:8542150-8542270 9.72e-01 120 chr2R:19292138-19292258 5.89e-03 68_[+2(4.69e-05)]_44 chr3R:26280480-26280600 7.39e-01 120 chr3R:22878561-22878681 8.58e-01 120 chr3R:24544434-24544554 7.94e-03 25_[+1(4.41e-05)]_57_[+2(1.44e-05)]_\ 22 chr3R:10688982-10689102 8.87e-01 120 chr3R:22754357-22754477 1.76e-01 120 chr2R:12403775-12403895 1.08e-01 92_[+2(1.15e-05)]_20 chrX:20257375-20257495 1.31e-02 42_[+1(2.18e-05)]_70 chr3R:29089807-29089927 7.14e-01 120 chr3R:10675257-10675377 8.02e-03 85_[+2(5.86e-06)]_27 chr2R:21178806-21178926 3.00e-03 52_[+3(9.58e-05)]_60 chrX:15591976-15592096 1.27e-03 110_[+4(5.23e-06)]_2 chr2R:7916702-7916822 3.04e-01 120 chr3R:30325582-30325702 1.00e+00 120 chrX:2136513-2136633 2.22e-01 120 chrX:13329680-13329800 1.65e-05 27_[+3(2.73e-06)]_74_[+1(4.41e-05)]_\ 3 chr2R:14971280-14971400 6.68e-01 120 chr3R:29859917-29860037 8.47e-01 120 chr3L:1035112-1035232 1.57e-01 120 chr3L:8629076-8629196 9.99e-01 120 chr2R:11219237-11219357 4.05e-01 120 chr3R:22023366-22023486 9.59e-01 120 chr2R:12636580-12636700 1.97e-04 60_[+2(2.80e-05)]_2_[+1(5.41e-05)]_\ 42 chr3R:14875604-14875724 7.96e-01 120 chr3L:19216584-19216704 8.10e-02 96_[+4(5.23e-06)]_16 chrX:20631254-20631374 9.37e-01 120 chr3R:29068935-29069055 3.55e-01 120 chr3R:15250626-15250746 9.99e-01 120 chr2R:14305308-14305428 7.54e-01 120 chr3R:21156261-21156381 2.09e-01 120 chr2L:16743104-16743224 4.65e-05 45_[+3(2.73e-06)]_18_[+1(1.34e-05)]_\ 41 chr3R:27153462-27153582 6.82e-01 120 chr3L:13923432-13923552 6.57e-01 120 chr2L:10522634-10522754 9.91e-01 120 chrX:2166243-2166363 1.14e-02 15_[+1(8.11e-05)]_97 chr2L:4459718-4459838 1.00e+00 120 chr3R:26444278-26444398 9.99e-01 120 chr3L:4379051-4379171 8.06e-01 120 chr3L:13905695-13905815 9.99e-01 120 chr2R:16170812-16170932 5.53e-01 120 chrX:20507827-20507947 2.31e-05 21_[+2(2.22e-05)]_65_[+3(9.39e-06)]_\ 18 chrX:12470701-12470821 3.36e-01 120 chr2L:15039373-15039493 8.48e-03 120 chr2L:8528483-8528603 2.16e-01 120 chrX:19166354-19166474 1.60e-02 120 chrX:16854848-16854968 9.12e-01 120 chr3R:18366442-18366562 6.30e-01 120 chr3L:9614088-9614208 7.26e-02 120 chr2R:5128336-5128456 1.00e+00 120 chr3R:23028634-23028754 3.83e-02 57_[+1(4.41e-05)]_55 chr2L:20097244-20097364 9.58e-01 120 chrX:5312122-5312242 5.66e-03 43_[+2(1.15e-05)]_69 chr3R:6791432-6791552 8.67e-02 81_[+2(4.69e-05)]_31 chr3R:21187125-21187245 7.90e-01 120 chrX:9652163-9652283 9.44e-01 120 chr2L:11528268-11528388 3.44e-01 120 chr3R:10100688-10100808 1.31e-05 34_[+2(1.47e-06)]_20_[+3(4.14e-06)]_\ 50 chr2L:10698118-10698238 8.37e-01 120 chr2R:19127975-19128095 7.58e-01 120 chr3R:28676970-28677090 5.46e-01 120 chr3R:10884175-10884295 4.60e-01 120 chr2R:21017607-21017727 9.90e-01 120 chr3R:26121134-26121254 6.36e-01 120 chrX:4262796-4262916 2.46e-01 120 chr2L:3598619-3598739 2.39e-02 111_[+4(2.35e-05)]_1 chr2R:15114530-15114650 7.25e-01 120 chr2L:10856731-10856851 9.98e-01 120 chr2L:15254375-15254495 1.00e+00 120 chr2R:10303707-10303827 2.85e-03 81_[+1(6.71e-05)]_17_[+2(2.80e-05)]_\ 6 chr2R:4516465-4516585 8.28e-01 120 chrX:17738005-17738125 1.85e-02 50_[+1(6.71e-05)]_62 chr2L:12721108-12721228 1.08e-01 97_[+4(3.93e-05)]_15 chr3R:30305019-30305139 9.37e-01 120 chr3R:26117805-26117925 8.74e-01 120 chr2R:5122313-5122433 9.74e-01 120 chrX:1512881-1513001 2.33e-02 120 chr3R:29799540-29799660 2.49e-01 120 chr3L:16710413-16710533 1.00e+00 120 chr3L:18791575-18791695 2.94e-01 120 chr3R:26052491-26052611 9.54e-01 120 chrX:22837505-22837625 2.97e-01 120 chrX:12925974-12926094 3.89e-03 107_[+1(2.18e-05)]_5 chr2R:7254437-7254557 1.55e-01 120 chr3R:22625884-22626004 6.87e-01 120 chr2R:13429196-13429316 7.08e-01 120 chr2R:24657138-24657258 9.73e-01 120 chr3L:5185265-5185385 1.24e-01 120 chr3L:8024968-8025088 5.48e-02 120 chr2L:22536653-22536773 1.19e-01 120 chr3R:26172156-26172276 3.98e-01 120 chr3R:19627918-19628038 9.97e-01 120 chr2L:6874704-6874824 9.99e-01 120 chrX:13391263-13391383 4.20e-01 120 chr3R:26654724-26654844 8.62e-02 120 chr2R:7052444-7052564 9.96e-01 120 chr3L:15592629-15592749 1.00e+00 120 chr2R:18528524-18528644 9.84e-01 120 chr3L:15094865-15094985 9.99e-01 120 chr2R:20671055-20671175 1.14e-02 120 chr3R:20989737-20989857 9.99e-01 120 chr2R:12468394-12468514 5.30e-01 120 chr2R:11921078-11921198 1.00e+00 120 chr2R:11204291-11204411 2.68e-02 120 chr3R:21270043-21270163 1.57e-03 70_[+4(2.35e-05)]_42 chr2R:18829753-18829873 2.57e-01 120 chr3R:30195713-30195833 4.46e-04 80_[+4(4.88e-05)]_32 chr2L:4441007-4441127 1.93e-04 77_[+1(3.24e-05)]_5_[+4(5.23e-06)]_\ 22 chr2R:23383443-23383563 7.57e-01 120 chr3R:18906426-18906546 2.66e-01 120 chr3R:5686522-5686642 9.97e-01 120 chr2R:18514018-18514138 7.66e-04 61_[+4(9.73e-05)]_42_[+4(7.59e-05)]_\ 1 chr2L:12467867-12467987 7.88e-01 120 chrX:4010984-4011104 8.65e-01 120 chr3R:30532133-30532253 6.73e-01 120 chr3L:9127449-9127569 6.69e-01 120 chrX:5638648-5638768 4.01e-02 120 chr3L:5988862-5988982 5.51e-01 120 chr3R:16222126-16222246 2.88e-02 97_[+2(5.99e-05)]_15 chr2R:12652601-12652721 9.82e-01 120 chrX:14215202-14215322 4.61e-01 120 chr3R:9791308-9791428 9.88e-01 120 chr3L:8063568-8063688 3.22e-01 120 chr3R:23347009-23347129 1.39e-01 120 chr3R:20312958-20313078 3.19e-01 120 chrX:20394220-20394340 7.62e-01 120 chrX:10488049-10488169 9.32e-01 120 chr2R:8914084-8914204 2.70e-03 13_[+1(2.18e-05)]_99 chr3R:24829985-24830105 9.98e-01 120 chr2L:16352663-16352783 6.26e-01 120 chr2L:13398882-13399002 1.35e-01 120 chrX:5892185-5892305 9.63e-01 120 chr2R:7466727-7466847 4.36e-02 120 chr2R:14577729-14577849 1.40e-02 120 chr2L:7333514-7333634 2.53e-05 100_[+3(2.73e-06)]_12 chr3L:13911776-13911896 6.52e-01 120 chr2L:19517426-19517546 9.94e-01 120 chr3R:30797463-30797583 1.00e+00 120 chr3L:13450293-13450413 1.91e-01 120 chr2R:12605698-12605818 9.97e-01 120 chr2L:18666065-18666185 3.53e-05 8_[+5(1.42e-06)]_22_[+1(8.11e-05)]_\ 74 chrX:16944109-16944229 1.00e+00 120 chr3L:17653575-17653695 3.25e-01 120 chr3R:14347429-14347549 8.99e-01 120 chr3R:23333825-23333945 1.00e+00 120 chrX:6856768-6856888 3.22e-01 120 chr2L:6830505-6830625 9.31e-01 120 chr3R:15837162-15837282 1.00e+00 120 chr3R:8960476-8960596 9.37e-01 120 chr2L:6338728-6338848 1.57e-03 57_[+2(2.50e-05)]_55 chr3L:21640853-21640973 4.93e-03 20_[+1(2.18e-05)]_92 chrX:15615589-15615709 9.91e-01 120 chrX:1322360-1322480 2.23e-04 72_[+1(2.18e-05)]_40 chrX:3431783-3431903 6.82e-01 120 chr2L:21787100-21787220 1.42e-01 120 chrX:8777215-8777335 8.54e-01 120 chr3L:13479861-13479981 3.44e-02 120 chr2R:15931969-15932089 2.88e-03 35_[+5(5.23e-05)]_77 chrX:14765995-14766115 1.00e+00 120 chr3L:20395336-20395456 4.60e-01 120 chr3R:13999680-13999800 1.24e-02 [+3(9.39e-06)]_112 chr2L:5045215-5045335 7.76e-05 64_[+1(6.71e-05)]_37_[+2(4.41e-06)]_\ 3 chr2R:9426479-9426599 1.34e-03 5_[+4(2.35e-05)]_107 chr2L:6473261-6473381 5.05e-01 120 chr2R:10142319-10142439 1.77e-01 120 chr2L:7932467-7932587 1.00e+00 120 chr2L:5543201-5543321 1.84e-01 120 chrX:7728423-7728543 9.86e-01 120 chr3R:12722673-12722793 1.00e+00 120 chr3R:15145535-15145655 9.87e-01 120 chr3R:16794351-16794471 9.01e-02 109_[+5(5.23e-05)]_3 chrX:9641454-9641574 5.10e-01 120 chr3L:14325454-14325574 3.52e-01 120 chr2R:9286626-9286746 9.87e-01 120 chr3L:8692281-8692401 9.74e-01 120 chr2L:7961274-7961394 5.86e-01 120 chrX:9349390-9349510 4.40e-01 120 chr2L:10442339-10442459 9.15e-01 120 chr3R:31395343-31395463 1.66e-03 9_[+1(5.59e-06)]_82_[+4(3.93e-05)]_\ 13 chr2L:1628235-1628355 8.68e-01 120 chr3L:11822495-11822615 3.74e-01 120 chrX:4906728-4906848 1.00e+00 120 chr3R:12016923-12017043 2.82e-01 120 chr3L:21954567-21954687 4.86e-01 120 chr3L:20634570-20634690 2.19e-01 120 chr3R:25489233-25489353 1.20e-02 30_[+4(1.53e-05)]_82 chr3L:10843532-10843652 7.78e-01 120 chr3L:11350897-11351017 9.57e-01 120 chr3L:18786878-18786998 1.00e+00 120 chr3R:24574156-24574276 3.37e-01 13_[+1(8.11e-05)]_99 chr2L:5999460-5999580 2.26e-02 63_[+2(5.99e-05)]_49 chr2R:18326644-18326764 9.68e-01 120 chr3R:9053862-9053982 1.86e-01 120 chr3R:10265607-10265727 2.08e-02 97_[+2(4.41e-06)]_15 chr3R:19831103-19831223 9.88e-01 120 chr2L:21624052-21624172 6.46e-02 120 chr3R:28887982-28888102 3.35e-01 120 chr3R:27152482-27152602 1.25e-01 [+1(3.24e-05)]_112 chr3R:30191644-30191764 7.73e-01 120 chr3R:18795392-18795512 1.82e-01 120 chrX:19663378-19663498 9.08e-01 120 chr2R:7031152-7031272 2.35e-02 120 chr3R:27987449-27987569 1.00e+00 120 chr3L:2501964-2502084 2.00e-02 51_[+2(3.64e-05)]_61 chr3R:23332697-23332817 7.18e-01 120 chr2R:12678164-12678284 3.04e-01 120 chr3R:18448611-18448731 1.94e-01 98_[+4(3.93e-05)]_14 chrX:17531945-17532065 1.03e-03 73_[+3(2.73e-06)]_39 chr2R:24389175-24389295 9.72e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************