******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/bab2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:1167040-1167160 1.0000 120 chrX:19146443-19146563 1.0000 120 chr3L:1139496-1139616 1.0000 120 chr3L:2393215-2393335 1.0000 120 chrX:8493612-8493732 1.0000 120 chr3L:5630254-5630374 1.0000 120 chr3L:648187-648307 1.0000 120 chr3R:19011032-19011152 1.0000 120 chr2L:1362374-1362494 1.0000 120 chr2L:9775348-9775468 1.0000 120 chr2R:22540021-22540141 1.0000 120 chrX:8677577-8677697 1.0000 120 chrX:16105819-16105939 1.0000 120 chrX:8671512-8671632 1.0000 120 chr2L:19949747-19949867 1.0000 120 chr2R:23258761-23258881 1.0000 120 chr3R:8920214-8920334 1.0000 120 chr3L:21205112-21205232 1.0000 120 chr3R:31369125-31369245 1.0000 120 chr2L:10497560-10497680 1.0000 120 chrX:4498433-4498553 1.0000 120 chr2L:16816082-16816202 1.0000 120 chr2L:8229309-8229429 1.0000 120 chrX:12221679-12221799 1.0000 120 chr3R:16704400-16704520 1.0000 120 chr3L:648387-648507 1.0000 120 chrX:7703101-7703221 1.0000 120 chr3R:15644868-15644988 1.0000 120 chr3R:14356771-14356891 1.0000 120 chr3L:2894833-2894953 1.0000 120 chrX:2294672-2294792 1.0000 120 chrX:6091013-6091133 1.0000 120 chr3L:10362690-10362810 1.0000 120 chr2R:14488415-14488535 1.0000 120 chrX:16650542-16650662 1.0000 120 chr2R:11044551-11044671 1.0000 120 chr2L:20327532-20327652 1.0000 120 chrX:6179545-6179665 1.0000 120 chr2L:11331789-11331909 1.0000 120 chr3L:2572141-2572261 1.0000 120 chr2L:12509606-12509726 1.0000 120 chrX:18533337-18533457 1.0000 120 chr3L:20518285-20518405 1.0000 120 chrX:9042763-9042883 1.0000 120 chrX:8884082-8884202 1.0000 120 chr3L:8853062-8853182 1.0000 120 chr3R:10024181-10024301 1.0000 120 chrX:20506051-20506171 1.0000 120 chr3L:11408859-11408979 1.0000 120 chr3R:9938631-9938751 1.0000 120 chrX:3403508-3403628 1.0000 120 chr2R:21514498-21514618 1.0000 120 chrX:10587662-10587782 1.0000 120 chr3L:9972615-9972735 1.0000 120 chrX:10184773-10184893 1.0000 120 chr3R:29089837-29089957 1.0000 120 chrX:3538929-3539049 1.0000 120 chr2L:15254417-15254537 1.0000 120 chrX:8542854-8542974 1.0000 120 chr3L:10741313-10741433 1.0000 120 chr2L:19252513-19252633 1.0000 120 chr3L:1195949-1196069 1.0000 120 chr3L:1578652-1578772 1.0000 120 chrX:3714148-3714268 1.0000 120 chr2R:24411769-24411889 1.0000 120 chr2R:21202855-21202975 1.0000 120 chrX:10387769-10387889 1.0000 120 chr2R:21470628-21470748 1.0000 120 chr2R:18325069-18325189 1.0000 120 chr2R:20906672-20906792 1.0000 120 chrX:10473712-10473832 1.0000 120 chrX:15027045-15027165 1.0000 120 chr2R:21910013-21910133 1.0000 120 chr3L:745657-745777 1.0000 120 chr3L:10858881-10859001 1.0000 120 chr2R:22387669-22387789 1.0000 120 chrX:362290-362410 1.0000 120 chr3L:13262373-13262493 1.0000 120 chr2L:493418-493538 1.0000 120 chr2R:11792793-11792913 1.0000 120 chr2L:7985027-7985147 1.0000 120 chr2R:13482300-13482420 1.0000 120 chrX:618766-618886 1.0000 120 chr3R:13717000-13717120 1.0000 120 chrX:4609889-4610009 1.0000 120 chr2R:7077045-7077165 1.0000 120 chr2L:6339697-6339817 1.0000 120 chr3L:3059377-3059497 1.0000 120 chr3R:29005037-29005157 1.0000 120 chr2L:21619178-21619298 1.0000 120 chr2R:11809511-11809631 1.0000 120 chrX:12463394-12463514 1.0000 120 chr3R:29757331-29757451 1.0000 120 chrX:5084844-5084964 1.0000 120 chr2R:19311013-19311133 1.0000 120 chr2L:12463135-12463255 1.0000 120 chr2L:7616966-7617086 1.0000 120 chrX:16350182-16350302 1.0000 120 chr2R:9388682-9388802 1.0000 120 chr3L:3080568-3080688 1.0000 120 chr3R:29699385-29699505 1.0000 120 chrX:18239435-18239555 1.0000 120 chrX:13630388-13630508 1.0000 120 chrX:16103554-16103674 1.0000 120 chr2R:10160293-10160413 1.0000 120 chr3R:29083841-29083961 1.0000 120 chr3R:31395340-31395460 1.0000 120 chr3R:20948107-20948227 1.0000 120 chrX:17696850-17696970 1.0000 120 chr3R:26436710-26436830 1.0000 120 chr2L:220738-220858 1.0000 120 chr2L:18566707-18566827 1.0000 120 chr3L:5789873-5789993 1.0000 120 chr3R:22121372-22121492 1.0000 120 chr3R:29265245-29265365 1.0000 120 chr3R:27289804-27289924 1.0000 120 chr3L:8029508-8029628 1.0000 120 chrX:8491885-8492005 1.0000 120 chrX:13333045-13333165 1.0000 120 chr3R:11735470-11735590 1.0000 120 chr3R:6818696-6818816 1.0000 120 chr3R:29068909-29069029 1.0000 120 chrX:13253191-13253311 1.0000 120 chr2L:9494883-9495003 1.0000 120 chr2L:1158254-1158374 1.0000 120 chr2R:12475937-12476057 1.0000 120 chrX:3068411-3068531 1.0000 120 chr2L:3587396-3587516 1.0000 120 chr2L:1123495-1123615 1.0000 120 chr3L:15999747-15999867 1.0000 120 chr3R:10140487-10140607 1.0000 120 chr3L:9028172-9028292 1.0000 120 chr3R:4846904-4847024 1.0000 120 chr3L:2152153-2152273 1.0000 120 chrX:18404927-18405047 1.0000 120 chr2L:14376914-14377034 1.0000 120 chr3R:5686484-5686604 1.0000 120 chr3R:16069415-16069535 1.0000 120 chr3L:5988870-5988990 1.0000 120 chr2R:11541220-11541340 1.0000 120 chrX:2136464-2136584 1.0000 120 chr3L:765911-766031 1.0000 120 chr3R:10391032-10391152 1.0000 120 chr3R:14657179-14657299 1.0000 120 chr2L:8982802-8982922 1.0000 120 chr2R:19127981-19128101 1.0000 120 chr2R:11178566-11178686 1.0000 120 chr3R:30501383-30501503 1.0000 120 chr2L:3003564-3003684 1.0000 120 chrX:2166270-2166390 1.0000 120 chr3R:27440761-27440881 1.0000 120 chr3R:26888516-26888636 1.0000 120 chr2R:11628129-11628249 1.0000 120 chr2R:17698937-17699057 1.0000 120 chr3L:627891-628011 1.0000 120 chr2R:13055010-13055130 1.0000 120 chr2L:11417638-11417758 1.0000 120 chr2L:7339691-7339811 1.0000 120 chr3L:21007872-21007992 1.0000 120 chrX:5883532-5883652 1.0000 120 chr2R:17161040-17161160 1.0000 120 chrX:16386010-16386130 1.0000 120 chr3L:10745776-10745896 1.0000 120 chr3R:12997915-12998035 1.0000 120 chr2L:7494348-7494468 1.0000 120 chr3R:27557138-27557258 1.0000 120 chr3L:8689822-8689942 1.0000 120 chrX:10326012-10326132 1.0000 120 chr3R:25004898-25005018 1.0000 120 chr2L:14359110-14359230 1.0000 120 chr3R:18242110-18242230 1.0000 120 chrX:3188540-3188660 1.0000 120 chr3R:16655817-16655937 1.0000 120 chrX:7571372-7571492 1.0000 120 chr3R:26937606-26937726 1.0000 120 chr3L:10899337-10899457 1.0000 120 chr2R:10103763-10103883 1.0000 120 chrX:19008989-19009109 1.0000 120 chr3R:21151524-21151644 1.0000 120 chr3R:18670583-18670703 1.0000 120 chr2L:20911564-20911684 1.0000 120 chr3L:16571472-16571592 1.0000 120 chrX:19308131-19308251 1.0000 120 chr2L:7871925-7872045 1.0000 120 chr2L:8573024-8573144 1.0000 120 chr3R:9344847-9344967 1.0000 120 chr3L:6982051-6982171 1.0000 120 chr3L:4292219-4292339 1.0000 120 chr2R:23868637-23868757 1.0000 120 chr2L:8692541-8692661 1.0000 120 chr3L:20630802-20630922 1.0000 120 chr3R:14470687-14470807 1.0000 120 chrX:17176734-17176854 1.0000 120 chr3R:22664408-22664528 1.0000 120 chr2L:1150708-1150828 1.0000 120 chrX:6375767-6375887 1.0000 120 chr2L:7239477-7239597 1.0000 120 chr3R:18215510-18215630 1.0000 120 chrX:7015112-7015232 1.0000 120 chrX:14602707-14602827 1.0000 120 chr3R:23028639-23028759 1.0000 120 chr2R:21183136-21183256 1.0000 120 chr3R:30413951-30414071 1.0000 120 chr2R:9006913-9007033 1.0000 120 chr3R:30305038-30305158 1.0000 120 chr2R:11738673-11738793 1.0000 120 chr3L:20944327-20944447 1.0000 120 chr2L:8488879-8488999 1.0000 120 chr2L:6700751-6700871 1.0000 120 chr3L:3305591-3305711 1.0000 120 chr2L:18136711-18136831 1.0000 120 chrX:13137176-13137296 1.0000 120 chr2L:10856577-10856697 1.0000 120 chr2R:9440363-9440483 1.0000 120 chr3L:19575774-19575894 1.0000 120 chrX:10582216-10582336 1.0000 120 chr2R:25085526-25085646 1.0000 120 chrX:9137316-9137436 1.0000 120 chr3R:23176878-23176998 1.0000 120 chrX:20394216-20394336 1.0000 120 chr2R:16571763-16571883 1.0000 120 chr3R:26172155-26172275 1.0000 120 chr3L:2489588-2489708 1.0000 120 chr3R:10411835-10411955 1.0000 120 chr2L:20881504-20881624 1.0000 120 chr3R:20835026-20835146 1.0000 120 chr2R:22688643-22688763 1.0000 120 chr3L:16386033-16386153 1.0000 120 chr2R:7699132-7699252 1.0000 120 chr3L:20194824-20194944 1.0000 120 chr3L:11403586-11403706 1.0000 120 chr3R:16006076-16006196 1.0000 120 chr3L:15235335-15235455 1.0000 120 chr2L:19159381-19159501 1.0000 120 chr2L:7494548-7494668 1.0000 120 chr2R:23652344-23652464 1.0000 120 chr2L:14519451-14519571 1.0000 120 chr2L:5543156-5543276 1.0000 120 chr3L:1376127-1376247 1.0000 120 chr2L:11203733-11203853 1.0000 120 chr3R:20542397-20542517 1.0000 120 chr3L:8526158-8526278 1.0000 120 chr3L:8751391-8751511 1.0000 120 chr3R:4387566-4387686 1.0000 120 chr2R:21049345-21049465 1.0000 120 chr3R:19848006-19848126 1.0000 120 chrX:3357767-3357887 1.0000 120 chr3L:361347-361467 1.0000 120 chr3L:10845213-10845333 1.0000 120 chr3L:7861153-7861273 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_bab2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/bab2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.325 C 0.182 G 0.177 T 0.316 Background letter frequencies (from file dataset with add-one prior applied): A 0.325 C 0.182 G 0.177 T 0.316 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCKGSTGS MEME-1 width = 8 sites = 30 llr = 269 E-value = 2.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCKGSTGS MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::2:: pos.-specific C :72:6::6 probability G a:4a43a4 matrix T :34::6:: bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * * * Relative 1.5 * ** ** Entropy 1.2 ** ** ** (12.9 bits) 1.0 ** ** ** 0.7 ** ** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCTGC consensus TG GG G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGSTGS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:11735470-11735590 52 1.87e-06 TATGGGACGG GCGGCTGC ACAATGACGG chr2L:18136711-18136831 2 2.92e-06 A GCGGCGGC AAATATTCGT chr2R:14488415-14488535 44 2.92e-06 TGTCAAATGT GCGGCGGC CACAAAGATT chr3R:22664408-22664528 70 1.09e-05 ACATTCGATG GCTGCTGC TTTGATTTTA chr3L:8689822-8689942 85 1.09e-05 aaacaaacaa GCTGCTGC TTCTAGTTAT chr2R:11628129-11628249 103 1.09e-05 CGCCAGGGGC GCTGCTGC ACACAAAATA chr3L:10858881-10859001 7 1.09e-05 TCCACA GCTGCTGC TGTCGCTTCT chrX:6091013-6091133 54 1.09e-05 GTATTTCTAA GCGGGTGC CTACTGTGGG chr2L:7494548-7494668 92 1.57e-05 AAATGTAGAA GCTGCGGC GGAATTTACA chr3R:16069415-16069535 18 1.57e-05 gcggagcgga gcgggggc ggtacagcgg chr3R:16006076-16006196 64 2.07e-05 TTTAATGTTT GCTGCTGG TAAACAAGGC chrX:18239435-18239555 6 2.07e-05 CTTTT GCGGGTGG CTGAGAGGCT chr3L:10899337-10899457 95 2.97e-05 TTACATAATA GCCGCTGG AGGGCGCTCA chr3L:8853062-8853182 94 2.97e-05 CAATCGCGGA GCGGGGGG AATCAGGTGG chr3L:11403586-11403706 58 3.96e-05 TGTATATAAG GCTGGTGG CATCTTTGGC chr3L:20944327-20944447 63 3.96e-05 AAACAAATGA GCGGCAGC AGGCAGAATA chr3L:10741313-10741433 42 4.74e-05 GTTGTTGCAA GCCGGTGG TTGGCCTGTG chrX:8491885-8492005 101 5.11e-05 GGTGCCCACA GTGGCGGC GAGAAAAATG chr3L:1195949-1196069 58 5.53e-05 GAAATCCCCA GCCGGGGG AAATCCCCAT chr3R:8920214-8920334 67 6.06e-05 TTTCTTGTGA GCTGCAGC CAAAAAACAT chr3R:20835026-20835146 76 7.13e-05 GCTTTTTGTT GTTGCTGC TGTGTGGAAG chr3R:29083841-29083961 40 7.13e-05 GTTGTTTTTC GTGGGTGC ATCTGTGCAT chr3L:3305591-3305711 24 8.68e-05 ACAGCTCGTC GTCGCTGC TCTGATTTGT chrX:2136464-2136584 31 8.68e-05 CTCCCCGCTG GCTGCAGG CACTTTTCTT chr2L:14359110-14359230 3 9.55e-05 TT GTTGCTGG TTGTCTAATT chrX:4609889-4610009 95 1.16e-04 TGTCTGTGTT GTCGCTGG GAAAACAACA chrX:13137176-13137296 61 1.30e-04 TATGGGTTAT GTTGGGGC GAAAGCGAAA chr2R:7077045-7077165 106 1.30e-04 GTATCAGATA GTCGGTGC ACTTGAC chrX:2294672-2294792 96 1.30e-04 GTTGTGAATG GCTGGAGG GGTCGAGTGC chr3R:19848006-19848126 98 1.52e-04 GTCGACTTGA GTGGCAGG CTGATAAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGSTGS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:11735470-11735590 1.9e-06 51_[+1]_61 chr2L:18136711-18136831 2.9e-06 1_[+1]_111 chr2R:14488415-14488535 2.9e-06 43_[+1]_69 chr3R:22664408-22664528 1.1e-05 69_[+1]_43 chr3L:8689822-8689942 1.1e-05 84_[+1]_28 chr2R:11628129-11628249 1.1e-05 102_[+1]_10 chr3L:10858881-10859001 1.1e-05 6_[+1]_106 chrX:6091013-6091133 1.1e-05 53_[+1]_59 chr2L:7494548-7494668 1.6e-05 91_[+1]_21 chr3R:16069415-16069535 1.6e-05 17_[+1]_95 chr3R:16006076-16006196 2.1e-05 63_[+1]_49 chrX:18239435-18239555 2.1e-05 5_[+1]_107 chr3L:10899337-10899457 3e-05 94_[+1]_18 chr3L:8853062-8853182 3e-05 93_[+1]_19 chr3L:11403586-11403706 4e-05 57_[+1]_55 chr3L:20944327-20944447 4e-05 62_[+1]_50 chr3L:10741313-10741433 4.7e-05 41_[+1]_71 chrX:8491885-8492005 5.1e-05 100_[+1]_12 chr3L:1195949-1196069 5.5e-05 57_[+1]_55 chr3R:8920214-8920334 6.1e-05 66_[+1]_46 chr3R:20835026-20835146 7.1e-05 75_[+1]_37 chr3R:29083841-29083961 7.1e-05 39_[+1]_73 chr3L:3305591-3305711 8.7e-05 23_[+1]_89 chrX:2136464-2136584 8.7e-05 30_[+1]_82 chr2L:14359110-14359230 9.6e-05 2_[+1]_110 chrX:4609889-4610009 0.00012 94_[+1]_18 chrX:13137176-13137296 0.00013 60_[+1]_52 chr2R:7077045-7077165 0.00013 105_[+1]_7 chrX:2294672-2294792 0.00013 95_[+1]_17 chr3R:19848006-19848126 0.00015 97_[+1]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGSTGS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCKGSTGS width=8 seqs=30 chr3R:11735470-11735590 ( 52) GCGGCTGC 1 chr2L:18136711-18136831 ( 2) GCGGCGGC 1 chr2R:14488415-14488535 ( 44) GCGGCGGC 1 chr3R:22664408-22664528 ( 70) GCTGCTGC 1 chr3L:8689822-8689942 ( 85) GCTGCTGC 1 chr2R:11628129-11628249 ( 103) GCTGCTGC 1 chr3L:10858881-10859001 ( 7) GCTGCTGC 1 chrX:6091013-6091133 ( 54) GCGGGTGC 1 chr2L:7494548-7494668 ( 92) GCTGCGGC 1 chr3R:16069415-16069535 ( 18) GCGGGGGC 1 chr3R:16006076-16006196 ( 64) GCTGCTGG 1 chrX:18239435-18239555 ( 6) GCGGGTGG 1 chr3L:10899337-10899457 ( 95) GCCGCTGG 1 chr3L:8853062-8853182 ( 94) GCGGGGGG 1 chr3L:11403586-11403706 ( 58) GCTGGTGG 1 chr3L:20944327-20944447 ( 63) GCGGCAGC 1 chr3L:10741313-10741433 ( 42) GCCGGTGG 1 chrX:8491885-8492005 ( 101) GTGGCGGC 1 chr3L:1195949-1196069 ( 58) GCCGGGGG 1 chr3R:8920214-8920334 ( 67) GCTGCAGC 1 chr3R:20835026-20835146 ( 76) GTTGCTGC 1 chr3R:29083841-29083961 ( 40) GTGGGTGC 1 chr3L:3305591-3305711 ( 24) GTCGCTGC 1 chrX:2136464-2136584 ( 31) GCTGCAGG 1 chr2L:14359110-14359230 ( 3) GTTGCTGG 1 chrX:4609889-4610009 ( 95) GTCGCTGG 1 chrX:13137176-13137296 ( 61) GTTGGGGC 1 chr2R:7077045-7077165 ( 106) GTCGGTGC 1 chrX:2294672-2294792 ( 96) GCTGGAGG 1 chr3R:19848006-19848126 ( 98) GTGGCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGSTGS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 2.0e-001 -1155 -1155 250 -1155 -1155 195 -1155 -8 -1155 14 105 45 -1155 -1155 250 -1155 -1155 180 105 -1155 -96 -1155 59 84 -1155 -1155 250 -1155 -1155 172 118 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGSTGS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 2.0e-001 0.000000 0.000000 1.000000 0.000000 0.000000 0.700000 0.000000 0.300000 0.000000 0.200000 0.366667 0.433333 0.000000 0.000000 1.000000 0.000000 0.000000 0.633333 0.366667 0.000000 0.166667 0.000000 0.266667 0.566667 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.400000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGSTGS MEME-1 regular expression -------------------------------------------------------------------------------- G[CT][TGC]G[CG][TG]G[CG] -------------------------------------------------------------------------------- Time 7.99 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCCRCC MEME-2 width = 8 sites = 16 llr = 159 E-value = 4.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCRCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::2::4:: pos.-specific C 1a:a9289 probability G 9:7::4:: matrix T ::1:1:31 bits 2.5 * * 2.2 ** * 2.0 ** ** * 1.7 ** ** * Relative 1.5 ** ** ** Entropy 1.2 ** ** ** (14.3 bits) 1.0 ***** ** 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCCACC consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCRCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19308131-19308251 38 1.11e-06 ATTTGTTGTT GCGCCGCC TTGCCGCGTT chr2R:23652344-23652464 82 3.14e-06 AATAGGAACA GCGCCACC TGCTTGCGAA chr3R:20948107-20948227 75 3.14e-06 TGCTTATACA GCGCCACC TATGTTTGGA chr2L:16816082-16816202 54 3.14e-06 TCAGTCGATT GCGCCACC TTGTGCGCGA chr3L:2572141-2572261 69 8.24e-06 TCTGTGCCGA GCACCGCC TAACGAGGGC chr2R:25085526-25085646 47 1.18e-05 AAAGTTGAGT GCGCCATC TTTTGCTTGA chrX:16105819-16105939 45 1.18e-05 AATATGTGAA GCGCCATC CAGCGGATAG chr2L:1362374-1362494 33 1.18e-05 TCCGTTTGTG GCGCCATC TCTTCGCACT chr3L:10899337-10899457 45 1.95e-05 TGTTGTAGTG GCGCCCTC TTTTGTTTTT chr3L:1139496-1139616 4 1.95e-05 TTG GCTCCGCC ACACTGGCAG chr2R:12475937-12476057 64 2.15e-05 AGCTCCACTC GCACCCCC CCGATTCATT chr3R:29068909-29069029 101 2.15e-05 TCATTTAAGT GCACCCCC AAGCATCATA chr2L:20327532-20327652 59 2.52e-05 GCCTGAGGCC GCTCCACC TCCTCCTCGT chr2R:11628129-11628249 89 2.63e-05 GTAACGAAAA CCGCCGCC AGGGGCGCTG chr3R:10391032-10391152 11 3.43e-05 TTTGCATTAC GCGCTGCC ATCTTAATCA chr3R:11735470-11735590 104 3.43e-05 TAAATTGGAT GCGCCGCT CTCGCCACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCRCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19308131-19308251 1.1e-06 37_[+2]_75 chr2R:23652344-23652464 3.1e-06 81_[+2]_31 chr3R:20948107-20948227 3.1e-06 74_[+2]_38 chr2L:16816082-16816202 3.1e-06 53_[+2]_59 chr3L:2572141-2572261 8.2e-06 68_[+2]_44 chr2R:25085526-25085646 1.2e-05 46_[+2]_66 chrX:16105819-16105939 1.2e-05 44_[+2]_68 chr2L:1362374-1362494 1.2e-05 32_[+2]_80 chr3L:10899337-10899457 1.9e-05 44_[+2]_68 chr3L:1139496-1139616 1.9e-05 3_[+2]_109 chr2R:12475937-12476057 2.2e-05 63_[+2]_49 chr3R:29068909-29069029 2.2e-05 100_[+2]_12 chr2L:20327532-20327652 2.5e-05 58_[+2]_54 chr2R:11628129-11628249 2.6e-05 88_[+2]_24 chr3R:10391032-10391152 3.4e-05 10_[+2]_102 chr3R:11735470-11735590 3.4e-05 103_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCRCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCRCC width=8 seqs=16 chrX:19308131-19308251 ( 38) GCGCCGCC 1 chr2R:23652344-23652464 ( 82) GCGCCACC 1 chr3R:20948107-20948227 ( 75) GCGCCACC 1 chr2L:16816082-16816202 ( 54) GCGCCACC 1 chr3L:2572141-2572261 ( 69) GCACCGCC 1 chr2R:25085526-25085646 ( 47) GCGCCATC 1 chrX:16105819-16105939 ( 45) GCGCCATC 1 chr2L:1362374-1362494 ( 33) GCGCCATC 1 chr3L:10899337-10899457 ( 45) GCGCCCTC 1 chr3L:1139496-1139616 ( 4) GCTCCGCC 1 chr2R:12475937-12476057 ( 64) GCACCCCC 1 chr3R:29068909-29069029 ( 101) GCACCCCC 1 chr2L:20327532-20327652 ( 59) GCTCCACC 1 chr2R:11628129-11628249 ( 89) CCGCCGCC 1 chr3R:10391032-10391152 ( 11) GCGCTGCC 1 chr3R:11735470-11735590 ( 104) GCGCCGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCRCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 4.6e+002 -1064 -154 240 -1064 -1064 246 -1064 -1064 -79 -1064 196 -134 -1064 246 -1064 -1064 -1064 237 -1064 -234 43 5 108 -1064 -1064 204 -1064 -34 -1064 237 -1064 -234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCRCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 4.6e+002 0.000000 0.062500 0.937500 0.000000 0.000000 1.000000 0.000000 0.000000 0.187500 0.000000 0.687500 0.125000 0.000000 1.000000 0.000000 0.000000 0.000000 0.937500 0.000000 0.062500 0.437500 0.187500 0.375000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.937500 0.000000 0.062500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCRCC MEME-2 regular expression -------------------------------------------------------------------------------- GCGCC[AG][CT]C -------------------------------------------------------------------------------- Time 14.12 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGCCGGG MEME-3 width = 8 sites = 6 llr = 71 E-value = 7.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGCCGGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::8a::2 probability G :aa2:888 matrix T :::::22: bits 2.5 *** * 2.2 *** * 2.0 *** * 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (17.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGGCCGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12463394-12463514 103 1.05e-06 GTCGCGCTAT CGGCCGGG TGTCATCGCC chr2R:20906672-20906792 55 1.05e-06 TTTCCAGGAA CGGCCGGG CTCATCGTTA chrX:362290-362410 21 2.07e-06 TTCCCAGTCT CGGGCGGG GCATTTTGTC chr2L:20881504-20881624 93 3.14e-06 AAGGATTGAA CGGCCGGC CCTACAATGC chrX:10582216-10582336 6 6.88e-06 caACA CGGCCGTG TGTGTCTGTC chrX:16350182-16350302 95 6.88e-06 ACCCACATTA CGGCCTGG CAACACTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12463394-12463514 1e-06 102_[+3]_10 chr2R:20906672-20906792 1e-06 54_[+3]_58 chrX:362290-362410 2.1e-06 20_[+3]_92 chr2L:20881504-20881624 3.1e-06 92_[+3]_20 chrX:10582216-10582336 6.9e-06 5_[+3]_107 chrX:16350182-16350302 6.9e-06 94_[+3]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGCCGGG width=8 seqs=6 chrX:12463394-12463514 ( 103) CGGCCGGG 1 chr2R:20906672-20906792 ( 55) CGGCCGGG 1 chrX:362290-362410 ( 21) CGGGCGGG 1 chr2L:20881504-20881624 ( 93) CGGCCGGC 1 chrX:10582216-10582336 ( 6) CGGCCGTG 1 chrX:16350182-16350302 ( 95) CGGCCTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.6482 E= 7.8e+002 -923 246 -923 -923 -923 -923 250 -923 -923 -923 250 -923 -923 220 -9 -923 -923 246 -923 -923 -923 -923 223 -92 -923 -923 223 -92 -923 -12 223 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 7.8e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.833333 0.166667 0.000000 0.166667 0.833333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGGG MEME-3 regular expression -------------------------------------------------------------------------------- CGGCCGGG -------------------------------------------------------------------------------- Time 20.21 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGTGCAC MEME-4 width = 8 sites = 11 llr = 116 E-value = 3.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGTGCAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :2::::a: pos.-specific C 9::::a:a probability G 12a2a::: matrix T :6:8:::: bits 2.5 * ** * 2.2 * ** * 2.0 * * ** * 1.7 * * ** * Relative 1.5 * * **** Entropy 1.2 * ****** (15.2 bits) 1.0 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGTGCAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTGCAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:15235335-15235455 62 6.13e-06 ATTCGGCCCA CTGTGCAC TGTGGGCCAT chrX:17176734-17176854 104 6.13e-06 AAGTTTTTCT CTGTGCAC CTCGTTATA chr3R:27440761-27440881 107 6.13e-06 TCTTTTCTCA CTGTGCAC GAGAGG chrX:2136464-2136584 73 6.13e-06 GACTAAGCAC CTGTGCAC GCGATCTTAC chr3L:1376127-1376247 98 9.56e-06 TAGTACTGTT CGGTGCAC CGTTTACTTA chr2R:25085526-25085646 86 9.56e-06 GAGTACGACA CGGTGCAC CATCTATTGG chrX:5084844-5084964 46 1.30e-05 TACTTGATGT CTGGGCAC ACTGAAACTG chr2R:18325069-18325189 60 1.30e-05 CCATTCATCT CTGGGCAC CAATTAAAAA chr2R:11738673-11738793 111 1.93e-05 GGAATTTAGT CAGTGCAC GT chr2R:21470628-21470748 107 1.93e-05 TGGTTTTTTG CAGTGCAC TTAAGA chr3R:12997915-12998035 74 3.07e-05 GGCCAAACAA GTGTGCAC GGGGTATGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTGCAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:15235335-15235455 6.1e-06 61_[+4]_51 chrX:17176734-17176854 6.1e-06 103_[+4]_9 chr3R:27440761-27440881 6.1e-06 106_[+4]_6 chrX:2136464-2136584 6.1e-06 72_[+4]_40 chr3L:1376127-1376247 9.6e-06 97_[+4]_15 chr2R:25085526-25085646 9.6e-06 85_[+4]_27 chrX:5084844-5084964 1.3e-05 45_[+4]_67 chr2R:18325069-18325189 1.3e-05 59_[+4]_53 chr2R:11738673-11738793 1.9e-05 110_[+4]_2 chr2R:21470628-21470748 1.9e-05 106_[+4]_6 chr3R:12997915-12998035 3.1e-05 73_[+4]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTGCAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGTGCAC width=8 seqs=11 chr3L:15235335-15235455 ( 62) CTGTGCAC 1 chrX:17176734-17176854 ( 104) CTGTGCAC 1 chr3R:27440761-27440881 ( 107) CTGTGCAC 1 chrX:2136464-2136584 ( 73) CTGTGCAC 1 chr3L:1376127-1376247 ( 98) CGGTGCAC 1 chr2R:25085526-25085646 ( 86) CGGTGCAC 1 chrX:5084844-5084964 ( 46) CTGGGCAC 1 chr2R:18325069-18325189 ( 60) CTGGGCAC 1 chr2R:11738673-11738793 ( 111) CAGTGCAC 1 chr2R:21470628-21470748 ( 107) CAGTGCAC 1 chr3R:12997915-12998035 ( 74) GTGTGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTGCAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8783 E= 3.1e+003 -1010 232 -96 -1010 -84 -1010 4 101 -1010 -1010 250 -1010 -1010 -1010 4 137 -1010 -1010 250 -1010 -1010 246 -1010 -1010 162 -1010 -1010 -1010 -1010 246 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTGCAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 3.1e+003 0.000000 0.909091 0.090909 0.000000 0.181818 0.000000 0.181818 0.636364 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.181818 0.818182 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTGCAC MEME-4 regular expression -------------------------------------------------------------------------------- CTGTGCAC -------------------------------------------------------------------------------- Time 26.43 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGTGCGT MEME-5 width = 8 sites = 3 llr = 38 E-value = 2.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGTGCGT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:::a:: probability G a:a:a:a: matrix T :::a:::a bits 2.5 *** *** 2.2 *** *** 2.0 *** *** 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (18.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGTGCGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGCGT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:18566707-18566827 45 3.25e-06 AACAAGAAGC GCGTGCGT ACACGCAGAA chr3L:13262373-13262493 39 3.25e-06 CAAGCTATGT GCGTGCGT ACACAGCGAG chrX:2294672-2294792 80 3.25e-06 GAGTTCATGA GCGTGCGT TGTGAATGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGCGT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:18566707-18566827 3.2e-06 44_[+5]_68 chr3L:13262373-13262493 3.2e-06 38_[+5]_74 chrX:2294672-2294792 3.2e-06 79_[+5]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGCGT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGTGCGT width=8 seqs=3 chr2L:18566707-18566827 ( 45) GCGTGCGT 1 chr3L:13262373-13262493 ( 39) GCGTGCGT 1 chrX:2294672-2294792 ( 80) GCGTGCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGCGT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 2.0e+004 -823 -823 249 -823 -823 246 -823 -823 -823 -823 249 -823 -823 -823 -823 166 -823 -823 249 -823 -823 246 -823 -823 -823 -823 249 -823 -823 -823 -823 166 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGCGT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGCGT MEME-5 regular expression -------------------------------------------------------------------------------- GCGTGCGT -------------------------------------------------------------------------------- Time 32.89 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1167040-1167160 9.69e-01 120 chrX:19146443-19146563 9.63e-01 120 chr3L:1139496-1139616 8.65e-02 3_[+2(1.95e-05)]_109 chr3L:2393215-2393335 7.39e-01 120 chrX:8493612-8493732 9.14e-01 120 chr3L:5630254-5630374 9.99e-01 120 chr3L:648187-648307 7.85e-01 120 chr3R:19011032-19011152 9.26e-01 120 chr2L:1362374-1362494 3.91e-04 32_[+2(1.18e-05)]_17_[+2(1.18e-05)]_\ 55 chr2L:9775348-9775468 2.48e-01 120 chr2R:22540021-22540141 2.04e-01 120 chrX:8677577-8677697 9.64e-01 120 chrX:16105819-16105939 6.78e-04 44_[+2(1.18e-05)]_26_[+5(1.73e-05)]_\ 26_[+2(8.11e-05)] chrX:8671512-8671632 7.76e-01 120 chr2L:19949747-19949867 7.98e-01 120 chr2R:23258761-23258881 8.65e-01 120 chr3R:8920214-8920334 5.77e-02 66_[+1(6.06e-05)]_46 chr3L:21205112-21205232 4.16e-02 120 chr3R:31369125-31369245 7.17e-01 120 chr2L:10497560-10497680 2.35e-01 120 chrX:4498433-4498553 9.57e-02 120 chr2L:16816082-16816202 1.02e-03 53_[+2(3.14e-06)]_59 chr2L:8229309-8229429 1.34e-02 120 chrX:12221679-12221799 1.06e-01 120 chr3R:16704400-16704520 9.95e-01 120 chr3L:648387-648507 2.20e-01 120 chrX:7703101-7703221 1.00e+00 120 chr3R:15644868-15644988 8.06e-01 120 chr3R:14356771-14356891 4.61e-01 120 chr3L:2894833-2894953 4.30e-03 58_[+2(9.57e-05)]_54 chrX:2294672-2294792 3.89e-04 79_[+5(3.25e-06)]_33 chrX:6091013-6091133 8.87e-05 53_[+1(1.09e-05)]_5_[+1(7.13e-05)]_\ 46 chr3L:10362690-10362810 1.00e+00 120 chr2R:14488415-14488535 1.07e-02 43_[+1(2.92e-06)]_69 chrX:16650542-16650662 3.16e-01 120 chr2R:11044551-11044671 6.66e-01 120 chr2L:20327532-20327652 9.92e-03 58_[+2(2.52e-05)]_54 chrX:6179545-6179665 8.74e-01 120 chr2L:11331789-11331909 1.00e+00 120 chr3L:2572141-2572261 4.79e-03 68_[+2(8.24e-06)]_44 chr2L:12509606-12509726 6.40e-01 120 chrX:18533337-18533457 4.50e-01 120 chr3L:20518285-20518405 1.33e-01 120 chrX:9042763-9042883 9.31e-01 120 chrX:8884082-8884202 8.76e-02 120 chr3L:8853062-8853182 2.68e-03 93_[+1(2.97e-05)]_19 chr3R:10024181-10024301 9.20e-01 120 chrX:20506051-20506171 4.34e-01 120 chr3L:11408859-11408979 4.68e-01 120 chr3R:9938631-9938751 9.16e-01 120 chrX:3403508-3403628 4.47e-01 120 chr2R:21514498-21514618 6.86e-01 120 chrX:10587662-10587782 6.03e-01 120 chr3L:9972615-9972735 9.26e-01 120 chrX:10184773-10184893 6.92e-01 120 chr3R:29089837-29089957 9.61e-01 120 chrX:3538929-3539049 8.03e-01 120 chr2L:15254417-15254537 1.00e+00 120 chrX:8542854-8542974 7.69e-01 120 chr3L:10741313-10741433 1.41e-03 41_[+1(4.74e-05)]_71 chr2L:19252513-19252633 7.94e-01 120 chr3L:1195949-1196069 3.61e-04 57_[+1(5.53e-05)]_55 chr3L:1578652-1578772 3.53e-01 120 chrX:3714148-3714268 9.12e-01 120 chr2R:24411769-24411889 6.50e-01 120 chr2R:21202855-21202975 5.79e-01 120 chrX:10387769-10387889 9.88e-01 120 chr2R:21470628-21470748 2.12e-01 106_[+4(1.93e-05)]_6 chr2R:18325069-18325189 1.61e-02 59_[+4(1.30e-05)]_53 chr2R:20906672-20906792 7.89e-05 54_[+3(1.05e-06)]_58 chrX:10473712-10473832 1.02e-01 120 chrX:15027045-15027165 1.56e-01 120 chr2R:21910013-21910133 8.01e-01 120 chr3L:745657-745777 9.62e-01 120 chr3L:10858881-10859001 6.86e-03 6_[+1(1.09e-05)]_106 chr2R:22387669-22387789 9.53e-01 120 chrX:362290-362410 5.27e-04 20_[+3(2.07e-06)]_92 chr3L:13262373-13262493 1.31e-02 38_[+5(3.25e-06)]_74 chr2L:493418-493538 8.54e-01 120 chr2R:11792793-11792913 7.46e-02 120 chr2L:7985027-7985147 5.36e-01 120 chr2R:13482300-13482420 3.32e-01 120 chrX:618766-618886 1.10e-03 120 chr3R:13717000-13717120 5.83e-01 120 chrX:4609889-4610009 1.30e-01 120 chr2R:7077045-7077165 6.96e-03 107_[+4(9.56e-06)]_5 chr2L:6339697-6339817 7.00e-01 120 chr3L:3059377-3059497 2.02e-01 120 chr3R:29005037-29005157 8.61e-01 120 chr2L:21619178-21619298 7.01e-01 120 chr2R:11809511-11809631 5.55e-01 120 chrX:12463394-12463514 4.16e-05 102_[+3(1.05e-06)]_10 chr3R:29757331-29757451 9.14e-02 120 chrX:5084844-5084964 3.61e-03 45_[+4(1.30e-05)]_67 chr2R:19311013-19311133 1.34e-01 70_[+4(5.24e-05)]_42 chr2L:12463135-12463255 9.98e-01 120 chr2L:7616966-7617086 7.42e-01 120 chrX:16350182-16350302 3.86e-03 94_[+3(6.88e-06)]_18 chr2R:9388682-9388802 9.81e-01 120 chr3L:3080568-3080688 8.44e-02 120 chr3R:29699385-29699505 8.30e-01 120 chrX:18239435-18239555 2.23e-03 5_[+1(2.07e-05)]_107 chrX:13630388-13630508 9.97e-01 120 chrX:16103554-16103674 9.97e-01 120 chr2R:10160293-10160413 5.08e-01 120 chr3R:29083841-29083961 2.41e-03 39_[+1(7.13e-05)]_73 chr3R:31395340-31395460 3.18e-01 120 chr3R:20948107-20948227 5.65e-03 74_[+2(3.14e-06)]_38 chrX:17696850-17696970 8.18e-01 120 chr3R:26436710-26436830 3.60e-01 120 chr2L:220738-220858 3.81e-02 120 chr2L:18566707-18566827 3.74e-04 44_[+5(3.25e-06)]_68 chr3L:5789873-5789993 9.83e-01 120 chr3R:22121372-22121492 1.00e+00 120 chr3R:29265245-29265365 7.48e-01 120 chr3R:27289804-27289924 4.89e-01 120 chr3L:8029508-8029628 3.91e-01 120 chrX:8491885-8492005 4.63e-03 100_[+1(5.11e-05)]_12 chrX:13333045-13333165 8.32e-01 120 chr3R:11735470-11735590 2.72e-07 51_[+1(1.87e-06)]_9_[+1(5.11e-05)]_\ 27_[+2(3.43e-05)]_9 chr3R:6818696-6818816 4.18e-01 120 chr3R:29068909-29069029 3.99e-02 100_[+2(2.15e-05)]_12 chrX:13253191-13253311 9.80e-01 120 chr2L:9494883-9495003 1.98e-01 120 chr2L:1158254-1158374 9.97e-01 120 chr2R:12475937-12476057 3.10e-02 63_[+2(2.15e-05)]_49 chrX:3068411-3068531 4.51e-01 120 chr2L:3587396-3587516 9.05e-01 120 chr2L:1123495-1123615 6.94e-01 120 chr3L:15999747-15999867 5.40e-01 120 chr3R:10140487-10140607 4.14e-01 120 chr3L:9028172-9028292 8.66e-01 120 chr3R:4846904-4847024 4.79e-01 120 chr3L:2152153-2152273 7.58e-01 120 chrX:18404927-18405047 5.84e-02 120 chr2L:14376914-14377034 5.80e-01 120 chr3R:5686484-5686604 3.74e-01 120 chr3R:16069415-16069535 1.06e-02 17_[+1(1.57e-05)]_95 chr3L:5988870-5988990 3.61e-02 120 chr2R:11541220-11541340 3.27e-02 6_[+4(4.54e-05)]_106 chrX:2136464-2136584 1.49e-04 30_[+1(8.68e-05)]_34_[+4(6.13e-06)]_\ 40 chr3L:765911-766031 1.63e-01 120 chr3R:10391032-10391152 5.28e-04 10_[+2(3.43e-05)]_92_[+3(1.16e-05)]_\ 2 chr3R:14657179-14657299 9.85e-01 120 chr2L:8982802-8982922 9.89e-01 120 chr2R:19127981-19128101 6.07e-01 120 chr2R:11178566-11178686 7.92e-01 120 chr3R:30501383-30501503 6.92e-01 120 chr2L:3003564-3003684 9.63e-01 120 chrX:2166270-2166390 4.08e-01 120 chr3R:27440761-27440881 4.78e-02 106_[+4(6.13e-06)]_6 chr3R:26888516-26888636 9.86e-01 120 chr2R:11628129-11628249 7.71e-05 88_[+2(2.63e-05)]_6_[+1(1.09e-05)]_\ 10 chr2R:17698937-17699057 1.63e-01 120 chr3L:627891-628011 1.20e-01 120 chr2R:13055010-13055130 1.30e-01 120 chr2L:11417638-11417758 9.99e-01 120 chr2L:7339691-7339811 9.54e-02 120 chr3L:21007872-21007992 6.25e-01 120 chrX:5883532-5883652 2.65e-01 120 chr2R:17161040-17161160 6.42e-01 120 chrX:16386010-16386130 4.72e-01 120 chr3L:10745776-10745896 9.42e-01 120 chr3R:12997915-12998035 1.18e-02 73_[+4(3.07e-05)]_39 chr2L:7494348-7494468 9.54e-01 120 chr3R:27557138-27557258 4.85e-01 120 chr3L:8689822-8689942 1.86e-02 84_[+1(1.09e-05)]_28 chrX:10326012-10326132 8.47e-01 120 chr3R:25004898-25005018 9.56e-01 120 chr2L:14359110-14359230 3.13e-01 2_[+1(9.55e-05)]_110 chr3R:18242110-18242230 4.08e-01 120 chrX:3188540-3188660 4.31e-01 120 chr3R:16655817-16655937 4.71e-01 120 chrX:7571372-7571492 1.78e-01 110_[+4(4.35e-05)]_2 chr3R:26937606-26937726 8.54e-01 120 chr3L:10899337-10899457 1.52e-04 44_[+2(1.95e-05)]_42_[+1(2.97e-05)]_\ 18 chr2R:10103763-10103883 1.00e+00 120 chrX:19008989-19009109 2.50e-01 120 chr3R:21151524-21151644 9.49e-01 120 chr3R:18670583-18670703 9.99e-01 120 chr2L:20911564-20911684 1.19e-02 83_[+4(7.49e-05)]_29 chr3L:16571472-16571592 8.63e-01 120 chrX:19308131-19308251 3.62e-04 37_[+2(1.11e-06)]_75 chr2L:7871925-7872045 1.13e-01 30_[+4(4.35e-05)]_82 chr2L:8573024-8573144 7.80e-01 120 chr3R:9344847-9344967 3.18e-01 120 chr3L:6982051-6982171 1.85e-01 120 chr3L:4292219-4292339 2.00e-01 120 chr2R:23868637-23868757 5.71e-01 120 chr2L:8692541-8692661 8.37e-01 120 chr3L:20630802-20630922 3.31e-01 120 chr3R:14470687-14470807 9.97e-01 120 chrX:17176734-17176854 3.84e-02 103_[+4(6.13e-06)]_9 chr3R:22664408-22664528 4.28e-02 69_[+1(1.09e-05)]_43 chr2L:1150708-1150828 8.34e-02 120 chrX:6375767-6375887 2.36e-01 120 chr2L:7239477-7239597 2.13e-01 120 chr3R:18215510-18215630 9.04e-01 120 chrX:7015112-7015232 1.92e-01 120 chrX:14602707-14602827 4.87e-03 120 chr3R:23028639-23028759 4.74e-01 120 chr2R:21183136-21183256 9.32e-01 120 chr3R:30413951-30414071 7.20e-01 120 chr2R:9006913-9007033 4.32e-01 120 chr3R:30305038-30305158 2.74e-01 120 chr2R:11738673-11738793 3.64e-02 110_[+4(1.93e-05)]_2 chr3L:20944327-20944447 5.66e-03 62_[+1(3.96e-05)]_23_[+2(9.57e-05)]_\ 19 chr2L:8488879-8488999 7.34e-01 120 chr2L:6700751-6700871 7.39e-01 120 chr3L:3305591-3305711 1.90e-01 23_[+1(8.68e-05)]_89 chr2L:18136711-18136831 9.14e-04 1_[+1(2.92e-06)]_111 chrX:13137176-13137296 4.02e-01 120 chr2L:10856577-10856697 5.43e-01 120 chr2R:9440363-9440483 9.97e-01 120 chr3L:19575774-19575894 2.80e-02 120 chrX:10582216-10582336 1.11e-02 5_[+3(6.88e-06)]_107 chr2R:25085526-25085646 9.33e-05 46_[+2(1.18e-05)]_31_[+4(9.56e-06)]_\ 27 chrX:9137316-9137436 2.84e-01 120 chr3R:23176878-23176998 4.60e-01 120 chrX:20394216-20394336 8.68e-01 120 chr2R:16571763-16571883 1.85e-01 120 chr3R:26172155-26172275 7.84e-01 120 chr3L:2489588-2489708 3.78e-01 120 chr3R:10411835-10411955 8.85e-01 120 chr2L:20881504-20881624 2.10e-02 92_[+3(3.14e-06)]_20 chr3R:20835026-20835146 5.05e-02 75_[+1(7.13e-05)]_37 chr2R:22688643-22688763 1.24e-01 120 chr3L:16386033-16386153 1.00e+00 120 chr2R:7699132-7699252 7.03e-01 120 chr3L:20194824-20194944 2.34e-01 120 chr3L:11403586-11403706 8.45e-02 57_[+1(3.96e-05)]_55 chr3R:16006076-16006196 1.44e-02 63_[+1(2.07e-05)]_49 chr3L:15235335-15235455 1.54e-03 61_[+4(6.13e-06)]_51 chr2L:19159381-19159501 7.08e-01 120 chr2L:7494548-7494668 5.19e-02 91_[+1(1.57e-05)]_21 chr2R:23652344-23652464 2.31e-04 42_[+2(1.18e-05)]_31_[+2(3.14e-06)]_\ 31 chr2L:14519451-14519571 2.58e-01 120 chr2L:5543156-5543276 6.86e-01 120 chr3L:1376127-1376247 8.72e-03 97_[+4(9.56e-06)]_15 chr2L:11203733-11203853 3.20e-01 120 chr3R:20542397-20542517 9.96e-01 120 chr3L:8526158-8526278 8.36e-01 120 chr3L:8751391-8751511 8.20e-01 120 chr3R:4387566-4387686 3.99e-01 120 chr2R:21049345-21049465 6.07e-01 120 chr3R:19848006-19848126 1.40e-01 120 chrX:3357767-3357887 8.79e-01 120 chr3L:361347-361467 6.74e-01 120 chr3L:10845213-10845333 4.02e-02 120 chr3L:7861153-7861273 9.44e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************