******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/bab1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:8481601-8481721 1.0000 120 chrX:8473459-8473579 1.0000 120 chrX:8484917-8485037 1.0000 120 chrX:8479170-8479290 1.0000 120 chrX:8472076-8472196 1.0000 120 chrX:8470467-8470587 1.0000 120 chr3R:22816564-22816684 1.0000 120 chrX:7873533-7873653 1.0000 120 chr2R:13550385-13550505 1.0000 120 chrX:3667392-3667512 1.0000 120 chrX:11373440-11373560 1.0000 120 chrX:14501153-14501273 1.0000 120 chrX:8477920-8478040 1.0000 120 chrX:8476082-8476202 1.0000 120 chr2L:9487618-9487738 1.0000 120 chrX:8483699-8483819 1.0000 120 chr3R:25735792-25735912 1.0000 120 chrX:10362671-10362791 1.0000 120 chr3R:27228503-27228623 1.0000 120 chrX:10125799-10125919 1.0000 120 chr3L:9552357-9552477 1.0000 120 chr2L:2131575-2131695 1.0000 120 chrX:13972545-13972665 1.0000 120 chrX:9578920-9579040 1.0000 120 chrX:6641724-6641844 1.0000 120 chr3L:8694039-8694159 1.0000 120 chrX:17532390-17532510 1.0000 120 chrX:16423267-16423387 1.0000 120 chr2R:7256266-7256386 1.0000 120 chr3R:30751016-30751136 1.0000 120 chr3R:7076705-7076825 1.0000 120 chrX:2714941-2715061 1.0000 120 chrX:11081948-11082068 1.0000 120 chrX:4615787-4615907 1.0000 120 chr2L:12271406-12271526 1.0000 120 chr3L:6253835-6253955 1.0000 120 chrX:9502442-9502562 1.0000 120 chr3L:20113010-20113130 1.0000 120 chrX:22487087-22487207 1.0000 120 chrX:11680538-11680658 1.0000 120 chrX:2075992-2076112 1.0000 120 chr3R:13061887-13062007 1.0000 120 chr3R:14902078-14902198 1.0000 120 chrX:11550181-11550301 1.0000 120 chr3L:12834757-12834877 1.0000 120 chr2R:10045482-10045602 1.0000 120 chrX:17588177-17588297 1.0000 120 chr3R:14736790-14736910 1.0000 120 chr2L:4043183-4043303 1.0000 120 chrX:9163265-9163385 1.0000 120 chrX:4590597-4590717 1.0000 120 chrX:8489672-8489792 1.0000 120 chrX:5916274-5916394 1.0000 120 chr2R:23560435-23560555 1.0000 120 chr3L:9743282-9743402 1.0000 120 chr2L:3059297-3059417 1.0000 120 chrX:15991871-15991991 1.0000 120 chrX:8258424-8258544 1.0000 120 chr3R:27561287-27561407 1.0000 120 chr2L:13400800-13400920 1.0000 120 chrX:9159918-9160038 1.0000 120 chr3L:19349890-19350010 1.0000 120 chrX:658176-658296 1.0000 120 chr2R:11654074-11654194 1.0000 120 chr2R:18553786-18553906 1.0000 120 chr3R:31986912-31987032 1.0000 120 chrX:2196202-2196322 1.0000 120 chr3L:8685448-8685568 1.0000 120 chrX:1819177-1819297 1.0000 120 chrX:13734959-13735079 1.0000 120 chrX:2145272-2145392 1.0000 120 chrX:4614465-4614585 1.0000 120 chr3L:11135930-11136050 1.0000 120 chr2R:18314468-18314588 1.0000 120 chr2L:12207683-12207803 1.0000 120 chr3R:29935869-29935989 1.0000 120 chr2R:16164035-16164155 1.0000 120 chr2R:12321171-12321291 1.0000 120 chrX:8260007-8260127 1.0000 120 chr2L:10002619-10002739 1.0000 120 chr2L:21235794-21235914 1.0000 120 chr2L:16537132-16537252 1.0000 120 chr2L:19432547-19432667 1.0000 120 chrX:8461551-8461671 1.0000 120 chrX:19845849-19845969 1.0000 120 chr3L:12075095-12075215 1.0000 120 chr2R:18857867-18857987 1.0000 120 chrX:3390005-3390125 1.0000 120 chr3L:16696480-16696600 1.0000 120 chr3R:9783339-9783459 1.0000 120 chr3R:22365971-22366091 1.0000 120 chr2R:5608712-5608832 1.0000 120 chr2R:7793097-7793217 1.0000 120 chrX:13838419-13838539 1.0000 120 chr2R:7458817-7458937 1.0000 120 chrX:19701761-19701881 1.0000 120 chr3L:3334918-3335038 1.0000 120 chr3L:13994458-13994578 1.0000 120 chrX:8895089-8895209 1.0000 120 chr3R:5694583-5694703 1.0000 120 chr2L:15275081-15275201 1.0000 120 chr2R:16343629-16343749 1.0000 120 chr2L:10802414-10802534 1.0000 120 chrX:8442280-8442400 1.0000 120 chr2L:4915765-4915885 1.0000 120 chr3L:14605426-14605546 1.0000 120 chr2L:6476961-6477081 1.0000 120 chr2R:11384145-11384265 1.0000 120 chr2L:8485725-8485845 1.0000 120 chr2R:10110886-10111006 1.0000 120 chr3L:564054-564174 1.0000 120 chr2R:6871301-6871421 1.0000 120 chr3R:19158153-19158273 1.0000 120 chr3L:343002-343122 1.0000 120 chr3R:8893137-8893257 1.0000 120 chr3L:19869693-19869813 1.0000 120 chr3L:4532132-4532252 1.0000 120 chrX:14607054-14607174 1.0000 120 chr2R:16673043-16673163 1.0000 120 chrX:5876776-5876896 1.0000 120 chr3L:18032884-18033004 1.0000 120 chrX:7691627-7691747 1.0000 120 chrX:8491622-8491742 1.0000 120 chrX:17832706-17832826 1.0000 120 chr3R:6380342-6380462 1.0000 120 chrX:3448153-3448273 1.0000 120 chr3L:11623658-11623778 1.0000 120 chrX:9085865-9085985 1.0000 120 chr3R:23004333-23004453 1.0000 120 chr2L:13382509-13382629 1.0000 120 chrX:13568313-13568433 1.0000 120 chr2L:9618118-9618238 1.0000 120 chr2L:844010-844130 1.0000 120 chr3R:8930283-8930403 1.0000 120 chrX:11891933-11892053 1.0000 120 chrX:8461333-8461453 1.0000 120 chr3L:16580219-16580339 1.0000 120 chr3L:1519274-1519394 1.0000 120 chr3L:8652038-8652158 1.0000 120 chr2L:18153166-18153286 1.0000 120 chr2R:24959630-24959750 1.0000 120 chr3R:30206125-30206245 1.0000 120 chr3R:5520723-5520843 1.0000 120 chr2L:9495459-9495579 1.0000 120 chr3L:5750083-5750203 1.0000 120 chrX:8242490-8242610 1.0000 120 chr2R:17140386-17140506 1.0000 120 chr2R:8672094-8672214 1.0000 120 chrX:16313170-16313290 1.0000 120 chr2R:15537940-15538060 1.0000 120 chr2L:6012447-6012567 1.0000 120 chr3L:2481583-2481703 1.0000 120 chr3L:8523419-8523539 1.0000 120 chr3L:16643106-16643226 1.0000 120 chr2L:19756861-19756981 1.0000 120 chr3R:29004992-29005112 1.0000 120 chr3L:9552558-9552678 1.0000 120 chr3R:25335177-25335297 1.0000 120 chr2R:20270954-20271074 1.0000 120 chr3R:27165542-27165662 1.0000 120 chrX:21519340-21519460 1.0000 120 chr2R:6758818-6758938 1.0000 120 chr3L:19845199-19845319 1.0000 120 chr2L:4465118-4465238 1.0000 120 chr3L:20427628-20427748 1.0000 120 chr3L:2772114-2772234 1.0000 120 chrX:11359193-11359313 1.0000 120 chr2R:24195510-24195630 1.0000 120 chrX:15701229-15701349 1.0000 120 chrX:12241190-12241310 1.0000 120 chr2R:23843229-23843349 1.0000 120 chr3R:20585716-20585836 1.0000 120 chr3R:8304021-8304141 1.0000 120 chr3R:11813232-11813352 1.0000 120 chr3L:11125924-11126044 1.0000 120 chr3R:22747549-22747669 1.0000 120 chr2R:9846509-9846629 1.0000 120 chr2L:7434933-7435053 1.0000 120 chr2R:18705909-18706029 1.0000 120 chr2L:19049020-19049140 1.0000 120 chrX:17694949-17695069 1.0000 120 chrX:5428491-5428611 1.0000 120 chr3R:21130154-21130274 1.0000 120 chrX:15732051-15732171 1.0000 120 chr3L:1884869-1884989 1.0000 120 chr2R:16143113-16143233 1.0000 120 chr3L:8932026-8932146 1.0000 120 chrX:3570417-3570537 1.0000 120 chr3L:19338387-19338507 1.0000 120 chr2L:20831192-20831312 1.0000 120 chrX:13401373-13401493 1.0000 120 chr2R:13430979-13431099 1.0000 120 chr2R:8906756-8906876 1.0000 120 chrX:10877585-10877705 1.0000 120 chr2R:23693916-23694036 1.0000 120 chr2R:9863562-9863682 1.0000 120 chr2L:10342608-10342728 1.0000 120 chr2R:19125776-19125896 1.0000 120 chr3R:23601656-23601776 1.0000 120 chrX:17842025-17842145 1.0000 120 chr3L:2244203-2244323 1.0000 120 chr2R:12423494-12423614 1.0000 120 chr3R:13088522-13088642 1.0000 120 chrX:6684206-6684326 1.0000 120 chr3R:22468002-22468122 1.0000 120 chrX:6090962-6091082 1.0000 120 chrX:2603992-2604112 1.0000 120 chrX:2107941-2108061 1.0000 120 chr2R:19728110-19728230 1.0000 120 chr3R:10045466-10045586 1.0000 120 chr2R:12336463-12336583 1.0000 120 chr2R:7823571-7823691 1.0000 120 chrX:17149026-17149146 1.0000 120 chr3L:15498880-15499000 1.0000 120 chr2R:13437788-13437908 1.0000 120 chr2R:7989136-7989256 1.0000 120 chr3R:9950055-9950175 1.0000 120 chr3L:18026045-18026165 1.0000 120 chr2R:16868298-16868418 1.0000 120 chr3R:16273049-16273169 1.0000 120 chr2L:9963834-9963954 1.0000 120 chr3R:30459208-30459328 1.0000 120 chr2R:12184247-12184367 1.0000 120 chrX:13109863-13109983 1.0000 120 chr3R:12456481-12456601 1.0000 120 chrX:15308599-15308719 1.0000 120 chrX:10899346-10899466 1.0000 120 chrX:11485209-11485329 1.0000 120 chr2R:21025064-21025184 1.0000 120 chrX:9047112-9047232 1.0000 120 chr3R:31743423-31743543 1.0000 120 chr2R:6171523-6171643 1.0000 120 chr2L:9176885-9177005 1.0000 120 chr3L:7970745-7970865 1.0000 120 chrX:11483441-11483561 1.0000 120 chr3R:9581148-9581268 1.0000 120 chr3R:30134179-30134299 1.0000 120 chrX:19616104-19616224 1.0000 120 chr2L:2009720-2009840 1.0000 120 chr2R:9143846-9143966 1.0000 120 chr3L:7339491-7339611 1.0000 120 chr2R:17019324-17019444 1.0000 120 chr2R:10617641-10617761 1.0000 120 chr3L:8121735-8121855 1.0000 120 chr2R:12145656-12145776 1.0000 120 chr3L:652753-652873 1.0000 120 chr2R:16581726-16581846 1.0000 120 chrX:12663056-12663176 1.0000 120 chr2R:18134490-18134610 1.0000 120 chr4:466639-466759 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_bab1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/bab1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.304 C 0.195 G 0.194 T 0.306 Background letter frequencies (from file dataset with add-one prior applied): A 0.304 C 0.195 G 0.194 T 0.306 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AWCAGCTG MEME-1 width = 8 sites = 48 llr = 419 E-value = 2.1e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 951a1::: pos.-specific C 118::9:: probability G ::::91:a matrix T :41:::a: bits 2.4 * 2.1 * * 1.9 ** * 1.7 ***** Relative 1.4 ****** Entropy 1.2 * ****** (12.6 bits) 0.9 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AACAGCTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2009720-2009840 76 1.23e-05 GTCTTTGCTA AACAGCTG ATTCGGCTGC chr2R:21025064-21025184 45 1.23e-05 TACACTGGCG AACAGCTG TTTTTTGTCA chr3R:30459208-30459328 35 1.23e-05 AAAAGCTGGA AACAGCTG TTCTCCCACG chr2R:12423494-12423614 46 1.23e-05 CATCCGTGCG AACAGCTG TCAGATCAGC chr2R:23693916-23694036 75 1.23e-05 AAGAAGTGAA AACAGCTG ACAGCAGCAG chr3L:1884869-1884989 30 1.23e-05 TGCCGTACGG AACAGCTG ATAAGTCAGC chr3R:22747549-22747669 24 1.23e-05 AAAACTTTCA AACAGCTG TTGGCCAGTG chr3R:25335177-25335297 45 1.23e-05 CAACTGAAAA AACAGCTG AGTGAGTAGT chr2R:6871301-6871421 73 1.23e-05 GCGATCGTCG AACAGCTG TTGTTCGCCG chr2R:10110886-10111006 12 1.23e-05 CCAGCTGATC AACAGCTG AACGATTGTG chr2L:15275081-15275201 90 1.23e-05 TGATTTGATG AACAGCTG TTCAATGGAT chr2R:12321171-12321291 52 1.23e-05 TACCTGCCGG AACAGCTG TTAAAACAGA chr2L:12207683-12207803 101 1.23e-05 TGCCAAAAAC AACAGCTG ATCGCGCGGC chrX:9159918-9160038 33 1.23e-05 GAACAAACCA AACAGCTG ATTAGAGCTG chr2R:23560435-23560555 52 1.23e-05 TCGCCGTTCG AACAGCTG TTTTCTGTTG chr3L:15498880-15499000 65 2.47e-05 ACTCAACACA ATCAGCTG ACAGCCGCTC chr3R:10045466-10045586 53 2.47e-05 ATGTTTTCGA ATCAGCTG TTCGTTATGC chr3R:13088522-13088642 104 2.47e-05 AAAGCGATCG ATCAGCTG CTCTGCACA chr2L:4465118-4465238 48 2.47e-05 ACAGATGATG ATCAGCTG TTTGTTGTTT chr3L:19845199-19845319 55 2.47e-05 GCCACCTCTA ATCAGCTG AGCGCCGATG chr3R:29935869-29935989 10 2.47e-05 AACAAAATA ATCAGCTG TTCGAAGGCT chr3R:27228503-27228623 11 2.47e-05 GGCAGTGGCA ATCAGCTG ACTGCGAAAG chrX:8477920-8478040 63 2.47e-05 TCTAGCGAAG ATCAGCTG CACGCCGAGC chr2R:16143113-16143233 25 3.26e-05 CCTGCCGACA ACCAGCTG TTGCTCACAA chr2R:15537940-15538060 73 3.26e-05 GATATTGTTA ACCAGCTG ACTAACTTTC chr3R:22365971-22366091 30 3.26e-05 GCGATTGGCA ACCAGCTG ACATATTCTG chr2L:3059297-3059417 95 3.26e-05 CCAACTTTCC ACCAGCTG AACATTCAAA chr2R:12184247-12184367 38 4.05e-05 GTAGTGTGAC CACAGCTG CGCTGTGTAA chr2L:10342608-10342728 110 4.84e-05 ATTTTCTATT CTCAGCTG TTT chr3L:11623658-11623778 62 4.84e-05 AGCGATTCCA CTCAGCTG TTAACCGCTT chrX:3570417-3570537 48 6.76e-05 AAGCTTTTGA AAAAGCTG TTTGCGTAGC chr3L:343002-343122 10 6.76e-05 GCTGTAGCG AAAAGCTG CGTACATTTT chr2R:18553786-18553906 97 6.76e-05 TCAAAAGGTG AAAAGCTG TTTTTTGTTG chrX:13109863-13109983 72 1.07e-04 TGGTATAAAT ATAAGCTG CTAAAATATC chrX:8473459-8473579 32 1.07e-04 AAACATTTGT ATAAGCTG GCATAATTCA chr3L:18026045-18026165 54 1.47e-04 GCAAGTTTCA GTCAGCTG TTCGCTTTGT chr2R:9846509-9846629 11 1.47e-04 ATCGAGGTTT AATAGCTG CAGGCACATT chr2L:10802414-10802534 16 1.47e-04 GCTAAAAAAG ATCAGGTG ATTTCATTTG chr2L:19432547-19432667 34 1.47e-04 TCTGTTAGTT GTCAGCTG ACTGCCAATC chr2R:7256266-7256386 102 1.47e-04 TATCAAGGCA AATAGCTG TTGGAAAATT chr3L:8685448-8685568 69 1.66e-04 TGACATTATC ATTAGCTG TTTATTGGGT chr2L:4043183-4043303 63 1.66e-04 TAATTTTAGA ATTAGCTG GTAATACGCT chrX:17149026-17149146 44 1.90e-04 TCAAAACAGC AACAACTG TTGAGAATAA chr2R:23843229-23843349 68 2.10e-04 CAGCGATGGT ATCAACTG GAATTCGATT chr3L:4532132-4532252 31 2.10e-04 AGTTGCGCGA ATCAACTG AGCGAAGGTG chr3L:12075095-12075215 40 2.38e-04 CGCACTCATC ATCAGCCG CCTCACCTGA chr3R:20585716-20585836 94 2.51e-04 TAACAGTGTG ACCAGGTG GCAAGCACAA chr2R:11384145-11384265 68 2.51e-04 TGAGAGCGCC ACCAGGTG GAGCGGCGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2009720-2009840 1.2e-05 75_[+1]_37 chr2R:21025064-21025184 1.2e-05 44_[+1]_68 chr3R:30459208-30459328 1.2e-05 34_[+1]_78 chr2R:12423494-12423614 1.2e-05 45_[+1]_67 chr2R:23693916-23694036 1.2e-05 74_[+1]_38 chr3L:1884869-1884989 1.2e-05 29_[+1]_83 chr3R:22747549-22747669 1.2e-05 23_[+1]_89 chr3R:25335177-25335297 1.2e-05 44_[+1]_68 chr2R:6871301-6871421 1.2e-05 72_[+1]_40 chr2R:10110886-10111006 1.2e-05 11_[+1]_101 chr2L:15275081-15275201 1.2e-05 89_[+1]_23 chr2R:12321171-12321291 1.2e-05 51_[+1]_61 chr2L:12207683-12207803 1.2e-05 100_[+1]_12 chrX:9159918-9160038 1.2e-05 32_[+1]_80 chr2R:23560435-23560555 1.2e-05 51_[+1]_61 chr3L:15498880-15499000 2.5e-05 64_[+1]_48 chr3R:10045466-10045586 2.5e-05 52_[+1]_60 chr3R:13088522-13088642 2.5e-05 103_[+1]_9 chr2L:4465118-4465238 2.5e-05 47_[+1]_65 chr3L:19845199-19845319 2.5e-05 54_[+1]_58 chr3R:29935869-29935989 2.5e-05 9_[+1]_103 chr3R:27228503-27228623 2.5e-05 10_[+1]_102 chrX:8477920-8478040 2.5e-05 62_[+1]_50 chr2R:16143113-16143233 3.3e-05 24_[+1]_88 chr2R:15537940-15538060 3.3e-05 72_[+1]_40 chr3R:22365971-22366091 3.3e-05 29_[+1]_83 chr2L:3059297-3059417 3.3e-05 94_[+1]_18 chr2R:12184247-12184367 4e-05 37_[+1]_75 chr2L:10342608-10342728 4.8e-05 109_[+1]_3 chr3L:11623658-11623778 4.8e-05 61_[+1]_51 chrX:3570417-3570537 6.8e-05 47_[+1]_65 chr3L:343002-343122 6.8e-05 9_[+1]_103 chr2R:18553786-18553906 6.8e-05 96_[+1]_16 chrX:13109863-13109983 0.00011 71_[+1]_41 chrX:8473459-8473579 0.00011 31_[+1]_81 chr3L:18026045-18026165 0.00015 53_[+1]_59 chr2R:9846509-9846629 0.00015 10_[+1]_102 chr2L:10802414-10802534 0.00015 15_[+1]_97 chr2L:19432547-19432667 0.00015 33_[+1]_79 chr2R:7256266-7256386 0.00015 101_[+1]_11 chr3L:8685448-8685568 0.00017 68_[+1]_44 chr2L:4043183-4043303 0.00017 62_[+1]_50 chrX:17149026-17149146 0.00019 43_[+1]_69 chr2R:23843229-23843349 0.00021 67_[+1]_45 chr3L:4532132-4532252 0.00021 30_[+1]_82 chr3L:12075095-12075215 0.00024 39_[+1]_73 chr3R:20585716-20585836 0.00025 93_[+1]_19 chr2R:11384145-11384265 0.00025 67_[+1]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWCAGCTG width=8 seqs=48 chr2L:2009720-2009840 ( 76) AACAGCTG 1 chr2R:21025064-21025184 ( 45) AACAGCTG 1 chr3R:30459208-30459328 ( 35) AACAGCTG 1 chr2R:12423494-12423614 ( 46) AACAGCTG 1 chr2R:23693916-23694036 ( 75) AACAGCTG 1 chr3L:1884869-1884989 ( 30) AACAGCTG 1 chr3R:22747549-22747669 ( 24) AACAGCTG 1 chr3R:25335177-25335297 ( 45) AACAGCTG 1 chr2R:6871301-6871421 ( 73) AACAGCTG 1 chr2R:10110886-10111006 ( 12) AACAGCTG 1 chr2L:15275081-15275201 ( 90) AACAGCTG 1 chr2R:12321171-12321291 ( 52) AACAGCTG 1 chr2L:12207683-12207803 ( 101) AACAGCTG 1 chrX:9159918-9160038 ( 33) AACAGCTG 1 chr2R:23560435-23560555 ( 52) AACAGCTG 1 chr3L:15498880-15499000 ( 65) ATCAGCTG 1 chr3R:10045466-10045586 ( 53) ATCAGCTG 1 chr3R:13088522-13088642 ( 104) ATCAGCTG 1 chr2L:4465118-4465238 ( 48) ATCAGCTG 1 chr3L:19845199-19845319 ( 55) ATCAGCTG 1 chr3R:29935869-29935989 ( 10) ATCAGCTG 1 chr3R:27228503-27228623 ( 11) ATCAGCTG 1 chrX:8477920-8478040 ( 63) ATCAGCTG 1 chr2R:16143113-16143233 ( 25) ACCAGCTG 1 chr2R:15537940-15538060 ( 73) ACCAGCTG 1 chr3R:22365971-22366091 ( 30) ACCAGCTG 1 chr2L:3059297-3059417 ( 95) ACCAGCTG 1 chr2R:12184247-12184367 ( 38) CACAGCTG 1 chr2L:10342608-10342728 ( 110) CTCAGCTG 1 chr3L:11623658-11623778 ( 62) CTCAGCTG 1 chrX:3570417-3570537 ( 48) AAAAGCTG 1 chr3L:343002-343122 ( 10) AAAAGCTG 1 chr2R:18553786-18553906 ( 97) AAAAGCTG 1 chrX:13109863-13109983 ( 72) ATAAGCTG 1 chrX:8473459-8473579 ( 32) ATAAGCTG 1 chr3L:18026045-18026165 ( 54) GTCAGCTG 1 chr2R:9846509-9846629 ( 11) AATAGCTG 1 chr2L:10802414-10802534 ( 16) ATCAGGTG 1 chr2L:19432547-19432667 ( 34) GTCAGCTG 1 chr2R:7256266-7256386 ( 102) AATAGCTG 1 chr3L:8685448-8685568 ( 69) ATTAGCTG 1 chr2L:4043183-4043303 ( 63) ATTAGCTG 1 chrX:17149026-17149146 ( 44) AACAACTG 1 chr2R:23843229-23843349 ( 68) ATCAACTG 1 chr3L:4532132-4532252 ( 31) ATCAACTG 1 chr3L:12075095-12075215 ( 40) ATCAGCCG 1 chr3R:20585716-20585836 ( 94) ACCAGGTG 1 chr2R:11384145-11384265 ( 68) ACCAGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.64666 E= 2.1e-014 156 -164 -222 -1223 59 -64 -1223 45 -155 206 -1223 -188 172 -1223 -1223 -1223 -228 -1223 227 -1223 -1223 226 -164 -1223 -1223 -323 -1223 168 -1223 -1223 236 -1223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 2.1e-014 0.895833 0.062500 0.041667 0.000000 0.458333 0.125000 0.000000 0.416667 0.104167 0.812500 0.000000 0.083333 1.000000 0.000000 0.000000 0.000000 0.062500 0.000000 0.937500 0.000000 0.000000 0.937500 0.062500 0.000000 0.000000 0.020833 0.000000 0.979167 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-1 regular expression -------------------------------------------------------------------------------- A[AT]CAGCTG -------------------------------------------------------------------------------- Time 7.59 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCAGCWS MEME-2 width = 8 sites = 27 llr = 247 E-value = 8.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCAGCWS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::7::6: pos.-specific C :1a::a:6 probability G a6::a::4 matrix T :3:3::4: bits 2.4 * * ** 2.1 * * ** 1.9 * * ** 1.7 * * ** Relative 1.4 * * ** * Entropy 1.2 * * ** * (13.2 bits) 0.9 ****** * 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCAGCAC consensus T T TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGCWS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11483441-11483561 91 5.00e-06 TTGGCCATCT GGCAGCAC TGGTCAAAAG chrX:11485209-11485329 3 5.00e-06 CT GGCAGCAC GGTCAACTAG chr3R:22747549-22747669 105 5.00e-06 TGTTGGGTGT GGCAGCAC TGGCTGat chrX:11891933-11892053 51 5.00e-06 AGTGCGATCT GGCAGCAC CGCTCAGAAC chrX:8442280-8442400 99 5.00e-06 AAGCGGATGT GGCAGCAC TGGCAGCTCG chr3R:27228503-27228623 106 9.98e-06 TTTAATGCCA GGCAGCAG ATGGTAA chrX:8477920-8478040 15 9.98e-06 CAGAATTATG GGCAGCAG AACTACAAGC chr2R:12423494-12423614 14 1.50e-05 AAAATAATCT GGCAGCTC TTGCAACCTT chr3L:20427628-20427748 56 1.50e-05 TATTCCGATT GGCAGCTC GATAGTCCAC chrX:19845849-19845969 53 2.00e-05 gcaaatcaga ggcagCTG GGCGTGTTAC chr3L:2244203-2244323 2 2.51e-05 G GGCTGCAC GTATCTGCGG chr3L:2481583-2481703 12 2.51e-05 AGTTTCATAT GGCTGCAC TGGCAAAAAA chr2R:13437788-13437908 59 3.80e-05 AGTTGATTTC GGCTGCAG CGTGTCATCG chrX:13401373-13401493 101 3.80e-05 TCATTAAATA GTCAGCAC AAAAGTATGC chr2R:11384145-11384265 100 3.80e-05 GCATTTGGCG GTCAGCAC GATCGCGTAG chrX:15991871-15991991 103 3.80e-05 GACTTTAGTG GGCTGCAG CCTATCACTA chr2R:23560435-23560555 84 4.30e-05 CAGCTGTTGT GGCTGCTC CGCGAAAATT chr2R:7989136-7989256 88 5.09e-05 AGGAATCAAG GTCAGCAG CGAGTGCGCG chr3L:14605426-14605546 45 5.59e-05 CCTTTACATC GCCAGCAC AAAATAGAAT chr3L:19349890-19350010 58 6.89e-05 CCTACTTTTA GGCTGCTG CAACTATCCA chr3R:30459208-30459328 55 8.18e-05 CTCCCACGCA GTCAGCTG TGTGCGATTG chr3L:1884869-1884989 42 8.18e-05 CAGCTGATAA GTCAGCTG ATATCGGGGA chr2R:12321171-12321291 29 8.18e-05 AACTCCAGCC GTCAGCTG GTACTTACCT chr3R:27165542-27165662 112 8.69e-05 TTCTGTAGCA GCCAGCTC T chr2R:10617641-10617761 79 9.80e-05 CGTTCCGATC GTCTGCAC CGATTCCTTT chr3R:31743423-31743543 6 9.80e-05 AGGTT GGCAGCCC TGGTTTGGGC chr3R:10045466-10045586 31 1.03e-04 TAAAAGCATG GCCAGCTG TTATATGTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGCWS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11483441-11483561 5e-06 90_[+2]_22 chrX:11485209-11485329 5e-06 2_[+2]_110 chr3R:22747549-22747669 5e-06 104_[+2]_8 chrX:11891933-11892053 5e-06 50_[+2]_62 chrX:8442280-8442400 5e-06 98_[+2]_14 chr3R:27228503-27228623 1e-05 105_[+2]_7 chrX:8477920-8478040 1e-05 14_[+2]_98 chr2R:12423494-12423614 1.5e-05 13_[+2]_99 chr3L:20427628-20427748 1.5e-05 55_[+2]_57 chrX:19845849-19845969 2e-05 52_[+2]_60 chr3L:2244203-2244323 2.5e-05 1_[+2]_111 chr3L:2481583-2481703 2.5e-05 11_[+2]_101 chr2R:13437788-13437908 3.8e-05 58_[+2]_54 chrX:13401373-13401493 3.8e-05 100_[+2]_12 chr2R:11384145-11384265 3.8e-05 99_[+2]_13 chrX:15991871-15991991 3.8e-05 102_[+2]_10 chr2R:23560435-23560555 4.3e-05 83_[+2]_29 chr2R:7989136-7989256 5.1e-05 87_[+2]_25 chr3L:14605426-14605546 5.6e-05 44_[+2]_68 chr3L:19349890-19350010 6.9e-05 57_[+2]_55 chr3R:30459208-30459328 8.2e-05 54_[+2]_58 chr3L:1884869-1884989 8.2e-05 41_[+2]_71 chr2R:12321171-12321291 8.2e-05 28_[+2]_84 chr3R:27165542-27165662 8.7e-05 111_[+2]_1 chr2R:10617641-10617761 9.8e-05 78_[+2]_34 chr3R:31743423-31743543 9.8e-05 5_[+2]_107 chr3R:10045466-10045586 0.0001 30_[+2]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGCWS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCAGCWS width=8 seqs=27 chrX:11483441-11483561 ( 91) GGCAGCAC 1 chrX:11485209-11485329 ( 3) GGCAGCAC 1 chr3R:22747549-22747669 ( 105) GGCAGCAC 1 chrX:11891933-11892053 ( 51) GGCAGCAC 1 chrX:8442280-8442400 ( 99) GGCAGCAC 1 chr3R:27228503-27228623 ( 106) GGCAGCAG 1 chrX:8477920-8478040 ( 15) GGCAGCAG 1 chr2R:12423494-12423614 ( 14) GGCAGCTC 1 chr3L:20427628-20427748 ( 56) GGCAGCTC 1 chrX:19845849-19845969 ( 53) GGCAGCTG 1 chr3L:2244203-2244323 ( 2) GGCTGCAC 1 chr3L:2481583-2481703 ( 12) GGCTGCAC 1 chr2R:13437788-13437908 ( 59) GGCTGCAG 1 chrX:13401373-13401493 ( 101) GTCAGCAC 1 chr2R:11384145-11384265 ( 100) GTCAGCAC 1 chrX:15991871-15991991 ( 103) GGCTGCAG 1 chr2R:23560435-23560555 ( 84) GGCTGCTC 1 chr2R:7989136-7989256 ( 88) GTCAGCAG 1 chr3L:14605426-14605546 ( 45) GCCAGCAC 1 chr3L:19349890-19350010 ( 58) GGCTGCTG 1 chr3R:30459208-30459328 ( 55) GTCAGCTG 1 chr3L:1884869-1884989 ( 42) GTCAGCTG 1 chr2R:12321171-12321291 ( 29) GTCAGCTG 1 chr3R:27165542-27165662 ( 112) GCCAGCTC 1 chr2R:10617641-10617761 ( 79) GTCTGCAC 1 chr3R:31743423-31743543 ( 6) GGCAGCCC 1 chr3R:10045466-10045586 ( 31) GCCAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGCWS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6812 E= 8.3e-001 -1140 -1140 236 -1140 -1140 -81 170 -24 -1140 236 -1140 -1140 128 -1140 -1140 -24 -1140 -1140 236 -1140 -1140 236 -1140 -1140 96 -240 -1140 28 -1140 160 107 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGCWS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 8.3e-001 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.629630 0.259259 0.000000 1.000000 0.000000 0.000000 0.740741 0.000000 0.000000 0.259259 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.592593 0.037037 0.000000 0.370370 0.000000 0.592593 0.407407 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGCWS MEME-2 regular expression -------------------------------------------------------------------------------- G[GT]C[AT]GC[AT][CG] -------------------------------------------------------------------------------- Time 13.81 secs. ******************************************************************************** ******************************************************************************** MOTIF YTATCGAT MEME-3 width = 8 sites = 25 llr = 230 E-value = 4.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTATCGAT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a:::8: pos.-specific C 6:::a::: probability G :::::a2: matrix T 4a:a::1a bits 2.4 ** 2.1 ** 1.9 ** 1.7 ***** Relative 1.4 ***** * Entropy 1.2 ****** * (13.3 bits) 0.9 ****** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTATCGAT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTATCGAT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12145656-12145776 4 1.95e-05 CAC CTATCGAT ATACAGATAA chrX:19616104-19616224 80 1.95e-05 ATGTTGCGTG CTATCGAT AGACGGTGGA chr3R:30459208-30459328 95 1.95e-05 CATCGACGTC CTATCGAT ACTAATCGAT chr3R:10045466-10045586 70 1.95e-05 GTTCGTTATG CTATCGAT AAGTTATTGG chr2L:19049020-19049140 110 1.95e-05 GTCAATAGTG CTATCGAT GAG chr2L:19756861-19756981 78 1.95e-05 CAGTGACCAG CTATCGAT AGCAGTTCTA chrX:2145272-2145392 34 1.95e-05 TGTGGCGCGA CTATCGAT CGACGAGCTG chrX:9159918-9160038 60 1.95e-05 GGCCTGCTGG CTATCGAT ACTCGCTATC chrX:8489672-8489792 92 1.95e-05 TTATCGCCGT CTATCGAT GACACCGATA chr3L:8121735-8121855 22 5.02e-05 TTAAGTAGAG TTATCGAT AAGAGCGTCC chrX:11485209-11485329 25 5.02e-05 AACTAGTCCG TTATCGAT TGGCAGCGAT chr2R:23693916-23694036 18 5.02e-05 TACCGCCCCG TTATCGAT ATCAGCTGCA chrX:15732051-15732171 91 5.02e-05 CCGATCGACA TTATCGAT TGTGACATCG chrX:16313170-16313290 42 5.02e-05 AAGCCTTTTG TTATCGAT AACAAAACTT chrX:5876776-5876896 104 5.02e-05 TAATCGGTGG TTATCGAT GTACAATAC chr2L:6476961-6477081 10 5.02e-05 AGCTATCGT TTATCGAT TGTTTCGCTA chr2R:12321171-12321291 11 5.02e-05 GCGGCTTGAA TTATCGAT AACTCCAGCC chr3R:29935869-29935989 57 5.02e-05 ACAGGTTAAT TTATCGAT TGCCAATTCG chr3R:12456481-12456601 55 6.27e-05 CCATGTGCAA CTATCGGT TGTCTGCCCA chrX:13401373-13401493 59 6.27e-05 TAAGCGCCAT CTATCGGT TGGTAGCGGA chr3R:21130154-21130274 33 6.27e-05 GTGTGACCAG CTATCGGT AATCTGGATG chr2L:2009720-2009840 29 8.22e-05 CGTGTGTGCT TTATCGGT GTTGTGGTTG chr2R:9143846-9143966 73 1.02e-04 TTGCCGTCCC CTATCGTT ATCGCCTTTG chr3L:19845199-19845319 19 1.02e-04 ATGTAGTGGG CTATCGTT TAACCATCGT chrX:11483441-11483561 12 1.14e-04 TGGTATATAA CTATCGAC CCTCGGCCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTATCGAT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12145656-12145776 2e-05 3_[+3]_109 chrX:19616104-19616224 2e-05 79_[+3]_33 chr3R:30459208-30459328 2e-05 94_[+3]_18 chr3R:10045466-10045586 2e-05 69_[+3]_43 chr2L:19049020-19049140 2e-05 109_[+3]_3 chr2L:19756861-19756981 2e-05 77_[+3]_35 chrX:2145272-2145392 2e-05 33_[+3]_79 chrX:9159918-9160038 2e-05 59_[+3]_53 chrX:8489672-8489792 2e-05 91_[+3]_21 chr3L:8121735-8121855 5e-05 21_[+3]_91 chrX:11485209-11485329 5e-05 24_[+3]_88 chr2R:23693916-23694036 5e-05 17_[+3]_95 chrX:15732051-15732171 5e-05 90_[+3]_22 chrX:16313170-16313290 5e-05 41_[+3]_71 chrX:5876776-5876896 5e-05 103_[+3]_9 chr2L:6476961-6477081 5e-05 9_[+3]_103 chr2R:12321171-12321291 5e-05 10_[+3]_102 chr3R:29935869-29935989 5e-05 56_[+3]_56 chr3R:12456481-12456601 6.3e-05 54_[+3]_58 chrX:13401373-13401493 6.3e-05 58_[+3]_54 chr3R:21130154-21130274 6.3e-05 32_[+3]_80 chr2L:2009720-2009840 8.2e-05 28_[+3]_84 chr2R:9143846-9143966 0.0001 72_[+3]_40 chr3L:19845199-19845319 0.0001 18_[+3]_94 chrX:11483441-11483561 0.00011 11_[+3]_101 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTATCGAT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTATCGAT width=8 seqs=25 chr2R:12145656-12145776 ( 4) CTATCGAT 1 chrX:19616104-19616224 ( 80) CTATCGAT 1 chr3R:30459208-30459328 ( 95) CTATCGAT 1 chr3R:10045466-10045586 ( 70) CTATCGAT 1 chr2L:19049020-19049140 ( 110) CTATCGAT 1 chr2L:19756861-19756981 ( 78) CTATCGAT 1 chrX:2145272-2145392 ( 34) CTATCGAT 1 chrX:9159918-9160038 ( 60) CTATCGAT 1 chrX:8489672-8489792 ( 92) CTATCGAT 1 chr3L:8121735-8121855 ( 22) TTATCGAT 1 chrX:11485209-11485329 ( 25) TTATCGAT 1 chr2R:23693916-23694036 ( 18) TTATCGAT 1 chrX:15732051-15732171 ( 91) TTATCGAT 1 chrX:16313170-16313290 ( 42) TTATCGAT 1 chrX:5876776-5876896 ( 104) TTATCGAT 1 chr2L:6476961-6477081 ( 10) TTATCGAT 1 chr2R:12321171-12321291 ( 11) TTATCGAT 1 chr3R:29935869-29935989 ( 57) TTATCGAT 1 chr3R:12456481-12456601 ( 55) CTATCGGT 1 chrX:13401373-13401493 ( 59) CTATCGGT 1 chr3R:21130154-21130274 ( 33) CTATCGGT 1 chr2L:2009720-2009840 ( 29) TTATCGGT 1 chr2R:9143846-9143966 ( 73) CTATCGTT 1 chr3L:19845199-19845319 ( 19) CTATCGTT 1 chrX:11483441-11483561 ( 12) CTATCGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTATCGAT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.84894 E= 4.7e+001 -1129 162 -1129 39 -1129 -1129 -1129 171 172 -1129 -1129 -1129 -1129 -1129 -1129 171 -1129 236 -1129 -1129 -1129 -1129 236 -1129 132 -1129 -28 -193 -1129 -228 -1129 165 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTATCGAT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 4.7e+001 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.760000 0.000000 0.160000 0.080000 0.000000 0.040000 0.000000 0.960000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTATCGAT MEME-3 regular expression -------------------------------------------------------------------------------- [CT]TATCGAT -------------------------------------------------------------------------------- Time 19.96 secs. ******************************************************************************** ******************************************************************************** MOTIF GSCRGCGA MEME-4 width = 8 sites = 27 llr = 237 E-value = 3.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSCRGCGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::4:::7 pos.-specific C 158::a1: probability G 6526a:93 matrix T 3::::::: bits 2.4 ** 2.1 ** 1.9 *** 1.7 * *** Relative 1.4 ** *** Entropy 1.2 ****** (12.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCGGCGA consensus TGGA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCRGCGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7256266-7256386 55 3.19e-06 CGCTGAAATC GCCGGCGA CAATAACAAT chr3L:19349890-19350010 27 6.37e-06 TTGCTCTTCC GGCGGCGA AGATAAAATG chrX:5916274-5916394 64 6.37e-06 GTTGTTTTTT GGCGGCGA TGCGAGTTAA chr3R:27228503-27228623 34 8.41e-06 GAAAGCTCCA GCCGGCGG TGGGTAGCCA chrX:11485209-11485329 34 2.04e-05 GTTATCGATT GGCAGCGA TAACGATTGA chr3R:27561287-27561407 12 2.04e-05 ACCTCACGAC GGCAGCGA ACCAACTGCA chrX:8479170-8479290 107 2.04e-05 GGCCATGGCG GGCAGCGA TTATAG chrX:8481601-8481721 69 2.04e-05 GATATGCGCT GGCAGCGA TGCGTGCGAT chr2R:19125776-19125896 9 2.86e-05 CAAAGTCG GCGGGCGA AACGAATCGG chr2L:20831192-20831312 36 2.86e-05 TCTATAAAAG TCCGGCGA CAAAGCCAAC chr3R:31986912-31987032 53 4.00e-05 AGCCACAAAC GCCAGCGG GAGCAGTTCG chr3L:8694039-8694159 110 4.00e-05 TCGTGGAATT TGCGGCGA CAT chrX:6641724-6641844 38 4.00e-05 AACCACTATA GGGGGCGA GCAAAAGGTG chr2R:17019324-17019444 58 5.36e-05 TGGACGGTGC GGGGGCGG GACGGCCGGT chrX:22487087-22487207 60 5.36e-05 CCCTGAAAGC TGCGGCGG ATTGCCAAAA chrX:16423267-16423387 24 5.36e-05 TGTGCGACGC Tgcggcgg caacagcgac chr3L:18026045-18026165 91 7.29e-05 TTTTTTTGGG GCCGGCCA TGTGGCTACA chr2R:7989136-7989256 103 7.29e-05 CAGCGAGTGC GCGAGCGA GAGAGGGCGA chr2R:23843229-23843349 56 7.29e-05 AAAAGAGCTT TCCAGCGA TGGTATCAAC chr2L:19756861-19756981 14 7.29e-05 GAACGAAACG TCCAGCGA GACACAACAA chrX:2714941-2715061 62 7.29e-05 CAGCGCCCAT GCCGGCCA GTCAATCCGA chr2R:7458817-7458937 37 9.21e-05 GGCAAAAGTT CGCGGCGA ATGACTCGGC chr3L:2772114-2772234 84 9.71e-05 CCGTCGGCTT TCGGGCGA CGTTGTTTGT chrX:17842025-17842145 80 1.14e-04 CACCCTGCAG TCCAGCGG CGTTTTCCAC chr2R:8906756-8906876 53 1.14e-04 GAAACCGATG CCCGGCGG ACTCCTCGCA chr2L:4465118-4465238 70 1.27e-04 TTGTTTATGT GGGAGCGG CCTGAGAAAT chrX:15701229-15701349 14 1.40e-04 CAGCTGAGCG GCCAGCCA GGGATGTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCRGCGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7256266-7256386 3.2e-06 54_[+4]_58 chr3L:19349890-19350010 6.4e-06 26_[+4]_86 chrX:5916274-5916394 6.4e-06 63_[+4]_49 chr3R:27228503-27228623 8.4e-06 33_[+4]_79 chrX:11485209-11485329 2e-05 33_[+4]_79 chr3R:27561287-27561407 2e-05 11_[+4]_101 chrX:8479170-8479290 2e-05 106_[+4]_6 chrX:8481601-8481721 2e-05 68_[+4]_44 chr2R:19125776-19125896 2.9e-05 8_[+4]_104 chr2L:20831192-20831312 2.9e-05 35_[+4]_77 chr3R:31986912-31987032 4e-05 52_[+4]_60 chr3L:8694039-8694159 4e-05 109_[+4]_3 chrX:6641724-6641844 4e-05 37_[+4]_75 chr2R:17019324-17019444 5.4e-05 57_[+4]_55 chrX:22487087-22487207 5.4e-05 59_[+4]_53 chrX:16423267-16423387 5.4e-05 23_[+4]_89 chr3L:18026045-18026165 7.3e-05 90_[+4]_22 chr2R:7989136-7989256 7.3e-05 102_[+4]_10 chr2R:23843229-23843349 7.3e-05 55_[+4]_57 chr2L:19756861-19756981 7.3e-05 13_[+4]_99 chrX:2714941-2715061 7.3e-05 61_[+4]_51 chr2R:7458817-7458937 9.2e-05 36_[+4]_76 chr3L:2772114-2772234 9.7e-05 83_[+4]_29 chrX:17842025-17842145 0.00011 79_[+4]_33 chr2R:8906756-8906876 0.00011 52_[+4]_60 chr2L:4465118-4465238 0.00013 69_[+4]_43 chrX:15701229-15701349 0.00014 13_[+4]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCRGCGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSCRGCGA width=8 seqs=27 chr2R:7256266-7256386 ( 55) GCCGGCGA 1 chr3L:19349890-19350010 ( 27) GGCGGCGA 1 chrX:5916274-5916394 ( 64) GGCGGCGA 1 chr3R:27228503-27228623 ( 34) GCCGGCGG 1 chrX:11485209-11485329 ( 34) GGCAGCGA 1 chr3R:27561287-27561407 ( 12) GGCAGCGA 1 chrX:8479170-8479290 ( 107) GGCAGCGA 1 chrX:8481601-8481721 ( 69) GGCAGCGA 1 chr2R:19125776-19125896 ( 9) GCGGGCGA 1 chr2L:20831192-20831312 ( 36) TCCGGCGA 1 chr3R:31986912-31987032 ( 53) GCCAGCGG 1 chr3L:8694039-8694159 ( 110) TGCGGCGA 1 chrX:6641724-6641844 ( 38) GGGGGCGA 1 chr2R:17019324-17019444 ( 58) GGGGGCGG 1 chrX:22487087-22487207 ( 60) TGCGGCGG 1 chrX:16423267-16423387 ( 24) TGCGGCGG 1 chr3L:18026045-18026165 ( 91) GCCGGCCA 1 chr2R:7989136-7989256 ( 103) GCGAGCGA 1 chr2R:23843229-23843349 ( 56) TCCAGCGA 1 chr2L:19756861-19756981 ( 14) TCCAGCGA 1 chrX:2714941-2715061 ( 62) GCCGGCCA 1 chr2R:7458817-7458937 ( 37) CGCGGCGA 1 chr3L:2772114-2772234 ( 84) TCGGGCGA 1 chrX:17842025-17842145 ( 80) TCCAGCGG 1 chr2R:8906756-8906876 ( 53) CCCGGCGG 1 chr2L:4465118-4465238 ( 70) GGGAGCGG 1 chrX:15701229-15701349 ( 14) GCCAGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCRGCGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6812 E= 3.6e+004 -1140 -140 170 -5 -1140 141 131 -1140 -1140 199 19 -1140 42 -1140 161 -1140 -1140 -1140 236 -1140 -1140 236 -1140 -1140 -1140 -81 219 -1140 121 -1140 61 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCRGCGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 3.6e+004 0.000000 0.074074 0.629630 0.296296 0.000000 0.518519 0.481481 0.000000 0.000000 0.777778 0.222222 0.000000 0.407407 0.000000 0.592593 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.703704 0.000000 0.296296 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCRGCGA MEME-4 regular expression -------------------------------------------------------------------------------- [GT][CG][CG][GA]GCG[AG] -------------------------------------------------------------------------------- Time 26.06 secs. ******************************************************************************** ******************************************************************************** MOTIF GCSAVAGC MEME-5 width = 8 sites = 27 llr = 240 E-value = 5.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCSAVAGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::2a46:: pos.-specific C :a5:32:a probability G a:3:3:a: matrix T :::::3:: bits 2.4 ** ** 2.1 ** ** 1.9 ** ** 1.7 ** * ** Relative 1.4 ** * ** Entropy 1.2 ** * ** (12.8 bits) 0.9 ** * ** 0.7 **** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCAAAGC consensus G GT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSAVAGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7339491-7339611 105 1.28e-05 TTAATTTGCA GCCAAAGC CCGCTGCC chr2L:2009720-2009840 12 1.28e-05 ATTTAACTAA GCCAAAGC GTGTGTGCTT chr3L:18026045-18026165 14 1.28e-05 AACGCGGGGC GCCAAAGC CGAAATGCAG chrX:17842025-17842145 53 1.28e-05 TTTTTAAATG GCCAGAGC CAGAGTTGCC chrX:11359193-11359313 24 1.28e-05 CGATAAGCAC GCCAAAGC AAACTATCGC chr2R:16673043-16673163 67 1.28e-05 CCCATAGATG GCCAAAGC ATATCTGATG chrX:16423267-16423387 106 1.79e-05 agcattggag gccacagc gacacag chr2R:13437788-13437908 15 3.07e-05 CATTTCTCAA GCGAGAGC GCACTAGTCT chr3L:4532132-4532252 88 3.07e-05 AGAGCTTAAA GCGAAAGC CGAGCTTTTG chr2R:11384145-11384265 27 3.07e-05 GGCAGATTTG GCGAGAGC AAGAAGACCG chr3R:27228503-27228623 22 3.07e-05 TCAGCTGACT GCGAAAGC TCCAGCCGGC chr3L:12075095-12075215 79 3.57e-05 GTTTCACCTG GCGACAGC GAAAATTCCG chrX:658176-658296 18 4.39e-05 TGAAATGCGC GCCAACGC ATGTTCTCAT chr2R:23560435-23560555 16 4.39e-05 TTACGTCTTA GCCAGCGC CCACTGTACT chr2R:24959630-24959750 45 6.00e-05 ATTTACAATG GCCAATGC CACCTTTCAA chrX:8442280-8442400 55 6.00e-05 CAAAAGTGTG GCCACCGC ATAAGCGCCA chr3R:13088522-13088642 60 6.51e-05 AAAGGTGTGC GCCACTGC TACTTCCCAG chr3R:11813232-11813352 72 6.51e-05 TTGGATTGGA GCCACTGC TTATCACCAG chrX:6090962-6091082 56 7.33e-05 ACTGTATTAA GCGAGCGC TGTTAACTGT chr2R:10045482-10045602 101 7.33e-05 Caagcaacaa gcgaacgc acgataaaag chrX:8242490-8242610 87 8.94e-05 TCGTGCTTTC GCGAGTGC CGAGAGCCGC chr3L:8694039-8694159 14 9.44e-05 CATAGACCAC GCGACTGC AGCTGAATTC chr3L:11623658-11623778 91 1.14e-04 TATACGCACC GCAAAAGC TTGTTCGAAA chrX:19845849-19845969 26 1.14e-04 gcagaaagaa gcaaaagc acaagcaaag chrX:15308599-15308719 67 1.22e-04 ATAAAAATGT GCAACAGC AAAATAAACT chr2R:16143113-16143233 66 1.60e-04 TGCCGCATTT GCAAGTGC AGAAGCGACT chr2L:9487618-9487738 113 1.60e-04 GAATTTTAAT GCAAGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSAVAGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7339491-7339611 1.3e-05 104_[+5]_8 chr2L:2009720-2009840 1.3e-05 11_[+5]_101 chr3L:18026045-18026165 1.3e-05 13_[+5]_99 chrX:17842025-17842145 1.3e-05 52_[+5]_60 chrX:11359193-11359313 1.3e-05 23_[+5]_89 chr2R:16673043-16673163 1.3e-05 66_[+5]_46 chrX:16423267-16423387 1.8e-05 105_[+5]_7 chr2R:13437788-13437908 3.1e-05 14_[+5]_98 chr3L:4532132-4532252 3.1e-05 87_[+5]_25 chr2R:11384145-11384265 3.1e-05 26_[+5]_86 chr3R:27228503-27228623 3.1e-05 21_[+5]_91 chr3L:12075095-12075215 3.6e-05 78_[+5]_34 chrX:658176-658296 4.4e-05 17_[+5]_95 chr2R:23560435-23560555 4.4e-05 15_[+5]_97 chr2R:24959630-24959750 6e-05 44_[+5]_68 chrX:8442280-8442400 6e-05 54_[+5]_58 chr3R:13088522-13088642 6.5e-05 59_[+5]_53 chr3R:11813232-11813352 6.5e-05 71_[+5]_41 chrX:6090962-6091082 7.3e-05 55_[+5]_57 chr2R:10045482-10045602 7.3e-05 100_[+5]_12 chrX:8242490-8242610 8.9e-05 86_[+5]_26 chr3L:8694039-8694159 9.4e-05 13_[+5]_99 chr3L:11623658-11623778 0.00011 90_[+5]_22 chrX:19845849-19845969 0.00011 25_[+5]_87 chrX:15308599-15308719 0.00012 66_[+5]_46 chr2R:16143113-16143233 0.00016 65_[+5]_47 chr2L:9487618-9487738 0.00016 112_[+5] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSAVAGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCSAVAGC width=8 seqs=27 chr3L:7339491-7339611 ( 105) GCCAAAGC 1 chr2L:2009720-2009840 ( 12) GCCAAAGC 1 chr3L:18026045-18026165 ( 14) GCCAAAGC 1 chrX:17842025-17842145 ( 53) GCCAGAGC 1 chrX:11359193-11359313 ( 24) GCCAAAGC 1 chr2R:16673043-16673163 ( 67) GCCAAAGC 1 chrX:16423267-16423387 ( 106) GCCACAGC 1 chr2R:13437788-13437908 ( 15) GCGAGAGC 1 chr3L:4532132-4532252 ( 88) GCGAAAGC 1 chr2R:11384145-11384265 ( 27) GCGAGAGC 1 chr3R:27228503-27228623 ( 22) GCGAAAGC 1 chr3L:12075095-12075215 ( 79) GCGACAGC 1 chrX:658176-658296 ( 18) GCCAACGC 1 chr2R:23560435-23560555 ( 16) GCCAGCGC 1 chr2R:24959630-24959750 ( 45) GCCAATGC 1 chrX:8442280-8442400 ( 55) GCCACCGC 1 chr3R:13088522-13088642 ( 60) GCCACTGC 1 chr3R:11813232-11813352 ( 72) GCCACTGC 1 chrX:6090962-6091082 ( 56) GCGAGCGC 1 chr2R:10045482-10045602 ( 101) GCGAACGC 1 chrX:8242490-8242610 ( 87) GCGAGTGC 1 chr3L:8694039-8694159 ( 14) GCGACTGC 1 chr3L:11623658-11623778 ( 91) GCAAAAGC 1 chrX:19845849-19845969 ( 26) GCAAAAGC 1 chrX:15308599-15308719 ( 67) GCAACAGC 1 chr2R:16143113-16143233 ( 66) GCAAGTGC 1 chr2L:9487618-9487738 ( 113) GCAAGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSAVAGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6812 E= 5.9e+002 -1140 -1140 236 -1140 -1140 236 -1140 -1140 -72 130 78 -1140 172 -1140 -1140 -1140 55 41 61 -1140 87 -8 -1140 -24 -1140 -1140 236 -1140 -1140 236 -1140 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSAVAGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 5.9e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.185185 0.481481 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.444444 0.259259 0.296296 0.000000 0.555556 0.185185 0.000000 0.259259 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSAVAGC MEME-5 regular expression -------------------------------------------------------------------------------- GC[CG]A[AGC][AT]GC -------------------------------------------------------------------------------- Time 32.10 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8481601-8481721 6.25e-02 68_[+4(2.04e-05)]_44 chrX:8473459-8473579 3.97e-01 120 chrX:8484917-8485037 2.12e-01 120 chrX:8479170-8479290 1.21e-02 93_[+4(7.29e-05)]_5_[+4(2.04e-05)]_\ 6 chrX:8472076-8472196 8.55e-01 120 chrX:8470467-8470587 9.12e-02 120 chr3R:22816564-22816684 9.98e-01 120 chrX:7873533-7873653 2.71e-01 120 chr2R:13550385-13550505 9.69e-01 120 chrX:3667392-3667512 7.07e-01 120 chrX:11373440-11373560 9.90e-01 120 chrX:14501153-14501273 9.29e-01 120 chrX:8477920-8478040 1.08e-04 14_[+2(9.98e-06)]_40_[+1(2.47e-05)]_\ 32_[+1(2.47e-05)]_10 chrX:8476082-8476202 1.65e-01 120 chr2L:9487618-9487738 2.77e-01 120 chrX:8483699-8483819 4.66e-02 120 chr3R:25735792-25735912 3.44e-02 120 chrX:10362671-10362791 8.74e-01 120 chr3R:27228503-27228623 1.88e-07 10_[+1(2.47e-05)]_3_[+5(3.07e-05)]_\ 4_[+4(8.41e-06)]_64_[+2(9.98e-06)]_7 chrX:10125799-10125919 9.99e-01 120 chr3L:9552357-9552477 9.97e-01 120 chr2L:2131575-2131695 7.10e-01 120 chrX:13972545-13972665 1.00e+00 120 chrX:9578920-9579040 3.04e-02 120 chrX:6641724-6641844 1.99e-02 37_[+4(4.00e-05)]_75 chr3L:8694039-8694159 3.59e-03 13_[+5(9.44e-05)]_88_[+4(4.00e-05)]_\ 3 chrX:17532390-17532510 2.47e-01 120 chrX:16423267-16423387 2.93e-04 23_[+4(5.36e-05)]_74_[+5(1.79e-05)]_\ 7 chr2R:7256266-7256386 6.10e-04 54_[+4(3.19e-06)]_58 chr3R:30751016-30751136 1.28e-01 120 chr3R:7076705-7076825 1.48e-01 120 chrX:2714941-2715061 5.60e-02 61_[+4(7.29e-05)]_51 chrX:11081948-11082068 5.23e-01 120 chrX:4615787-4615907 1.84e-01 120 chr2L:12271406-12271526 9.95e-01 120 chr3L:6253835-6253955 9.94e-01 120 chrX:9502442-9502562 2.11e-01 120 chr3L:20113010-20113130 5.63e-01 120 chrX:22487087-22487207 9.37e-03 59_[+4(5.36e-05)]_53 chrX:11680538-11680658 5.96e-01 120 chrX:2075992-2076112 9.16e-01 120 chr3R:13061887-13062007 6.52e-01 120 chr3R:14902078-14902198 4.87e-01 120 chrX:11550181-11550301 7.96e-01 120 chr3L:12834757-12834877 1.05e-01 120 chr2R:10045482-10045602 1.99e-02 100_[+5(7.33e-05)]_12 chrX:17588177-17588297 7.05e-01 120 chr3R:14736790-14736910 6.52e-01 120 chr2L:4043183-4043303 2.45e-02 120 chrX:9163265-9163385 2.97e-02 120 chrX:4590597-4590717 9.99e-01 120 chrX:8489672-8489792 1.47e-02 91_[+3(1.95e-05)]_21 chrX:5916274-5916394 8.64e-03 63_[+4(6.37e-06)]_49 chr2R:23560435-23560555 1.45e-05 15_[+5(4.39e-05)]_28_[+1(1.23e-05)]_\ 24_[+2(4.30e-05)]_29 chr3L:9743282-9743402 4.87e-01 120 chr2L:3059297-3059417 5.35e-03 94_[+1(3.26e-05)]_18 chrX:15991871-15991991 1.06e-02 102_[+2(3.80e-05)]_10 chrX:8258424-8258544 4.92e-01 120 chr3R:27561287-27561407 1.23e-03 11_[+4(2.04e-05)]_101 chr2L:13400800-13400920 1.36e-01 120 chrX:9159918-9160038 1.51e-05 32_[+1(1.23e-05)]_19_[+3(1.95e-05)]_\ 53 chr3L:19349890-19350010 2.10e-03 26_[+4(6.37e-06)]_23_[+2(6.89e-05)]_\ 55 chrX:658176-658296 5.36e-02 17_[+5(4.39e-05)]_95 chr2R:11654074-11654194 2.47e-01 120 chr2R:18553786-18553906 3.35e-02 96_[+1(6.76e-05)]_16 chr3R:31986912-31987032 2.36e-03 52_[+4(4.00e-05)]_60 chrX:2196202-2196322 7.07e-02 120 chr3L:8685448-8685568 1.41e-01 120 chrX:1819177-1819297 3.09e-01 120 chrX:13734959-13735079 9.92e-01 120 chrX:2145272-2145392 1.30e-02 6_[+3(5.02e-05)]_19_[+3(1.95e-05)]_\ 79 chrX:4614465-4614585 9.25e-01 120 chr3L:11135930-11136050 2.48e-01 120 chr2R:18314468-18314588 2.93e-01 120 chr2L:12207683-12207803 1.20e-03 44_[+1(2.47e-05)]_48_[+1(1.23e-05)]_\ 12 chr3R:29935869-29935989 6.08e-04 9_[+1(2.47e-05)]_39_[+3(5.02e-05)]_\ 56 chr2R:16164035-16164155 1.44e-01 120 chr2R:12321171-12321291 4.56e-06 10_[+3(5.02e-05)]_10_[+2(8.18e-05)]_\ 15_[+1(1.23e-05)]_61 chrX:8260007-8260127 9.27e-01 120 chr2L:10002619-10002739 5.67e-01 120 chr2L:21235794-21235914 7.65e-01 120 chr2L:16537132-16537252 9.09e-01 120 chr2L:19432547-19432667 2.52e-03 33_[+2(8.18e-05)]_79 chrX:8461551-8461671 1.12e-01 120 chrX:19845849-19845969 6.93e-04 52_[+2(2.00e-05)]_60 chr3L:12075095-12075215 1.43e-03 78_[+5(3.57e-05)]_34 chr2R:18857867-18857987 2.02e-01 120 chrX:3390005-3390125 7.25e-01 120 chr3L:16696480-16696600 9.93e-01 120 chr3R:9783339-9783459 6.47e-01 120 chr3R:22365971-22366091 5.42e-03 29_[+1(3.26e-05)]_83 chr2R:5608712-5608832 8.97e-01 120 chr2R:7793097-7793217 3.91e-01 120 chrX:13838419-13838539 8.52e-01 120 chr2R:7458817-7458937 4.21e-02 36_[+4(9.21e-05)]_76 chrX:19701761-19701881 8.17e-01 120 chr3L:3334918-3335038 9.17e-01 120 chr3L:13994458-13994578 9.11e-01 120 chrX:8895089-8895209 9.49e-01 120 chr3R:5694583-5694703 9.06e-01 120 chr2L:15275081-15275201 2.10e-02 73_[+1(2.47e-05)]_8_[+1(1.23e-05)]_\ 23 chr2R:16343629-16343749 9.91e-01 120 chr2L:10802414-10802534 1.67e-01 120 chrX:8442280-8442400 2.87e-04 54_[+5(6.00e-05)]_36_[+2(5.00e-06)]_\ 1_[+2(1.50e-05)]_5 chr2L:4915765-4915885 9.07e-01 120 chr3L:14605426-14605546 4.96e-02 44_[+2(5.59e-05)]_68 chr2L:6476961-6477081 3.24e-02 9_[+3(5.02e-05)]_103 chr2R:11384145-11384265 5.17e-05 26_[+5(3.07e-05)]_65_[+2(3.80e-05)]_\ 13 chr2L:8485725-8485845 4.98e-01 120 chr2R:10110886-10111006 1.29e-02 [+1(3.26e-05)]_3_[+1(1.23e-05)]_101 chr3L:564054-564174 9.98e-01 120 chr2R:6871301-6871421 1.66e-02 72_[+1(1.23e-05)]_40 chr3R:19158153-19158273 9.52e-01 120 chr3L:343002-343122 6.26e-03 9_[+1(6.76e-05)]_103 chr3R:8893137-8893257 6.70e-01 120 chr3L:19869693-19869813 9.82e-01 120 chr3L:4532132-4532252 6.55e-03 87_[+5(3.07e-05)]_25 chrX:14607054-14607174 4.74e-01 120 chr2R:16673043-16673163 7.31e-02 66_[+5(1.28e-05)]_46 chrX:5876776-5876896 2.42e-01 103_[+3(5.02e-05)]_9 chr3L:18032884-18033004 6.64e-01 120 chrX:7691627-7691747 9.50e-01 120 chrX:8491622-8491742 6.87e-01 120 chrX:17832706-17832826 9.44e-01 120 chr3R:6380342-6380462 8.56e-01 120 chrX:3448153-3448273 4.24e-01 120 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chr2R:6171523-6171643 1.94e-01 120 chr2L:9176885-9177005 8.82e-01 120 chr3L:7970745-7970865 8.96e-01 120 chrX:11483441-11483561 3.05e-04 90_[+2(5.00e-06)]_22 chr3R:9581148-9581268 9.59e-01 120 chr3R:30134179-30134299 4.25e-01 120 chrX:19616104-19616224 1.06e-02 79_[+3(1.95e-05)]_33 chr2L:2009720-2009840 7.94e-06 11_[+5(1.28e-05)]_9_[+3(8.22e-05)]_\ 39_[+1(1.23e-05)]_37 chr2R:9143846-9143966 3.62e-02 120 chr3L:7339491-7339611 1.22e-03 104_[+5(1.28e-05)]_8 chr2R:17019324-17019444 5.78e-02 57_[+4(5.36e-05)]_55 chr2R:10617641-10617761 9.61e-02 78_[+2(9.80e-05)]_34 chr3L:8121735-8121855 7.41e-02 21_[+3(5.02e-05)]_91 chr2R:12145656-12145776 5.52e-02 3_[+3(1.95e-05)]_109 chr3L:652753-652873 3.64e-01 120 chr2R:16581726-16581846 7.15e-01 120 chrX:12663056-12663176 7.43e-01 120 chr2R:18134490-18134610 8.03e-01 120 chr4:466639-466759 6.24e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************