******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/az2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:23977267-23977387 1.0000 120 chr2R:4744179-4744299 1.0000 120 chr2R:12633468-12633588 1.0000 120 chr2R:12537622-12537742 1.0000 120 chr4:959582-959702 1.0000 120 chr3R:26900142-26900262 1.0000 120 chr3R:22039577-22039697 1.0000 120 chr3R:19166401-19166521 1.0000 120 chr3L:14411002-14411122 1.0000 120 chr2L:8554399-8554519 1.0000 120 chr2L:10428704-10428824 1.0000 120 chr3L:16760400-16760520 1.0000 120 chr3R:6791278-6791398 1.0000 120 chr3R:16857125-16857245 1.0000 120 chr3R:20833871-20833991 1.0000 120 chr3R:18242113-18242233 1.0000 120 chr2L:1362365-1362485 1.0000 120 chr3R:16769533-16769653 1.0000 120 chr3L:21047199-21047319 1.0000 120 chr3R:21834388-21834508 1.0000 120 chr3R:9494393-9494513 1.0000 120 chr3R:21200069-21200189 1.0000 120 chr3L:10391152-10391272 1.0000 120 chr3L:13262379-13262499 1.0000 120 chr3L:16054331-16054451 1.0000 120 chrX:13128031-13128151 1.0000 120 chr3R:13549597-13549717 1.0000 120 chr2L:9996715-9996835 1.0000 120 chrX:8837309-8837429 1.0000 120 chr3L:3855335-3855455 1.0000 120 chr2R:23898471-23898591 1.0000 120 chr3R:23387065-23387185 1.0000 120 chr2L:493420-493540 1.0000 120 chr2L:14701639-14701759 1.0000 120 chrX:2011698-2011818 1.0000 120 chr2L:15432383-15432503 1.0000 120 chr2L:14245610-14245730 1.0000 120 chrX:15475535-15475655 1.0000 120 chr2L:6830556-6830676 1.0000 120 chrX:771843-771963 1.0000 120 chrX:19348963-19349083 1.0000 120 chr2L:7566757-7566877 1.0000 120 chr2R:10160295-10160415 1.0000 120 chr2R:13028939-13029059 1.0000 120 chr3L:10428191-10428311 1.0000 120 chr3L:11336546-11336666 1.0000 120 chr3R:10498730-10498850 1.0000 120 chr3L:10849774-10849894 1.0000 120 chr4:959783-959903 1.0000 120 chr2R:11435228-11435348 1.0000 120 chr2L:3805323-3805443 1.0000 120 chr2L:11417693-11417813 1.0000 120 chr2L:11091218-11091338 1.0000 120 chrX:10601773-10601893 1.0000 120 chr2L:19490245-19490365 1.0000 120 chr3L:3875177-3875297 1.0000 120 chr3R:23293558-23293678 1.0000 120 chr3R:19114009-19114129 1.0000 120 chrX:15591991-15592111 1.0000 120 chr3L:630197-630317 1.0000 120 chr2R:19874680-19874800 1.0000 120 chr2L:18694841-18694961 1.0000 120 chrX:10573673-10573793 1.0000 120 chr3L:14166437-14166557 1.0000 120 chr3R:6760774-6760894 1.0000 120 chr2R:9286617-9286737 1.0000 120 chr3R:31687919-31688039 1.0000 120 chr2R:7241746-7241866 1.0000 120 chr2L:18505636-18505756 1.0000 120 chr3R:26235171-26235291 1.0000 120 chrX:7162670-7162790 1.0000 120 chr3L:18250803-18250923 1.0000 120 chr3L:7861903-7862023 1.0000 120 chr2R:14971115-14971235 1.0000 120 chr2R:10438957-10439077 1.0000 120 chr3L:6969352-6969472 1.0000 120 chrX:16103575-16103695 1.0000 120 chrX:12242498-12242618 1.0000 120 chrX:3367395-3367515 1.0000 120 chr3R:30812578-30812698 1.0000 120 chr3R:14470714-14470834 1.0000 120 chr3L:10350858-10350978 1.0000 120 chr2R:15381241-15381361 1.0000 120 chr3L:15693246-15693366 1.0000 120 chr3L:11429828-11429948 1.0000 120 chr3L:10745750-10745870 1.0000 120 chr3R:10641381-10641501 1.0000 120 chr3L:13197594-13197714 1.0000 120 chr3L:13356199-13356319 1.0000 120 chr3R:13799783-13799903 1.0000 120 chr3L:7510862-7510982 1.0000 120 chr3L:7151942-7152062 1.0000 120 chrX:2396593-2396713 1.0000 120 chr3L:907849-907969 1.0000 120 chr2R:11628147-11628267 1.0000 120 chr2L:3472383-3472503 1.0000 120 chr4:406922-407042 1.0000 120 chr3L:6817102-6817222 1.0000 120 chrX:7617030-7617150 1.0000 120 chrX:20507911-20508031 1.0000 120 chr2R:16096959-16097079 1.0000 120 chr3L:8751416-8751536 1.0000 120 chr2R:16800200-16800320 1.0000 120 chr3L:18782221-18782341 1.0000 120 chr2R:21709620-21709740 1.0000 120 chr3R:5636882-5637002 1.0000 120 chr3L:11074611-11074731 1.0000 120 chr3R:8171638-8171758 1.0000 120 chr2R:12274337-12274457 1.0000 120 chr2R:21527402-21527522 1.0000 120 chr3L:3852979-3853099 1.0000 120 chr2L:19377544-19377664 1.0000 120 chr3R:16748688-16748808 1.0000 120 chrX:7571328-7571448 1.0000 120 chr3L:10899358-10899478 1.0000 120 chr2L:14519396-14519516 1.0000 120 chr3L:3450594-3450714 1.0000 120 chrX:2166263-2166383 1.0000 120 chr3L:8395739-8395859 1.0000 120 chrX:6800997-6801117 1.0000 120 chr3R:4846915-4847035 1.0000 120 chrX:6615581-6615701 1.0000 120 chr2L:9594982-9595102 1.0000 120 chr2R:20906655-20906775 1.0000 120 chr3L:5926114-5926234 1.0000 120 chr3R:22625874-22625994 1.0000 120 chr2L:12002947-12003067 1.0000 120 chr3L:19899066-19899186 1.0000 120 chr2R:11095269-11095389 1.0000 120 chr2L:8602760-8602880 1.0000 120 chr3R:5060387-5060507 1.0000 120 chrX:3068429-3068549 1.0000 120 chr2L:10856610-10856730 1.0000 120 chr2R:23176768-23176888 1.0000 120 chr3L:9028201-9028321 1.0000 120 chr2L:5520127-5520247 1.0000 120 chr2L:4847328-4847448 1.0000 120 chr2L:11037927-11038047 1.0000 120 chr3R:17584177-17584297 1.0000 120 chr2L:19517454-19517574 1.0000 120 chr2L:15248745-15248865 1.0000 120 chr3R:23300753-23300873 1.0000 120 chrX:9652144-9652264 1.0000 120 chr2L:7270412-7270532 1.0000 120 chr3R:10648931-10649051 1.0000 120 chr2L:11189255-11189375 1.0000 120 chr2R:8045137-8045257 1.0000 120 chr3R:27937910-27938030 1.0000 120 chr2R:23868643-23868763 1.0000 120 chr3L:14977935-14978055 1.0000 120 chr3R:12630453-12630573 1.0000 120 chr2R:21535562-21535682 1.0000 120 chr2L:18899996-18900116 1.0000 120 chr3R:8867827-8867947 1.0000 120 chr2L:17583110-17583230 1.0000 120 chr3L:6981903-6982023 1.0000 120 chr2L:3852293-3852413 1.0000 120 chr2L:522897-523017 1.0000 120 chr3L:16061029-16061149 1.0000 120 chrX:12466606-12466726 1.0000 120 chr2L:5238324-5238444 1.0000 120 chr2L:3598610-3598730 1.0000 120 chr3L:5987765-5987885 1.0000 120 chrX:5972161-5972281 1.0000 120 chr3L:745673-745793 1.0000 120 chrX:7001221-7001341 1.0000 120 chrX:9137334-9137454 1.0000 120 chr2R:13999383-13999503 1.0000 120 chr3R:28599609-28599729 1.0000 120 chr2L:1456339-1456459 1.0000 120 chr2L:7632893-7633013 1.0000 120 chr2R:20067267-20067387 1.0000 120 chr3R:16919204-16919324 1.0000 120 chr2L:6357086-6357206 1.0000 120 chr3L:3665439-3665559 1.0000 120 chr3L:11398720-11398840 1.0000 120 chr3L:10206433-10206553 1.0000 120 chr2L:21787087-21787207 1.0000 120 chrX:11548856-11548976 1.0000 120 chr3L:14325406-14325526 1.0000 120 chrX:15615552-15615672 1.0000 120 chr2L:20945406-20945526 1.0000 120 chr2L:12351082-12351202 1.0000 120 chrX:16822240-16822360 1.0000 120 chr2R:18676512-18676632 1.0000 120 chr2R:12007220-12007340 1.0000 120 chrX:13757027-13757147 1.0000 120 chr3R:25004898-25005018 1.0000 120 chr2R:20086132-20086252 1.0000 120 chr3R:22664406-22664526 1.0000 120 chr2R:13926297-13926417 1.0000 120 chr2L:7957110-7957230 1.0000 120 chr2L:20097249-20097369 1.0000 120 chr3L:12336389-12336509 1.0000 120 chr2R:9275319-9275439 1.0000 120 chr2L:21149216-21149336 1.0000 120 chr3L:11350881-11351001 1.0000 120 chr2R:18829741-18829861 1.0000 120 chrX:9349359-9349479 1.0000 120 chr3R:14609368-14609488 1.0000 120 chr2L:10468560-10468680 1.0000 120 chrX:16782188-16782308 1.0000 120 chrX:8126283-8126403 1.0000 120 chr2L:7395907-7396027 1.0000 120 chr3R:29591528-29591648 1.0000 120 chr3R:5998363-5998483 1.0000 120 chr2R:15201388-15201508 1.0000 120 chr2L:5043919-5044039 1.0000 120 chr3R:17540086-17540206 1.0000 120 chr3R:15676312-15676432 1.0000 120 chr3L:6264553-6264673 1.0000 120 chrX:12221702-12221822 1.0000 120 chr3L:4607787-4607907 1.0000 120 chr2L:7258237-7258357 1.0000 120 chrX:11108317-11108437 1.0000 120 chrX:3134484-3134604 1.0000 120 chr3R:8960451-8960571 1.0000 120 chr3L:8629020-8629140 1.0000 120 chr3R:30413918-30414038 1.0000 120 chr3R:13817991-13818111 1.0000 120 chr2L:5296674-5296794 1.0000 120 chr3L:12526946-12527066 1.0000 120 chrX:13258854-13258974 1.0000 120 chr3L:13911751-13911871 1.0000 120 chr3L:699504-699624 1.0000 120 chr3L:11993153-11993273 1.0000 120 chrX:7728604-7728724 1.0000 120 chr4:404490-404610 1.0000 120 chr2L:21163515-21163635 1.0000 120 chr2R:14909932-14910052 1.0000 120 chr3R:16834793-16834913 1.0000 120 chr2R:12605697-12605817 1.0000 120 chr3L:17978531-17978651 1.0000 120 chr3L:18204064-18204184 1.0000 120 chr2L:18666038-18666158 1.0000 120 chr2R:23577516-23577636 1.0000 120 chr3R:19024019-19024139 1.0000 120 chr2R:18528524-18528644 1.0000 120 chr2L:13073920-13074040 1.0000 120 chrX:9650175-9650295 1.0000 120 chr2L:16709726-16709846 1.0000 120 chrX:17751817-17751937 1.0000 120 chrX:11629105-11629225 1.0000 120 chr3R:9038825-9038945 1.0000 120 chrX:20519153-20519273 1.0000 120 chr3R:23028642-23028762 1.0000 120 chr2R:25085541-25085661 1.0000 120 chrX:3476167-3476287 1.0000 120 chr3R:31064779-31064899 1.0000 120 chr2L:11192845-11192965 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_az2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/az2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.341 C 0.16 G 0.161 T 0.339 Background letter frequencies (from file dataset with add-one prior applied): A 0.341 C 0.16 G 0.161 T 0.339 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGCCAYC MEME-1 width = 8 sites = 18 llr = 196 E-value = 1.8e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2::1:7:: pos.-specific C 1a:9a14a probability G 7:a::2:: matrix T ::::::6: bits 2.6 ** * * 2.4 ** * * 2.1 **** * 1.9 **** * Relative 1.6 **** * Entropy 1.3 ***** * (15.7 bits) 1.1 ***** ** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGCCATC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16919204-16919324 21 9.27e-07 CCGCCTTGCA GCGCCACC TGGCCTTGGT chr2R:12274337-12274457 99 9.27e-07 TAAGGTCAGC GCGCCACC TGGCGACGGC chr2R:16800200-16800320 20 9.27e-07 AACTGAACTA GCGCCACC TGAGACTGCA chr2L:3472383-3472503 85 9.27e-07 TGTGCAGATG GCGCCACC ATGACGCGCG chr2R:25085541-25085661 32 2.89e-06 AAAGTTGAGT GCGCCATC TTTTGCTTGA chr3R:16834793-16834913 75 2.89e-06 GAGCACATTG GCGCCATC TGTATTCCGT chr2L:7258237-7258357 76 2.89e-06 AGCGCCCAGT GCGCCATC TAGCAGAACT chr3L:6264553-6264673 52 2.89e-06 AGATTTACTG GCGCCATC TAGGGCCTTA chr2L:1362365-1362485 67 2.89e-06 ACTTCTGCCA GCGCCATC TGTTGAGCGC chr3L:10899358-10899478 24 5.61e-06 TGTTGTAGTG GCGCCCTC TTTTGTTTTT chr3R:16857125-16857245 77 5.61e-06 AAACAACACA GCGCCCTC TTTTGCGCTA chr3R:16748688-16748808 65 1.04e-05 CAACTCAGTG CCGCCATC TGACGTAAGA chrX:7162670-7162790 22 1.04e-05 TGACCACCAA ACGCCACC TGTTGGCCGG chr2R:11628147-11628267 71 1.50e-05 GTAACGAAAA CCGCCGCC AGGGGCGCTG chrX:17751817-17751937 7 1.89e-05 GAGAAG GCGACACC TAGCGGTACA chr2R:10160295-10160415 5 2.13e-05 TGTA ACGCCGTC ACCAAATCGA chr3L:14411002-14411122 101 2.13e-05 AAATGAATAC ACGCCGTC GGTCCATAGC chr2R:20906655-20906775 28 2.54e-05 ACACATTGCA GCGACATC TATCGTCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16919204-16919324 9.3e-07 20_[+1]_92 chr2R:12274337-12274457 9.3e-07 98_[+1]_14 chr2R:16800200-16800320 9.3e-07 19_[+1]_93 chr2L:3472383-3472503 9.3e-07 84_[+1]_28 chr2R:25085541-25085661 2.9e-06 31_[+1]_81 chr3R:16834793-16834913 2.9e-06 74_[+1]_38 chr2L:7258237-7258357 2.9e-06 75_[+1]_37 chr3L:6264553-6264673 2.9e-06 51_[+1]_61 chr2L:1362365-1362485 2.9e-06 66_[+1]_46 chr3L:10899358-10899478 5.6e-06 23_[+1]_89 chr3R:16857125-16857245 5.6e-06 76_[+1]_36 chr3R:16748688-16748808 1e-05 64_[+1]_48 chrX:7162670-7162790 1e-05 21_[+1]_91 chr2R:11628147-11628267 1.5e-05 70_[+1]_42 chrX:17751817-17751937 1.9e-05 6_[+1]_106 chr2R:10160295-10160415 2.1e-05 4_[+1]_108 chr3L:14411002-14411122 2.1e-05 100_[+1]_12 chr2R:20906655-20906775 2.5e-05 27_[+1]_85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCAYC width=8 seqs=18 chr3R:16919204-16919324 ( 21) GCGCCACC 1 chr2R:12274337-12274457 ( 99) GCGCCACC 1 chr2R:16800200-16800320 ( 20) GCGCCACC 1 chr2L:3472383-3472503 ( 85) GCGCCACC 1 chr2R:25085541-25085661 ( 32) GCGCCATC 1 chr3R:16834793-16834913 ( 75) GCGCCATC 1 chr2L:7258237-7258357 ( 76) GCGCCATC 1 chr3L:6264553-6264673 ( 52) GCGCCATC 1 chr2L:1362365-1362485 ( 67) GCGCCATC 1 chr3L:10899358-10899478 ( 24) GCGCCCTC 1 chr3R:16857125-16857245 ( 77) GCGCCCTC 1 chr3R:16748688-16748808 ( 65) CCGCCATC 1 chrX:7162670-7162790 ( 22) ACGCCACC 1 chr2R:11628147-11628267 ( 71) CCGCCGCC 1 chrX:17751817-17751937 ( 7) GCGACACC 1 chr2R:10160295-10160415 ( 5) ACGCCGTC 1 chr3L:14411002-14411122 ( 101) ACGCCGTC 1 chr2R:20906655-20906775 ( 28) GCGACATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 1.8e-007 -103 -52 217 -1081 -1081 265 -1081 -1081 -1081 -1081 264 -1081 -162 248 -1081 -1081 -1081 265 -1081 -1081 108 -52 5 -1081 -1081 128 -1081 85 -1081 265 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.8e-007 0.166667 0.111111 0.722222 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.722222 0.111111 0.166667 0.000000 0.000000 0.388889 0.000000 0.611111 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 regular expression -------------------------------------------------------------------------------- GCGCCA[TC]C -------------------------------------------------------------------------------- Time 7.51 secs. ******************************************************************************** ******************************************************************************** MOTIF GATGGCGC MEME-2 width = 8 sites = 18 llr = 192 E-value = 1.7e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GATGGCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :71::::1 pos.-specific C :::::9:9 probability G 932a91a: matrix T 1:7:1::: bits 2.6 * * 2.4 * ** 2.1 * ***** 1.9 * ***** Relative 1.6 * ***** Entropy 1.3 * ***** (15.4 bits) 1.1 ** ***** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GATGGCGC consensus GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:12526946-12527066 72 1.99e-06 CTGACCGCCA GATGGCGC GTTTCAATTC chr2R:20906655-20906775 99 1.99e-06 ACCAACGGTA GATGGCGC CAGTGCAACA chr3R:16748688-16748808 44 1.99e-06 CGAATCCATA GATGGCGC ATGCAACTCA chr2R:12274337-12274457 70 1.99e-06 ATTGCCGAAA GATGGCGC CCATGGCGCA chr2L:3472383-3472503 33 1.99e-06 TTCAGATACA GATGGCGC TCACGCCAAT chr2R:21535562-21535682 41 2.93e-06 ATTTACGCTA GGTGGCGC TTGGCAGGAC chr2R:16800200-16800320 91 2.93e-06 ATTTCGTATA GGTGGCGC CACTTAAACT chrX:17751817-17751937 110 3.87e-06 TTCAAGAGTA GAGGGCGC CGC chr3L:10899358-10899478 81 3.87e-06 ATAGCCGCTG GAGGGCGC TCATGTATAT chr4:406922-407042 113 3.87e-06 ATTTCCCACA GAGGGCGC chr2R:11628147-11628267 32 6.32e-06 AACAAATTTT GAAGGCGC GCCAAGCGGA chr2L:5043919-5044039 2 2.19e-05 G GATGTCGC TGGTGGAATT chr3R:16919204-16919324 72 2.19e-05 ACCAACACAA GATGTCGC TCTCCGACAG chrX:20507911-20508031 11 2.19e-05 GAGGAGGTGA GATGGCGA GAAAGGTTTA chrX:7162670-7162790 64 2.19e-05 TTGGCCCATA GATGGCGA CAGTATGCTT chr3R:19024019-19024139 8 2.28e-05 AACAGCT GGTGGGGC AGAGTTGCCA chr2L:1362365-1362485 38 2.88e-05 GGATTCCGTT TGTGGCGC CATCTCTTCG chr2R:23898471-23898591 97 3.90e-05 TCGATAACAT TGGGGCGC GATGCACGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:12526946-12527066 2e-06 71_[+2]_41 chr2R:20906655-20906775 2e-06 98_[+2]_14 chr3R:16748688-16748808 2e-06 43_[+2]_69 chr2R:12274337-12274457 2e-06 69_[+2]_43 chr2L:3472383-3472503 2e-06 32_[+2]_80 chr2R:21535562-21535682 2.9e-06 40_[+2]_72 chr2R:16800200-16800320 2.9e-06 90_[+2]_22 chrX:17751817-17751937 3.9e-06 109_[+2]_3 chr3L:10899358-10899478 3.9e-06 80_[+2]_32 chr4:406922-407042 3.9e-06 112_[+2] chr2R:11628147-11628267 6.3e-06 31_[+2]_81 chr2L:5043919-5044039 2.2e-05 1_[+2]_111 chr3R:16919204-16919324 2.2e-05 71_[+2]_41 chrX:20507911-20508031 2.2e-05 10_[+2]_102 chrX:7162670-7162790 2.2e-05 63_[+2]_49 chr3R:19024019-19024139 2.3e-05 7_[+2]_105 chr2L:1362365-1362485 2.9e-05 37_[+2]_75 chr2R:23898471-23898591 3.9e-05 96_[+2]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GATGGCGC width=8 seqs=18 chr3L:12526946-12527066 ( 72) GATGGCGC 1 chr2R:20906655-20906775 ( 99) GATGGCGC 1 chr3R:16748688-16748808 ( 44) GATGGCGC 1 chr2R:12274337-12274457 ( 70) GATGGCGC 1 chr2L:3472383-3472503 ( 33) GATGGCGC 1 chr2R:21535562-21535682 ( 41) GGTGGCGC 1 chr2R:16800200-16800320 ( 91) GGTGGCGC 1 chrX:17751817-17751937 ( 110) GAGGGCGC 1 chr3L:10899358-10899478 ( 81) GAGGGCGC 1 chr4:406922-407042 ( 113) GAGGGCGC 1 chr2R:11628147-11628267 ( 32) GAAGGCGC 1 chr2L:5043919-5044039 ( 2) GATGTCGC 1 chr3R:16919204-16919324 ( 72) GATGTCGC 1 chrX:20507911-20508031 ( 11) GATGGCGA 1 chrX:7162670-7162790 ( 64) GATGGCGA 1 chr3R:19024019-19024139 ( 8) GGTGGGGC 1 chr2L:1362365-1362485 ( 38) TGTGGCGC 1 chr2R:23898471-23898591 ( 97) TGGGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 1.7e-006 -1081 -1081 247 -161 108 -1081 79 -1081 -261 -1081 47 109 -1081 -1081 264 -1081 -1081 -1081 247 -161 -1081 256 -153 -1081 -1081 -1081 264 -1081 -162 248 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.7e-006 0.000000 0.000000 0.888889 0.111111 0.722222 0.000000 0.277778 0.000000 0.055556 0.000000 0.222222 0.722222 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.944444 0.055556 0.000000 0.000000 0.000000 1.000000 0.000000 0.111111 0.888889 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-2 regular expression -------------------------------------------------------------------------------- G[AG][TG]GGCGC -------------------------------------------------------------------------------- Time 13.79 secs. ******************************************************************************** ******************************************************************************** MOTIF TYKCAGTG MEME-3 width = 8 sites = 22 llr = 211 E-value = 1.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYKCAGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1::a::: pos.-specific C :52a:::: probability G ::5::a:a matrix T a44:::a: bits 2.6 * * 2.4 * * * 2.1 * * * 1.9 * * * Relative 1.6 * ***** Entropy 1.3 * ***** (13.8 bits) 1.1 * ***** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TCGCAGTG consensus TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYKCAGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:10350858-10350978 112 4.19e-06 TGCACATTTT TCGCAGTG C chrX:15591991-15592111 98 4.19e-06 GGCACATTTC TCGCAGTG TAGCTTGGAC chr2L:11417693-11417813 69 4.19e-06 GTATAGTTTT TCGCAGTG TAAGAACCTC chrX:9349359-9349479 112 1.72e-05 GGGAGATTTC TCCCAGTG T chrX:13757027-13757147 2 1.72e-05 T TTGCAGTG CTTGTGTAAA chrX:9137334-9137454 102 1.72e-05 CTAAATATTT TTGCAGTG TAAAAGCAAT chr3L:5926114-5926234 101 1.72e-05 CTAATTTTTT TCCCAGTG CACGTGCGCT chr3R:10498730-10498850 102 1.72e-05 TACAATTTTC TTGCAGTG CACAAGTGTT chrX:8837309-8837429 79 1.72e-05 TAAAACTATA TTGCAGTG CATACATATT chr2L:12351082-12351202 92 2.60e-05 TCTTAGTTGT TCTCAGTG TACTTGCATC chr3L:10206433-10206553 42 2.60e-05 GTTACATTTT TCTCAGTG TACTGTGTAA chr3R:13799783-13799903 99 2.60e-05 AGAATATTTC TCTCAGTG CACACTCAGA chr3L:3875177-3875297 105 2.60e-05 CATAGTTTTC TCTCAGTG TACATTTA chrX:771843-771963 12 2.60e-05 TAAAACCAAC TCTCAGTG GACTAAACCT chrX:3134484-3134604 86 3.48e-05 GCACATTTTT TTCCAGTG CCTACGAATT chr2R:19874680-19874800 80 3.48e-05 GTACAATTTC TTCCAGTG CATCTTGTTA chr3L:13911751-13911871 94 5.35e-05 ACCTGCTTTA TTTCAGTG GTAAATATTG chr3R:28599609-28599729 103 5.35e-05 CCACATAGAT TTTCAGTG GAAACAAGTG chr2R:13999383-13999503 108 5.35e-05 CACATTAAGT TTTCAGTG ACAGA chr2L:21149216-21149336 67 6.24e-05 ttcataaaaa tagcagtg cttgggacct chr3L:3450594-3450714 50 6.24e-05 TAAATGAATG TAGCAGTG CAATCAATAT chr2L:5043919-5044039 63 6.66e-05 AAATTTGCAC TCGCACTG TCTGCATGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYKCAGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:10350858-10350978 4.2e-06 111_[+3]_1 chrX:15591991-15592111 4.2e-06 97_[+3]_15 chr2L:11417693-11417813 4.2e-06 68_[+3]_44 chrX:9349359-9349479 1.7e-05 111_[+3]_1 chrX:13757027-13757147 1.7e-05 1_[+3]_111 chrX:9137334-9137454 1.7e-05 101_[+3]_11 chr3L:5926114-5926234 1.7e-05 100_[+3]_12 chr3R:10498730-10498850 1.7e-05 101_[+3]_11 chrX:8837309-8837429 1.7e-05 78_[+3]_34 chr2L:12351082-12351202 2.6e-05 91_[+3]_21 chr3L:10206433-10206553 2.6e-05 41_[+3]_71 chr3R:13799783-13799903 2.6e-05 98_[+3]_14 chr3L:3875177-3875297 2.6e-05 104_[+3]_8 chrX:771843-771963 2.6e-05 11_[+3]_101 chrX:3134484-3134604 3.5e-05 85_[+3]_27 chr2R:19874680-19874800 3.5e-05 79_[+3]_33 chr3L:13911751-13911871 5.4e-05 93_[+3]_19 chr3R:28599609-28599729 5.4e-05 102_[+3]_10 chr2R:13999383-13999503 5.4e-05 107_[+3]_5 chr2L:21149216-21149336 6.2e-05 66_[+3]_46 chr3L:3450594-3450714 6.2e-05 49_[+3]_63 chr2L:5043919-5044039 6.7e-05 62_[+3]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYKCAGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYKCAGTG width=8 seqs=22 chr3L:10350858-10350978 ( 112) TCGCAGTG 1 chrX:15591991-15592111 ( 98) TCGCAGTG 1 chr2L:11417693-11417813 ( 69) TCGCAGTG 1 chrX:9349359-9349479 ( 112) TCCCAGTG 1 chrX:13757027-13757147 ( 2) TTGCAGTG 1 chrX:9137334-9137454 ( 102) TTGCAGTG 1 chr3L:5926114-5926234 ( 101) TCCCAGTG 1 chr3R:10498730-10498850 ( 102) TTGCAGTG 1 chrX:8837309-8837429 ( 79) TTGCAGTG 1 chr2L:12351082-12351202 ( 92) TCTCAGTG 1 chr3L:10206433-10206553 ( 42) TCTCAGTG 1 chr3R:13799783-13799903 ( 99) TCTCAGTG 1 chr3L:3875177-3875297 ( 105) TCTCAGTG 1 chrX:771843-771963 ( 12) TCTCAGTG 1 chrX:3134484-3134604 ( 86) TTCCAGTG 1 chr2R:19874680-19874800 ( 80) TTCCAGTG 1 chr3L:13911751-13911871 ( 94) TTTCAGTG 1 chr3R:28599609-28599729 ( 103) TTTCAGTG 1 chr2R:13999383-13999503 ( 108) TTTCAGTG 1 chr2L:21149216-21149336 ( 67) TAGCAGTG 1 chr3L:3450594-3450714 ( 50) TAGCAGTG 1 chr2L:5043919-5044039 ( 63) TCGCACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYKCAGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.87754 E= 1.6e+000 -1110 -1110 -1110 156 -191 165 -1110 27 -1110 19 150 10 -1110 265 -1110 -1110 155 -1110 -1110 -1110 -1110 -181 257 -1110 -1110 -1110 -1110 156 -1110 -1110 264 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYKCAGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.6e+000 0.000000 0.000000 0.000000 1.000000 0.090909 0.500000 0.000000 0.409091 0.000000 0.181818 0.454545 0.363636 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.045455 0.954545 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYKCAGTG MEME-3 regular expression -------------------------------------------------------------------------------- T[CT][GT]CAGTG -------------------------------------------------------------------------------- Time 20.04 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGGCGGM MEME-4 width = 8 sites = 12 llr = 123 E-value = 1.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGGCGGM MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1::::3:3 pos.-specific C 93:19:15 probability G ::a91892 matrix T :7:::::: bits 2.6 * 2.4 * 2.1 * *** * 1.9 * *** * Relative 1.6 * ***** Entropy 1.3 * ***** (14.8 bits) 1.1 ******* 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTGGCGGC consensus C A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGCGGM MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21709620-21709740 38 4.40e-07 TGCTTTTCTT CCGGCGGC ACAGTGAACG chr2L:18666038-18666158 38 1.37e-06 ACTTATCCGC CTGGCGGC TAATCTGAGA chr3R:16857125-16857245 50 3.69e-06 TACAGAGCCC CTGGCGGG CATATGAGAA chr3R:29591528-29591648 49 5.68e-06 CATACTTAAA CTGGCGGA AGCCACAAGA chr3L:907849-907969 18 5.68e-06 TTATAGCATT CTGGCGGA GTTAATACAT chrX:8126283-8126403 45 8.59e-06 TACTTTAGTT CTGGCAGC TTAAATCATT chr2R:12633468-12633588 86 9.91e-06 TCGGGTGTAA CCGGCGCC CATCGATATC chr2L:21787087-21787207 15 1.27e-05 GAAAATTTCG CTGGGGGC AGACTGAAAG chrX:7001221-7001341 75 1.36e-05 TATTACTGAT CCGGCAGG TTCCCAATGA chr3L:13911751-13911871 47 2.28e-05 TCTAAACAAA CTGGCAGA TAGTTCATCT chr2R:12274337-12274457 112 2.28e-05 CCACCTGGCG ACGGCGGC T chr2L:6357086-6357206 62 3.77e-05 TGCGTTTCAG CTGCCGGA AGATAGATGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGCGGM MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21709620-21709740 4.4e-07 37_[+4]_75 chr2L:18666038-18666158 1.4e-06 37_[+4]_75 chr3R:16857125-16857245 3.7e-06 49_[+4]_63 chr3R:29591528-29591648 5.7e-06 48_[+4]_64 chr3L:907849-907969 5.7e-06 17_[+4]_95 chrX:8126283-8126403 8.6e-06 44_[+4]_68 chr2R:12633468-12633588 9.9e-06 85_[+4]_27 chr2L:21787087-21787207 1.3e-05 14_[+4]_98 chrX:7001221-7001341 1.4e-05 74_[+4]_38 chr3L:13911751-13911871 2.3e-05 46_[+4]_66 chr2R:12274337-12274457 2.3e-05 111_[+4]_1 chr2L:6357086-6357206 3.8e-05 61_[+4]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGCGGM MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGGCGGM width=8 seqs=12 chr2R:21709620-21709740 ( 38) CCGGCGGC 1 chr2L:18666038-18666158 ( 38) CTGGCGGC 1 chr3R:16857125-16857245 ( 50) CTGGCGGG 1 chr3R:29591528-29591648 ( 49) CTGGCGGA 1 chr3L:907849-907969 ( 18) CTGGCGGA 1 chrX:8126283-8126403 ( 45) CTGGCAGC 1 chr2R:12633468-12633588 ( 86) CCGGCGCC 1 chr2L:21787087-21787207 ( 15) CTGGGGGC 1 chrX:7001221-7001341 ( 75) CCGGCAGG 1 chr3L:13911751-13911871 ( 47) CTGGCAGA 1 chr2R:12274337-12274457 ( 112) ACGGCGGC 1 chr2L:6357086-6357206 ( 62) CTGCCGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGCGGM MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 1.9e+003 -203 252 -1023 -1023 -1023 106 -1023 98 -1023 -1023 264 -1023 -1023 -94 251 -1023 -1023 252 -95 -1023 -45 -1023 222 -1023 -1023 -94 251 -1023 -3 165 5 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGCGGM MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.9e+003 0.083333 0.916667 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 0.916667 0.083333 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.083333 0.916667 0.000000 0.333333 0.500000 0.166667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGCGGM MEME-4 regular expression -------------------------------------------------------------------------------- C[TC]GGC[GA]G[CA] -------------------------------------------------------------------------------- Time 26.24 secs. ******************************************************************************** ******************************************************************************** MOTIF GCRCTGCC MEME-5 width = 8 sites = 11 llr = 114 E-value = 1.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCRCTGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::6::::1 pos.-specific C 1a:91:a6 probability G 9:4:1a:1 matrix T :::18::2 bits 2.6 * ** 2.4 * ** 2.1 ** * ** 1.9 ** * ** Relative 1.6 ** * ** Entropy 1.3 ** * ** (15.0 bits) 1.1 **** ** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCACTGCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRCTGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:21163515-21163635 85 2.89e-06 CGCATTGGCA GCACTGCC CACAATTCAG chr3R:29591528-29591648 106 2.89e-06 TTTTTTGAGT GCACTGCC AGGACCT chr2L:10428704-10428824 106 2.89e-06 AATATTTACA GCACTGCC ACACTGC chr2R:10438957-10439077 25 3.77e-06 TTGATACAGT GCGCGGCC CATTGCACAG chrX:17751817-17751937 58 5.63e-06 TAATAAAACA GCACCGCC GATGTAAGAT chr2R:11628147-11628267 83 8.53e-06 GCCGCCAGGG GCGCTGCT GCACACAAAA chr3R:23028642-23028762 10 1.05e-05 ACGTCGAAT GCACTGCG AGAAAAGTAG chr3R:19114009-19114129 80 1.47e-05 tttctcattc gcactgct gtcagctaag chr2R:14971115-14971235 108 1.75e-05 AATTTTTAGA CCACTGCC TTTTG chrX:12221702-12221822 31 1.95e-05 TGAAGACTAC GCGCTGCA GATTTAGATA chr3L:12336389-12336509 43 2.57e-05 CGACGACAAA GCGTTGCC ACATGGATAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRCTGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:21163515-21163635 2.9e-06 84_[+5]_28 chr3R:29591528-29591648 2.9e-06 105_[+5]_7 chr2L:10428704-10428824 2.9e-06 105_[+5]_7 chr2R:10438957-10439077 3.8e-06 24_[+5]_88 chrX:17751817-17751937 5.6e-06 57_[+5]_55 chr2R:11628147-11628267 8.5e-06 82_[+5]_30 chr3R:23028642-23028762 1.1e-05 9_[+5]_103 chr3R:19114009-19114129 1.5e-05 79_[+5]_33 chr2R:14971115-14971235 1.8e-05 107_[+5]_5 chrX:12221702-12221822 2e-05 30_[+5]_82 chr3L:12336389-12336509 2.6e-05 42_[+5]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRCTGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCRCTGCC width=8 seqs=11 chr2L:21163515-21163635 ( 85) GCACTGCC 1 chr3R:29591528-29591648 ( 106) GCACTGCC 1 chr2L:10428704-10428824 ( 106) GCACTGCC 1 chr2R:10438957-10439077 ( 25) GCGCGGCC 1 chrX:17751817-17751937 ( 58) GCACCGCC 1 chr2R:11628147-11628267 ( 83) GCGCTGCT 1 chr3R:23028642-23028762 ( 10) GCACTGCG 1 chr3R:19114009-19114129 ( 80) GCACTGCT 1 chr2R:14971115-14971235 ( 108) CCACTGCC 1 chrX:12221702-12221822 ( 31) GCGCTGCA 1 chr3L:12336389-12336509 ( 43) GCGTTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRCTGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 1.8e+004 -1010 -81 250 -1010 -1010 265 -1010 -1010 90 -1010 118 -1010 -1010 251 -1010 -189 -1010 -81 -82 127 -1010 -1010 264 -1010 -1010 265 -1010 -1010 -190 199 -82 -90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRCTGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.8e+004 0.000000 0.090909 0.909091 0.000000 0.000000 1.000000 0.000000 0.000000 0.636364 0.000000 0.363636 0.000000 0.000000 0.909091 0.000000 0.090909 0.000000 0.090909 0.090909 0.818182 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.090909 0.636364 0.090909 0.181818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRCTGCC MEME-5 regular expression -------------------------------------------------------------------------------- GC[AG]CTGCC -------------------------------------------------------------------------------- Time 32.51 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23977267-23977387 5.86e-01 120 chr2R:4744179-4744299 8.35e-01 120 chr2R:12633468-12633588 7.06e-03 85_[+4(9.91e-06)]_27 chr2R:12537622-12537742 1.91e-01 120 chr4:959582-959702 3.40e-01 120 chr3R:26900142-26900262 6.41e-01 120 chr3R:22039577-22039697 5.87e-01 120 chr3R:19166401-19166521 4.48e-01 120 chr3L:14411002-14411122 4.73e-02 100_[+1(2.13e-05)]_12 chr2L:8554399-8554519 8.85e-01 120 chr2L:10428704-10428824 5.75e-04 105_[+5(2.89e-06)]_7 chr3L:16760400-16760520 5.99e-01 120 chr3R:6791278-6791398 9.99e-01 120 chr3R:16857125-16857245 2.80e-05 49_[+4(3.69e-06)]_19_[+1(5.61e-06)]_\ 36 chr3R:20833871-20833991 2.98e-01 120 chr3R:18242113-18242233 1.66e-01 120 chr2L:1362365-1362485 1.93e-07 41_[+1(2.89e-06)]_17_[+1(2.89e-06)]_\ 17_[+5(6.98e-05)]_21 chr3R:16769533-16769653 5.83e-01 120 chr3L:21047199-21047319 1.44e-02 64_[+3(7.55e-05)]_48 chr3R:21834388-21834508 9.60e-01 120 chr3R:9494393-9494513 9.70e-01 120 chr3R:21200069-21200189 1.20e-02 120 chr3L:10391152-10391272 9.99e-01 120 chr3L:13262379-13262499 7.72e-01 120 chr3L:16054331-16054451 9.01e-01 120 chrX:13128031-13128151 1.35e-01 120 chr3R:13549597-13549717 6.78e-01 120 chr2L:9996715-9996835 6.52e-01 120 chrX:8837309-8837429 5.13e-02 78_[+3(1.72e-05)]_34 chr3L:3855335-3855455 7.86e-01 120 chr2R:23898471-23898591 3.42e-03 96_[+2(3.90e-05)]_16 chr3R:23387065-23387185 9.98e-01 120 chr2L:493420-493540 4.21e-01 120 chr2L:14701639-14701759 2.37e-01 120 chrX:2011698-2011818 2.20e-01 120 chr2L:15432383-15432503 8.56e-01 120 chr2L:14245610-14245730 4.18e-01 120 chrX:15475535-15475655 1.25e-01 120 chr2L:6830556-6830676 1.10e-01 120 chrX:771843-771963 5.94e-02 11_[+3(2.60e-05)]_101 chrX:19348963-19349083 8.47e-01 120 chr2L:7566757-7566877 7.83e-01 120 chr2R:10160295-10160415 3.95e-03 4_[+1(2.13e-05)]_108 chr2R:13028939-13029059 2.90e-01 120 chr3L:10428191-10428311 9.59e-01 120 chr3L:11336546-11336666 3.45e-02 120 chr3R:10498730-10498850 4.35e-02 101_[+3(1.72e-05)]_11 chr3L:10849774-10849894 5.12e-01 120 chr4:959783-959903 9.19e-01 120 chr2R:11435228-11435348 6.50e-01 120 chr2L:3805323-3805443 9.33e-01 120 chr2L:11417693-11417813 8.28e-03 68_[+3(4.19e-06)]_44 chr2L:11091218-11091338 6.49e-01 120 chrX:10601773-10601893 3.92e-01 120 chr2L:19490245-19490365 1.42e-01 120 chr3L:3875177-3875297 1.73e-01 104_[+3(2.60e-05)]_8 chr3R:23293558-23293678 7.97e-01 120 chr3R:19114009-19114129 8.35e-04 79_[+5(1.47e-05)]_33 chrX:15591991-15592111 1.62e-03 97_[+3(4.19e-06)]_15 chr3L:630197-630317 3.37e-01 120 chr2R:19874680-19874800 5.51e-02 79_[+3(3.48e-05)]_33 chr2L:18694841-18694961 8.99e-01 120 chrX:10573673-10573793 3.12e-01 120 chr3L:14166437-14166557 1.90e-01 120 chr3R:6760774-6760894 1.02e-01 120 chr2R:9286617-9286737 7.40e-01 120 chr3R:31687919-31688039 9.14e-01 120 chr2R:7241746-7241866 5.51e-01 120 chr2L:18505636-18505756 6.71e-01 120 chr3R:26235171-26235291 3.24e-01 120 chrX:7162670-7162790 4.00e-05 21_[+1(1.04e-05)]_34_[+2(2.19e-05)]_\ 49 chr3L:18250803-18250923 6.37e-01 120 chr3L:7861903-7862023 1.00e+00 120 chr2R:14971115-14971235 6.46e-03 107_[+5(1.75e-05)]_5 chr2R:10438957-10439077 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chr2R:23577516-23577636 1.66e-01 120 chr3R:19024019-19024139 1.04e-03 7_[+2(2.28e-05)]_105 chr2R:18528524-18528644 8.38e-01 120 chr2L:13073920-13074040 5.15e-02 120 chrX:9650175-9650295 4.61e-01 120 chr2L:16709726-16709846 2.18e-01 120 chrX:17751817-17751937 9.96e-08 6_[+1(1.89e-05)]_43_[+5(5.63e-06)]_\ 44_[+2(3.87e-06)]_3 chrX:11629105-11629225 5.59e-01 120 chr3R:9038825-9038945 1.59e-01 120 chrX:20519153-20519273 8.92e-01 120 chr3R:23028642-23028762 2.82e-03 9_[+5(1.05e-05)]_103 chr2R:25085541-25085661 3.11e-03 31_[+1(2.89e-06)]_81 chrX:3476167-3476287 4.59e-01 120 chr3R:31064779-31064899 5.62e-01 120 chr2L:11192845-11192965 4.00e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************