******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/ash1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:10612809-10612929 1.0000 120 chr3R:10610388-10610508 1.0000 120 chr2L:163383-163503 1.0000 120 chr3R:16734330-16734450 1.0000 120 chr3R:6966679-6966799 1.0000 120 chr3R:16833130-16833250 1.0000 120 chrX:12720148-12720268 1.0000 120 chr2L:21830389-21830509 1.0000 120 chrX:2140620-2140740 1.0000 120 chrX:2125662-2125782 1.0000 120 chr2R:12956317-12956437 1.0000 120 chr3L:647220-647340 1.0000 120 chrX:12749137-12749257 1.0000 120 chr4:502765-502885 1.0000 120 chr3R:10605159-10605279 1.0000 120 chr3R:13013144-13013264 1.0000 120 chrX:12739186-12739306 1.0000 120 chr3R:5086544-5086664 1.0000 120 chr3R:6815283-6815403 1.0000 120 chr2L:20783266-20783386 1.0000 120 chr3R:16747930-16748050 1.0000 120 chr3L:750979-751099 1.0000 120 chr3R:16824995-16825115 1.0000 120 chr3L:3417217-3417337 1.0000 120 chr3R:16850087-16850207 1.0000 120 chr3R:21635840-21635960 1.0000 120 chrX:6857809-6857929 1.0000 120 chr4:491042-491162 1.0000 120 chrX:12742346-12742466 1.0000 120 chrX:3405625-3405745 1.0000 120 chr3R:9034960-9035080 1.0000 120 chr4:70374-70494 1.0000 120 chr4:73074-73194 1.0000 120 chr3R:16826145-16826265 1.0000 120 chr3R:6932747-6932867 1.0000 120 chr3R:10596541-10596661 1.0000 120 chr2L:21899125-21899245 1.0000 120 chr3L:11248450-11248570 1.0000 120 chr3R:5032508-5032628 1.0000 120 chr3R:9882070-9882190 1.0000 120 chr3R:5077476-5077596 1.0000 120 chr3R:16243928-16244048 1.0000 120 chr3R:5083355-5083475 1.0000 120 chr3L:15589615-15589735 1.0000 120 chr2L:165518-165638 1.0000 120 chr3L:12681507-12681627 1.0000 120 chrX:12716091-12716211 1.0000 120 chr3R:24577395-24577515 1.0000 120 chrX:6868906-6869026 1.0000 120 chr3R:16256149-16256269 1.0000 120 chr2R:6611235-6611355 1.0000 120 chr3R:22152315-22152435 1.0000 120 chr3R:16857141-16857261 1.0000 120 chr2R:6218514-6218634 1.0000 120 chr2R:12169128-12169248 1.0000 120 chr3R:10662250-10662370 1.0000 120 chr2L:1653241-1653361 1.0000 120 chrX:12716871-12716991 1.0000 120 chrX:7708167-7708287 1.0000 120 chr2L:21828990-21829110 1.0000 120 chr2L:21846986-21847106 1.0000 120 chr3R:4911230-4911350 1.0000 120 chrX:16216601-16216721 1.0000 120 chr3R:16913723-16913843 1.0000 120 chr2L:21829745-21829865 1.0000 120 chr2L:14024553-14024673 1.0000 120 chr3R:21604686-21604806 1.0000 120 chr3L:11257693-11257813 1.0000 120 chr3R:16275491-16275611 1.0000 120 chr4:506321-506441 1.0000 120 chr3L:10680949-10681069 1.0000 120 chrX:17659257-17659377 1.0000 120 chrX:6997112-6997232 1.0000 120 chrX:6871802-6871922 1.0000 120 chr3R:13877277-13877397 1.0000 120 chr3L:11342799-11342919 1.0000 120 chr3R:10614201-10614321 1.0000 120 chrX:12724489-12724609 1.0000 120 chrX:17739173-17739293 1.0000 120 chr3R:5085421-5085541 1.0000 120 chr3R:16848781-16848901 1.0000 120 chr3L:698949-699069 1.0000 120 chr3L:11489670-11489790 1.0000 120 chr2R:18141293-18141413 1.0000 120 chr4:844577-844697 1.0000 120 chr3R:21615338-21615458 1.0000 120 chr3R:7011146-7011266 1.0000 120 chrX:3748828-3748948 1.0000 120 chr2L:7038636-7038756 1.0000 120 chr3R:16847430-16847550 1.0000 120 chr3R:16934835-16934955 1.0000 120 chr3L:22948209-22948329 1.0000 120 chrX:10735807-10735927 1.0000 120 chr2L:1651223-1651343 1.0000 120 chrX:12733864-12733984 1.0000 120 chr3R:16274795-16274915 1.0000 120 chr3R:16254143-16254263 1.0000 120 chr3R:22518464-22518584 1.0000 120 chr3R:7090411-7090531 1.0000 120 chr3R:21637218-21637338 1.0000 120 chr4:508571-508691 1.0000 120 chr3R:10616737-10616857 1.0000 120 chr2L:1654394-1654514 1.0000 120 chr3L:7947950-7948070 1.0000 120 chr2L:182776-182896 1.0000 120 chr3L:10860192-10860312 1.0000 120 chr3R:10354413-10354533 1.0000 120 chr2L:12464105-12464225 1.0000 120 chr2L:4031378-4031498 1.0000 120 chr3R:7000682-7000802 1.0000 120 chr3R:16850691-16850811 1.0000 120 chr2R:12970938-12971058 1.0000 120 chr3R:15993239-15993359 1.0000 120 chr2R:16180477-16180597 1.0000 120 chrX:6868436-6868556 1.0000 120 chr3R:10622245-10622365 1.0000 120 chr3R:6963290-6963410 1.0000 120 chr3R:9027174-9027294 1.0000 120 chr3R:16830130-16830250 1.0000 120 chr3L:16049143-16049263 1.0000 120 chrX:17830769-17830889 1.0000 120 chr3R:8848237-8848357 1.0000 120 chr2L:14495062-14495182 1.0000 120 chrX:580679-580799 1.0000 120 chr3R:6978509-6978629 1.0000 120 chrX:6866100-6866220 1.0000 120 chr2L:3825618-3825738 1.0000 120 chr3R:9344598-9344718 1.0000 120 chr2R:6612933-6613053 1.0000 120 chr2L:3836782-3836902 1.0000 120 chrX:12735251-12735371 1.0000 120 chrX:10744359-10744479 1.0000 120 chr2R:13822860-13822980 1.0000 120 chr3R:8190981-8191101 1.0000 120 chr3R:11648895-11649015 1.0000 120 chr2L:21051912-21052032 1.0000 120 chr3R:10535904-10536024 1.0000 120 chrX:6853520-6853640 1.0000 120 chr3R:6992097-6992217 1.0000 120 chr3L:11323630-11323750 1.0000 120 chr2L:6817509-6817629 1.0000 120 chr2L:378090-378210 1.0000 120 chr2R:14481236-14481356 1.0000 120 chr3L:6790112-6790232 1.0000 120 chr3R:16012250-16012370 1.0000 120 chrX:10814167-10814287 1.0000 120 chr3R:10617243-10617363 1.0000 120 chr4:60130-60250 1.0000 120 chr2R:19254140-19254260 1.0000 120 chr2R:22243935-22244055 1.0000 120 chr3L:630782-630902 1.0000 120 chr3R:11777165-11777285 1.0000 120 chr2R:17028315-17028435 1.0000 120 chr3R:16782518-16782638 1.0000 120 chr3L:748574-748694 1.0000 120 chr3R:16811837-16811957 1.0000 120 chr3L:19845626-19845746 1.0000 120 chr2R:15931336-15931456 1.0000 120 chrX:7608423-7608543 1.0000 120 chrX:13642125-13642245 1.0000 120 chr3L:12609627-12609747 1.0000 120 chr3L:16045135-16045255 1.0000 120 chr3L:15824641-15824761 1.0000 120 chr2R:22686834-22686954 1.0000 120 chr3R:16211271-16211391 1.0000 120 chr2L:13878921-13879041 1.0000 120 chrX:2138629-2138749 1.0000 120 chr2R:14219847-14219967 1.0000 120 chr2R:9565889-9566009 1.0000 120 chrX:12665165-12665285 1.0000 120 chr3L:15699760-15699880 1.0000 120 chr2L:7976815-7976935 1.0000 120 chr3L:22407766-22407886 1.0000 120 chr3L:17007364-17007484 1.0000 120 chr3R:5367672-5367792 1.0000 120 chr2L:8088260-8088380 1.0000 120 chr3R:30198945-30199065 1.0000 120 chr2R:21702855-21702975 1.0000 120 chr2L:6536193-6536313 1.0000 120 chr3L:2584571-2584691 1.0000 120 chr3R:16882590-16882710 1.0000 120 chr2L:3771060-3771180 1.0000 120 chr2L:8083725-8083845 1.0000 120 chr3R:30765759-30765879 1.0000 120 chr3R:16748942-16749062 1.0000 120 chr2R:23615279-23615399 1.0000 120 chr2L:9158467-9158587 1.0000 120 chr2L:12463151-12463271 1.0000 120 chr2R:17458369-17458489 1.0000 120 chr2R:16848375-16848495 1.0000 120 chr2L:11210410-11210530 1.0000 120 chr3L:160780-160900 1.0000 120 chr3L:11366704-11366824 1.0000 120 chr2R:10541589-10541709 1.0000 120 chr3L:14274833-14274953 1.0000 120 chr2R:22312751-22312871 1.0000 120 chrX:19306693-19306813 1.0000 120 chr2R:9116542-9116662 1.0000 120 chr3R:16772001-16772121 1.0000 120 chr2L:1627895-1628015 1.0000 120 chr3L:548924-549044 1.0000 120 chr3R:9550597-9550717 1.0000 120 chr2R:23203856-23203976 1.0000 120 chr4:59059-59179 1.0000 120 chr3R:17054001-17054121 1.0000 120 chr2L:6833915-6834035 1.0000 120 chr3L:6904107-6904227 1.0000 120 chrX:13625997-13626117 1.0000 120 chr2R:16731285-16731405 1.0000 120 chr3L:12804839-12804959 1.0000 120 chr2L:11445523-11445643 1.0000 120 chrX:13822212-13822332 1.0000 120 chrX:3378576-3378696 1.0000 120 chr3R:19153601-19153721 1.0000 120 chr2R:15922025-15922145 1.0000 120 chr3L:4407125-4407245 1.0000 120 chr3L:3932872-3932992 1.0000 120 chr3R:28330892-28331012 1.0000 120 chr2R:11529676-11529796 1.0000 120 chr2L:16271594-16271714 1.0000 120 chr3R:16764291-16764411 1.0000 120 chr2L:14491053-14491173 1.0000 120 chr3R:14057596-14057716 1.0000 120 chr3R:4996721-4996841 1.0000 120 chr2R:9554138-9554258 1.0000 120 chrX:6855734-6855854 1.0000 120 chr3R:21580224-21580344 1.0000 120 chr2L:8825649-8825769 1.0000 120 chr2L:171606-171726 1.0000 120 chr3R:21618442-21618562 1.0000 120 chr2L:19135048-19135168 1.0000 120 chr3L:12693083-12693203 1.0000 120 chr2L:14410471-14410591 1.0000 120 chr3R:17118992-17119112 1.0000 120 chrX:5899345-5899465 1.0000 120 chr3R:4852652-4852772 1.0000 120 chr2R:22387320-22387440 1.0000 120 chrX:11715544-11715664 1.0000 120 chr3L:4363997-4364117 1.0000 120 chr3R:31311115-31311235 1.0000 120 chr2R:19275461-19275581 1.0000 120 chr3R:16703071-16703191 1.0000 120 chr3R:9932628-9932748 1.0000 120 chrX:3136669-3136789 1.0000 120 chr3L:4413913-4414033 1.0000 120 chr3R:19326111-19326231 1.0000 120 chr2R:11190928-11191048 1.0000 120 chr3R:17811533-17811653 1.0000 120 chr2R:5726905-5727025 1.0000 120 chrX:18082892-18083012 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_ash1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/ash1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.248 C 0.258 G 0.247 T 0.247 Background letter frequencies (from file dataset with add-one prior applied): A 0.248 C 0.258 G 0.247 T 0.247 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGTGTGYG MEME-1 width = 8 sites = 33 llr = 308 E-value = 1.6e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1::::1 pos.-specific C ::2:::4: probability G :a:a:a:9 matrix T a:8:a:6: bits 2.0 * *** 1.8 ** *** 1.6 ** *** * 1.4 ** *** * Relative 1.2 ** *** * Entropy 1.0 ******** (13.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:17811533-17811653 97 1.39e-05 AAGCTCAgtg tgtgtgtg tgcgcgacag chr2L:14410471-14410591 57 1.39e-05 CAGGTGGGCG TGTGTGTG GCGCTCGTTG chr2L:16271594-16271714 104 1.39e-05 tgtgtgttgg tgtgtgtg tgtgGAGTC chr3R:9550597-9550717 48 1.39e-05 TGACCACAAA TGTGTGTG CGCGTTCTTC chr2L:11210410-11210530 55 1.39e-05 tgtgtgtgtg tgtgtgtg tgtctgtgag chr2L:8083725-8083845 95 1.39e-05 CGGTGGCAtg tgtgtgtg tcagtgcgtg chr2R:22686834-22686954 35 1.39e-05 cgtgttgtgt tgtgtgtg CCTCATTGTT chrX:6853520-6853640 111 1.39e-05 actgagtgtg tgtgtgtg AG chr2L:7038636-7038756 103 1.39e-05 Agtatgtgtg tgtgtgtg ttcgtgcgtt chr3R:7011146-7011266 106 1.39e-05 TCTACTCGCC tgtgtgtg agtgtgt chrX:17739173-17739293 53 1.39e-05 tGCGAATGTG TGTGTGTG TGCCATGCTC chr2R:6611235-6611355 36 1.39e-05 TGCGTGTATG TGTGTGTG TGTTGGATac chrX:6868906-6869026 51 1.39e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgAG chr3L:3417217-3417337 110 1.39e-05 TAtgtgtgcg tgtgtgtg cga chrX:5899345-5899465 65 2.83e-05 CCTTTGACCA TGTGTGCG TGTGTGTATT chr2L:8088260-8088380 34 2.83e-05 CCGTTGGTCA TGTGTGCG ATTCAGTCTG chr3R:5367672-5367792 105 2.83e-05 GGCGTAAGGG TGTGTGCG TGCGTGTG chr3R:16850691-16850811 50 2.83e-05 AAAGTGTATT TGTGTGCG TGCCATTGAC chr2L:4031378-4031498 95 2.83e-05 GATTTCCGCG TGTGTGCG AACAACAACT chr3R:13877277-13877397 16 2.83e-05 AAGCAGTATC TGTGTGCG AGAGAACGGG chrX:12749137-12749257 111 2.83e-05 CATCTCAGCg tgtgtgcg tg chr3R:9027174-9027294 84 4.28e-05 TCAGCCCACG TGCGTGTG TCAGAAGACG chr3R:16274795-16274915 104 4.28e-05 agtgcgcgaa tgcgtgtg agtgtgggc chr4:506321-506441 24 5.67e-05 TTCCCGTGCC TGAGTGTG AGAATGAGTA chr2R:15922025-15922145 81 7.18e-05 TTGAAAGTGA TGCGTGCG TCTGACCGCT chrX:12716091-12716211 6 7.18e-05 tagtg tgcgtgcg aACCGAATGC chr3R:10605159-10605279 75 7.18e-05 CCGCCGCCGC TGCGTGCG TCATGTGCGG chr4:59059-59179 2 8.57e-05 G TGTGTGTA TGTGCCAGGC chr2L:9158467-9158587 22 8.57e-05 CACCCACACT TGTGTGTA GCCAAGACGC chr3L:22948209-22948329 15 8.57e-05 TCACCCATGG TGTGTGTA TATATTTAAA chr2R:5726905-5727025 23 1.00e-04 CCAGTGTGAG TGAGTGCG ATGTCGCGCA chr3R:16764291-16764411 98 1.00e-04 TTTCGGATTT TGAGTGCG TTCTTCCGCC chr2L:3825618-3825738 107 1.29e-04 GATCCCAAGT CGTGTGTG AGAATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:17811533-17811653 1.4e-05 96_[+1]_16 chr2L:14410471-14410591 1.4e-05 56_[+1]_56 chr2L:16271594-16271714 1.4e-05 103_[+1]_9 chr3R:9550597-9550717 1.4e-05 47_[+1]_65 chr2L:11210410-11210530 1.4e-05 54_[+1]_58 chr2L:8083725-8083845 1.4e-05 94_[+1]_18 chr2R:22686834-22686954 1.4e-05 34_[+1]_78 chrX:6853520-6853640 1.4e-05 110_[+1]_2 chr2L:7038636-7038756 1.4e-05 102_[+1]_10 chr3R:7011146-7011266 1.4e-05 105_[+1]_7 chrX:17739173-17739293 1.4e-05 52_[+1]_60 chr2R:6611235-6611355 1.4e-05 35_[+1]_77 chrX:6868906-6869026 1.4e-05 50_[+1]_62 chr3L:3417217-3417337 1.4e-05 109_[+1]_3 chrX:5899345-5899465 2.8e-05 64_[+1]_48 chr2L:8088260-8088380 2.8e-05 33_[+1]_79 chr3R:5367672-5367792 2.8e-05 104_[+1]_8 chr3R:16850691-16850811 2.8e-05 49_[+1]_63 chr2L:4031378-4031498 2.8e-05 94_[+1]_18 chr3R:13877277-13877397 2.8e-05 15_[+1]_97 chrX:12749137-12749257 2.8e-05 110_[+1]_2 chr3R:9027174-9027294 4.3e-05 83_[+1]_29 chr3R:16274795-16274915 4.3e-05 103_[+1]_9 chr4:506321-506441 5.7e-05 23_[+1]_89 chr2R:15922025-15922145 7.2e-05 80_[+1]_32 chrX:12716091-12716211 7.2e-05 5_[+1]_107 chr3R:10605159-10605279 7.2e-05 74_[+1]_38 chr4:59059-59179 8.6e-05 1_[+1]_111 chr2L:9158467-9158587 8.6e-05 21_[+1]_91 chr3L:22948209-22948329 8.6e-05 14_[+1]_98 chr2R:5726905-5727025 0.0001 22_[+1]_90 chr3R:16764291-16764411 0.0001 97_[+1]_15 chr2L:3825618-3825738 0.00013 106_[+1]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGYG width=8 seqs=33 chr3R:17811533-17811653 ( 97) TGTGTGTG 1 chr2L:14410471-14410591 ( 57) TGTGTGTG 1 chr2L:16271594-16271714 ( 104) TGTGTGTG 1 chr3R:9550597-9550717 ( 48) TGTGTGTG 1 chr2L:11210410-11210530 ( 55) TGTGTGTG 1 chr2L:8083725-8083845 ( 95) TGTGTGTG 1 chr2R:22686834-22686954 ( 35) TGTGTGTG 1 chrX:6853520-6853640 ( 111) TGTGTGTG 1 chr2L:7038636-7038756 ( 103) TGTGTGTG 1 chr3R:7011146-7011266 ( 106) TGTGTGTG 1 chrX:17739173-17739293 ( 53) TGTGTGTG 1 chr2R:6611235-6611355 ( 36) TGTGTGTG 1 chrX:6868906-6869026 ( 51) TGTGTGTG 1 chr3L:3417217-3417337 ( 110) TGTGTGTG 1 chrX:5899345-5899465 ( 65) TGTGTGCG 1 chr2L:8088260-8088380 ( 34) TGTGTGCG 1 chr3R:5367672-5367792 ( 105) TGTGTGCG 1 chr3R:16850691-16850811 ( 50) TGTGTGCG 1 chr2L:4031378-4031498 ( 95) TGTGTGCG 1 chr3R:13877277-13877397 ( 16) TGTGTGCG 1 chrX:12749137-12749257 ( 111) TGTGTGCG 1 chr3R:9027174-9027294 ( 84) TGCGTGTG 1 chr3R:16274795-16274915 ( 104) TGCGTGTG 1 chr4:506321-506441 ( 24) TGAGTGTG 1 chr2R:15922025-15922145 ( 81) TGCGTGCG 1 chrX:12716091-12716211 ( 6) TGCGTGCG 1 chr3R:10605159-10605279 ( 75) TGCGTGCG 1 chr4:59059-59179 ( 2) TGTGTGTA 1 chr2L:9158467-9158587 ( 22) TGTGTGTA 1 chr3L:22948209-22948329 ( 15) TGTGTGTA 1 chr2R:5726905-5727025 ( 23) TGAGTGCG 1 chr3R:16764291-16764411 ( 98) TGAGTGCG 1 chr2L:3825618-3825738 ( 107) CGTGTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 1.6e-008 -1169 -309 -1169 197 -1169 -1169 202 -1169 -144 -77 -1169 162 -1169 -1169 202 -1169 -1169 -1169 -1169 202 -1169 -1169 202 -1169 -1169 50 -1169 136 -144 -1169 188 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.6e-008 0.000000 0.030303 0.000000 0.969697 0.000000 0.000000 1.000000 0.000000 0.090909 0.151515 0.000000 0.757576 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.363636 0.000000 0.636364 0.090909 0.000000 0.909091 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-1 regular expression -------------------------------------------------------------------------------- TGTGTG[TC]G -------------------------------------------------------------------------------- Time 7.58 secs. ******************************************************************************** ******************************************************************************** MOTIF CRCACACA MEME-2 width = 8 sites = 48 llr = 416 E-value = 2.4e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRCACACA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :5191a:8 pos.-specific C a:919:a1 probability G :5:::::1 matrix T :::::::: bits 2.0 * ** 1.8 * ** 1.6 * * ** 1.4 * ***** Relative 1.2 * ***** Entropy 1.0 ******** (12.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCACACA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:19275461-19275581 17 1.68e-05 ATgcagctcg cacacaca tgcacgcacg chr2L:19135048-19135168 2 1.68e-05 A CACACACA TGTACACACA chr3R:14057596-14057716 25 1.68e-05 ttctTCGGca cacacaca tacacacacT chr2L:6833915-6834035 48 1.68e-05 TGTATAGGTG CACACACA CCCCCGGAAA chr3L:2584571-2584691 4 1.68e-05 ACT CACACACA CACTTGTGCC chr2L:7976815-7976935 1 1.68e-05 . cacacaca cacgcgcacg chr2R:12970938-12971058 26 1.68e-05 CAGATACTCA CACACACA GCAGCGAACT chr3R:10616737-10616857 52 1.68e-05 cacgcacgca cacacaca ggcacacacT chrX:10735807-10735927 9 1.68e-05 cacacacg cacacaca GAAGCTTAGC chr3R:16848781-16848901 78 1.68e-05 CGCATCGATG CACACACA CAGATACAGT chr3L:11342799-11342919 25 1.68e-05 GGTAAGCACG CACACACA CGGTTTTCCT chr2R:12169128-12169248 88 1.68e-05 CACTTTGGCC CACACACA CACATACACA chr3L:3417217-3417337 53 1.68e-05 GTCGCACAAT CACACACA GATACACTAA chr3L:750979-751099 8 1.68e-05 acactcg cacacaca catactcact chr3R:13013144-13013264 1 1.68e-05 . cacacaca cacgcacaca chr3L:12804839-12804959 88 3.35e-05 tacacacgca cgcacaca cGGACGATCA chr2R:17458369-17458489 18 3.35e-05 AAACACGACG CGCACACA GACACGCACG chrX:10744359-10744479 82 3.35e-05 cgcaaagcaa cgCACACA CGAATGCCGA chrX:6866100-6866220 26 3.35e-05 tgcagacaga cgcacaca tgcaggcaCA chr3R:7000682-7000802 72 3.35e-05 Atcactcaca cgcacaca atcacaattc chr3L:10860192-10860312 31 3.35e-05 ATAATTGACA CGCACACA GGCAGACGCA chrX:12733864-12733984 65 3.35e-05 tataggcaaa cgcacaca tagacgtcta chr2R:6611235-6611355 74 3.35e-05 atccgaccca cgcacaca aacacacgac chr2L:171606-171726 23 6.70e-05 AAGACCAAGG CAAACACA GGCGGAAAGA chrX:19306693-19306813 76 6.70e-05 TGATTATATT CACACACC ATAAAGGAGT chr2R:6612933-6613053 11 6.70e-05 CGAAACCGCA CAAACACA CACGCGACTT chr3R:4996721-4996841 80 1.00e-04 TTCAAGAGTT CGAACACA TCTGCGATTT chr2R:11529676-11529796 29 1.00e-04 GCCTCTCTCT CGCACACC CCCTTTGACC chr2R:23203856-23203976 31 1.00e-04 CATTTTCGAT CGAACACA ACTATTTGAA chr3R:9344598-9344718 52 1.00e-04 AAATGGATGC CGCACACC CGTGCACCCG chr2L:14495062-14495182 80 1.00e-04 TGATTCGTTG CGAACACA GCCGTTTGGC chr4:508571-508691 3 1.00e-04 TT CGCACACC ACTGCGGCCT chr3R:7090411-7090531 103 1.00e-04 tcgcgagtgc cgaacaca ctcgccactc chr3L:11248450-11248570 20 1.00e-04 GGAAAATTGT CGCACACC ATCTCGTTCG chrX:12742346-12742466 66 1.00e-04 CAGCGCGCAT CGCACACC CGAGTTTTTA chr2L:11445523-11445643 93 1.17e-04 ACAAGAGTGA CACAAACA ATAACAGCCG chr3R:30765759-30765879 3 1.17e-04 CA CACAAACA GCGCCGCCCT chr3R:11648895-11649015 49 1.17e-04 TGTTGCAATA CACAAACA AACGGGATAC chr2R:16180477-16180597 27 1.17e-04 GTTGCCACAA CACAAACA GTGTTGACTT chr2R:5726905-5727025 60 1.33e-04 ATCCTGCTTG CACACACG CTCATTCCGC chr2R:19254140-19254260 8 1.33e-04 TCTCACT CACACACG ATCGTGTCAA chr2L:6817509-6817629 40 1.33e-04 GCTCCTTCAG CACACACG AGTCGGGCGA chrX:12720148-12720268 32 1.49e-04 AGAAAAGCCA CGCAAACa gagacaaaag chr2L:9158467-9158587 12 1.83e-04 GACACCCACC CACCCACA CTTGTGTGTA chr3L:15699760-15699880 52 1.83e-04 TTTAAACGAA CGCACACG TCCGTCGACG chrX:12665165-12665285 4 2.01e-04 TCT CGCCCACA CCAACGCATT chrX:10814167-10814287 4 2.01e-04 GCA CGCCCACA CAAGGGCTAA chr3R:22518464-22518584 37 2.01e-04 CCCTCGCCGC CGCCCACA GTGGGCGTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCACACA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:19275461-19275581 1.7e-05 16_[+2]_96 chr2L:19135048-19135168 1.7e-05 1_[+2]_111 chr3R:14057596-14057716 1.7e-05 24_[+2]_88 chr2L:6833915-6834035 1.7e-05 47_[+2]_65 chr3L:2584571-2584691 1.7e-05 3_[+2]_109 chr2L:7976815-7976935 1.7e-05 [+2]_112 chr2R:12970938-12971058 1.7e-05 25_[+2]_87 chr3R:10616737-10616857 1.7e-05 51_[+2]_61 chrX:10735807-10735927 1.7e-05 8_[+2]_104 chr3R:16848781-16848901 1.7e-05 77_[+2]_35 chr3L:11342799-11342919 1.7e-05 24_[+2]_88 chr2R:12169128-12169248 1.7e-05 87_[+2]_25 chr3L:3417217-3417337 1.7e-05 52_[+2]_60 chr3L:750979-751099 1.7e-05 7_[+2]_105 chr3R:13013144-13013264 1.7e-05 [+2]_112 chr3L:12804839-12804959 3.3e-05 87_[+2]_25 chr2R:17458369-17458489 3.3e-05 17_[+2]_95 chrX:10744359-10744479 3.3e-05 81_[+2]_31 chrX:6866100-6866220 3.3e-05 25_[+2]_87 chr3R:7000682-7000802 3.3e-05 71_[+2]_41 chr3L:10860192-10860312 3.3e-05 30_[+2]_82 chrX:12733864-12733984 3.3e-05 64_[+2]_48 chr2R:6611235-6611355 3.3e-05 73_[+2]_39 chr2L:171606-171726 6.7e-05 22_[+2]_90 chrX:19306693-19306813 6.7e-05 75_[+2]_37 chr2R:6612933-6613053 6.7e-05 10_[+2]_102 chr3R:4996721-4996841 0.0001 79_[+2]_33 chr2R:11529676-11529796 0.0001 28_[+2]_84 chr2R:23203856-23203976 0.0001 30_[+2]_82 chr3R:9344598-9344718 0.0001 51_[+2]_61 chr2L:14495062-14495182 0.0001 79_[+2]_33 chr4:508571-508691 0.0001 2_[+2]_110 chr3R:7090411-7090531 0.0001 102_[+2]_10 chr3L:11248450-11248570 0.0001 19_[+2]_93 chrX:12742346-12742466 0.0001 65_[+2]_47 chr2L:11445523-11445643 0.00012 92_[+2]_20 chr3R:30765759-30765879 0.00012 2_[+2]_110 chr3R:11648895-11649015 0.00012 48_[+2]_64 chr2R:16180477-16180597 0.00012 26_[+2]_86 chr2R:5726905-5727025 0.00013 59_[+2]_53 chr2R:19254140-19254260 0.00013 7_[+2]_105 chr2L:6817509-6817629 0.00013 39_[+2]_73 chrX:12720148-12720268 0.00015 31_[+2]_81 chr2L:9158467-9158587 0.00018 11_[+2]_101 chr3L:15699760-15699880 0.00018 51_[+2]_61 chrX:12665165-12665285 0.0002 3_[+2]_109 chrX:10814167-10814287 0.0002 3_[+2]_109 chr3R:22518464-22518584 0.0002 36_[+2]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCACACA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRCACACA width=8 seqs=48 chr2R:19275461-19275581 ( 17) CACACACA 1 chr2L:19135048-19135168 ( 2) CACACACA 1 chr3R:14057596-14057716 ( 25) CACACACA 1 chr2L:6833915-6834035 ( 48) CACACACA 1 chr3L:2584571-2584691 ( 4) CACACACA 1 chr2L:7976815-7976935 ( 1) CACACACA 1 chr2R:12970938-12971058 ( 26) CACACACA 1 chr3R:10616737-10616857 ( 52) CACACACA 1 chrX:10735807-10735927 ( 9) CACACACA 1 chr3R:16848781-16848901 ( 78) CACACACA 1 chr3L:11342799-11342919 ( 25) CACACACA 1 chr2R:12169128-12169248 ( 88) CACACACA 1 chr3L:3417217-3417337 ( 53) CACACACA 1 chr3L:750979-751099 ( 8) CACACACA 1 chr3R:13013144-13013264 ( 1) CACACACA 1 chr3L:12804839-12804959 ( 88) CGCACACA 1 chr2R:17458369-17458489 ( 18) CGCACACA 1 chrX:10744359-10744479 ( 82) CGCACACA 1 chrX:6866100-6866220 ( 26) CGCACACA 1 chr3R:7000682-7000802 ( 72) CGCACACA 1 chr3L:10860192-10860312 ( 31) CGCACACA 1 chrX:12733864-12733984 ( 65) CGCACACA 1 chr2R:6611235-6611355 ( 74) CGCACACA 1 chr2L:171606-171726 ( 23) CAAACACA 1 chrX:19306693-19306813 ( 76) CACACACC 1 chr2R:6612933-6613053 ( 11) CAAACACA 1 chr3R:4996721-4996841 ( 80) CGAACACA 1 chr2R:11529676-11529796 ( 29) CGCACACC 1 chr2R:23203856-23203976 ( 31) CGAACACA 1 chr3R:9344598-9344718 ( 52) CGCACACC 1 chr2L:14495062-14495182 ( 80) CGAACACA 1 chr4:508571-508691 ( 3) CGCACACC 1 chr3R:7090411-7090531 ( 103) CGAACACA 1 chr3L:11248450-11248570 ( 20) CGCACACC 1 chrX:12742346-12742466 ( 66) CGCACACC 1 chr2L:11445523-11445643 ( 93) CACAAACA 1 chr3R:30765759-30765879 ( 3) CACAAACA 1 chr3R:11648895-11649015 ( 49) CACAAACA 1 chr2R:16180477-16180597 ( 27) CACAAACA 1 chr2R:5726905-5727025 ( 60) CACACACG 1 chr2R:19254140-19254260 ( 8) CACACACG 1 chr2L:6817509-6817629 ( 40) CACACACG 1 chrX:12720148-12720268 ( 32) CGCAAACA 1 chr2L:9158467-9158587 ( 12) CACCCACA 1 chr3L:15699760-15699880 ( 52) CGCACACG 1 chrX:12665165-12665285 ( 4) CGCCCACA 1 chrX:10814167-10814287 ( 4) CGCCCACA 1 chr3R:22518464-22518584 ( 37) CGCCCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCACACA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2994 E= 2.4e-012 -1223 195 -1223 -1223 113 -1223 89 -1223 -99 176 -1223 -1223 189 -163 -1223 -1223 -125 180 -1223 -1223 201 -1223 -1223 -1223 -1223 195 -1223 -1223 168 -105 -157 -1223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCACACA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 2.4e-012 0.000000 1.000000 0.000000 0.000000 0.541667 0.000000 0.458333 0.000000 0.125000 0.875000 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.104167 0.895833 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.791667 0.125000 0.083333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCACACA MEME-2 regular expression -------------------------------------------------------------------------------- C[AG]CACACA -------------------------------------------------------------------------------- Time 13.92 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGMGAGA MEME-3 width = 8 sites = 31 llr = 281 E-value = 1.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a15:91a pos.-specific C :::4:::: probability G a:9:a19: matrix T :::1:::: bits 2.0 ** * * 1.8 ** * * 1.6 ** * * 1.4 *** **** Relative 1.2 *** **** Entropy 1.0 *** **** (13.1 bits) 0.8 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAGA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21618442-21618562 6 1.41e-05 acaga gagagaga gaaaaagaga chr2L:7976815-7976935 97 1.41e-05 GACGATGGGC GAGAGAGA AAGAGAGAGG chr2R:17028315-17028435 83 1.41e-05 gagagagagt gagagaga acgagcgcgg chrX:10814167-10814287 98 1.41e-05 TCATCAGCGG GAGAGAGA GTGTGTTATT chr3R:11648895-11649015 80 1.41e-05 GAACCCCGga gagagaga gagagagaga chr3R:10622245-10622365 45 1.41e-05 gagcgagaga gagagaga gcgagagggc chr3R:21637218-21637338 56 1.41e-05 GGGAAAGAGA GAGAGAGA GAATACCTAA chr2L:21846986-21847106 64 1.41e-05 GGGGGGGGGG GAGAGAGA CAGAAAAAGA chrX:12720148-12720268 80 1.41e-05 gaatgcccga gagagaga tggagagatc chrX:3378576-3378696 73 2.87e-05 CGTCACGTGC GAGCGAGA GCGGCGGTTG chr3R:16811837-16811957 57 2.87e-05 GCGCAGGTGC GAGCGAGA TGGCTGCTGG chr3L:748574-748694 9 2.87e-05 AAATTATT GAGCGAGA GTTACTGTTC chr3R:10617243-10617363 58 2.87e-05 AGTTGCGTTG GAGCGAGA GGCCCTAAGT chr3R:10535904-10536024 95 2.87e-05 TGGTGCGCCA GAGCGAGA CGAAGCTAGT chrX:12735251-12735371 46 2.87e-05 GCGGAAGACA GAGCGAGA GAGCGATAGC chr3R:6963290-6963410 26 2.87e-05 TGCTTCGTGC GAGCGAGA TGGCGAAGCT chr2L:11210410-11210530 113 4.28e-05 AAAAAAAAAC GAGTGAGA chr3R:11777165-11777285 97 4.28e-05 gtcgctgcTC GAGTGAGA GTGTATACCC chr3R:16833130-16833250 110 4.28e-05 CAATGGCATT GAGTGAGA CTC chrX:12665165-12665285 97 5.68e-05 TGGGGAGAAG GAGAGGGA GACCGAGCGA chr3R:8190981-8191101 60 5.68e-05 GCGAGTCGTA GAGAGGGA TGGCATGCTA chr2R:19275461-19275581 94 8.50e-05 GCAACTGCGC GAAAGAGA GGGCGCGAGG chr2L:11445523-11445643 36 8.50e-05 GTGCGGCACT GAGAGAAA TCGAGTGCTC chr2L:9158467-9158587 86 8.50e-05 AAAAAGGTGT GAAAGAGA GGCACGGCGC chrX:6868906-6869026 100 8.50e-05 TTGTGTGCCA GAAAGAGA AGGATCGAAC chr3R:13877277-13877397 88 9.96e-05 CCGTTGGAGT GAGCGGGA TGGGTGTTGG chr3L:12681507-12681627 61 9.96e-05 GGAATTTATA GAGCGGGA ATACTTTTGA chr3L:11366704-11366824 78 1.29e-04 CAGCGTGCGA GAACGAGA CTGCAAAACA chr2L:182776-182896 73 1.29e-04 GGTGGTCAGT GAGCGAAA TGCGCCGAGC chrX:17739173-17739293 84 1.29e-04 AAACTACACT GAGCGAAA AATAACAAAA chrX:12739186-12739306 35 1.29e-04 AGAAGCAAAA GAGCGAAA CGACGGACGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21618442-21618562 1.4e-05 5_[+3]_107 chr2L:7976815-7976935 1.4e-05 96_[+3]_16 chr2R:17028315-17028435 1.4e-05 82_[+3]_30 chrX:10814167-10814287 1.4e-05 97_[+3]_15 chr3R:11648895-11649015 1.4e-05 79_[+3]_33 chr3R:10622245-10622365 1.4e-05 44_[+3]_68 chr3R:21637218-21637338 1.4e-05 55_[+3]_57 chr2L:21846986-21847106 1.4e-05 63_[+3]_49 chrX:12720148-12720268 1.4e-05 79_[+3]_33 chrX:3378576-3378696 2.9e-05 72_[+3]_40 chr3R:16811837-16811957 2.9e-05 56_[+3]_56 chr3L:748574-748694 2.9e-05 8_[+3]_104 chr3R:10617243-10617363 2.9e-05 57_[+3]_55 chr3R:10535904-10536024 2.9e-05 94_[+3]_18 chrX:12735251-12735371 2.9e-05 45_[+3]_67 chr3R:6963290-6963410 2.9e-05 25_[+3]_87 chr2L:11210410-11210530 4.3e-05 112_[+3] chr3R:11777165-11777285 4.3e-05 96_[+3]_16 chr3R:16833130-16833250 4.3e-05 109_[+3]_3 chrX:12665165-12665285 5.7e-05 96_[+3]_16 chr3R:8190981-8191101 5.7e-05 59_[+3]_53 chr2R:19275461-19275581 8.5e-05 93_[+3]_19 chr2L:11445523-11445643 8.5e-05 35_[+3]_77 chr2L:9158467-9158587 8.5e-05 85_[+3]_27 chrX:6868906-6869026 8.5e-05 99_[+3]_13 chr3R:13877277-13877397 0.0001 87_[+3]_25 chr3L:12681507-12681627 0.0001 60_[+3]_52 chr3L:11366704-11366824 0.00013 77_[+3]_35 chr2L:182776-182896 0.00013 72_[+3]_40 chrX:17739173-17739293 0.00013 83_[+3]_29 chrX:12739186-12739306 0.00013 34_[+3]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGMGAGA width=8 seqs=31 chr3R:21618442-21618562 ( 6) GAGAGAGA 1 chr2L:7976815-7976935 ( 97) GAGAGAGA 1 chr2R:17028315-17028435 ( 83) GAGAGAGA 1 chrX:10814167-10814287 ( 98) GAGAGAGA 1 chr3R:11648895-11649015 ( 80) GAGAGAGA 1 chr3R:10622245-10622365 ( 45) GAGAGAGA 1 chr3R:21637218-21637338 ( 56) GAGAGAGA 1 chr2L:21846986-21847106 ( 64) GAGAGAGA 1 chrX:12720148-12720268 ( 80) GAGAGAGA 1 chrX:3378576-3378696 ( 73) GAGCGAGA 1 chr3R:16811837-16811957 ( 57) GAGCGAGA 1 chr3L:748574-748694 ( 9) GAGCGAGA 1 chr3R:10617243-10617363 ( 58) GAGCGAGA 1 chr3R:10535904-10536024 ( 95) GAGCGAGA 1 chrX:12735251-12735371 ( 46) GAGCGAGA 1 chr3R:6963290-6963410 ( 26) GAGCGAGA 1 chr2L:11210410-11210530 ( 113) GAGTGAGA 1 chr3R:11777165-11777285 ( 97) GAGTGAGA 1 chr3R:16833130-16833250 ( 110) GAGTGAGA 1 chrX:12665165-12665285 ( 97) GAGAGGGA 1 chr3R:8190981-8191101 ( 60) GAGAGGGA 1 chr2R:19275461-19275581 ( 94) GAAAGAGA 1 chr2L:11445523-11445643 ( 36) GAGAGAAA 1 chr2L:9158467-9158587 ( 86) GAAAGAGA 1 chrX:6868906-6869026 ( 100) GAAAGAGA 1 chr3R:13877277-13877397 ( 88) GAGCGGGA 1 chr3L:12681507-12681627 ( 61) GAGCGGGA 1 chr3L:11366704-11366824 ( 78) GAACGAGA 1 chr2L:182776-182896 ( 73) GAGCGAAA 1 chrX:17739173-17739293 ( 84) GAGCGAAA 1 chrX:12739186-12739306 ( 35) GAGCGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 1.7e-002 -1160 -1160 202 -1160 201 -1160 -1160 -1160 -94 -1160 182 -1160 97 70 -1160 -135 -1160 -1160 202 -1160 181 -1160 -94 -1160 -94 -1160 182 -1160 201 -1160 -1160 -1160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 1.7e-002 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.129032 0.000000 0.870968 0.000000 0.483871 0.419355 0.000000 0.096774 0.000000 0.000000 1.000000 0.000000 0.870968 0.000000 0.129032 0.000000 0.129032 0.000000 0.870968 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-3 regular expression -------------------------------------------------------------------------------- GAG[AC]GAGA -------------------------------------------------------------------------------- Time 20.17 secs. ******************************************************************************** ******************************************************************************** MOTIF TKYTGTTK MEME-4 width = 8 sites = 52 llr = 417 E-value = 4.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKYTGTTK MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 2:3::::: probability G :6::7::5 matrix T 847a3aa5 bits 2.0 * ** 1.8 * ** 1.6 * ** 1.4 * ** Relative 1.2 * **** Entropy 1.0 ******** (11.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTTGTTG consensus CTC T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYTGTTK MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11715544-11715664 86 2.77e-05 TTCATGCATA TGTTGTTG GTTGGTTAAA chrX:6855734-6855854 76 2.77e-05 ACTTTACAGT TGTTGTTG CTGTTGCTCT chr2R:9554138-9554258 22 2.77e-05 AGCGCGTGCT TGTTGTTG GTCTTTTTGC chr3R:16772001-16772121 35 2.77e-05 GCGGTGCTGC TGTTGTTG CATTCCGGCA chrX:2138629-2138749 39 2.77e-05 TAAACGAACC TGTTGTTG TACTTGTGTG chr2R:22686834-22686954 60 2.77e-05 GTTTGCTTTT TGTTGTTG CTGCGTTGTT chr2L:378090-378210 113 2.77e-05 GGGGATACAT TGTTGTTT chr2L:14495062-14495182 50 2.77e-05 CCCACTTGAA TGTTGTTT CTGATTTGAT chr3R:9027174-9027294 66 2.77e-05 GCGCCGTGCC TGTTGTTG TCAGCCCACG chr3R:15993239-15993359 61 2.77e-05 TTTCCGCGCC TGTTGTTG CTGCTGATGT chr3R:16254143-16254263 89 2.77e-05 ttgctgctgc tgttgttg ttgttgctat chrX:17659257-17659377 62 2.77e-05 TCATTTTGGG TGTTGTTG TCGCGGTGCT chr3R:13013144-13013264 108 2.77e-05 GCAACGGGAA TGTTGTTG GTATT chr3L:12693083-12693203 18 5.54e-05 TAGATACTTT TTTTGTTG CCCCCACCCC chr3L:6904107-6904227 52 5.54e-05 ATAGCAGCCA TTTTGTTT AGTGTCATCT chr2R:16848375-16848495 2 5.54e-05 t ttttgttt tttgtttttt chr3R:9882070-9882190 65 5.54e-05 ACAATTTTGA TTTTGTTT TGCGCCCATT chr3L:3417217-3417337 16 5.54e-05 tggttgttgc ttttgttg gtgGATCAGC chr3R:16747930-16748050 6 5.54e-05 AGTGA TTTTGTTG TCTTAACCGC chr3R:31311115-31311235 46 8.44e-05 CTCGGCCAGT TGCTGTTG GACCGTCGCA chr3R:21580224-21580344 32 8.44e-05 tgacagctgc tgctgttg ctactgctat chr3R:16703071-16703191 104 1.12e-04 GCCGCGTATG TGTTTTTG CGTTTGTGT chrX:5899345-5899465 107 1.12e-04 ACTCGCCGGT TGTTTTTT TCTTTT chrX:13625997-13626117 35 1.12e-04 TATTAGAACC TGTTTTTG TTTACTTGCA chr4:70374-70494 67 1.12e-04 TATTCTGCTT TGTTTTTG CTATTGCCGC chr3R:16824995-16825115 101 1.12e-04 CACATCGCAG TGTTTTTT GGTCGGCATT chr3R:10612809-10612929 71 1.12e-04 GAACCCCATT TGTTTTTT AGCCGTCGGA chr3L:4407125-4407245 38 1.70e-04 GCTCGTCAGT CGTTGTTG CTAGCATACG chr3R:30198945-30199065 77 1.70e-04 TGTAAACATC TTCTGTTG TATGCTAAAC chr2L:8088260-8088380 88 1.70e-04 GTTCGCTCTG TTCTGTTT GCCTCGTTTT chr3L:17007364-17007484 42 1.70e-04 ATGTGCTGAT TTCTGTTT GCACATAACT chr3R:16012250-16012370 38 1.70e-04 GCGTCGCCGT CGTTGTTG TCATCGCAAG chr2R:6612933-6613053 112 1.70e-04 tcttTCTCAT CGTTGTTT C chrX:17830769-17830889 75 1.70e-04 CGCTGGCGAA CGTTGTTG CGATCACAAC chr3L:11342799-11342919 79 1.70e-04 TTGCCAGAAC TTCTGTTT GTCGTCAGTC chr3L:647220-647340 53 1.70e-04 ctctttccaa ttctgttt cagttcagtt chrX:6871802-6871922 1 1.98e-04 . TTTTTTTT CTAGCTGATT chr2R:22387320-22387440 108 2.56e-04 TTCTCGTAAA CTTTGTTG GGACG chr2L:16271594-16271714 35 2.56e-04 CTCACTCAGC TGCTTTTG CTGGGCGCCA chr2L:12463151-12463271 52 2.56e-04 AATGCATATT CTTTGTTT CTGTATTTGT chr2L:6817509-6817629 9 2.56e-04 GTTTTTAA TGCTTTTT GGCATACGTC chr3R:22518464-22518584 83 2.56e-04 ACTCTCGACA CTTTGTTT AAACTGCAGA chr3R:5086544-5086664 9 2.56e-04 TTAACCGT TGCTTTTT AGCTACTCCT chr2R:11529676-11529796 66 2.86e-04 TTACACATTC CGCTGTTG CCGTCGGCAG chr3L:22407766-22407886 14 2.86e-04 TGAAGCAACG CGCTGTTT TCGCTACTTT chr3L:630782-630902 91 2.86e-04 AAGGGGTTTT CGCTGTTT TCGGGCTTTC chr3R:6992097-6992217 105 2.86e-04 ggattATGGC CGCTGTTT CTGCCGCC chr3L:4363997-4364117 61 3.44e-04 ACTTTCCGCT CGTTTTTT CACTTCGGCA chr2R:15922025-15922145 43 3.44e-04 TATACTATAA TTCTTTTT GGACGCTCTA chr3R:17054001-17054121 43 3.44e-04 CGCTTGTGTG TTCTTTTG CCGTTCGAGA chr4:60130-60250 85 3.44e-04 TGAATCCAGT TTCTTTTT CGATTAAGAC chrX:10814167-10814287 64 3.44e-04 AACGACAGCT TTCTTTTT CGGCTATTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYTGTTK MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11715544-11715664 2.8e-05 85_[+4]_27 chrX:6855734-6855854 2.8e-05 75_[+4]_37 chr2R:9554138-9554258 2.8e-05 21_[+4]_91 chr3R:16772001-16772121 2.8e-05 34_[+4]_78 chrX:2138629-2138749 2.8e-05 38_[+4]_74 chr2R:22686834-22686954 2.8e-05 59_[+4]_53 chr2L:378090-378210 2.8e-05 112_[+4] chr2L:14495062-14495182 2.8e-05 49_[+4]_63 chr3R:9027174-9027294 2.8e-05 65_[+4]_47 chr3R:15993239-15993359 2.8e-05 60_[+4]_52 chr3R:16254143-16254263 2.8e-05 88_[+4]_24 chrX:17659257-17659377 2.8e-05 61_[+4]_51 chr3R:13013144-13013264 2.8e-05 107_[+4]_5 chr3L:12693083-12693203 5.5e-05 17_[+4]_95 chr3L:6904107-6904227 5.5e-05 51_[+4]_61 chr2R:16848375-16848495 5.5e-05 1_[+4]_111 chr3R:9882070-9882190 5.5e-05 64_[+4]_48 chr3L:3417217-3417337 5.5e-05 15_[+4]_97 chr3R:16747930-16748050 5.5e-05 5_[+4]_107 chr3R:31311115-31311235 8.4e-05 45_[+4]_67 chr3R:21580224-21580344 8.4e-05 31_[+4]_81 chr3R:16703071-16703191 0.00011 103_[+4]_9 chrX:5899345-5899465 0.00011 106_[+4]_6 chrX:13625997-13626117 0.00011 34_[+4]_78 chr4:70374-70494 0.00011 66_[+4]_46 chr3R:16824995-16825115 0.00011 100_[+4]_12 chr3R:10612809-10612929 0.00011 70_[+4]_42 chr3L:4407125-4407245 0.00017 37_[+4]_75 chr3R:30198945-30199065 0.00017 76_[+4]_36 chr2L:8088260-8088380 0.00017 87_[+4]_25 chr3L:17007364-17007484 0.00017 41_[+4]_71 chr3R:16012250-16012370 0.00017 37_[+4]_75 chr2R:6612933-6613053 0.00017 111_[+4]_1 chrX:17830769-17830889 0.00017 74_[+4]_38 chr3L:11342799-11342919 0.00017 78_[+4]_34 chr3L:647220-647340 0.00017 52_[+4]_60 chrX:6871802-6871922 0.0002 [+4]_112 chr2R:22387320-22387440 0.00026 107_[+4]_5 chr2L:16271594-16271714 0.00026 34_[+4]_78 chr2L:12463151-12463271 0.00026 51_[+4]_61 chr2L:6817509-6817629 0.00026 8_[+4]_104 chr3R:22518464-22518584 0.00026 82_[+4]_30 chr3R:5086544-5086664 0.00026 8_[+4]_104 chr2R:11529676-11529796 0.00029 65_[+4]_47 chr3L:22407766-22407886 0.00029 13_[+4]_99 chr3L:630782-630902 0.00029 90_[+4]_22 chr3R:6992097-6992217 0.00029 104_[+4]_8 chr3L:4363997-4364117 0.00034 60_[+4]_52 chr2R:15922025-15922145 0.00034 42_[+4]_70 chr3R:17054001-17054121 0.00034 42_[+4]_70 chr4:60130-60250 0.00034 84_[+4]_28 chrX:10814167-10814287 0.00034 63_[+4]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYTGTTK MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKYTGTTK width=8 seqs=52 chrX:11715544-11715664 ( 86) TGTTGTTG 1 chrX:6855734-6855854 ( 76) TGTTGTTG 1 chr2R:9554138-9554258 ( 22) TGTTGTTG 1 chr3R:16772001-16772121 ( 35) TGTTGTTG 1 chrX:2138629-2138749 ( 39) TGTTGTTG 1 chr2R:22686834-22686954 ( 60) TGTTGTTG 1 chr2L:378090-378210 ( 113) TGTTGTTT 1 chr2L:14495062-14495182 ( 50) TGTTGTTT 1 chr3R:9027174-9027294 ( 66) TGTTGTTG 1 chr3R:15993239-15993359 ( 61) TGTTGTTG 1 chr3R:16254143-16254263 ( 89) TGTTGTTG 1 chrX:17659257-17659377 ( 62) TGTTGTTG 1 chr3R:13013144-13013264 ( 108) TGTTGTTG 1 chr3L:12693083-12693203 ( 18) TTTTGTTG 1 chr3L:6904107-6904227 ( 52) TTTTGTTT 1 chr2R:16848375-16848495 ( 2) TTTTGTTT 1 chr3R:9882070-9882190 ( 65) TTTTGTTT 1 chr3L:3417217-3417337 ( 16) TTTTGTTG 1 chr3R:16747930-16748050 ( 6) TTTTGTTG 1 chr3R:31311115-31311235 ( 46) TGCTGTTG 1 chr3R:21580224-21580344 ( 32) TGCTGTTG 1 chr3R:16703071-16703191 ( 104) TGTTTTTG 1 chrX:5899345-5899465 ( 107) TGTTTTTT 1 chrX:13625997-13626117 ( 35) TGTTTTTG 1 chr4:70374-70494 ( 67) TGTTTTTG 1 chr3R:16824995-16825115 ( 101) TGTTTTTT 1 chr3R:10612809-10612929 ( 71) TGTTTTTT 1 chr3L:4407125-4407245 ( 38) CGTTGTTG 1 chr3R:30198945-30199065 ( 77) TTCTGTTG 1 chr2L:8088260-8088380 ( 88) TTCTGTTT 1 chr3L:17007364-17007484 ( 42) TTCTGTTT 1 chr3R:16012250-16012370 ( 38) CGTTGTTG 1 chr2R:6612933-6613053 ( 112) CGTTGTTT 1 chrX:17830769-17830889 ( 75) CGTTGTTG 1 chr3L:11342799-11342919 ( 79) TTCTGTTT 1 chr3L:647220-647340 ( 53) TTCTGTTT 1 chrX:6871802-6871922 ( 1) TTTTTTTT 1 chr2R:22387320-22387440 ( 108) CTTTGTTG 1 chr2L:16271594-16271714 ( 35) TGCTTTTG 1 chr2L:12463151-12463271 ( 52) CTTTGTTT 1 chr2L:6817509-6817629 ( 9) TGCTTTTT 1 chr3R:22518464-22518584 ( 83) CTTTGTTT 1 chr3R:5086544-5086664 ( 9) TGCTTTTT 1 chr2R:11529676-11529796 ( 66) CGCTGTTG 1 chr3L:22407766-22407886 ( 14) CGCTGTTT 1 chr3L:630782-630902 ( 91) CGCTGTTT 1 chr3R:6992097-6992217 ( 105) CGCTGTTT 1 chr3L:4363997-4364117 ( 61) CGTTTTTT 1 chr2R:15922025-15922145 ( 43) TTCTTTTT 1 chr3R:17054001-17054121 ( 43) TTCTTTTG 1 chr4:60130-60250 ( 85) TTCTTTTT 1 chrX:10814167-10814287 ( 64) TTCTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYTGTTK MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7147 E= 4.9e-001 -1234 -16 -1234 164 -1234 -1234 136 56 -1234 42 -1234 140 -1234 -1234 -1234 202 -1234 -1234 153 22 -1234 -1234 -1234 202 -1234 -1234 -1234 202 -1234 -1234 107 96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYTGTTK MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 4.9e-001 0.000000 0.230769 0.000000 0.769231 0.000000 0.000000 0.634615 0.365385 0.000000 0.346154 0.000000 0.653846 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.711538 0.288462 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.519231 0.480769 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYTGTTK MEME-4 regular expression -------------------------------------------------------------------------------- [TC][GT][TC]T[GT]TT[GT] -------------------------------------------------------------------------------- Time 26.34 secs. ******************************************************************************** ******************************************************************************** MOTIF AAMAAMAA MEME-5 width = 8 sites = 29 llr = 257 E-value = 1.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAMAAMAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A aa3aa48a pos.-specific C ::5::62: probability G :::::::: matrix T ::2::::: bits 2.0 ** ** * 1.8 ** ** * 1.6 ** ** * 1.4 ** ** * Relative 1.2 ** ** ** Entropy 1.0 ** ***** (12.8 bits) 0.8 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AACAACAA consensus A AC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMAAMAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21618442-21618562 86 1.55e-05 GAAGAAGAAG AACAACAA CAGCCCAAGA chr2L:1627895-1628015 76 1.55e-05 CAAATACAAC AACAACAA CAAATAGTAG chr2L:12463151-12463271 30 1.55e-05 AAACTAAGTC AACAACAA AAACAATGCA chr3R:7000682-7000802 28 1.55e-05 GAAGCGCGCC AACAACAA ATCACATGCA chr2L:4031378-4031498 103 1.55e-05 CGTGTGTGCG AACAACAA CTCAGCAGCA chr2L:7038636-7038756 42 1.55e-05 TGCCCCATTA AACAACAA CAACAAGCGA chr3L:15589615-15589735 83 1.55e-05 GTGCAAGCAC AACAACAA CATTCCCGGG chr2L:21899125-21899245 51 1.55e-05 CTTTGGCACC AACAACAA TTAACCCTCC chr2L:9158467-9158587 73 3.04e-05 CGAATCATTG AACAAAAA GGTGTGAAAG chr3R:8848237-8848357 108 3.04e-05 ATTCCACTCA AACAAAAA ACACA chr3L:4363997-4364117 28 4.53e-05 TGGCGTGCGA AAAAACAA TTTTATCCGC chr3L:15824641-15824761 78 4.53e-05 GGCCTCTAAA AAAAACAA TTGAAAGCAG chrX:13822212-13822332 32 7.44e-05 CGCAGTGTTT AAAAAAAA TATGCCGTTC chr2L:11210410-11210530 104 7.44e-05 GATGGGGCTA AAAAAAAA CGAGTGAGA chr3L:16049143-16049263 49 7.44e-05 TTCAGGGCCA AAAAAAAA GGAAGGAAAG chr3R:6963290-6963410 112 7.44e-05 GGTCGGAAGA AAAAAAAA A chrX:17739173-17739293 92 7.44e-05 CTGAGCGAAA AATAACAA AATGTTGCAA chr3R:16734330-16734450 15 7.44e-05 GAGGGCCAAT AATAACAA TAATGCCGCT chr2R:22387320-22387440 9 1.05e-04 GGAATACG AATAAAAA ATGAATATCG chr3R:4996721-4996841 8 1.05e-04 GCAGGGA AATAAAAA GCGAGCACTA chr3R:30198945-30199065 36 1.05e-04 TGCCAAAGCA AACAACCA AAGGCTAATA chr2R:9565889-9566009 23 1.05e-04 AATGCGCCCC AACAACCA GGCAGAAGAA chrX:2138629-2138749 19 1.05e-04 ACCCTGCTGT AATAAAAA TTTAAACGAA chrX:12716871-12716991 94 1.05e-04 GTTGCACAGC AACAACCA CAGGCTCGTT chrX:2140620-2140740 36 1.05e-04 GATCGAAGCG AATAAAAA ATGGGCGCAC chr3L:11366704-11366824 92 1.20e-04 GAGACTGCAA AACAAACA AGATTCGGCA chr2R:17458369-17458489 49 1.20e-04 GTACCGTACA AACAAACA GACGTGCGGA chr3R:10614201-10614321 73 1.36e-04 TATTTCATCG AAAAACCA ACCCGCCAGA chr3R:16275491-16275611 8 1.36e-04 CGTGCTA AAAAACCA TTGCCACTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMAAMAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21618442-21618562 1.5e-05 85_[+5]_27 chr2L:1627895-1628015 1.5e-05 75_[+5]_37 chr2L:12463151-12463271 1.5e-05 29_[+5]_83 chr3R:7000682-7000802 1.5e-05 27_[+5]_85 chr2L:4031378-4031498 1.5e-05 102_[+5]_10 chr2L:7038636-7038756 1.5e-05 41_[+5]_71 chr3L:15589615-15589735 1.5e-05 82_[+5]_30 chr2L:21899125-21899245 1.5e-05 50_[+5]_62 chr2L:9158467-9158587 3e-05 72_[+5]_40 chr3R:8848237-8848357 3e-05 107_[+5]_5 chr3L:4363997-4364117 4.5e-05 27_[+5]_85 chr3L:15824641-15824761 4.5e-05 77_[+5]_35 chrX:13822212-13822332 7.4e-05 31_[+5]_81 chr2L:11210410-11210530 7.4e-05 103_[+5]_9 chr3L:16049143-16049263 7.4e-05 48_[+5]_64 chr3R:6963290-6963410 7.4e-05 111_[+5]_1 chrX:17739173-17739293 7.4e-05 91_[+5]_21 chr3R:16734330-16734450 7.4e-05 14_[+5]_98 chr2R:22387320-22387440 0.0001 8_[+5]_104 chr3R:4996721-4996841 0.0001 7_[+5]_105 chr3R:30198945-30199065 0.0001 35_[+5]_77 chr2R:9565889-9566009 0.0001 22_[+5]_90 chrX:2138629-2138749 0.0001 18_[+5]_94 chrX:12716871-12716991 0.0001 93_[+5]_19 chrX:2140620-2140740 0.0001 35_[+5]_77 chr3L:11366704-11366824 0.00012 91_[+5]_21 chr2R:17458369-17458489 0.00012 48_[+5]_64 chr3R:10614201-10614321 0.00014 72_[+5]_40 chr3R:16275491-16275611 0.00014 7_[+5]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMAAMAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAMAAMAA width=8 seqs=29 chr3R:21618442-21618562 ( 86) AACAACAA 1 chr2L:1627895-1628015 ( 76) AACAACAA 1 chr2L:12463151-12463271 ( 30) AACAACAA 1 chr3R:7000682-7000802 ( 28) AACAACAA 1 chr2L:4031378-4031498 ( 103) AACAACAA 1 chr2L:7038636-7038756 ( 42) AACAACAA 1 chr3L:15589615-15589735 ( 83) AACAACAA 1 chr2L:21899125-21899245 ( 51) AACAACAA 1 chr2L:9158467-9158587 ( 73) AACAAAAA 1 chr3R:8848237-8848357 ( 108) AACAAAAA 1 chr3L:4363997-4364117 ( 28) AAAAACAA 1 chr3L:15824641-15824761 ( 78) AAAAACAA 1 chrX:13822212-13822332 ( 32) AAAAAAAA 1 chr2L:11210410-11210530 ( 104) AAAAAAAA 1 chr3L:16049143-16049263 ( 49) AAAAAAAA 1 chr3R:6963290-6963410 ( 112) AAAAAAAA 1 chrX:17739173-17739293 ( 92) AATAACAA 1 chr3R:16734330-16734450 ( 15) AATAACAA 1 chr2R:22387320-22387440 ( 9) AATAAAAA 1 chr3R:4996721-4996841 ( 8) AATAAAAA 1 chr3R:30198945-30199065 ( 36) AACAACCA 1 chr2R:9565889-9566009 ( 23) AACAACCA 1 chrX:2138629-2138749 ( 19) AATAAAAA 1 chrX:12716871-12716991 ( 94) AACAACCA 1 chrX:2140620-2140740 ( 36) AATAAAAA 1 chr3L:11366704-11366824 ( 92) AACAAACA 1 chr2R:17458369-17458489 ( 49) AACAAACA 1 chr3R:10614201-10614321 ( 73) AAAAACCA 1 chr3R:16275491-16275611 ( 8) AAAAACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMAAMAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 1.4e+003 201 -1150 -1150 -1150 201 -1150 -1150 -1150 16 100 -1150 -26 201 -1150 -1150 -1150 201 -1150 -1150 -1150 74 118 -1150 -1150 161 -10 -1150 -1150 201 -1150 -1150 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMAAMAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 1.4e+003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.275862 0.517241 0.000000 0.206897 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.413793 0.586207 0.000000 0.000000 0.758621 0.241379 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMAAMAA MEME-5 regular expression -------------------------------------------------------------------------------- AA[CAT]AA[CA][AC]A -------------------------------------------------------------------------------- Time 32.44 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10612809-10612929 8.94e-02 120 chr3R:10610388-10610508 9.17e-01 120 chr2L:163383-163503 4.65e-01 120 chr3R:16734330-16734450 1.27e-01 14_[+5(7.44e-05)]_98 chr3R:6966679-6966799 9.77e-01 120 chr3R:16833130-16833250 3.71e-02 109_[+3(4.28e-05)]_3 chrX:12720148-12720268 5.19e-03 55_[+3(4.28e-05)]_14_[+3(1.41e-05)]_\ 12_[+3(1.41e-05)]_[+3(1.41e-05)]_7 chr2L:21830389-21830509 1.36e-01 120 chrX:2140620-2140740 6.03e-02 120 chrX:2125662-2125782 1.94e-01 120 chr2R:12956317-12956437 3.19e-01 120 chr3L:647220-647340 3.62e-02 120 chrX:12749137-12749257 3.39e-02 110_[+1(2.83e-05)]_2 chr4:502765-502885 2.15e-02 120 chr3R:10605159-10605279 3.17e-01 74_[+1(7.18e-05)]_38 chr3R:13013144-13013264 2.78e-03 [+2(1.68e-05)]_2_[+2(3.35e-05)]_89_\ [+4(2.77e-05)]_5 chrX:12739186-12739306 9.04e-02 120 chr3R:5086544-5086664 3.77e-01 120 chr3R:6815283-6815403 9.82e-01 120 chr2L:20783266-20783386 8.68e-01 120 chr3R:16747930-16748050 2.28e-02 5_[+4(5.54e-05)]_107 chr3L:750979-751099 4.27e-02 7_[+2(1.68e-05)]_105 chr3R:16824995-16825115 6.94e-02 120 chr3L:3417217-3417337 6.08e-05 15_[+4(5.54e-05)]_29_[+2(1.68e-05)]_\ 41_[+1(2.83e-05)]_[+1(1.39e-05)]_3 chr3R:16850087-16850207 6.66e-01 120 chr3R:21635840-21635960 9.99e-01 120 chrX:6857809-6857929 3.12e-01 120 chr4:491042-491162 9.59e-01 120 chrX:12742346-12742466 3.06e-01 120 chrX:3405625-3405745 8.86e-01 120 chr3R:9034960-9035080 9.83e-01 120 chr4:70374-70494 1.79e-01 120 chr4:73074-73194 1.95e-01 120 chr3R:16826145-16826265 8.59e-01 120 chr3R:6932747-6932867 5.13e-01 120 chr3R:10596541-10596661 7.82e-01 120 chr2L:21899125-21899245 2.95e-02 50_[+5(1.55e-05)]_62 chr3L:11248450-11248570 1.56e-01 120 chr3R:5032508-5032628 8.77e-01 120 chr3R:9882070-9882190 3.30e-01 64_[+4(5.54e-05)]_48 chr3R:5077476-5077596 8.29e-01 120 chr3R:16243928-16244048 6.53e-01 120 chr3R:5083355-5083475 6.35e-01 120 chr3L:15589615-15589735 1.93e-02 82_[+5(1.55e-05)]_30 chr2L:165518-165638 5.46e-01 120 chr3L:12681507-12681627 1.57e-01 45_[+3(9.96e-05)]_7_[+3(9.96e-05)]_\ 52 chrX:12716091-12716211 5.25e-02 5_[+1(7.18e-05)]_107 chr3R:24577395-24577515 2.29e-01 120 chrX:6868906-6869026 4.97e-04 40_[+1(1.39e-05)]_[+1(1.39e-05)]_\ [+1(1.39e-05)]_35_[+3(8.50e-05)]_13 chr3R:16256149-16256269 3.96e-01 120 chr2R:6611235-6611355 1.99e-03 33_[+1(1.39e-05)]_32_[+2(3.35e-05)]_\ 39 chr3R:22152315-22152435 4.39e-01 120 chr3R:16857141-16857261 1.91e-01 120 chr2R:6218514-6218634 5.81e-01 120 chr2R:12169128-12169248 4.73e-02 87_[+2(1.68e-05)]_25 chr3R:10662250-10662370 5.32e-01 120 chr2L:1653241-1653361 1.28e-01 120 chrX:12716871-12716991 1.09e-02 51_[+2(1.68e-05)]_[+2(1.68e-05)]_53 chrX:7708167-7708287 9.44e-01 120 chr2L:21828990-21829110 9.05e-01 120 chr2L:21846986-21847106 1.53e-02 63_[+3(1.41e-05)]_49 chr3R:4911230-4911350 6.84e-01 120 chrX:16216601-16216721 6.84e-01 120 chr3R:16913723-16913843 6.95e-01 120 chr2L:21829745-21829865 8.12e-01 120 chr2L:14024553-14024673 9.98e-01 120 chr3R:21604686-21604806 9.27e-01 120 chr3L:11257693-11257813 2.50e-01 120 chr3R:16275491-16275611 3.07e-01 120 chr4:506321-506441 7.09e-02 23_[+1(5.67e-05)]_89 chr3L:10680949-10681069 1.75e-01 120 chrX:17659257-17659377 1.22e-01 2_[+4(5.54e-05)]_51_[+4(2.77e-05)]_\ 51 chrX:6997112-6997232 8.10e-01 120 chrX:6871802-6871922 4.50e-02 120 chr3R:13877277-13877397 5.16e-03 15_[+1(2.83e-05)]_64_[+3(9.96e-05)]_\ 25 chr3L:11342799-11342919 1.31e-02 24_[+2(1.68e-05)]_88 chr3R:10614201-10614321 5.97e-02 120 chrX:12724489-12724609 2.14e-01 120 chrX:17739173-17739293 3.42e-04 48_[+1(1.39e-05)]_35_[+5(7.44e-05)]_\ 21 chr3R:5085421-5085541 3.92e-01 120 chr3R:16848781-16848901 7.94e-02 77_[+2(1.68e-05)]_35 chr3L:698949-699069 9.83e-02 120 chr3L:11489670-11489790 7.32e-01 120 chr2R:18141293-18141413 6.83e-02 120 chr4:844577-844697 2.24e-01 120 chr3R:21615338-21615458 8.99e-01 120 chr3R:7011146-7011266 1.12e-01 105_[+1(1.39e-05)]_7 chrX:3748828-3748948 4.91e-01 120 chr2L:7038636-7038756 4.25e-04 41_[+5(1.55e-05)]_47_[+1(1.39e-05)]_\ 16 chr3R:16847430-16847550 1.42e-01 120 chr3R:16934835-16934955 7.64e-01 120 chr3L:22948209-22948329 2.34e-02 14_[+1(8.57e-05)]_98 chrX:10735807-10735927 4.50e-04 8_[+2(1.68e-05)]_104 chr2L:1651223-1651343 3.06e-01 120 chrX:12733864-12733984 8.22e-02 64_[+2(3.35e-05)]_48 chr3R:16274795-16274915 5.27e-03 81_[+1(5.67e-05)]_14_[+1(4.28e-05)]_\ 9 chr3R:16254143-16254263 1.20e-01 73_[+4(8.44e-05)]_7_[+4(2.77e-05)]_\ 24 chr3R:22518464-22518584 5.28e-02 120 chr3R:7090411-7090531 9.90e-02 120 chr3R:21637218-21637338 3.30e-02 51_[+3(1.41e-05)]_61 chr4:508571-508691 1.42e-01 120 chr3R:10616737-10616857 1.11e-01 49_[+2(1.68e-05)]_63 chr2L:1654394-1654514 4.13e-01 120 chr3L:7947950-7948070 9.80e-01 120 chr2L:182776-182896 1.55e-01 120 chr3L:10860192-10860312 1.94e-01 30_[+2(3.35e-05)]_82 chr3R:10354413-10354533 4.40e-01 120 chr2L:12464105-12464225 1.99e-01 120 chr2L:4031378-4031498 1.01e-03 94_[+1(2.83e-05)]_[+5(1.55e-05)]_10 chr3R:7000682-7000802 2.58e-03 27_[+5(1.55e-05)]_10_[+2(3.35e-05)]_\ 18_[+2(3.35e-05)]_41 chr3R:16850691-16850811 4.77e-02 49_[+1(2.83e-05)]_63 chr2R:12970938-12971058 3.06e-02 23_[+2(1.68e-05)]_89 chr3R:15993239-15993359 1.03e-02 60_[+4(2.77e-05)]_52 chr2R:16180477-16180597 1.07e-01 120 chrX:6868436-6868556 7.58e-02 120 chr3R:10622245-10622365 2.93e-02 38_[+3(1.41e-05)]_4_[+3(2.87e-05)]_\ 62 chr3R:6963290-6963410 3.60e-03 25_[+3(2.87e-05)]_13_[+3(4.28e-05)]_\ 56_[+5(7.44e-05)]_2 chr3R:9027174-9027294 3.52e-03 65_[+4(2.77e-05)]_10_[+1(4.28e-05)]_\ 29 chr3R:16830130-16830250 1.27e-01 120 chr3L:16049143-16049263 1.71e-02 47_[+5(7.44e-05)]_65 chrX:17830769-17830889 3.11e-01 120 chr3R:8848237-8848357 4.73e-02 107_[+5(3.04e-05)]_5 chr2L:14495062-14495182 5.51e-03 49_[+4(2.77e-05)]_63 chrX:580679-580799 2.63e-02 120 chr3R:6978509-6978629 6.30e-01 120 chrX:6866100-6866220 7.95e-02 25_[+2(3.35e-05)]_87 chr2L:3825618-3825738 5.28e-02 120 chr3R:9344598-9344718 8.57e-03 120 chr2R:6612933-6613053 1.93e-02 10_[+2(6.70e-05)]_102 chr2L:3836782-3836902 7.22e-02 120 chrX:12735251-12735371 1.27e-01 45_[+3(2.87e-05)]_67 chrX:10744359-10744479 2.81e-02 22_[+2(6.70e-05)]_51_[+2(3.35e-05)]_\ 31 chr2R:13822860-13822980 2.78e-01 120 chr3R:8190981-8191101 2.37e-02 59_[+3(5.68e-05)]_53 chr3R:11648895-11649015 3.47e-03 77_[+3(1.41e-05)]_[+3(1.41e-05)]_\ [+3(1.41e-05)]_[+3(5.68e-05)]_11 chr2L:21051912-21052032 3.30e-01 120 chr3R:10535904-10536024 6.44e-02 94_[+3(2.87e-05)]_18 chrX:6853520-6853640 5.20e-02 106_[+1(1.39e-05)]_6 chr3R:6992097-6992217 3.96e-02 120 chr3L:11323630-11323750 8.97e-01 120 chr2L:6817509-6817629 1.45e-02 120 chr2L:378090-378210 1.33e-01 112_[+4(2.77e-05)] chr2R:14481236-14481356 1.34e-01 120 chr3L:6790112-6790232 7.16e-01 120 chr3R:16012250-16012370 2.60e-01 120 chrX:10814167-10814287 3.01e-04 97_[+3(1.41e-05)]_15 chr3R:10617243-10617363 5.74e-02 26_[+3(2.87e-05)]_23_[+3(2.87e-05)]_\ 55 chr4:60130-60250 2.83e-01 120 chr2R:19254140-19254260 2.04e-01 120 chr2R:22243935-22244055 7.69e-01 120 chr3L:630782-630902 1.70e-01 120 chr3R:11777165-11777285 7.01e-02 96_[+3(4.28e-05)]_16 chr2R:17028315-17028435 3.89e-03 72_[+3(1.41e-05)]_2_[+3(1.41e-05)]_\ 30 chr3R:16782518-16782638 9.88e-01 120 chr3L:748574-748694 8.89e-03 8_[+3(2.87e-05)]_104 chr3R:16811837-16811957 5.29e-02 56_[+3(2.87e-05)]_56 chr3L:19845626-19845746 7.90e-01 120 chr2R:15931336-15931456 1.56e-01 120 chrX:7608423-7608543 2.49e-01 120 chrX:13642125-13642245 5.85e-01 120 chr3L:12609627-12609747 7.23e-01 120 chr3L:16045135-16045255 2.95e-03 120 chr3L:15824641-15824761 3.72e-02 77_[+5(4.53e-05)]_35 chr2R:22686834-22686954 4.92e-04 16_[+1(1.39e-05)]_10_[+1(1.39e-05)]_\ 17_[+4(2.77e-05)]_53 chr3R:16211271-16211391 2.69e-02 120 chr2L:13878921-13879041 7.93e-01 120 chrX:2138629-2138749 8.60e-03 38_[+4(2.77e-05)]_49_[+4(5.54e-05)]_\ 17 chr2R:14219847-14219967 6.84e-01 120 chr2R:9565889-9566009 1.43e-02 120 chrX:12665165-12665285 1.94e-02 96_[+3(5.68e-05)]_16 chr3L:15699760-15699880 1.27e-01 120 chr2L:7976815-7976935 3.70e-03 [+2(1.68e-05)]_24_[+2(3.35e-05)]_56_\ [+3(1.41e-05)]_16 chr3L:22407766-22407886 2.23e-01 120 chr3L:17007364-17007484 1.04e-01 120 chr3R:5367672-5367792 2.51e-03 82_[+1(8.57e-05)]_14_[+1(2.83e-05)]_\ [+1(4.28e-05)] chr2L:8088260-8088380 2.85e-02 33_[+1(2.83e-05)]_79 chr3R:30198945-30199065 2.37e-02 120 chr2R:21702855-21702975 6.14e-01 120 chr2L:6536193-6536313 1.17e-01 120 chr3L:2584571-2584691 1.00e-02 3_[+2(1.68e-05)]_109 chr3R:16882590-16882710 5.81e-01 120 chr2L:3771060-3771180 8.96e-01 120 chr2L:8083725-8083845 1.92e-02 92_[+1(1.39e-05)]_20 chr3R:30765759-30765879 2.85e-01 120 chr3R:16748942-16749062 2.47e-01 120 chr2R:23615279-23615399 8.06e-01 120 chr2L:9158467-9158587 3.51e-05 21_[+1(8.57e-05)]_43_[+5(3.04e-05)]_\ 5_[+3(8.50e-05)]_16_[+3(8.50e-05)]_3 chr2L:12463151-12463271 7.34e-04 29_[+5(1.55e-05)]_83 chr2R:17458369-17458489 4.06e-03 17_[+2(3.35e-05)]_95 chr2R:16848375-16848495 9.64e-02 1_[+4(5.54e-05)]_111 chr2L:11210410-11210530 1.39e-04 44_[+1(1.39e-05)]_[+1(1.39e-05)]_8_\ [+1(5.67e-05)]_26_[+5(7.44e-05)]_2_[+3(4.28e-05)] chr3L:160780-160900 8.76e-01 120 chr3L:11366704-11366824 1.01e-02 120 chr2R:10541589-10541709 9.98e-02 120 chr3L:14274833-14274953 6.12e-01 120 chr2R:22312751-22312871 1.93e-01 120 chrX:19306693-19306813 8.48e-02 75_[+2(6.70e-05)]_37 chr2R:9116542-9116662 7.28e-02 120 chr3R:16772001-16772121 1.76e-01 34_[+4(2.77e-05)]_78 chr2L:1627895-1628015 5.14e-02 72_[+5(1.55e-05)]_40 chr3L:548924-549044 3.77e-01 120 chr3R:9550597-9550717 5.06e-02 47_[+1(1.39e-05)]_65 chr2R:23203856-23203976 1.92e-01 120 chr4:59059-59179 4.16e-02 1_[+1(8.57e-05)]_111 chr3R:17054001-17054121 1.10e-02 120 chr2L:6833915-6834035 7.98e-03 10_[+2(3.35e-05)]_29_[+2(1.68e-05)]_\ 65 chr3L:6904107-6904227 1.92e-01 51_[+4(5.54e-05)]_61 chrX:13625997-13626117 1.32e-01 37_[+4(5.54e-05)]_75 chr2R:16731285-16731405 7.94e-01 120 chr3L:12804839-12804959 4.85e-02 35_[+2(6.70e-05)]_44_[+2(3.35e-05)]_\ 25 chr2L:11445523-11445643 3.58e-04 35_[+3(8.50e-05)]_77 chrX:13822212-13822332 1.51e-01 31_[+5(7.44e-05)]_81 chrX:3378576-3378696 1.54e-02 47_[+3(2.87e-05)]_17_[+3(2.87e-05)]_\ 40 chr3R:19153601-19153721 1.21e-01 120 chr2R:15922025-15922145 2.61e-02 80_[+1(7.18e-05)]_32 chr3L:4407125-4407245 4.18e-02 120 chr3L:3932872-3932992 4.32e-01 120 chr3R:28330892-28331012 8.02e-02 120 chr2R:11529676-11529796 1.75e-02 120 chr2L:16271594-16271714 1.52e-02 91_[+1(1.39e-05)]_4_[+1(1.39e-05)]_\ 9 chr3R:16764291-16764411 3.02e-01 120 chr2L:14491053-14491173 1.12e-01 120 chr3R:14057596-14057716 3.80e-02 22_[+2(1.68e-05)]_90 chr3R:4996721-4996841 2.55e-02 120 chr2R:9554138-9554258 3.31e-02 21_[+4(2.77e-05)]_7_[+4(8.44e-05)]_\ 76 chrX:6855734-6855854 1.12e-01 75_[+4(2.77e-05)]_37 chr3R:21580224-21580344 1.20e-01 31_[+4(8.44e-05)]_81 chr2L:8825649-8825769 3.34e-01 120 chr2L:171606-171726 6.29e-02 22_[+2(6.70e-05)]_90 chr3R:21618442-21618562 7.75e-05 3_[+3(1.41e-05)]_74_[+5(1.55e-05)]_\ 27 chr2L:19135048-19135168 3.91e-02 1_[+2(1.68e-05)]_111 chr3L:12693083-12693203 6.09e-02 17_[+4(5.54e-05)]_95 chr2L:14410471-14410591 1.31e-02 2_[+1(4.28e-05)]_46_[+1(1.39e-05)]_\ 27_[+1(1.39e-05)]_21 chr3R:17118992-17119112 8.42e-01 120 chrX:5899345-5899465 1.35e-02 64_[+1(2.83e-05)]_[+1(8.57e-05)]_40 chr3R:4852652-4852772 6.92e-01 120 chr2R:22387320-22387440 2.38e-02 120 chrX:11715544-11715664 7.80e-03 85_[+4(2.77e-05)]_27 chr3L:4363997-4364117 1.83e-03 27_[+5(4.53e-05)]_85 chr3R:31311115-31311235 2.66e-01 45_[+4(8.44e-05)]_67 chr2R:19275461-19275581 5.33e-03 16_[+2(1.68e-05)]_14_[+2(3.35e-05)]_\ 47_[+3(8.50e-05)]_19 chr3R:16703071-16703191 1.21e-01 120 chr3R:9932628-9932748 4.94e-01 120 chrX:3136669-3136789 1.25e-01 120 chr3L:4413913-4414033 6.49e-01 120 chr3R:19326111-19326231 5.37e-01 120 chr2R:11190928-11191048 5.14e-01 120 chr3R:17811533-17811653 8.22e-02 94_[+1(1.39e-05)]_18 chr2R:5726905-5727025 1.35e-02 120 chrX:18082892-18083012 2.61e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************