******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/acj6.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:13936354-13936474 1.0000 120 chr3L:5365262-5365382 1.0000 120 chr2L:17421545-17421665 1.0000 120 chr3R:8847378-8847498 1.0000 120 chr2L:18694834-18694954 1.0000 120 chrX:12507713-12507833 1.0000 120 chr3L:12915634-12915754 1.0000 120 chrX:2358338-2358458 1.0000 120 chr3R:14691526-14691646 1.0000 120 chr2L:18341051-18341171 1.0000 120 chrX:1466297-1466417 1.0000 120 chr2R:23567374-23567494 1.0000 120 chr2R:19968899-19969019 1.0000 120 chr2R:19153426-19153546 1.0000 120 chrX:13245920-13246040 1.0000 120 chrX:12760893-12761013 1.0000 120 chr3L:17577032-17577152 1.0000 120 chr2R:8322821-8322941 1.0000 120 chr2R:16812277-16812397 1.0000 120 chr2L:3153054-3153174 1.0000 120 chr3L:1829652-1829772 1.0000 120 chr2R:21470547-21470667 1.0000 120 chr2L:2944687-2944807 1.0000 120 chr2R:14082364-14082484 1.0000 120 chr2L:18628237-18628357 1.0000 120 chr3R:14389374-14389494 1.0000 120 chr3R:28629228-28629348 1.0000 120 chr3R:21733090-21733210 1.0000 120 chr2L:847370-847490 1.0000 120 chr3L:2795668-2795788 1.0000 120 chr3R:21931417-21931537 1.0000 120 chr2L:11399614-11399734 1.0000 120 chrX:19878820-19878940 1.0000 120 chr2L:9447927-9448047 1.0000 120 chrX:10877244-10877364 1.0000 120 chr2L:4071694-4071814 1.0000 120 chr3R:28848111-28848231 1.0000 120 chr3L:10968815-10968935 1.0000 120 chr3R:17202472-17202592 1.0000 120 chr2L:3781587-3781707 1.0000 120 chrX:17113531-17113651 1.0000 120 chrX:9466256-9466376 1.0000 120 chr2R:21569776-21569896 1.0000 120 chr2R:23306129-23306249 1.0000 120 chr3L:1374618-1374738 1.0000 120 chr3L:5183315-5183435 1.0000 120 chr3R:14498228-14498348 1.0000 120 chr3L:13994501-13994621 1.0000 120 chr3L:14353277-14353397 1.0000 120 chr2R:6969495-6969615 1.0000 120 chr3R:30284081-30284201 1.0000 120 chr3L:6085230-6085350 1.0000 120 chrX:17518429-17518549 1.0000 120 chr2L:6508888-6509008 1.0000 120 chr3L:817878-817998 1.0000 120 chr2R:14081680-14081800 1.0000 120 chr2L:15459063-15459183 1.0000 120 chr3L:16762313-16762433 1.0000 120 chrX:5020200-5020320 1.0000 120 chr2L:18372197-18372317 1.0000 120 chrX:5926825-5926945 1.0000 120 chrX:19145183-19145303 1.0000 120 chr3R:15425781-15425901 1.0000 120 chrX:4197619-4197739 1.0000 120 chr2R:18610436-18610556 1.0000 120 chr3R:14847323-14847443 1.0000 120 chr2L:171973-172093 1.0000 120 chrX:739998-740118 1.0000 120 chr3L:4624055-4624175 1.0000 120 chr3L:6269125-6269245 1.0000 120 chr3R:22628042-22628162 1.0000 120 chr3L:4722014-4722134 1.0000 120 chr3R:14373927-14374047 1.0000 120 chr2L:19142584-19142704 1.0000 120 chr2R:18926613-18926733 1.0000 120 chr2L:11968688-11968808 1.0000 120 chr2L:3341706-3341826 1.0000 120 chrX:17726709-17726829 1.0000 120 chr3L:3240433-3240553 1.0000 120 chr3R:13793460-13793580 1.0000 120 chr3L:18241066-18241186 1.0000 120 chr3R:26832020-26832140 1.0000 120 chr2R:18907134-18907254 1.0000 120 chr2L:15392493-15392613 1.0000 120 chr3R:20286184-20286304 1.0000 120 chr3R:20284647-20284767 1.0000 120 chr2R:7093001-7093121 1.0000 120 chr3L:15174230-15174350 1.0000 120 chrX:3722347-3722467 1.0000 120 chr3R:21649567-21649687 1.0000 120 chr2R:19420552-19420672 1.0000 120 chrX:3380276-3380396 1.0000 120 chr2L:2857879-2857999 1.0000 120 chr2R:20162704-20162824 1.0000 120 chr3R:20283386-20283506 1.0000 120 chr3L:4545819-4545939 1.0000 120 chr2L:13056156-13056276 1.0000 120 chr3L:7611388-7611508 1.0000 120 chr2L:19905307-19905427 1.0000 120 chr2L:19162901-19163021 1.0000 120 chr3L:18198875-18198995 1.0000 120 chr3R:14449457-14449577 1.0000 120 chr3L:20552014-20552134 1.0000 120 chr3R:25490434-25490554 1.0000 120 chr3R:18669823-18669943 1.0000 120 chr3L:14610583-14610703 1.0000 120 chr2L:14995176-14995296 1.0000 120 chrX:13568297-13568417 1.0000 120 chrX:9460728-9460848 1.0000 120 chr2R:22570678-22570798 1.0000 120 chr3L:19315028-19315148 1.0000 120 chr3R:28851977-28852097 1.0000 120 chr2L:5290006-5290126 1.0000 120 chr2R:18209811-18209931 1.0000 120 chr3R:30843217-30843337 1.0000 120 chr2R:20110935-20111055 1.0000 120 chr2L:16406704-16406824 1.0000 120 chr2L:6022936-6023056 1.0000 120 chr2R:14009521-14009641 1.0000 120 chr2R:12741711-12741831 1.0000 120 chr3R:22185820-22185940 1.0000 120 chrX:7892622-7892742 1.0000 120 chr2L:4211385-4211505 1.0000 120 chr3L:14463931-14464051 1.0000 120 chr3R:30805224-30805344 1.0000 120 chr3L:18079747-18079867 1.0000 120 chr2R:11755352-11755472 1.0000 120 chr2R:12732981-12733101 1.0000 120 chr3R:24996654-24996774 1.0000 120 chr3R:8469842-8469962 1.0000 120 chr2R:14782995-14783115 1.0000 120 chr3R:9230326-9230446 1.0000 120 chrX:5897211-5897331 1.0000 120 chr2R:11323971-11324091 1.0000 120 chr2L:16687969-16688089 1.0000 120 chrX:18272477-18272597 1.0000 120 chr2R:18894897-18895017 1.0000 120 chrX:10105824-10105944 1.0000 120 chrX:8215711-8215831 1.0000 120 chr3L:21253090-21253210 1.0000 120 chr2L:4348675-4348795 1.0000 120 chr3L:21685897-21686017 1.0000 120 chr2L:18146823-18146943 1.0000 120 chr2R:10237767-10237887 1.0000 120 chr3L:1084470-1084590 1.0000 120 chr2L:5483190-5483310 1.0000 120 chr2R:16836463-16836583 1.0000 120 chr2L:15304487-15304607 1.0000 120 chr2R:18304556-18304676 1.0000 120 chr2R:10559931-10560051 1.0000 120 chr2R:7241750-7241870 1.0000 120 chr3R:9913583-9913703 1.0000 120 chrX:16318958-16319078 1.0000 120 chr2L:18523141-18523261 1.0000 120 chrX:12662976-12663096 1.0000 120 chrX:13376649-13376769 1.0000 120 chr3R:15556730-15556850 1.0000 120 chr3R:10530687-10530807 1.0000 120 chr3L:16211214-16211334 1.0000 120 chr2L:4056864-4056984 1.0000 120 chrX:14897791-14897911 1.0000 120 chr3R:30076226-30076346 1.0000 120 chr3L:16752562-16752682 1.0000 120 chrX:7491061-7491181 1.0000 120 chr3L:14984641-14984761 1.0000 120 chr3R:17081617-17081737 1.0000 120 chr2R:8650615-8650735 1.0000 120 chr2L:18352925-18353045 1.0000 120 chr2L:20913048-20913168 1.0000 120 chr3L:16204319-16204439 1.0000 120 chr3L:13267389-13267509 1.0000 120 chr3R:31700338-31700458 1.0000 120 chr3L:6266522-6266642 1.0000 120 chrX:14074327-14074447 1.0000 120 chr2R:14126252-14126372 1.0000 120 chr3R:30151642-30151762 1.0000 120 chr2L:1458696-1458816 1.0000 120 chrX:5923291-5923411 1.0000 120 chr3L:21099093-21099213 1.0000 120 chr3R:23486900-23487020 1.0000 120 chr2L:14631140-14631260 1.0000 120 chr2L:18648343-18648463 1.0000 120 chrX:17237551-17237671 1.0000 120 chr2R:23299435-23299555 1.0000 120 chr3R:13841074-13841194 1.0000 120 chr2R:16156426-16156546 1.0000 120 chr3R:13861904-13862024 1.0000 120 chr2R:21569031-21569151 1.0000 120 chr2L:14598424-14598544 1.0000 120 chr3R:22324866-22324986 1.0000 120 chr2L:5080619-5080739 1.0000 120 chrX:9047127-9047247 1.0000 120 chr3L:6358634-6358754 1.0000 120 chr3L:2533855-2533975 1.0000 120 chr3L:736098-736218 1.0000 120 chrX:18834526-18834646 1.0000 120 chr2R:11094338-11094458 1.0000 120 chrX:7544042-7544162 1.0000 120 chrX:6059292-6059412 1.0000 120 chr3R:31336391-31336511 1.0000 120 chr2L:13613811-13613931 1.0000 120 chr3L:3343463-3343583 1.0000 120 chr3R:29875880-29876000 1.0000 120 chr2L:675030-675150 1.0000 120 chr2R:14513598-14513718 1.0000 120 chr2L:8361688-8361808 1.0000 120 chr3R:30842335-30842455 1.0000 120 chr3R:30134804-30134924 1.0000 120 chr3L:2835134-2835254 1.0000 120 chr3R:30501288-30501408 1.0000 120 chr3R:14430418-14430538 1.0000 120 chr3L:20989000-20989120 1.0000 120 chr2L:18645614-18645734 1.0000 120 chr2L:12602308-12602428 1.0000 120 chrX:17571062-17571182 1.0000 120 chrX:2365533-2365653 1.0000 120 chr3L:777421-777541 1.0000 120 chr2R:12012858-12012978 1.0000 120 chr3R:23147749-23147869 1.0000 120 chr2R:17836098-17836218 1.0000 120 chr3R:23508429-23508549 1.0000 120 chr2R:19969849-19969969 1.0000 120 chr2L:10615922-10616042 1.0000 120 chrX:19160051-19160171 1.0000 120 chr3R:28633914-28634034 1.0000 120 chr3R:29199888-29200008 1.0000 120 chr2L:19364759-19364879 1.0000 120 chr3L:8027801-8027921 1.0000 120 chr2L:9829041-9829161 1.0000 120 chr3R:31330000-31330120 1.0000 120 chr2L:7420433-7420553 1.0000 120 chr2R:9277611-9277731 1.0000 120 chrX:6077102-6077222 1.0000 120 chr3R:21682213-21682333 1.0000 120 chr3L:8459408-8459528 1.0000 120 chr3R:17702507-17702627 1.0000 120 chr3R:9963223-9963343 1.0000 120 chr2R:12742642-12742762 1.0000 120 chrX:5786623-5786743 1.0000 120 chr2L:15743711-15743831 1.0000 120 chr2L:11066122-11066242 1.0000 120 chr3L:8419130-8419250 1.0000 120 chrX:2518454-2518574 1.0000 120 chr3L:1388221-1388341 1.0000 120 chrX:444099-444219 1.0000 120 chrX:1083251-1083371 1.0000 120 chr3R:4667462-4667582 1.0000 120 chr3L:1392110-1392230 1.0000 120 chr3L:16176600-16176720 1.0000 120 chr3L:12442707-12442827 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_acj6/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/acj6.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.35 C 0.15 G 0.149 T 0.352 Background letter frequencies (from file dataset with add-one prior applied): A 0.35 C 0.15 G 0.149 T 0.352 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CASTGCAC MEME-1 width = 8 sites = 22 llr = 208 E-value = 4.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CASTGCAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :8::::a: pos.-specific C a:4::7:7 probability G :16:a::1 matrix T :1:a:3:2 bits 2.7 * * 2.5 * * 2.2 * * 1.9 * * * Relative 1.6 * * * * Entropy 1.4 * ****** (13.6 bits) 1.1 * ****** 0.8 * ****** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGTGCAC consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGCAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1083251-1083371 2 3.23e-06 A CAGTGCAC TGCGAGAAAG chr2R:20110935-20111055 16 3.23e-06 CGATTTAATA CAGTGCAC TTACAAATGA chr2L:6508888-6509008 76 3.23e-06 TAATTTCTTG CAGTGCAC TGTGTTTGTA chr3R:21733090-21733210 112 3.23e-06 ATTTTCCTCC CAGTGCAC A chr3R:20283386-20283506 96 7.86e-06 TTCCAAATAT CGGTGCAC TCCAATACTT chrX:6059292-6059412 110 1.68e-05 GAAATTTGCT CAGTGTAC CCA chr3R:31700338-31700458 6 1.68e-05 ACTGT CGCTGCAC ATGGAGAAAG chr3L:736098-736218 108 1.82e-05 TATTTTTCTG CCGTGCAC TGGTA chr2L:4348675-4348795 94 2.47e-05 AAACTAAAAT CAGTGCAG CTAGTTTATA chr2R:19153426-19153546 96 2.47e-05 GATTTTCTCG CAGTGCAG GCACGGCAGG chr2L:9829041-9829161 94 3.23e-05 CCTTTTCTCC CAGTGCAT GCAGCATTTC chr3L:16752562-16752682 111 3.23e-05 ATATTTCTTC CAGTGCAT GG chrX:17113531-17113651 106 3.23e-05 TTTTTTCTTC CAGTGCAT GCATACA chr3L:10968815-10968935 98 3.23e-05 TTTTTTTTTC CAGTGCAT CGAATGAGTG chr3R:29199888-29200008 56 3.99e-05 ATCGAAGCTC CACTGTAC ATTGCACTTA chr3L:3343463-3343583 110 3.99e-05 CGTTTTTTTG CACTGTAC GTC chrX:14074327-14074447 110 3.99e-05 ATCGAGTGAT CACTGTAC TTC chr2R:12741711-12741831 113 3.99e-05 GCAGAAGCTC CACTGTAC chr2L:16406704-16406824 97 3.99e-05 ATCGTCAACA CACTGTAC CTTTCATGCC chr2L:19364759-19364879 38 5.10e-05 CTTGAATATG CTCTGCAC TAAGGTCAAC chr2R:20162704-20162824 104 5.10e-05 TTTTTTTTCT CAGTGGAC TGGCGCATA chr3L:4624055-4624175 69 5.10e-05 ACTGGAATTT CTCTGCAC TTCCTGAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGCAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1083251-1083371 3.2e-06 1_[+1]_111 chr2R:20110935-20111055 3.2e-06 15_[+1]_97 chr2L:6508888-6509008 3.2e-06 75_[+1]_37 chr3R:21733090-21733210 3.2e-06 111_[+1]_1 chr3R:20283386-20283506 7.9e-06 95_[+1]_17 chrX:6059292-6059412 1.7e-05 109_[+1]_3 chr3R:31700338-31700458 1.7e-05 5_[+1]_107 chr3L:736098-736218 1.8e-05 107_[+1]_5 chr2L:4348675-4348795 2.5e-05 93_[+1]_19 chr2R:19153426-19153546 2.5e-05 95_[+1]_17 chr2L:9829041-9829161 3.2e-05 93_[+1]_19 chr3L:16752562-16752682 3.2e-05 110_[+1]_2 chrX:17113531-17113651 3.2e-05 105_[+1]_7 chr3L:10968815-10968935 3.2e-05 97_[+1]_15 chr3R:29199888-29200008 4e-05 55_[+1]_57 chr3L:3343463-3343583 4e-05 109_[+1]_3 chrX:14074327-14074447 4e-05 109_[+1]_3 chr2R:12741711-12741831 4e-05 112_[+1] chr2L:16406704-16406824 4e-05 96_[+1]_16 chr2L:19364759-19364879 5.1e-05 37_[+1]_75 chr2R:20162704-20162824 5.1e-05 103_[+1]_9 chr3L:4624055-4624175 5.1e-05 68_[+1]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGCAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CASTGCAC width=8 seqs=22 chrX:1083251-1083371 ( 2) CAGTGCAC 1 chr2R:20110935-20111055 ( 16) CAGTGCAC 1 chr2L:6508888-6509008 ( 76) CAGTGCAC 1 chr3R:21733090-21733210 ( 112) CAGTGCAC 1 chr3R:20283386-20283506 ( 96) CGGTGCAC 1 chrX:6059292-6059412 ( 110) CAGTGTAC 1 chr3R:31700338-31700458 ( 6) CGCTGCAC 1 chr3L:736098-736218 ( 108) CCGTGCAC 1 chr2L:4348675-4348795 ( 94) CAGTGCAG 1 chr2R:19153426-19153546 ( 96) CAGTGCAG 1 chr2L:9829041-9829161 ( 94) CAGTGCAT 1 chr3L:16752562-16752682 ( 111) CAGTGCAT 1 chrX:17113531-17113651 ( 106) CAGTGCAT 1 chr3L:10968815-10968935 ( 98) CAGTGCAT 1 chr3R:29199888-29200008 ( 56) CACTGTAC 1 chr3L:3343463-3343583 ( 110) CACTGTAC 1 chrX:14074327-14074447 ( 110) CACTGTAC 1 chr2R:12741711-12741831 ( 113) CACTGTAC 1 chr2L:16406704-16406824 ( 97) CACTGTAC 1 chr2L:19364759-19364879 ( 38) CTCTGCAC 1 chr2R:20162704-20162824 ( 104) CAGTGGAC 1 chr3L:4624055-4624175 ( 69) CTCTGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGCAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6807 E= 4.3e+001 -1110 274 -1110 -1110 114 -172 -71 -195 -1110 128 210 -1110 -1110 -1110 -1110 151 -1110 -1110 275 -1110 -1110 219 -171 -37 152 -1110 -1110 -1110 -1110 228 -71 -95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGCAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 4.3e+001 0.000000 1.000000 0.000000 0.000000 0.772727 0.045455 0.090909 0.090909 0.000000 0.363636 0.636364 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.681818 0.045455 0.272727 1.000000 0.000000 0.000000 0.000000 0.000000 0.727273 0.090909 0.181818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGCAC MEME-1 regular expression -------------------------------------------------------------------------------- CA[GC]TG[CT]AC -------------------------------------------------------------------------------- Time 7.83 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCSCGGC MEME-2 width = 8 sites = 2 llr = 29 E-value = 7.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCSCGGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :aa5a::a probability G a::5:aa: matrix T :::::::: bits 2.7 *** **** 2.5 *** **** 2.2 *** **** 1.9 *** **** Relative 1.6 ******** Entropy 1.4 ******** (20.9 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCCCGGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCSCGGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:1084470-1084590 2 5.01e-07 T GCCCCGGC TCAGCGGTAC chr3R:28851977-28852097 88 5.01e-07 TCTTGCTAAT GCCGCGGC TTACGTTGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCSCGGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1084470-1084590 5e-07 1_[+2]_111 chr3R:28851977-28852097 5e-07 87_[+2]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCSCGGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCSCGGC width=8 seqs=2 chr3L:1084470-1084590 ( 2) GCCCCGGC 1 chr3R:28851977-28852097 ( 88) GCCGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCSCGGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 7.6e+003 -765 -765 274 -765 -765 273 -765 -765 -765 273 -765 -765 -765 173 174 -765 -765 273 -765 -765 -765 -765 274 -765 -765 -765 274 -765 -765 273 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCSCGGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 7.6e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCSCGGC MEME-2 regular expression -------------------------------------------------------------------------------- GCC[CG]CGGC -------------------------------------------------------------------------------- Time 14.28 secs. ******************************************************************************** ******************************************************************************** MOTIF DGSTGCTG MEME-3 width = 8 sites = 9 llr = 98 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif DGSTGCTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2:::::1: pos.-specific C ::6::a:: probability G 4a4:a::a matrix T 3::a::9: bits 2.7 * ** * 2.5 * ** * 2.2 * ** * 1.9 * ** * Relative 1.6 ** ** * Entropy 1.4 ***** * (15.8 bits) 1.1 ******* 0.8 ******* 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCTGCTG consensus T G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGSTGCTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1083251-1083371 72 1.37e-06 ACGGAGAGAC GGCTGCTG AATATCGATT chr2R:18894897-18895017 112 1.37e-06 TCCTCGCGTC GGCTGCTG A chr3R:14847323-14847443 36 2.74e-06 AACTCTTTTT GGGTGCTG CGAGCTCAAC chr2R:7241750-7241870 106 5.99e-06 ACAAATTTCT TGCTGCTG GAACTAT chrX:17726709-17726829 103 5.99e-06 GTGTACTAAC TGCTGCTG TTAATTATAT chrX:5897211-5897331 111 9.21e-06 AAAATTTGAG TGGTGCTG TT chr2R:16156426-16156546 14 1.24e-05 TAAGAGTATG AGCTGCTG AGCACATAAA chr2L:18628237-18628357 42 1.56e-05 TAAAAGTGTT AGGTGCTG AAACAAAATG chr2R:12732981-12733101 106 1.84e-05 TATATTAAAT GGGTGCAG ACCTAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGSTGCTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1083251-1083371 1.4e-06 71_[+3]_41 chr2R:18894897-18895017 1.4e-06 111_[+3]_1 chr3R:14847323-14847443 2.7e-06 35_[+3]_77 chr2R:7241750-7241870 6e-06 105_[+3]_7 chrX:17726709-17726829 6e-06 102_[+3]_10 chrX:5897211-5897331 9.2e-06 110_[+3]_2 chr2R:16156426-16156546 1.2e-05 13_[+3]_99 chr2L:18628237-18628357 1.6e-05 41_[+3]_71 chr2R:12732981-12733101 1.8e-05 105_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGSTGCTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DGSTGCTG width=8 seqs=9 chrX:1083251-1083371 ( 72) GGCTGCTG 1 chr2R:18894897-18895017 ( 112) GGCTGCTG 1 chr3R:14847323-14847443 ( 36) GGGTGCTG 1 chr2R:7241750-7241870 ( 106) TGCTGCTG 1 chrX:17726709-17726829 ( 103) TGCTGCTG 1 chrX:5897211-5897331 ( 111) TGGTGCTG 1 chr2R:16156426-16156546 ( 14) AGCTGCTG 1 chr2L:18628237-18628357 ( 42) AGGTGCTG 1 chr2R:12732981-12733101 ( 106) GGGTGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGSTGCTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 1.5e+004 -65 -982 158 -8 -982 -982 275 -982 -982 189 158 -982 -982 -982 -982 151 -982 -982 275 -982 -982 274 -982 -982 -165 -982 -982 134 -982 -982 275 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGSTGCTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.5e+004 0.222222 0.000000 0.444444 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.555556 0.444444 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.000000 0.000000 0.888889 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGSTGCTG MEME-3 regular expression -------------------------------------------------------------------------------- [GTA]G[CG]TGCTG -------------------------------------------------------------------------------- Time 20.74 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGSCGGC MEME-4 width = 8 sites = 2 llr = 27 E-value = 2.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGSCGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C a::5a::a probability G ::a5:aa: matrix T :::::::: bits 2.7 * * **** 2.5 * * **** 2.2 * * **** 1.9 * * **** Relative 1.6 ******** Entropy 1.4 ******** (19.7 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGCCGGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:8361688-8361808 34 1.17e-06 TTGATTTCAT CAGGCGGC GAAAAGACTA chr2R:23567374-23567494 4 1.17e-06 TGC CAGCCGGC AAGCAAGTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8361688-8361808 1.2e-06 33_[+4]_79 chr2R:23567374-23567494 1.2e-06 3_[+4]_109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGSCGGC width=8 seqs=2 chr2L:8361688-8361808 ( 34) CAGGCGGC 1 chr2R:23567374-23567494 ( 4) CAGCCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.4e+004 -765 273 -765 -765 151 -765 -765 -765 -765 -765 274 -765 -765 173 174 -765 -765 273 -765 -765 -765 -765 274 -765 -765 -765 274 -765 -765 273 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.4e+004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCGGC MEME-4 regular expression -------------------------------------------------------------------------------- CAG[CG]CGGC -------------------------------------------------------------------------------- Time 27.15 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCCCMCC MEME-5 width = 8 sites = 5 llr = 58 E-value = 1.2e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCCCMCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::6:: pos.-specific C ::88a4a8 probability G :a22:::2 matrix T a::::::: bits 2.7 * * * 2.5 * * * 2.2 * * * 1.9 **** ** Relative 1.6 **** ** Entropy 1.4 ***** ** (16.8 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGCCCACC consensus GG C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCCMCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12741711-12741831 93 5.97e-07 AGCACTCGAG TGCCCCCC TGGCAGAAGC chr2L:19162901-19163021 112 1.99e-06 CACAATATTA TGCCCACC A chr3R:22185820-22185940 81 3.77e-06 GCTGTTTTGT TGCGCCCC AGTTGTTCCC chr3L:2533855-2533975 59 7.93e-06 TCCCTTGATC TGCCCACG ACAAGTACGC chr3R:13841074-13841194 106 7.93e-06 GTTAATAATA TGGCCACC TGTGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCCMCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12741711-12741831 6e-07 92_[+5]_20 chr2L:19162901-19163021 2e-06 111_[+5]_1 chr3R:22185820-22185940 3.8e-06 80_[+5]_32 chr3L:2533855-2533975 7.9e-06 58_[+5]_54 chr3R:13841074-13841194 7.9e-06 105_[+5]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCCMCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCCCMCC width=8 seqs=5 chr2R:12741711-12741831 ( 93) TGCCCCCC 1 chr2L:19162901-19163021 ( 112) TGCCCACC 1 chr3R:22185820-22185940 ( 81) TGCGCCCC 1 chr3L:2533855-2533975 ( 59) TGCCCACG 1 chr3R:13841074-13841194 ( 106) TGGCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCCMCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.4073 E= 1.2e+005 -897 -897 -897 151 -897 -897 275 -897 -897 242 43 -897 -897 242 43 -897 -897 274 -897 -897 78 142 -897 -897 -897 274 -897 -897 -897 242 43 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCCMCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.2e+005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCCMCC MEME-5 regular expression -------------------------------------------------------------------------------- TG[CG][CG]C[AC]C[CG] -------------------------------------------------------------------------------- Time 33.60 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13936354-13936474 5.09e-01 120 chr3L:5365262-5365382 7.73e-01 120 chr2L:17421545-17421665 9.95e-01 120 chr3R:8847378-8847498 2.56e-01 120 chr2L:18694834-18694954 4.26e-01 120 chrX:12507713-12507833 7.21e-01 120 chr3L:12915634-12915754 1.41e-01 120 chrX:2358338-2358458 3.88e-02 120 chr3R:14691526-14691646 8.03e-01 120 chr2L:18341051-18341171 3.42e-01 120 chrX:1466297-1466417 7.43e-01 120 chr2R:23567374-23567494 5.74e-05 3_[+4(1.17e-06)]_109 chr2R:19968899-19969019 5.92e-01 120 chr2R:19153426-19153546 1.41e-04 95_[+1(2.47e-05)]_17 chrX:13245920-13246040 1.56e-01 120 chrX:12760893-12761013 9.16e-01 120 chr3L:17577032-17577152 6.21e-01 120 chr2R:8322821-8322941 2.76e-01 120 chr2R:16812277-16812397 7.21e-01 120 chr2L:3153054-3153174 1.03e-01 120 chr3L:1829652-1829772 2.00e-01 120 chr2R:21470547-21470667 3.81e-01 120 chr2L:2944687-2944807 1.32e-01 120 chr2R:14082364-14082484 9.58e-01 120 chr2L:18628237-18628357 2.12e-01 41_[+3(1.56e-05)]_71 chr3R:14389374-14389494 6.10e-01 120 chr3R:28629228-28629348 4.18e-02 120 chr3R:21733090-21733210 8.92e-03 111_[+1(3.23e-06)]_1 chr2L:847370-847490 4.89e-01 120 chr3L:2795668-2795788 1.41e-01 110_[+5(9.26e-05)]_2 chr3R:21931417-21931537 6.92e-01 120 chr2L:11399614-11399734 3.19e-01 120 chrX:19878820-19878940 7.48e-01 120 chr2L:9447927-9448047 9.85e-01 120 chrX:10877244-10877364 1.56e-01 120 chr2L:4071694-4071814 6.09e-01 120 chr3R:28848111-28848231 9.42e-01 120 chr3L:10968815-10968935 9.48e-02 97_[+1(3.23e-05)]_15 chr3R:17202472-17202592 9.98e-01 120 chr2L:3781587-3781707 1.00e+00 120 chrX:17113531-17113651 1.94e-02 105_[+1(3.23e-05)]_7 chrX:9466256-9466376 9.34e-03 120 chr2R:21569776-21569896 9.73e-01 120 chr2R:23306129-23306249 1.13e-01 120 chr3L:1374618-1374738 2.52e-02 120 chr3L:5183315-5183435 8.31e-01 120 chr3R:14498228-14498348 6.83e-03 120 chr3L:13994501-13994621 9.90e-01 120 chr3L:14353277-14353397 8.64e-01 120 chr2R:6969495-6969615 9.99e-01 120 chr3R:30284081-30284201 1.13e-03 82_[+3(7.91e-05)]_30 chr3L:6085230-6085350 9.23e-01 120 chrX:17518429-17518549 2.99e-01 120 chr2L:6508888-6509008 2.15e-03 75_[+1(3.23e-06)]_37 chr3L:817878-817998 8.93e-01 120 chr2R:14081680-14081800 3.47e-01 120 chr2L:15459063-15459183 9.93e-01 120 chr3L:16762313-16762433 9.96e-01 120 chrX:5020200-5020320 5.16e-01 120 chr2L:18372197-18372317 1.94e-01 120 chrX:5926825-5926945 3.13e-01 120 chrX:19145183-19145303 9.63e-01 120 chr3R:15425781-15425901 7.92e-01 120 chrX:4197619-4197739 9.99e-01 120 chr2R:18610436-18610556 8.78e-01 120 chr3R:14847323-14847443 1.59e-03 35_[+3(2.74e-06)]_77 chr2L:171973-172093 9.94e-01 120 chrX:739998-740118 1.50e-03 120 chr3L:4624055-4624175 9.25e-02 68_[+1(5.10e-05)]_44 chr3L:6269125-6269245 6.92e-01 120 chr3R:22628042-22628162 6.05e-01 120 chr3L:4722014-4722134 4.24e-01 120 chr3R:14373927-14374047 8.95e-01 120 chr2L:19142584-19142704 9.22e-01 120 chr2R:18926613-18926733 1.91e-01 120 chr2L:11968688-11968808 9.57e-01 120 chr2L:3341706-3341826 3.36e-01 120 chrX:17726709-17726829 2.24e-02 102_[+3(5.99e-06)]_10 chr3L:3240433-3240553 8.99e-01 120 chr3R:13793460-13793580 9.79e-01 120 chr3L:18241066-18241186 9.98e-01 120 chr3R:26832020-26832140 2.23e-01 120 chr2R:18907134-18907254 9.99e-01 120 chr2L:15392493-15392613 2.71e-01 120 chr3R:20286184-20286304 1.28e-01 120 chr3R:20284647-20284767 4.75e-01 120 chr2R:7093001-7093121 1.39e-01 120 chr3L:15174230-15174350 8.65e-01 120 chrX:3722347-3722467 8.71e-01 120 chr3R:21649567-21649687 2.75e-01 120 chr2R:19420552-19420672 2.57e-01 120 chrX:3380276-3380396 3.10e-02 120 chr2L:2857879-2857999 5.38e-01 120 chr2R:20162704-20162824 5.18e-02 103_[+1(5.10e-05)]_9 chr3R:20283386-20283506 9.89e-03 95_[+1(7.86e-06)]_17 chr3L:4545819-4545939 9.72e-04 10_[+5(1.44e-05)]_102 chr2L:13056156-13056276 7.74e-01 120 chr3L:7611388-7611508 9.93e-01 120 chr2L:19905307-19905427 8.86e-01 120 chr2L:19162901-19163021 3.98e-03 111_[+5(1.99e-06)]_1 chr3L:18198875-18198995 1.00e+00 120 chr3R:14449457-14449577 8.79e-01 120 chr3L:20552014-20552134 2.52e-03 120 chr3R:25490434-25490554 3.73e-03 120 chr3R:18669823-18669943 4.26e-01 120 chr3L:14610583-14610703 9.71e-01 120 chr2L:14995176-14995296 1.00e+00 120 chrX:13568297-13568417 3.30e-01 120 chrX:9460728-9460848 1.60e-02 120 chr2R:22570678-22570798 9.99e-01 120 chr3L:19315028-19315148 9.95e-01 120 chr3R:28851977-28852097 3.40e-04 87_[+2(5.01e-07)]_25 chr2L:5290006-5290126 1.00e+00 120 chr2R:18209811-18209931 8.96e-01 120 chr3R:30843217-30843337 9.68e-01 120 chr2R:20110935-20111055 2.66e-03 15_[+1(3.23e-06)]_97 chr2L:16406704-16406824 5.43e-02 96_[+1(3.99e-05)]_16 chr2L:6022936-6023056 5.82e-01 120 chr2R:14009521-14009641 9.68e-01 120 chr2R:12741711-12741831 9.78e-06 92_[+5(5.97e-07)]_12_[+1(3.99e-05)] chr3R:22185820-22185940 6.39e-03 80_[+5(3.77e-06)]_32 chrX:7892622-7892742 8.49e-01 120 chr2L:4211385-4211505 9.53e-01 120 chr3L:14463931-14464051 9.69e-01 120 chr3R:30805224-30805344 6.61e-02 3_[+3(7.91e-05)]_109 chr3L:18079747-18079867 9.99e-01 120 chr2R:11755352-11755472 4.31e-02 86_[+2(6.85e-05)]_26 chr2R:12732981-12733101 3.52e-03 105_[+3(1.84e-05)]_7 chr3R:24996654-24996774 2.59e-02 13_[+5(9.26e-05)]_99 chr3R:8469842-8469962 9.90e-01 120 chr2R:14782995-14783115 7.41e-01 120 chr3R:9230326-9230446 6.48e-01 120 chrX:5897211-5897331 7.23e-02 110_[+3(9.21e-06)]_2 chr2R:11323971-11324091 6.49e-01 120 chr2L:16687969-16688089 1.97e-01 120 chrX:18272477-18272597 9.95e-01 120 chr2R:18894897-18895017 2.63e-04 111_[+3(1.37e-06)]_1 chrX:10105824-10105944 7.19e-01 120 chrX:8215711-8215831 3.16e-01 120 chr3L:21253090-21253210 8.07e-01 120 chr2L:4348675-4348795 1.67e-02 93_[+1(2.47e-05)]_19 chr3L:21685897-21686017 9.97e-01 120 chr2L:18146823-18146943 4.36e-01 120 chr2R:10237767-10237887 9.98e-01 120 chr3L:1084470-1084590 6.04e-05 1_[+2(5.01e-07)]_111 chr2L:5483190-5483310 4.55e-01 120 chr2R:16836463-16836583 6.65e-01 120 chr2L:15304487-15304607 1.00e+00 120 chr2R:18304556-18304676 7.50e-01 120 chr2R:10559931-10560051 8.27e-02 120 chr2R:7241750-7241870 2.91e-02 105_[+3(5.99e-06)]_7 chr3R:9913583-9913703 2.16e-01 120 chrX:16318958-16319078 1.26e-01 120 chr2L:18523141-18523261 8.27e-01 120 chrX:12662976-12663096 5.11e-01 120 chrX:13376649-13376769 7.68e-01 120 chr3R:15556730-15556850 2.15e-01 120 chr3R:10530687-10530807 6.71e-01 120 chr3L:16211214-16211334 1.34e-01 120 chr2L:4056864-4056984 5.83e-01 120 chrX:14897791-14897911 6.21e-01 120 chr3R:30076226-30076346 6.29e-02 120 chr3L:16752562-16752682 1.49e-01 110_[+1(3.23e-05)]_2 chrX:7491061-7491181 6.10e-01 120 chr3L:14984641-14984761 9.47e-01 120 chr3R:17081617-17081737 9.99e-01 120 chr2R:8650615-8650735 9.67e-01 120 chr2L:18352925-18353045 9.85e-01 120 chr2L:20913048-20913168 8.36e-01 120 chr3L:16204319-16204439 6.80e-01 120 chr3L:13267389-13267509 7.09e-01 120 chr3R:31700338-31700458 4.07e-03 5_[+1(1.68e-05)]_107 chr3L:6266522-6266642 2.26e-01 120 chrX:14074327-14074447 5.36e-02 109_[+1(3.99e-05)]_3 chr2R:14126252-14126372 9.80e-01 120 chr3R:30151642-30151762 5.32e-01 120 chr2L:1458696-1458816 1.86e-01 120 chrX:5923291-5923411 2.15e-01 120 chr3L:21099093-21099213 9.62e-01 120 chr3R:23486900-23487020 4.33e-01 120 chr2L:14631140-14631260 8.47e-01 120 chr2L:18648343-18648463 1.27e-01 120 chrX:17237551-17237671 8.49e-01 120 chr2R:23299435-23299555 5.49e-01 120 chr3R:13841074-13841194 5.59e-02 105_[+5(7.93e-06)]_7 chr2R:16156426-16156546 6.65e-03 13_[+3(1.24e-05)]_99 chr3R:13861904-13862024 3.54e-01 120 chr2R:21569031-21569151 8.55e-01 120 chr2L:14598424-14598544 2.18e-03 18_[+4(4.60e-05)]_94 chr3R:22324866-22324986 2.91e-01 120 chr2L:5080619-5080739 5.21e-01 120 chrX:9047127-9047247 5.22e-01 120 chr3L:6358634-6358754 8.31e-01 120 chr3L:2533855-2533975 5.57e-04 58_[+5(7.93e-06)]_43_[+1(9.41e-05)]_\ 3 chr3L:736098-736218 5.09e-03 107_[+1(1.82e-05)]_5 chrX:18834526-18834646 4.31e-01 120 chr2R:11094338-11094458 2.61e-01 120 chrX:7544042-7544162 7.94e-01 120 chrX:6059292-6059412 3.29e-02 109_[+1(1.68e-05)]_3 chr3R:31336391-31336511 4.76e-01 120 chr2L:13613811-13613931 9.19e-01 120 chr3L:3343463-3343583 1.02e-01 109_[+1(3.99e-05)]_3 chr3R:29875880-29876000 6.47e-01 120 chr2L:675030-675150 1.00e+00 120 chr2R:14513598-14513718 9.95e-01 120 chr2L:8361688-8361808 1.87e-03 33_[+4(1.17e-06)]_79 chr3R:30842335-30842455 9.92e-01 120 chr3R:30134804-30134924 9.60e-01 120 chr3L:2835134-2835254 5.13e-01 120 chr3R:30501288-30501408 1.70e-01 120 chr3R:14430418-14430538 5.42e-01 120 chr3L:20989000-20989120 6.76e-01 120 chr2L:18645614-18645734 6.63e-01 120 chr2L:12602308-12602428 2.38e-01 120 chrX:17571062-17571182 1.39e-01 120 chrX:2365533-2365653 2.97e-01 120 chr3L:777421-777541 8.18e-01 120 chr2R:12012858-12012978 1.00e+00 120 chr3R:23147749-23147869 1.33e-01 120 chr2R:17836098-17836218 9.94e-01 120 chr3R:23508429-23508549 9.95e-01 120 chr2R:19969849-19969969 1.48e-01 120 chr2L:10615922-10616042 3.04e-02 120 chrX:19160051-19160171 2.11e-01 120 chr3R:28633914-28634034 9.62e-01 120 chr3R:29199888-29200008 1.91e-02 55_[+1(3.99e-05)]_57 chr2L:19364759-19364879 1.71e-01 37_[+1(5.10e-05)]_75 chr3L:8027801-8027921 2.75e-01 120 chr2L:9829041-9829161 8.91e-03 93_[+1(3.23e-05)]_19 chr3R:31330000-31330120 3.04e-01 120 chr2L:7420433-7420553 6.81e-01 120 chr2R:9277611-9277731 8.06e-01 120 chrX:6077102-6077222 9.99e-01 120 chr3R:21682213-21682333 9.97e-01 120 chr3L:8459408-8459528 9.81e-01 120 chr3R:17702507-17702627 4.95e-01 120 chr3R:9963223-9963343 1.04e-01 120 chr2R:12742642-12742762 3.23e-01 120 chrX:5786623-5786743 4.45e-01 120 chr2L:15743711-15743831 3.34e-01 120 chr2L:11066122-11066242 9.40e-01 120 chr3L:8419130-8419250 8.84e-01 120 chrX:2518454-2518574 9.59e-01 120 chr3L:1388221-1388341 1.09e-02 120 chrX:444099-444219 1.47e-01 28_[+3(7.91e-05)]_84 chrX:1083251-1083371 1.29e-06 1_[+1(3.23e-06)]_62_[+3(1.37e-06)]_\ 41 chr3R:4667462-4667582 9.54e-01 120 chr3L:1392110-1392230 1.00e+00 120 chr3L:16176600-16176720 2.34e-01 79_[+5(5.96e-05)]_33 chr3L:12442707-12442827 9.02e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n12.farnam.hpc.yale.internal ********************************************************************************