******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/achi.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:11129062-11129182 1.0000 120 chr2L:2045433-2045553 1.0000 120 chr2R:12514644-12514764 1.0000 120 chr2L:12974963-12975083 1.0000 120 chrX:17856575-17856695 1.0000 120 chr2L:8123924-8124044 1.0000 120 chr2R:23553908-23554028 1.0000 120 chrX:6674303-6674423 1.0000 120 chr3L:17843470-17843590 1.0000 120 chr3R:19027294-19027414 1.0000 120 chr3R:14901551-14901671 1.0000 120 chr2R:12145646-12145766 1.0000 120 chrX:3880646-3880766 1.0000 120 chr3R:24931944-24932064 1.0000 120 chr2R:20319060-20319180 1.0000 120 chrX:8251654-8251774 1.0000 120 chr2L:5100156-5100276 1.0000 120 chr2L:6656299-6656419 1.0000 120 chrX:11891909-11892029 1.0000 120 chr2L:8709630-8709750 1.0000 120 chr2R:16336043-16336163 1.0000 120 chr2R:9712775-9712895 1.0000 120 chr2R:14962144-14962264 1.0000 120 chr3L:14992100-14992220 1.0000 120 chr2R:18141253-18141373 1.0000 120 chrX:18479736-18479856 1.0000 120 chr2L:10341573-10341693 1.0000 120 chr2R:14848320-14848440 1.0000 120 chrX:2275057-2275177 1.0000 120 chr2L:18943940-18944060 1.0000 120 chr2L:12707743-12707863 1.0000 120 chr2R:24664322-24664442 1.0000 120 chr3L:15161691-15161811 1.0000 120 chr2R:12514896-12515016 1.0000 120 chr3R:23358555-23358675 1.0000 120 chr2L:2009782-2009902 1.0000 120 chr3L:1665040-1665160 1.0000 120 chr3R:8340971-8341091 1.0000 120 chrX:10385812-10385932 1.0000 120 chr2R:16640886-16641006 1.0000 120 chr2R:14756229-14756349 1.0000 120 chr2R:16500015-16500135 1.0000 120 chr3L:6082791-6082911 1.0000 120 chrX:1380769-1380889 1.0000 120 chr2L:11120261-11120381 1.0000 120 chr3L:3143421-3143541 1.0000 120 chr3R:16441629-16441749 1.0000 120 chr2R:12510748-12510868 1.0000 120 chr2L:5096361-5096481 1.0000 120 chrX:18479939-18480059 1.0000 120 chr3R:10638800-10638920 1.0000 120 chrX:793025-793145 1.0000 120 chr3L:14038391-14038511 1.0000 120 chr2R:18426278-18426398 1.0000 120 chr2R:21634304-21634424 1.0000 120 chr3R:17043486-17043606 1.0000 120 chrX:18858076-18858196 1.0000 120 chr3L:17849696-17849816 1.0000 120 chrX:12028990-12029110 1.0000 120 chr3R:29279714-29279834 1.0000 120 chr3R:23061401-23061521 1.0000 120 chr2L:12545740-12545860 1.0000 120 chr3L:9729915-9730035 1.0000 120 chr2L:17501102-17501222 1.0000 120 chr2R:21323942-21324062 1.0000 120 chr2R:9207336-9207456 1.0000 120 chr3R:19875643-19875763 1.0000 120 chr2R:10821585-10821705 1.0000 120 chr3L:8158904-8159024 1.0000 120 chr2L:2376283-2376403 1.0000 120 chr3R:10331331-10331451 1.0000 120 chrX:19746014-19746134 1.0000 120 chr3L:1329798-1329918 1.0000 120 chr2R:22882627-22882747 1.0000 120 chr2R:7971950-7972070 1.0000 120 chr2L:18951782-18951902 1.0000 120 chr2R:23862559-23862679 1.0000 120 chr3R:16798505-16798625 1.0000 120 chrX:4117442-4117562 1.0000 120 chrX:16873193-16873313 1.0000 120 chrX:20511445-20511565 1.0000 120 chr2L:2130195-2130315 1.0000 120 chr3L:6085372-6085492 1.0000 120 chr2R:5757591-5757711 1.0000 120 chr2R:9692742-9692862 1.0000 120 chrX:11806378-11806498 1.0000 120 chr3R:7913294-7913414 1.0000 120 chr3L:4541209-4541329 1.0000 120 chr3R:4280151-4280271 1.0000 120 chr3R:6657397-6657517 1.0000 120 chr2L:472960-473080 1.0000 120 chr2R:8127314-8127434 1.0000 120 chrX:9106930-9107050 1.0000 120 chr3R:31768350-31768470 1.0000 120 chr3R:21733054-21733174 1.0000 120 chr3L:12915536-12915656 1.0000 120 chr2L:7971520-7971640 1.0000 120 chrX:724604-724724 1.0000 120 chr2R:15542601-15542721 1.0000 120 chrX:17856777-17856897 1.0000 120 chr3L:8359127-8359247 1.0000 120 chr3R:13857495-13857615 1.0000 120 chr2R:15571454-15571574 1.0000 120 chr3R:16359272-16359392 1.0000 120 chr2R:12870183-12870303 1.0000 120 chr3R:22042576-22042696 1.0000 120 chr3R:31810062-31810182 1.0000 120 chrX:9062821-9062941 1.0000 120 chr3L:2117138-2117258 1.0000 120 chr3R:8234029-8234149 1.0000 120 chr3R:4687360-4687480 1.0000 120 chr2R:13805970-13806090 1.0000 120 chr3L:16218083-16218203 1.0000 120 chr3R:27175886-27176006 1.0000 120 chr3L:787750-787870 1.0000 120 chr3L:21080585-21080705 1.0000 120 chr3L:741843-741963 1.0000 120 chr3R:8664172-8664292 1.0000 120 chr2R:23761517-23761637 1.0000 120 chr3R:24906136-24906256 1.0000 120 chrX:15063824-15063944 1.0000 120 chr3L:7510951-7511071 1.0000 120 chr2R:22886025-22886145 1.0000 120 chr3L:16129521-16129641 1.0000 120 chr2R:21634503-21634623 1.0000 120 chr3R:27919495-27919615 1.0000 120 chr3L:8881862-8881982 1.0000 120 chr2L:20335084-20335204 1.0000 120 chr3L:16762354-16762474 1.0000 120 chr3L:14350271-14350391 1.0000 120 chrX:19643265-19643385 1.0000 120 chr2R:14082352-14082472 1.0000 120 chr2R:8322799-8322919 1.0000 120 chr2L:18005631-18005751 1.0000 120 chrX:17113414-17113534 1.0000 120 chr3L:12526687-12526807 1.0000 120 chr3R:18485398-18485518 1.0000 120 chr3R:21931434-21931554 1.0000 120 chr3R:30344729-30344849 1.0000 120 chr2L:172011-172131 1.0000 120 chr3L:16463978-16464098 1.0000 120 chr3L:19642761-19642881 1.0000 120 chrX:19878878-19878998 1.0000 120 chr3R:19648450-19648570 1.0000 120 chrX:15618060-15618180 1.0000 120 chrX:10463122-10463242 1.0000 120 chr3R:26019328-26019448 1.0000 120 chr2R:23632073-23632193 1.0000 120 chr2L:15392504-15392624 1.0000 120 chrX:12659245-12659365 1.0000 120 chr3R:27167527-27167647 1.0000 120 chr2L:19454455-19454575 1.0000 120 chr2L:9437270-9437390 1.0000 120 chr3R:16119587-16119707 1.0000 120 chrX:2455496-2455616 1.0000 120 chr3L:14534736-14534856 1.0000 120 chr3R:25652199-25652319 1.0000 120 chr3R:26462631-26462751 1.0000 120 chr3L:15240878-15240998 1.0000 120 chr3L:7611383-7611503 1.0000 120 chr2L:21005591-21005711 1.0000 120 chr3R:24996631-24996751 1.0000 120 chr3R:14373961-14374081 1.0000 120 chr2L:20340759-20340879 1.0000 120 chr2R:23862768-23862888 1.0000 120 chr3L:20914551-20914671 1.0000 120 chr2L:10220987-10221107 1.0000 120 chr3L:5128390-5128510 1.0000 120 chr3L:11815341-11815461 1.0000 120 chr3L:10928100-10928220 1.0000 120 chr2R:16812241-16812361 1.0000 120 chrX:2365522-2365642 1.0000 120 chr2L:20429033-20429153 1.0000 120 chr3L:12016287-12016407 1.0000 120 chr2R:12733028-12733148 1.0000 120 chr2L:847297-847417 1.0000 120 chr3L:14451666-14451786 1.0000 120 chr2R:9557580-9557700 1.0000 120 chr3R:30256375-30256495 1.0000 120 chr3L:9566966-9567086 1.0000 120 chr3L:15174248-15174368 1.0000 120 chrX:8601282-8601402 1.0000 120 chr3L:22065829-22065949 1.0000 120 chr3L:18079816-18079936 1.0000 120 chr3L:4722007-4722127 1.0000 120 chr2R:11323981-11324101 1.0000 120 chr3L:5152555-5152675 1.0000 120 chr2L:9448035-9448155 1.0000 120 chr3R:13807999-13808119 1.0000 120 chr3R:11244199-11244319 1.0000 120 chr3L:4708026-4708146 1.0000 120 chr2L:19193798-19193918 1.0000 120 chr3R:23732982-23733102 1.0000 120 chr2L:8364624-8364744 1.0000 120 chr2L:7611683-7611803 1.0000 120 chr3L:19315016-19315136 1.0000 120 chr3R:16368469-16368589 1.0000 120 chr3R:21580206-21580326 1.0000 120 chr3R:13934719-13934839 1.0000 120 chrX:5020145-5020265 1.0000 120 chr3R:14684085-14684205 1.0000 120 chr2R:18256976-18257096 1.0000 120 chr2L:8271105-8271225 1.0000 120 chr3L:5365282-5365402 1.0000 120 chr2R:11852498-11852618 1.0000 120 chr3R:21649581-21649701 1.0000 120 chr2R:20646216-20646336 1.0000 120 chr2L:19905366-19905486 1.0000 120 chr2R:21569800-21569920 1.0000 120 chr3R:13806815-13806935 1.0000 120 chr2L:2432954-2433074 1.0000 120 chr3R:18481106-18481226 1.0000 120 chr3R:30689799-30689919 1.0000 120 chr3L:10794037-10794157 1.0000 120 chr2L:16687954-16688074 1.0000 120 chr2L:19142597-19142717 1.0000 120 chr3R:31706260-31706380 1.0000 120 chr2L:18122317-18122437 1.0000 120 chr3R:13841054-13841174 1.0000 120 chr3R:13846004-13846124 1.0000 120 chr2R:18890993-18891113 1.0000 120 chr2L:6479608-6479728 1.0000 120 chr3L:16482252-16482372 1.0000 120 chr3L:21011424-21011544 1.0000 120 chr2R:24086534-24086654 1.0000 120 chrX:16966657-16966777 1.0000 120 chr3R:30805257-30805377 1.0000 120 chr2L:2162798-2162918 1.0000 120 chr2L:13056154-13056274 1.0000 120 chr2R:19446221-19446341 1.0000 120 chr2R:10213683-10213803 1.0000 120 chr3R:20286144-20286264 1.0000 120 chrX:14897772-14897892 1.0000 120 chrX:13226632-13226752 1.0000 120 chr3R:14847334-14847454 1.0000 120 chr3L:20989004-20989124 1.0000 120 chr3R:9159914-9160034 1.0000 120 chr3L:18672325-18672445 1.0000 120 chrX:9460716-9460836 1.0000 120 chr2L:20371531-20371651 1.0000 120 chr3L:14463948-14464068 1.0000 120 chr2R:10558277-10558397 1.0000 120 chrX:14074298-14074418 1.0000 120 chr2L:11052519-11052639 1.0000 120 chr2R:17514136-17514256 1.0000 120 chr2L:20381484-20381604 1.0000 120 chrX:19145202-19145322 1.0000 120 chr3L:16752559-16752679 1.0000 120 chr3R:31329995-31330115 1.0000 120 chr3L:2533844-2533964 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_achi/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/achi.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.322 C 0.185 G 0.183 T 0.311 Background letter frequencies (from file dataset with add-one prior applied): A 0.322 C 0.185 G 0.183 T 0.311 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAGCTGTT MEME-1 width = 8 sites = 42 llr = 409 E-value = 4.2e-026 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :9::::2: pos.-specific C a::a:::3 probability G ::a::a1: matrix T :1::a:67 bits 2.5 * ** * 2.2 * ** * 2.0 * ** * 1.7 * **** Relative 1.5 * **** Entropy 1.2 * **** (14.0 bits) 1.0 ****** * 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCTGTT consensus AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:11244199-11244319 23 1.11e-05 AAGCCGCTAT CAGCTGTT TGCAAGCTTT chr3L:11815341-11815461 110 1.11e-05 GATTATCGAA CAGCTGTT TAA chrX:15063824-15063944 11 1.11e-05 TGCAATACAC CAGCTGTT CGAGCAGTGC chr3R:31810062-31810182 93 1.11e-05 GACAGTCGAA CAGCTGTT CGTCCGGCGA chr2R:15542601-15542721 83 1.11e-05 TGCATTGGAT CAGCTGTT TGCGTGGCTC chr2R:22882627-22882747 57 1.11e-05 GACCGCGACG CAGCTGTT CAAATATACC chr2L:17501102-17501222 27 1.11e-05 GTGCGGAGAA CAGCTGTT GCGAAGCGAC chr2L:5096361-5096481 8 1.11e-05 CTAACAT CAGCTGTT GGGGGCGCGT chr3R:16441629-16441749 43 1.11e-05 GTGTCACAGT CAGCTGTT GCTTCCGCCC chr2L:11120261-11120381 45 1.11e-05 TGACAGGCAC CAGCTGTT TGTCTTATGC chr3L:6082791-6082911 13 1.11e-05 TTTCGCCGGT CAGCTGTT CATCCCCCGC chr2R:24664322-24664442 112 1.11e-05 GGATCTAAAT CAGCTGTT G chr2R:16336043-16336163 5 1.11e-05 ATGT CAGCTGTT CGTTGACAGT chr3L:17843470-17843590 37 1.11e-05 AGAATTAAAG CAGCTGTT GGCGCCTGTT chr2R:23553908-23554028 45 1.11e-05 TCAGGGCGAT CAGCTGTT GACGCACTAG chrX:17856575-17856695 87 1.11e-05 GACCGCGGGC CAGCTGTT GACGTTTAAA chr3R:23732982-23733102 12 1.77e-05 ATCGCCGACG CAGCTGTC ACATTGACAG chrX:12028990-12029110 25 1.77e-05 GCAGCTCGTG CAGCTGTC AAAAACGAAA chr3L:17849696-17849816 4 1.77e-05 TCA CAGCTGTC GTACCGGCTT chrX:18479736-18479856 73 1.77e-05 GATAGTTTGA CAGCTGTC CCGAAACCAG chr2L:6656299-6656419 27 1.77e-05 ATGACGAAAA CAGCTGTC AGAAAAAGCT chr3R:19027294-19027414 76 1.77e-05 TCACACTGCG CAGCTGTC AGAAGTCCAG chr2R:9692742-9692862 53 2.42e-05 CGCACAATTC CAGCTGGT GCTCGCTAGT chr3R:29279714-29279834 1 2.42e-05 . CAGCTGGT TTTTAAAATA chrX:8251654-8251774 47 2.42e-05 GCCGCGTTGA CAGCTGGT CAATCGCAAT chr2L:19454455-19454575 4 3.57e-05 TTT CAGCTGAT GCATGGGAAA chr2L:2376283-2376403 78 3.57e-05 TTGTCAAAAA CAGCTGAT CCAGACCAAG chr3L:8158904-8159024 3 3.57e-05 GC CAGCTGAT TGCTGTCAAG chr2L:2009782-2009902 16 3.57e-05 CTTTGCTAAA CAGCTGAT TCGGCTGCCA chr2R:14848320-14848440 107 3.57e-05 GGTTGGAAAT CAGCTGAT GCGCAA chr2L:2045433-2045553 3 3.57e-05 CA CAGCTGAT CGCCGAGTGC chr3L:8359127-8359247 60 3.96e-05 TTGCGTTTAT CAGCTGGC GAAAAACTTT chr2L:5100156-5100276 59 3.96e-05 CTGACAGCGT CAGCTGGC CTAACAGCAA chr3R:8340971-8341091 37 4.65e-05 TGAAATATGA CAGCTGAC AACTGGAGAT chr2L:8123924-8124044 65 4.65e-05 TTCGTTTTGA CAGCTGAC GTACACAGTG chr2L:12974963-12975083 51 4.65e-05 TTTCATTTGT CAGCTGAC GGCAATGACA chr3R:21580206-21580326 49 5.72e-05 ttgacagctg ctgctgtt gctactgcta chr3R:26019328-26019448 40 5.72e-05 TGCTAGGAAA CTGCTGTT ATAATATTAA chr3L:7510951-7511071 104 5.72e-05 TTCTCGTCCA CTGCTGTT GTTGAATTG chr3L:21080585-21080705 73 5.72e-05 TATTCTAGTT CTGCTGTT CTCCGTTCTG chr2R:15571454-15571574 9 6.36e-05 CTGACAGT CTGCTGTC ACCAAAAATA chr3R:25652199-25652319 52 8.47e-05 GCAAGCACAT CTGCTGGC GGTCAAAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:11244199-11244319 1.1e-05 22_[+1]_90 chr3L:11815341-11815461 1.1e-05 109_[+1]_3 chrX:15063824-15063944 1.1e-05 10_[+1]_102 chr3R:31810062-31810182 1.1e-05 92_[+1]_20 chr2R:15542601-15542721 1.1e-05 82_[+1]_30 chr2R:22882627-22882747 1.1e-05 56_[+1]_56 chr2L:17501102-17501222 1.1e-05 26_[+1]_86 chr2L:5096361-5096481 1.1e-05 7_[+1]_105 chr3R:16441629-16441749 1.1e-05 42_[+1]_70 chr2L:11120261-11120381 1.1e-05 44_[+1]_68 chr3L:6082791-6082911 1.1e-05 12_[+1]_100 chr2R:24664322-24664442 1.1e-05 111_[+1]_1 chr2R:16336043-16336163 1.1e-05 4_[+1]_108 chr3L:17843470-17843590 1.1e-05 36_[+1]_76 chr2R:23553908-23554028 1.1e-05 44_[+1]_68 chrX:17856575-17856695 1.1e-05 86_[+1]_26 chr3R:23732982-23733102 1.8e-05 11_[+1]_101 chrX:12028990-12029110 1.8e-05 24_[+1]_88 chr3L:17849696-17849816 1.8e-05 3_[+1]_109 chrX:18479736-18479856 1.8e-05 72_[+1]_40 chr2L:6656299-6656419 1.8e-05 26_[+1]_86 chr3R:19027294-19027414 1.8e-05 75_[+1]_37 chr2R:9692742-9692862 2.4e-05 52_[+1]_60 chr3R:29279714-29279834 2.4e-05 [+1]_112 chrX:8251654-8251774 2.4e-05 46_[+1]_66 chr2L:19454455-19454575 3.6e-05 3_[+1]_109 chr2L:2376283-2376403 3.6e-05 77_[+1]_35 chr3L:8158904-8159024 3.6e-05 2_[+1]_110 chr2L:2009782-2009902 3.6e-05 15_[+1]_97 chr2R:14848320-14848440 3.6e-05 106_[+1]_6 chr2L:2045433-2045553 3.6e-05 2_[+1]_110 chr3L:8359127-8359247 4e-05 59_[+1]_53 chr2L:5100156-5100276 4e-05 58_[+1]_54 chr3R:8340971-8341091 4.6e-05 36_[+1]_76 chr2L:8123924-8124044 4.6e-05 64_[+1]_48 chr2L:12974963-12975083 4.6e-05 50_[+1]_62 chr3R:21580206-21580326 5.7e-05 48_[+1]_64 chr3R:26019328-26019448 5.7e-05 39_[+1]_73 chr3L:7510951-7511071 5.7e-05 103_[+1]_9 chr3L:21080585-21080705 5.7e-05 72_[+1]_40 chr2R:15571454-15571574 6.4e-05 8_[+1]_104 chr3R:25652199-25652319 8.5e-05 51_[+1]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCTGTT width=8 seqs=42 chr3R:11244199-11244319 ( 23) CAGCTGTT 1 chr3L:11815341-11815461 ( 110) CAGCTGTT 1 chrX:15063824-15063944 ( 11) CAGCTGTT 1 chr3R:31810062-31810182 ( 93) CAGCTGTT 1 chr2R:15542601-15542721 ( 83) CAGCTGTT 1 chr2R:22882627-22882747 ( 57) CAGCTGTT 1 chr2L:17501102-17501222 ( 27) CAGCTGTT 1 chr2L:5096361-5096481 ( 8) CAGCTGTT 1 chr3R:16441629-16441749 ( 43) CAGCTGTT 1 chr2L:11120261-11120381 ( 45) CAGCTGTT 1 chr3L:6082791-6082911 ( 13) CAGCTGTT 1 chr2R:24664322-24664442 ( 112) CAGCTGTT 1 chr2R:16336043-16336163 ( 5) CAGCTGTT 1 chr3L:17843470-17843590 ( 37) CAGCTGTT 1 chr2R:23553908-23554028 ( 45) CAGCTGTT 1 chrX:17856575-17856695 ( 87) CAGCTGTT 1 chr3R:23732982-23733102 ( 12) CAGCTGTC 1 chrX:12028990-12029110 ( 25) CAGCTGTC 1 chr3L:17849696-17849816 ( 4) CAGCTGTC 1 chrX:18479736-18479856 ( 73) CAGCTGTC 1 chr2L:6656299-6656419 ( 27) CAGCTGTC 1 chr3R:19027294-19027414 ( 76) CAGCTGTC 1 chr2R:9692742-9692862 ( 53) CAGCTGGT 1 chr3R:29279714-29279834 ( 1) CAGCTGGT 1 chrX:8251654-8251774 ( 47) CAGCTGGT 1 chr2L:19454455-19454575 ( 4) CAGCTGAT 1 chr2L:2376283-2376403 ( 78) CAGCTGAT 1 chr3L:8158904-8159024 ( 3) CAGCTGAT 1 chr2L:2009782-2009902 ( 16) CAGCTGAT 1 chr2R:14848320-14848440 ( 107) CAGCTGAT 1 chr2L:2045433-2045553 ( 3) CAGCTGAT 1 chr3L:8359127-8359247 ( 60) CAGCTGGC 1 chr2L:5100156-5100276 ( 59) CAGCTGGC 1 chr3R:8340971-8341091 ( 37) CAGCTGAC 1 chr2L:8123924-8124044 ( 65) CAGCTGAC 1 chr2L:12974963-12975083 ( 51) CAGCTGAC 1 chr3R:21580206-21580326 ( 49) CTGCTGTT 1 chr3R:26019328-26019448 ( 40) CTGCTGTT 1 chr3L:7510951-7511071 ( 104) CTGCTGTT 1 chr3L:21080585-21080705 ( 73) CTGCTGTT 1 chr2R:15571454-15571574 ( 9) CTGCTGTC 1 chr3R:25652199-25652319 ( 52) CTGCTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8977 E= 4.2e-026 -1204 244 -1204 -1204 141 -1204 -1204 -112 -1204 -1204 245 -1204 -1204 244 -1204 -1204 -1204 -1204 -1204 168 -1204 -1204 245 -1204 -59 -1204 -36 105 -1204 75 -1204 115 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 4.2e-026 0.000000 1.000000 0.000000 0.000000 0.857143 0.000000 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.214286 0.000000 0.142857 0.642857 0.000000 0.309524 0.000000 0.690476 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-1 regular expression -------------------------------------------------------------------------------- CAGCTG[TA][TC] -------------------------------------------------------------------------------- Time 7.37 secs. ******************************************************************************** ******************************************************************************** MOTIF VGCTGYCA MEME-2 width = 8 sites = 58 llr = 479 E-value = 2.5e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif VGCTGYCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 31:::1:a pos.-specific C 3:7::49: probability G 39::a:1: matrix T 1:3a:5:: bits 2.5 * 2.2 * 2.0 * * 1.7 * ** ** Relative 1.5 **** ** Entropy 1.2 **** ** (11.9 bits) 1.0 **** ** 0.7 **** ** 0.5 ******* 0.2 ******** 0.0 -------- Multilevel CGCTGTCA consensus G T C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGCTGYCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:5757591-5757711 12 3.93e-06 CATTTTCAAG CGCTGCCA CTCAGTTGAA chrX:2275057-2275177 82 3.93e-06 GGAAGGCAGG CGCTGCCA CATCGCACTG chr3R:7913294-7913414 8 7.81e-06 GCCTTCG GGCTGCCA ACCTGTTTCA chrX:4117442-4117562 87 7.81e-06 ACAGCCGCAG GGCTGCCA ACTCGATGGG chr2R:14756229-14756349 98 7.81e-06 CCAAGCTTAG GGCTGCCA ACTGTAATTG chr2L:2009782-2009902 26 7.81e-06 CAGCTGATTC GGCTGCCA TTGTGAATGG chr2L:8709630-8709750 18 7.81e-06 CGCGGTGGAG GGCTGCCA GACTGTGATA chr3R:14901551-14901671 70 7.81e-06 TGCGCCGAGG GGCTGCCA ACTTTGGGGC chrX:15063824-15063944 60 1.44e-05 GAACTGGCAA CGCTGTCA GCAGCTGTCA chrX:18858076-18858196 101 1.44e-05 GTTATTACAT CGCTGTCA AAGATAAATC chr3L:3143421-3143541 37 1.44e-05 CAAAAGCGGG CGCTGTCA ACATGTGTTC chr2R:16500015-16500135 46 1.44e-05 GTGAATGTTT CGCTGTCA TTTTGACAGT chr3R:24931944-24932064 66 1.44e-05 CAACCCTGGC CGCTGTCA CTTGCTTTTT chr3R:21580206-21580326 89 2.10e-05 ctgcttgcgg ggctgtca actgcttcta chr2L:18951782-18951902 18 2.10e-05 TCTCTTTTTT GGCTGTCA CTTTCGGCGT chr3R:19875643-19875763 49 2.10e-05 ATGAAAAGCG GGCTGTCA AAACCAGAAT chr3R:10638800-10638920 32 2.10e-05 TGACAGTTCT GGCTGTCA AAATTGGCCA chr2L:16687954-16688074 113 2.78e-05 TAGTCTCAAA AGCTGCCA chr2R:10821585-10821705 69 2.78e-05 TTGGACACGG AGCTGCCA ACTCGCTTCA chrX:19643265-19643385 107 3.93e-05 GCCGACGTGG AGCTGTCA TCGGCA chr3L:14038391-14038511 63 3.93e-05 ACGTGTGCGA AGCTGTCA AAAATAATTT chr3L:6082791-6082911 83 3.93e-05 GGCACCAGGC AGCTGTCA AAGTGGCAAA chr3L:1665040-1665160 39 3.93e-05 AATGCTCCCT AGCTGTCA ATTCCACAAT chr2R:23553908-23554028 30 3.93e-05 AACAACTGAC AGCTGTCA GGGCGATCAG chrX:11129062-11129182 64 3.93e-05 CGATATCGAA AGCTGTCA CTTTTGAAAG chr2R:17514136-17514256 10 5.25e-05 TGTTAAAAG CGTTGCCA GATGCGGATA chr3R:16798505-16798625 52 5.25e-05 CGATGTCGGG CGTTGCCA GTCATATTTC chr2R:18141253-18141373 29 5.25e-05 CAAATGCCAA CGTTGCCA TGTCTACCGA chrX:8251654-8251774 26 5.25e-05 AGACCGACCG CGTTGCCA ACTGCCGCGT chrX:6674303-6674423 65 5.25e-05 TGCGCACGAG CGTTGCCA CCCCCAAGCA chr2L:2045433-2045553 18 5.25e-05 GATCGCCGAG TGCTGCCA CTTGTATCCT chr2R:16640886-16641006 4 5.90e-05 GAG GGTTGCCA CCGCACACCG chr2L:7611683-7611803 103 8.81e-05 AGCTCAGTTA TGCTGTCA ATATTAAAAG chr3R:30256375-30256495 6 8.81e-05 AAAGT TGCTGTCA GAATCAAATT chr3L:8158904-8159024 11 8.81e-05 GCCAGCTGAT TGCTGTCA AGATGAGCTT chrX:3880646-3880766 94 8.81e-05 GTACCTTTTG CGCTGACA TTTGGTCGAG chr2L:2376283-2376403 66 1.06e-04 CTCGAGTAGC GGTTGTCA AAAACAGCTG chr3L:9729915-9730035 47 1.06e-04 TGTAAAACCG GGCTGACA AGCGGTTGAT chr2L:5100156-5100276 47 1.06e-04 GTAACTGTCA GGCTGACA GCGTCAGCTG chrX:17856575-17856695 66 1.17e-04 AAATGCACAG AGTTGCCA ATCGACCGCG chr3L:5152555-5152675 112 1.52e-04 CACAAGCGAC CGCTGCGA A chrX:17856777-17856897 93 1.52e-04 AAGCAGCAAG AGTTGTCA GCGTAGATTA chr2L:5096361-5096481 68 1.52e-04 TCAGCTGTGC AGTTGTCA GTTTTTCGAC chr3R:19027294-19027414 43 1.52e-04 CCTCTCGGCC AGCTGACA AATTGCAGCA chrX:10463122-10463242 94 1.56e-04 TGGCAGCGCT GGCTGCGA GGGATGCGGC chr3L:7510951-7511071 64 1.70e-04 GAGTTGGCAA CACTGCCA CACTGTCAAA chr2R:11852498-11852618 13 1.83e-04 TGTTTTATTA GGCTGTGA ATAGGCTGTT chrX:17113414-17113534 15 1.94e-04 ACAGAATCCT TGTTGCCA CCAAACtaaa chr2R:7971950-7972070 49 2.24e-04 GCAGCGCACC GACTGTCA TTTTTGTATC chr2R:19446221-19446341 104 2.66e-04 GGCAGCGCAG TGTTGTCA ATCGATAAA chr2L:11120261-11120381 32 2.66e-04 ATTCAAGCAA CGTTGACA GGCACCAGCT chr2R:16336043-16336163 13 2.66e-04 GTCAGCTGTT CGTTGACA GTCACATGAC chr2L:6656299-6656419 66 2.66e-04 AGCTTTCTGC TGTTGTCA TCTGTCTCAT chrX:19145202-19145322 21 3.00e-04 TCTAACCATT AGCTGTGA CTACAATGTT chr2L:9437270-9437390 74 3.21e-04 CAGGCTGGCG AACTGTCA ATCACATGTC chr3R:4280151-4280271 43 3.21e-04 GTTTGGGGCC AACTGTCA AAACTGACAG chr3L:4541209-4541329 61 3.21e-04 AGTGCTGACG AACTGTCA CTATCTAAGT chr3R:13857495-13857615 21 4.19e-04 AAGGTGTAGA CTCTGCCA TAACATTATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGCTGYCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:5757591-5757711 3.9e-06 11_[+2]_101 chrX:2275057-2275177 3.9e-06 81_[+2]_31 chr3R:7913294-7913414 7.8e-06 7_[+2]_105 chrX:4117442-4117562 7.8e-06 86_[+2]_26 chr2R:14756229-14756349 7.8e-06 97_[+2]_15 chr2L:2009782-2009902 7.8e-06 25_[+2]_87 chr2L:8709630-8709750 7.8e-06 17_[+2]_95 chr3R:14901551-14901671 7.8e-06 69_[+2]_43 chrX:15063824-15063944 1.4e-05 59_[+2]_53 chrX:18858076-18858196 1.4e-05 100_[+2]_12 chr3L:3143421-3143541 1.4e-05 36_[+2]_76 chr2R:16500015-16500135 1.4e-05 45_[+2]_67 chr3R:24931944-24932064 1.4e-05 65_[+2]_47 chr3R:21580206-21580326 2.1e-05 88_[+2]_24 chr2L:18951782-18951902 2.1e-05 17_[+2]_95 chr3R:19875643-19875763 2.1e-05 48_[+2]_64 chr3R:10638800-10638920 2.1e-05 31_[+2]_81 chr2L:16687954-16688074 2.8e-05 112_[+2] chr2R:10821585-10821705 2.8e-05 68_[+2]_44 chrX:19643265-19643385 3.9e-05 106_[+2]_6 chr3L:14038391-14038511 3.9e-05 62_[+2]_50 chr3L:6082791-6082911 3.9e-05 82_[+2]_30 chr3L:1665040-1665160 3.9e-05 38_[+2]_74 chr2R:23553908-23554028 3.9e-05 29_[+2]_83 chrX:11129062-11129182 3.9e-05 63_[+2]_49 chr2R:17514136-17514256 5.2e-05 9_[+2]_103 chr3R:16798505-16798625 5.2e-05 51_[+2]_61 chr2R:18141253-18141373 5.2e-05 28_[+2]_84 chrX:8251654-8251774 5.2e-05 25_[+2]_87 chrX:6674303-6674423 5.2e-05 64_[+2]_48 chr2L:2045433-2045553 5.2e-05 17_[+2]_95 chr2R:16640886-16641006 5.9e-05 3_[+2]_109 chr2L:7611683-7611803 8.8e-05 102_[+2]_10 chr3R:30256375-30256495 8.8e-05 5_[+2]_107 chr3L:8158904-8159024 8.8e-05 10_[+2]_102 chrX:3880646-3880766 8.8e-05 93_[+2]_19 chr2L:2376283-2376403 0.00011 65_[+2]_47 chr3L:9729915-9730035 0.00011 46_[+2]_66 chr2L:5100156-5100276 0.00011 46_[+2]_66 chrX:17856575-17856695 0.00012 65_[+2]_47 chr3L:5152555-5152675 0.00015 111_[+2]_1 chrX:17856777-17856897 0.00015 92_[+2]_20 chr2L:5096361-5096481 0.00015 67_[+2]_45 chr3R:19027294-19027414 0.00015 42_[+2]_70 chrX:10463122-10463242 0.00016 93_[+2]_19 chr3L:7510951-7511071 0.00017 63_[+2]_49 chr2R:11852498-11852618 0.00018 12_[+2]_100 chrX:17113414-17113534 0.00019 14_[+2]_98 chr2R:7971950-7972070 0.00022 48_[+2]_64 chr2R:19446221-19446341 0.00027 103_[+2]_9 chr2L:11120261-11120381 0.00027 31_[+2]_81 chr2R:16336043-16336163 0.00027 12_[+2]_100 chr2L:6656299-6656419 0.00027 65_[+2]_47 chrX:19145202-19145322 0.0003 20_[+2]_92 chr2L:9437270-9437390 0.00032 73_[+2]_39 chr3R:4280151-4280271 0.00032 42_[+2]_70 chr3L:4541209-4541329 0.00032 60_[+2]_52 chr3R:13857495-13857615 0.00042 20_[+2]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGCTGYCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VGCTGYCA width=8 seqs=58 chr2R:5757591-5757711 ( 12) CGCTGCCA 1 chrX:2275057-2275177 ( 82) CGCTGCCA 1 chr3R:7913294-7913414 ( 8) GGCTGCCA 1 chrX:4117442-4117562 ( 87) GGCTGCCA 1 chr2R:14756229-14756349 ( 98) GGCTGCCA 1 chr2L:2009782-2009902 ( 26) GGCTGCCA 1 chr2L:8709630-8709750 ( 18) GGCTGCCA 1 chr3R:14901551-14901671 ( 70) GGCTGCCA 1 chrX:15063824-15063944 ( 60) CGCTGTCA 1 chrX:18858076-18858196 ( 101) CGCTGTCA 1 chr3L:3143421-3143541 ( 37) CGCTGTCA 1 chr2R:16500015-16500135 ( 46) CGCTGTCA 1 chr3R:24931944-24932064 ( 66) CGCTGTCA 1 chr3R:21580206-21580326 ( 89) GGCTGTCA 1 chr2L:18951782-18951902 ( 18) GGCTGTCA 1 chr3R:19875643-19875763 ( 49) GGCTGTCA 1 chr3R:10638800-10638920 ( 32) GGCTGTCA 1 chr2L:16687954-16688074 ( 113) AGCTGCCA 1 chr2R:10821585-10821705 ( 69) AGCTGCCA 1 chrX:19643265-19643385 ( 107) AGCTGTCA 1 chr3L:14038391-14038511 ( 63) AGCTGTCA 1 chr3L:6082791-6082911 ( 83) AGCTGTCA 1 chr3L:1665040-1665160 ( 39) AGCTGTCA 1 chr2R:23553908-23554028 ( 30) AGCTGTCA 1 chrX:11129062-11129182 ( 64) AGCTGTCA 1 chr2R:17514136-17514256 ( 10) CGTTGCCA 1 chr3R:16798505-16798625 ( 52) CGTTGCCA 1 chr2R:18141253-18141373 ( 29) CGTTGCCA 1 chrX:8251654-8251774 ( 26) CGTTGCCA 1 chrX:6674303-6674423 ( 65) CGTTGCCA 1 chr2L:2045433-2045553 ( 18) TGCTGCCA 1 chr2R:16640886-16641006 ( 4) GGTTGCCA 1 chr2L:7611683-7611803 ( 103) TGCTGTCA 1 chr3R:30256375-30256495 ( 6) TGCTGTCA 1 chr3L:8158904-8159024 ( 11) TGCTGTCA 1 chrX:3880646-3880766 ( 94) CGCTGACA 1 chr2L:2376283-2376403 ( 66) GGTTGTCA 1 chr3L:9729915-9730035 ( 47) GGCTGACA 1 chr2L:5100156-5100276 ( 47) GGCTGACA 1 chrX:17856575-17856695 ( 66) AGTTGCCA 1 chr3L:5152555-5152675 ( 112) CGCTGCGA 1 chrX:17856777-17856897 ( 93) AGTTGTCA 1 chr2L:5096361-5096481 ( 68) AGTTGTCA 1 chr3R:19027294-19027414 ( 43) AGCTGACA 1 chrX:10463122-10463242 ( 94) GGCTGCGA 1 chr3L:7510951-7511071 ( 64) CACTGCCA 1 chr2R:11852498-11852618 ( 13) GGCTGTGA 1 chrX:17113414-17113534 ( 15) TGTTGCCA 1 chr2R:7971950-7972070 ( 49) GACTGTCA 1 chr2R:19446221-19446341 ( 104) TGTTGTCA 1 chr2L:11120261-11120381 ( 32) CGTTGACA 1 chr2R:16336043-16336163 ( 13) CGTTGACA 1 chr2L:6656299-6656419 ( 66) TGTTGTCA 1 chrX:19145202-19145322 ( 21) AGCTGTGA 1 chr2L:9437270-9437390 ( 74) AACTGTCA 1 chr3R:4280151-4280271 ( 43) AACTGTCA 1 chr3L:4541209-4541329 ( 61) AACTGTCA 1 chr3R:13857495-13857615 ( 21) CTCTGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGCTGYCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.56683 E= 2.5e-013 -22 75 68 -137 -190 -1250 229 -417 -1250 201 -1250 -27 -1250 -1250 -1250 168 -1250 -1250 245 -1250 -164 110 -1250 68 -1250 233 -141 -1250 164 -1250 -1250 -1250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGCTGYCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 2.5e-013 0.275862 0.310345 0.293103 0.120690 0.086207 0.000000 0.896552 0.017241 0.000000 0.741379 0.000000 0.258621 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.103448 0.396552 0.000000 0.500000 0.000000 0.931034 0.068966 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGCTGYCA MEME-2 regular expression -------------------------------------------------------------------------------- [CGA]G[CT]TG[TC]CA -------------------------------------------------------------------------------- Time 13.59 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCAGCGC MEME-3 width = 8 sites = 32 llr = 295 E-value = 1.7e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCAGCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :2:83:1: pos.-specific C 1:8::a1a probability G 88227:8: matrix T 1:::::1: bits 2.5 * * 2.2 * * 2.0 * * 1.7 ** * * Relative 1.5 *** ** * Entropy 1.2 *** **** (13.3 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCAGCGC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:19446221-19446341 94 2.29e-06 TGGCGTCCCT GGCAGCGC AGTGTTGTCA chr2L:20429033-20429153 101 2.29e-06 ATACAACAAA GGCAGCGC AGCAGTCTCG chrX:10463122-10463242 85 2.29e-06 CGGCCGAGGT GGCAGCGC TGGCTGCGAG chrX:11129062-11129182 24 2.29e-06 GCCTAGCGAT GGCAGCGC GCTCGATAGC chr2L:9437270-9437390 43 9.87e-06 TCCACAGAGT GGCAACGC CATGTCAGGG chr3L:9729915-9730035 67 9.87e-06 CGGTTGATCT GGCAACGC TCTCTTAACC chr3L:17849696-17849816 36 9.87e-06 AAAGCCATCT GGCAACGC TCGCGAACGC chr2L:8123924-8124044 100 9.87e-06 GCTAGTGATT GGCAACGC GAGCTGGCCA chr3L:11815341-11815461 87 1.62e-05 TCGACCGGGT GACAGCGC CAGGAGATTA chr2R:15542601-15542721 49 1.62e-05 AGCAGTGTTG GACAGCGC TCGTAGGTGT chrX:19746014-19746134 72 1.62e-05 GCGATCAGGT GGCAGCCC CAAGGGAAAC chr2L:2130195-2130315 87 1.75e-05 CCCGATTCAT GGGGGCGC CACCCGTTCT chr3R:10331331-10331451 80 1.75e-05 CGAGTGCCCA GGGGGCGC GCGAGTGTAA chr2L:5096361-5096481 16 1.75e-05 ATCAGCTGTT GGGGGCGC GTGACACGAG chr2L:17501102-17501222 55 1.98e-05 TATCGATAGT GGCGACGC TATCGTTGGC chr3L:3143421-3143541 64 2.21e-05 CTAGGGTTAC CGCAGCGC GCGCATTTCG chr2L:12707743-12707863 67 2.21e-05 TAATCTCAAT CGCAGCGC TTTAAATGGA chr3R:16359272-16359392 88 2.61e-05 GTAATCGATG GGCAGCAC TGGTGTGCTC chr3R:6657397-6657517 83 2.61e-05 TGCTTGGTGT GGCAGCAC TGTAGCGTAT chrX:11891909-11892029 75 2.61e-05 AGTGCGATCT GGCAGCAC CGCTCAGAAC chr2L:2376283-2376403 46 2.97e-05 GTGCGAGCGA GACGGCGC CACTCGAGTA chr2L:18122317-18122437 107 3.76e-05 TTTCCCACCG GGCAGCTC TGAGCC chr3L:22065829-22065949 56 3.76e-05 GCCATTCGCA GGGAACGC CGGTTTGTTT chr2R:7971950-7972070 38 4.15e-05 CACTGTTTAC TGCAGCGC ACCGACTGTC chrX:12028990-12029110 7 4.15e-05 TACACA TGCAGCGC GCAGCTCGTG chr3L:14038391-14038511 28 5.13e-05 gagagagaga gagagCGC GCAAAAAGCA chr3R:10638800-10638920 52 5.13e-05 ATTGGCCACT GAGAGCGC CGTTTGGGGC chr3L:14350271-14350391 6 6.25e-05 CACCC GACAACGC CATCAACTTG chr3L:15161691-15161811 77 6.25e-05 AAAACAAAGT GGCAACCC TTCTATAATT chr3R:24931944-24932064 54 6.25e-05 CGCTGATGGT GGCAACCC TGGCCGCTGT chr2L:2009782-2009902 99 6.65e-05 TCGAAGAAGA AGCAGCGC AGTGCATTTA chr2R:20646216-20646336 110 7.10e-05 TCATTCTGTT GGCGGCTC GAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:19446221-19446341 2.3e-06 93_[+3]_19 chr2L:20429033-20429153 2.3e-06 100_[+3]_12 chrX:10463122-10463242 2.3e-06 84_[+3]_28 chrX:11129062-11129182 2.3e-06 23_[+3]_89 chr2L:9437270-9437390 9.9e-06 42_[+3]_70 chr3L:9729915-9730035 9.9e-06 66_[+3]_46 chr3L:17849696-17849816 9.9e-06 35_[+3]_77 chr2L:8123924-8124044 9.9e-06 99_[+3]_13 chr3L:11815341-11815461 1.6e-05 86_[+3]_26 chr2R:15542601-15542721 1.6e-05 48_[+3]_64 chrX:19746014-19746134 1.6e-05 71_[+3]_41 chr2L:2130195-2130315 1.7e-05 86_[+3]_26 chr3R:10331331-10331451 1.7e-05 79_[+3]_33 chr2L:5096361-5096481 1.7e-05 15_[+3]_97 chr2L:17501102-17501222 2e-05 54_[+3]_58 chr3L:3143421-3143541 2.2e-05 63_[+3]_49 chr2L:12707743-12707863 2.2e-05 66_[+3]_46 chr3R:16359272-16359392 2.6e-05 87_[+3]_25 chr3R:6657397-6657517 2.6e-05 82_[+3]_30 chrX:11891909-11892029 2.6e-05 74_[+3]_38 chr2L:2376283-2376403 3e-05 45_[+3]_67 chr2L:18122317-18122437 3.8e-05 106_[+3]_6 chr3L:22065829-22065949 3.8e-05 55_[+3]_57 chr2R:7971950-7972070 4.1e-05 37_[+3]_75 chrX:12028990-12029110 4.1e-05 6_[+3]_106 chr3L:14038391-14038511 5.1e-05 27_[+3]_85 chr3R:10638800-10638920 5.1e-05 51_[+3]_61 chr3L:14350271-14350391 6.2e-05 5_[+3]_107 chr3L:15161691-15161811 6.2e-05 76_[+3]_36 chr3R:24931944-24932064 6.2e-05 53_[+3]_59 chr2L:2009782-2009902 6.7e-05 98_[+3]_14 chr2R:20646216-20646336 7.1e-05 109_[+3]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCAGCGC width=8 seqs=32 chr2R:19446221-19446341 ( 94) GGCAGCGC 1 chr2L:20429033-20429153 ( 101) GGCAGCGC 1 chrX:10463122-10463242 ( 85) GGCAGCGC 1 chrX:11129062-11129182 ( 24) GGCAGCGC 1 chr2L:9437270-9437390 ( 43) GGCAACGC 1 chr3L:9729915-9730035 ( 67) GGCAACGC 1 chr3L:17849696-17849816 ( 36) GGCAACGC 1 chr2L:8123924-8124044 ( 100) GGCAACGC 1 chr3L:11815341-11815461 ( 87) GACAGCGC 1 chr2R:15542601-15542721 ( 49) GACAGCGC 1 chrX:19746014-19746134 ( 72) GGCAGCCC 1 chr2L:2130195-2130315 ( 87) GGGGGCGC 1 chr3R:10331331-10331451 ( 80) GGGGGCGC 1 chr2L:5096361-5096481 ( 16) GGGGGCGC 1 chr2L:17501102-17501222 ( 55) GGCGACGC 1 chr3L:3143421-3143541 ( 64) CGCAGCGC 1 chr2L:12707743-12707863 ( 67) CGCAGCGC 1 chr3R:16359272-16359392 ( 88) GGCAGCAC 1 chr3R:6657397-6657517 ( 83) GGCAGCAC 1 chrX:11891909-11892029 ( 75) GGCAGCAC 1 chr2L:2376283-2376403 ( 46) GACGGCGC 1 chr2L:18122317-18122437 ( 107) GGCAGCTC 1 chr3L:22065829-22065949 ( 56) GGGAACGC 1 chr2R:7971950-7972070 ( 38) TGCAGCGC 1 chrX:12028990-12029110 ( 7) TGCAGCGC 1 chr3L:14038391-14038511 ( 28) GAGAGCGC 1 chr3R:10638800-10638920 ( 52) GAGAGCGC 1 chr3L:14350271-14350391 ( 6) GACAACGC 1 chr3L:15161691-15161811 ( 77) GGCAACCC 1 chr3R:24931944-24932064 ( 54) GGCAACCC 1 chr2L:2009782-2009902 ( 99) AGCAGCGC 1 chr2R:20646216-20646336 ( 110) GGCGGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 1.7e-006 -336 -156 221 -231 -78 -1164 215 -1164 -1164 214 4 -1164 134 -1164 4 -1164 -19 -1164 197 -1164 -1164 244 -1164 -1164 -178 -98 204 -231 -1164 244 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 1.7e-006 0.031250 0.062500 0.843750 0.062500 0.187500 0.000000 0.812500 0.000000 0.000000 0.812500 0.187500 0.000000 0.812500 0.000000 0.187500 0.000000 0.281250 0.000000 0.718750 0.000000 0.000000 1.000000 0.000000 0.000000 0.093750 0.093750 0.750000 0.062500 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGCGC MEME-3 regular expression -------------------------------------------------------------------------------- GGCA[GA]CGC -------------------------------------------------------------------------------- Time 19.67 secs. ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-4 width = 8 sites = 20 llr = 202 E-value = 2.6e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1a:::a:a pos.-specific C :::a:::: probability G ::::a::: matrix T a:a:::a: bits 2.5 ** 2.2 ** 2.0 ** 1.7 ******* Relative 1.5 ******** Entropy 1.2 ******** (14.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:11852498-11852618 85 3.40e-05 TACCGAAAAA TATCGATA TTGTTCCATC chr2L:8364624-8364744 28 3.40e-05 TCAAAGCAGC TATCGATA ACGGGATGCT chr3L:11815341-11815461 46 3.40e-05 AGTTAGTAAC TATCGATA AGTCAGCGAT chr3L:4541209-4541329 40 3.40e-05 AAAAGGCGGC TATCGATA GTCAGTGCTG chr2L:18951782-18951902 52 3.40e-05 GACTGGCAAC TATCGATA GTACTGTCGA chr2R:7971950-7972070 63 3.40e-05 GTCATTTTTG TATCGATA TTTCAAGAAT chr2R:10821585-10821705 28 3.40e-05 TGCTGCATTA TATCGATA TGTTTAAAAA chr2L:17501102-17501222 45 3.40e-05 GCGAAGCGAC TATCGATA GTGGCGACGC chrX:12028990-12029110 99 3.40e-05 CTCACGCGAC TATCGATA GCTACCAGGG chr3R:17043486-17043606 63 3.40e-05 GACGTCAGAC TATCGATA GTACCATCGA chr2R:12510748-12510868 60 3.40e-05 TAGGGCCAAC TATCGATA ACTATCGCAC chr2L:11120261-11120381 63 3.40e-05 TGTCTTATGC TATCGATA GCGCCGACTT chr2R:14756229-14756349 63 3.40e-05 AATCGGCATG TATCGATA AGTCGTCAGT chrX:10385812-10385932 89 3.40e-05 CCCATCGGAC TATCGATA AAGTCGAACT chr3R:8340971-8341091 67 3.40e-05 ATCGATGTAT TATCGATA CATCGATGTC chr2R:24664322-24664442 59 3.40e-05 ACGGCTACAC TATCGATA TAAATTGTTA chr2L:18943940-18944060 58 3.40e-05 GAAGCTAAAC TATCGATA CGAGCGCGCA chr2R:12145646-12145766 15 3.40e-05 AAACAGCACC TATCGATA TACAGATAAC chrX:11129062-11129182 51 3.40e-05 CTACGCGCGT TATCGATA TCGAAAGCTG chrX:20511445-20511565 23 6.92e-05 CGCGCTCCGC AATCGATA GCTAAATGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:11852498-11852618 3.4e-05 84_[+4]_28 chr2L:8364624-8364744 3.4e-05 27_[+4]_85 chr3L:11815341-11815461 3.4e-05 45_[+4]_67 chr3L:4541209-4541329 3.4e-05 39_[+4]_73 chr2L:18951782-18951902 3.4e-05 51_[+4]_61 chr2R:7971950-7972070 3.4e-05 62_[+4]_50 chr2R:10821585-10821705 3.4e-05 27_[+4]_85 chr2L:17501102-17501222 3.4e-05 44_[+4]_68 chrX:12028990-12029110 3.4e-05 98_[+4]_14 chr3R:17043486-17043606 3.4e-05 62_[+4]_50 chr2R:12510748-12510868 3.4e-05 59_[+4]_53 chr2L:11120261-11120381 3.4e-05 62_[+4]_50 chr2R:14756229-14756349 3.4e-05 62_[+4]_50 chrX:10385812-10385932 3.4e-05 88_[+4]_24 chr3R:8340971-8341091 3.4e-05 66_[+4]_46 chr2R:24664322-24664442 3.4e-05 58_[+4]_54 chr2L:18943940-18944060 3.4e-05 57_[+4]_55 chr2R:12145646-12145766 3.4e-05 14_[+4]_98 chrX:11129062-11129182 3.4e-05 50_[+4]_62 chrX:20511445-20511565 6.9e-05 22_[+4]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=20 chr2R:11852498-11852618 ( 85) TATCGATA 1 chr2L:8364624-8364744 ( 28) TATCGATA 1 chr3L:11815341-11815461 ( 46) TATCGATA 1 chr3L:4541209-4541329 ( 40) TATCGATA 1 chr2L:18951782-18951902 ( 52) TATCGATA 1 chr2R:7971950-7972070 ( 63) TATCGATA 1 chr2R:10821585-10821705 ( 28) TATCGATA 1 chr2L:17501102-17501222 ( 45) TATCGATA 1 chrX:12028990-12029110 ( 99) TATCGATA 1 chr3R:17043486-17043606 ( 63) TATCGATA 1 chr2R:12510748-12510868 ( 60) TATCGATA 1 chr2L:11120261-11120381 ( 63) TATCGATA 1 chr2R:14756229-14756349 ( 63) TATCGATA 1 chrX:10385812-10385932 ( 89) TATCGATA 1 chr3R:8340971-8341091 ( 67) TATCGATA 1 chr2R:24664322-24664442 ( 59) TATCGATA 1 chr2L:18943940-18944060 ( 58) TATCGATA 1 chr2R:12145646-12145766 ( 15) TATCGATA 1 chrX:11129062-11129182 ( 51) TATCGATA 1 chrX:20511445-20511565 ( 23) AATCGATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.89693 E= 2.6e-003 -268 -1097 -1097 161 164 -1097 -1097 -1097 -1097 -1097 -1097 168 -1097 244 -1097 -1097 -1097 -1097 245 -1097 164 -1097 -1097 -1097 -1097 -1097 -1097 168 164 -1097 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 2.6e-003 0.050000 0.000000 0.000000 0.950000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 regular expression -------------------------------------------------------------------------------- TATCGATA -------------------------------------------------------------------------------- Time 25.68 secs. ******************************************************************************** ******************************************************************************** MOTIF TGACAGTT MEME-5 width = 8 sites = 55 llr = 437 E-value = 5.6e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACAGTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::7:a:11 pos.-specific C :::a:231 probability G :a1::6:: matrix T a:2::278 bits 2.5 * * 2.2 * * 2.0 * * 1.7 ** ** Relative 1.5 ** ** Entropy 1.2 ** ** (11.5 bits) 1.0 ** *** * 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGACAGTT consensus T CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACAGTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:25652199-25652319 27 1.93e-05 TCGGTCGACT TGACAGTT GCAAATTGCA chr3R:27919495-27919615 1 1.93e-05 . TGACAGTT GGaatattaa chr2L:12545740-12545860 42 1.93e-05 GGAAGGTAAA TGACAGTT TTGACACTTG chr3R:10638800-10638920 22 1.93e-05 CACTGTACAC TGACAGTT CTGGCTGTCA chr2R:16500015-16500135 57 1.93e-05 GCTGTCATTT TGACAGTT GCGAATGTCC chrX:10385812-10385932 35 1.93e-05 AAAAGGACTT TGACAGTT AACTCCCGCG chr2L:2009782-2009902 71 1.93e-05 ACAATCAGAT TGACAGTT GCAGCAAAAA chr3L:14992100-14992220 35 1.93e-05 TCAATCCAAA TGACAGTT AAGTTTGTAG chr2R:9712775-9712895 57 1.93e-05 GCCAAAAGTT TGACAGTT CGCTTTGGCG chr2R:16336043-16336163 27 1.93e-05 GACAGTCACA TGACAGTT TTTCGATCGA chr3R:21580206-21580326 40 3.08e-05 Actgcttgct tgacagct gctgctgttg chr3L:5152555-5152675 93 3.08e-05 GGCTTTGTTT TGACAGCT GCACAAGCGA chrX:19643265-19643385 55 3.08e-05 CTGCCACCAC TGACAGCT CGGCCCCAGT chr3R:17043486-17043606 86 3.08e-05 ATCGATATTT TGACAGCT ATACTGCTGA chr3L:15161691-15161811 95 3.08e-05 TTCTATAATT TGACAGCT cacgcacacc chr2R:24664322-24664442 78 3.08e-05 AAATTGTTAT TGACAGCT ACGTCTCAGC chrX:9106930-9107050 103 5.04e-05 TAGATATAAG TGACACTT GCCCGATCGA chr2L:8709630-8709750 82 5.04e-05 CAAGCTTTTT TGACACTT GCGAAAGCTA chr2R:12514644-12514764 55 5.04e-05 CATGTCAAAT TGACACTT TAACCAAAAT chr3R:8234029-8234149 38 6.90e-05 CGTTACATTT TGTCAGTT ACAGTTTTGT chr2R:9207336-9207456 83 6.90e-05 ACCCAGTTAA TGTCAGTT CCTGGTGCAA chr3L:6085372-6085492 77 8.06e-05 TAAGTTTGAA TGACACCT TCAGTGGTTT chr2R:18426278-18426398 55 9.17e-05 CAATTTCATC TGTCAGCT TTAAATATCC chr2L:5096361-5096481 56 9.17e-05 AATTTTCAGT TGTCAGCT GTGCAGTTGT chrX:20511445-20511565 65 1.03e-04 CTAGCCGACT TGGCAGTT CAAACGTCAA chr3L:16482252-16482372 15 1.47e-04 ACTTGCGCGA TGACATTT AAGATATATC chr3R:31810062-31810182 82 1.47e-04 AGAATAAAAC TGACAGTC GAACAGCTGT chr2R:12870183-12870303 78 1.47e-04 GATTTCTTTT TGACATTT GACTACGACT chr2L:472960-473080 14 1.47e-04 TAATTAACAT TGACATTT CAGAGAGCCT chr2R:10821585-10821705 96 1.47e-04 ATAAGTAATT TGACATTT TCATTAATTA chrX:793025-793145 85 1.47e-04 CTTGTCGCAG TGACATTT CGGGTAATCG chr2R:14962144-14962264 49 1.47e-04 ATGTCAACTT TGACATTT GAGGCACACA chrX:17856575-17856695 23 1.47e-04 GTTTTCAATT TGACATTT CCGCAACAGT chr3R:18485398-18485518 71 1.54e-04 TATAAAGCAC TGGCAGCT ATGAATTGAA chr3R:6657397-6657517 54 1.54e-04 CAAATTGTGG TGGCAGCT CGCTTATCGA chrX:19878878-19878998 81 1.72e-04 ATTATAAATA TGTCACTT AAACTATATA chrX:15063824-15063944 73 1.72e-04 TGTCAGCAGC TGTCACTT GCAACAAAAA chrX:2275057-2275177 63 1.72e-04 ATCGAGAGAC TGTCACTT GGGAAGGCAG chr3R:14901551-14901671 27 1.72e-04 TAAAAGGAGC TGTCACTT TCAAAATGGC chr2L:2045433-2045553 66 1.72e-04 GATGCTGTCA TGTCACTT ACATCTGAGC chr2L:2130195-2130315 49 1.99e-04 AGCTTCAATT TGACAGCC GTCGGTTCAA chr3L:15240878-15240998 89 2.19e-04 CTAGAGAATT TGACAGTA CTGTCATTCA chr2R:12145646-12145766 61 2.19e-04 CCAAGTGCAG TGACAGTA AGATTTTCGT chr2L:12974963-12975083 64 2.19e-04 CTGACGGCAA TGACAGTA GTCTTGTGAT chrX:3880646-3880766 58 2.30e-04 ATGCGCATGT TGTCACCT GACATTCCGC chr3R:23732982-23733102 24 2.73e-04 GCTGTCACAT TGACAGAT CGCTTGTGTG chr2R:15542601-15542721 13 2.73e-04 CACAGTCACA TGACAGCA AACATATGTC chr3R:4280151-4280271 55 2.73e-04 CTGTCAAAAC TGACAGCA GTGCTCTCTG chr2R:9692742-9692862 81 2.73e-04 CGTCTTGCTC TGGCACTT GCCCGAAATG chr3R:10331331-10331451 12 2.73e-04 ttctaccttc tGACAGAT GTGTTTGCCA chr2R:14756229-14756349 33 2.73e-04 TGTCAAAAAG TGACAGAT TCAAAACTTT chrX:18479939-18480059 80 2.85e-04 GCTTCTTTAA TGACACTC ACTGAATTGT chr2R:16812241-16812361 15 3.34e-04 TTTCAAAATT TGTCATTT TTAAATATTA chr3R:27167527-27167647 2 3.34e-04 A TGTCATTT ATAATGTATA chr2R:19446221-19446341 15 3.41e-04 TATCAGTCAG TGacaccc acacaccgcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACAGTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:25652199-25652319 1.9e-05 26_[+5]_86 chr3R:27919495-27919615 1.9e-05 [+5]_112 chr2L:12545740-12545860 1.9e-05 41_[+5]_71 chr3R:10638800-10638920 1.9e-05 21_[+5]_91 chr2R:16500015-16500135 1.9e-05 56_[+5]_56 chrX:10385812-10385932 1.9e-05 34_[+5]_78 chr2L:2009782-2009902 1.9e-05 70_[+5]_42 chr3L:14992100-14992220 1.9e-05 34_[+5]_78 chr2R:9712775-9712895 1.9e-05 56_[+5]_56 chr2R:16336043-16336163 1.9e-05 26_[+5]_86 chr3R:21580206-21580326 3.1e-05 39_[+5]_73 chr3L:5152555-5152675 3.1e-05 92_[+5]_20 chrX:19643265-19643385 3.1e-05 54_[+5]_58 chr3R:17043486-17043606 3.1e-05 85_[+5]_27 chr3L:15161691-15161811 3.1e-05 94_[+5]_18 chr2R:24664322-24664442 3.1e-05 77_[+5]_35 chrX:9106930-9107050 5e-05 102_[+5]_10 chr2L:8709630-8709750 5e-05 81_[+5]_31 chr2R:12514644-12514764 5e-05 54_[+5]_58 chr3R:8234029-8234149 6.9e-05 37_[+5]_75 chr2R:9207336-9207456 6.9e-05 82_[+5]_30 chr3L:6085372-6085492 8.1e-05 76_[+5]_36 chr2R:18426278-18426398 9.2e-05 54_[+5]_58 chr2L:5096361-5096481 9.2e-05 55_[+5]_57 chrX:20511445-20511565 0.0001 64_[+5]_48 chr3L:16482252-16482372 0.00015 14_[+5]_98 chr3R:31810062-31810182 0.00015 81_[+5]_31 chr2R:12870183-12870303 0.00015 77_[+5]_35 chr2L:472960-473080 0.00015 13_[+5]_99 chr2R:10821585-10821705 0.00015 95_[+5]_17 chrX:793025-793145 0.00015 84_[+5]_28 chr2R:14962144-14962264 0.00015 48_[+5]_64 chrX:17856575-17856695 0.00015 22_[+5]_90 chr3R:18485398-18485518 0.00015 70_[+5]_42 chr3R:6657397-6657517 0.00015 53_[+5]_59 chrX:19878878-19878998 0.00017 80_[+5]_32 chrX:15063824-15063944 0.00017 72_[+5]_40 chrX:2275057-2275177 0.00017 62_[+5]_50 chr3R:14901551-14901671 0.00017 26_[+5]_86 chr2L:2045433-2045553 0.00017 65_[+5]_47 chr2L:2130195-2130315 0.0002 48_[+5]_64 chr3L:15240878-15240998 0.00022 88_[+5]_24 chr2R:12145646-12145766 0.00022 60_[+5]_52 chr2L:12974963-12975083 0.00022 63_[+5]_49 chrX:3880646-3880766 0.00023 57_[+5]_55 chr3R:23732982-23733102 0.00027 23_[+5]_89 chr2R:15542601-15542721 0.00027 12_[+5]_100 chr3R:4280151-4280271 0.00027 54_[+5]_58 chr2R:9692742-9692862 0.00027 80_[+5]_32 chr3R:10331331-10331451 0.00027 11_[+5]_101 chr2R:14756229-14756349 0.00027 32_[+5]_80 chrX:18479939-18480059 0.00028 79_[+5]_33 chr2R:16812241-16812361 0.00033 14_[+5]_98 chr3R:27167527-27167647 0.00033 1_[+5]_111 chr2R:19446221-19446341 0.00034 14_[+5]_98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACAGTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACAGTT width=8 seqs=55 chr3R:25652199-25652319 ( 27) TGACAGTT 1 chr3R:27919495-27919615 ( 1) TGACAGTT 1 chr2L:12545740-12545860 ( 42) TGACAGTT 1 chr3R:10638800-10638920 ( 22) TGACAGTT 1 chr2R:16500015-16500135 ( 57) TGACAGTT 1 chrX:10385812-10385932 ( 35) TGACAGTT 1 chr2L:2009782-2009902 ( 71) TGACAGTT 1 chr3L:14992100-14992220 ( 35) TGACAGTT 1 chr2R:9712775-9712895 ( 57) TGACAGTT 1 chr2R:16336043-16336163 ( 27) TGACAGTT 1 chr3R:21580206-21580326 ( 40) TGACAGCT 1 chr3L:5152555-5152675 ( 93) TGACAGCT 1 chrX:19643265-19643385 ( 55) TGACAGCT 1 chr3R:17043486-17043606 ( 86) TGACAGCT 1 chr3L:15161691-15161811 ( 95) TGACAGCT 1 chr2R:24664322-24664442 ( 78) TGACAGCT 1 chrX:9106930-9107050 ( 103) TGACACTT 1 chr2L:8709630-8709750 ( 82) TGACACTT 1 chr2R:12514644-12514764 ( 55) TGACACTT 1 chr3R:8234029-8234149 ( 38) TGTCAGTT 1 chr2R:9207336-9207456 ( 83) TGTCAGTT 1 chr3L:6085372-6085492 ( 77) TGACACCT 1 chr2R:18426278-18426398 ( 55) TGTCAGCT 1 chr2L:5096361-5096481 ( 56) TGTCAGCT 1 chrX:20511445-20511565 ( 65) TGGCAGTT 1 chr3L:16482252-16482372 ( 15) TGACATTT 1 chr3R:31810062-31810182 ( 82) TGACAGTC 1 chr2R:12870183-12870303 ( 78) TGACATTT 1 chr2L:472960-473080 ( 14) TGACATTT 1 chr2R:10821585-10821705 ( 96) TGACATTT 1 chrX:793025-793145 ( 85) TGACATTT 1 chr2R:14962144-14962264 ( 49) TGACATTT 1 chrX:17856575-17856695 ( 23) TGACATTT 1 chr3R:18485398-18485518 ( 71) TGGCAGCT 1 chr3R:6657397-6657517 ( 54) TGGCAGCT 1 chrX:19878878-19878998 ( 81) TGTCACTT 1 chrX:15063824-15063944 ( 73) TGTCACTT 1 chrX:2275057-2275177 ( 63) TGTCACTT 1 chr3R:14901551-14901671 ( 27) TGTCACTT 1 chr2L:2045433-2045553 ( 66) TGTCACTT 1 chr2L:2130195-2130315 ( 49) TGACAGCC 1 chr3L:15240878-15240998 ( 89) TGACAGTA 1 chr2R:12145646-12145766 ( 61) TGACAGTA 1 chr2L:12974963-12975083 ( 64) TGACAGTA 1 chrX:3880646-3880766 ( 58) TGTCACCT 1 chr3R:23732982-23733102 ( 24) TGACAGAT 1 chr2R:15542601-15542721 ( 13) TGACAGCA 1 chr3R:4280151-4280271 ( 55) TGACAGCA 1 chr2R:9692742-9692862 ( 81) TGGCACTT 1 chr3R:10331331-10331451 ( 12) TGACAGAT 1 chr2R:14756229-14756349 ( 33) TGACAGAT 1 chrX:18479939-18480059 ( 80) TGACACTC 1 chr2R:16812241-16812361 ( 15) TGTCATTT 1 chr3R:27167527-27167647 ( 2) TGTCATTT 1 chr2R:19446221-19446341 ( 15) TGACACCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACAGTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.59032 E= 5.6e-002 -1243 -1243 -1243 168 -1243 -1243 245 -1243 114 -1243 -133 -51 -1243 244 -1243 -1243 164 -1243 -1243 -1243 -1243 36 171 -93 -256 66 -1243 107 -182 -134 -1243 143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACAGTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 5.6e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.709091 0.000000 0.072727 0.218182 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.236364 0.600000 0.163636 0.054545 0.290909 0.000000 0.654545 0.090909 0.072727 0.000000 0.836364 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACAGTT MEME-5 regular expression -------------------------------------------------------------------------------- TG[AT]CA[GC][TC]T -------------------------------------------------------------------------------- Time 31.67 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11129062-11129182 1.11e-07 23_[+3(2.29e-06)]_19_[+4(3.40e-05)]_\ 5_[+2(3.93e-05)]_49 chr2L:2045433-2045553 2.47e-04 2_[+1(3.57e-05)]_7_[+2(5.25e-05)]_\ 22_[+2(5.25e-05)]_2_[+2(8.81e-05)]_55 chr2R:12514644-12514764 5.77e-02 54_[+5(5.04e-05)]_58 chr2L:12974963-12975083 3.42e-03 50_[+1(4.65e-05)]_62 chrX:17856575-17856695 3.09e-04 86_[+1(1.11e-05)]_26 chr2L:8123924-8124044 2.52e-05 19_[+3(4.15e-05)]_34_[+5(3.08e-05)]_\ 30_[+3(9.87e-06)]_13 chr2R:23553908-23554028 3.31e-05 28_[+1(1.77e-05)]_8_[+1(1.11e-05)]_\ 68 chrX:6674303-6674423 7.74e-03 64_[+2(5.25e-05)]_48 chr3L:17843470-17843590 2.31e-03 36_[+1(1.11e-05)]_76 chr3R:19027294-19027414 2.74e-04 41_[+1(4.65e-05)]_26_[+1(1.77e-05)]_\ 37 chr3R:14901551-14901671 1.77e-04 23_[+2(3.93e-05)]_38_[+2(7.81e-06)]_\ 43 chr2R:12145646-12145766 2.28e-03 14_[+4(3.40e-05)]_98 chrX:3880646-3880766 9.91e-03 93_[+2(8.81e-05)]_19 chr3R:24931944-24932064 2.93e-05 53_[+3(6.25e-05)]_4_[+2(1.44e-05)]_\ 47 chr2R:20319060-20319180 1.41e-01 120 chrX:8251654-8251774 1.36e-05 25_[+2(5.25e-05)]_13_[+1(2.42e-05)]_\ 66 chr2L:5100156-5100276 4.32e-04 58_[+1(3.96e-05)]_54 chr2L:6656299-6656419 7.23e-04 26_[+1(1.77e-05)]_27_[+1(5.72e-05)]_\ 51 chrX:11891909-11892029 2.39e-03 74_[+3(2.61e-05)]_38 chr2L:8709630-8709750 1.08e-03 17_[+2(7.81e-06)]_56_[+5(5.04e-05)]_\ 31 chr2R:16336043-16336163 1.36e-05 4_[+1(1.11e-05)]_14_[+5(1.93e-05)]_\ 86 chr2R:9712775-9712895 2.99e-02 56_[+5(1.93e-05)]_56 chr2R:14962144-14962264 1.50e-01 120 chr3L:14992100-14992220 6.58e-03 34_[+5(1.93e-05)]_78 chr2R:18141253-18141373 3.11e-02 28_[+2(5.25e-05)]_84 chrX:18479736-18479856 2.76e-04 72_[+1(1.77e-05)]_40 chr2L:10341573-10341693 5.51e-01 120 chr2R:14848320-14848440 7.45e-02 106_[+1(3.57e-05)]_6 chrX:2275057-2275177 7.72e-05 39_[+4(6.92e-05)]_34_[+2(3.93e-06)]_\ 31 chr2L:18943940-18944060 1.29e-02 39_[+4(6.92e-05)]_10_[+4(3.40e-05)]_\ 55 chr2L:12707743-12707863 6.43e-02 66_[+3(2.21e-05)]_46 chr2R:24664322-24664442 1.14e-06 58_[+4(3.40e-05)]_11_[+5(3.08e-05)]_\ 26_[+1(1.11e-05)]_1 chr3L:15161691-15161811 1.19e-03 76_[+3(6.25e-05)]_10_[+5(3.08e-05)]_\ 18 chr2R:12514896-12515016 4.17e-01 120 chr3R:23358555-23358675 6.92e-01 120 chr2L:2009782-2009902 6.25e-07 15_[+1(3.57e-05)]_2_[+2(7.81e-06)]_\ 37_[+5(1.93e-05)]_20_[+3(6.65e-05)]_14 chr3L:1665040-1665160 1.87e-02 38_[+2(3.93e-05)]_74 chr3R:8340971-8341091 5.18e-06 33_[+5(3.08e-05)]_25_[+4(3.40e-05)]_\ 46 chrX:10385812-10385932 9.12e-04 34_[+5(1.93e-05)]_46_[+4(3.40e-05)]_\ 24 chr2R:16640886-16641006 3.08e-03 3_[+2(5.90e-05)]_109 chr2R:14756229-14756349 6.73e-05 62_[+4(3.40e-05)]_27_[+2(7.81e-06)]_\ 15 chr2R:16500015-16500135 4.72e-04 45_[+2(1.44e-05)]_3_[+5(1.93e-05)]_\ 56 chr3L:6082791-6082911 2.23e-05 12_[+1(1.11e-05)]_61_[+1(1.77e-05)]_\ 31 chrX:1380769-1380889 3.58e-01 120 chr2L:11120261-11120381 3.73e-05 44_[+1(1.11e-05)]_10_[+4(3.40e-05)]_\ 50 chr3L:3143421-3143541 1.43e-03 36_[+2(1.44e-05)]_19_[+3(2.21e-05)]_\ 49 chr3R:16441629-16441749 1.77e-04 42_[+1(1.11e-05)]_70 chr2R:12510748-12510868 1.53e-01 59_[+4(3.40e-05)]_53 chr2L:5096361-5096481 3.39e-06 7_[+1(1.11e-05)]_[+3(1.75e-05)]_32_\ [+5(9.17e-05)]_7_[+5(6.90e-05)]_42 chrX:18479939-18480059 9.89e-02 120 chr3R:10638800-10638920 5.94e-05 21_[+5(1.93e-05)]_2_[+2(2.10e-05)]_\ 12_[+3(5.13e-05)]_61 chrX:793025-793145 6.36e-02 120 chr3L:14038391-14038511 1.41e-03 27_[+3(5.13e-05)]_27_[+2(3.93e-05)]_\ 50 chr2R:18426278-18426398 2.13e-03 54_[+5(9.17e-05)]_58 chr2R:21634304-21634424 9.65e-01 120 chr3R:17043486-17043606 5.19e-04 62_[+4(3.40e-05)]_15_[+5(3.08e-05)]_\ 27 chrX:18858076-18858196 2.73e-02 100_[+2(1.44e-05)]_12 chr3L:17849696-17849816 3.47e-04 3_[+1(1.77e-05)]_24_[+3(9.87e-06)]_\ 77 chrX:12028990-12029110 1.47e-06 6_[+3(4.15e-05)]_10_[+1(1.77e-05)]_\ 66_[+4(3.40e-05)]_14 chr3R:29279714-29279834 7.85e-02 [+1(2.42e-05)]_112 chr3R:23061401-23061521 3.20e-03 64_[+4(6.92e-05)]_14_[+4(6.92e-05)]_\ 26 chr2L:12545740-12545860 4.59e-03 41_[+5(1.93e-05)]_1_[+5(5.04e-05)]_\ 62 chr3L:9729915-9730035 8.35e-04 66_[+3(9.87e-06)]_46 chr2L:17501102-17501222 3.04e-06 26_[+1(1.11e-05)]_10_[+4(3.40e-05)]_\ 2_[+3(1.98e-05)]_58 chr2R:21323942-21324062 1.80e-01 120 chr2R:9207336-9207456 1.26e-01 82_[+5(6.90e-05)]_30 chr3R:19875643-19875763 2.83e-02 48_[+2(2.10e-05)]_64 chr2R:10821585-10821705 9.87e-05 27_[+4(3.40e-05)]_33_[+2(2.78e-05)]_\ 44 chr3L:8158904-8159024 6.76e-03 2_[+1(3.57e-05)]_[+2(8.81e-05)]_102 chr2L:2376283-2376403 4.09e-04 45_[+3(2.97e-05)]_24_[+1(3.57e-05)]_\ 35 chr3R:10331331-10331451 1.72e-03 79_[+3(1.75e-05)]_33 chrX:19746014-19746134 6.48e-03 71_[+3(1.62e-05)]_41 chr3L:1329798-1329918 3.68e-01 120 chr2R:22882627-22882747 2.86e-03 56_[+1(1.11e-05)]_56 chr2R:7971950-7972070 3.77e-05 37_[+3(4.15e-05)]_17_[+4(3.40e-05)]_\ 50 chr2L:18951782-18951902 1.07e-04 17_[+2(2.10e-05)]_26_[+4(3.40e-05)]_\ 61 chr2R:23862559-23862679 6.37e-01 120 chr3R:16798505-16798625 6.93e-02 51_[+2(5.25e-05)]_61 chrX:4117442-4117562 7.71e-03 86_[+2(7.81e-06)]_26 chrX:16873193-16873313 9.91e-01 120 chrX:20511445-20511565 1.30e-02 22_[+4(6.92e-05)]_90 chr2L:2130195-2130315 5.05e-04 86_[+3(1.75e-05)]_26 chr3L:6085372-6085492 3.15e-02 76_[+5(8.06e-05)]_36 chr2R:5757591-5757711 4.47e-03 11_[+2(3.93e-06)]_101 chr2R:9692742-9692862 7.86e-03 52_[+1(2.42e-05)]_60 chrX:11806378-11806498 4.17e-01 120 chr3R:7913294-7913414 3.48e-02 7_[+2(7.81e-06)]_105 chr3L:4541209-4541329 1.37e-03 39_[+4(3.40e-05)]_73 chr3R:4280151-4280271 1.62e-03 120 chr3R:6657397-6657517 9.03e-05 54_[+3(3.76e-05)]_20_[+3(2.61e-05)]_\ 30 chr2L:472960-473080 1.79e-02 120 chr2R:8127314-8127434 9.01e-01 120 chrX:9106930-9107050 1.40e-01 102_[+5(5.04e-05)]_10 chr3R:31768350-31768470 8.61e-01 120 chr3R:21733054-21733174 6.63e-01 120 chr3L:12915536-12915656 9.50e-01 120 chr2L:7971520-7971640 9.69e-01 120 chrX:724604-724724 9.91e-01 120 chr2R:15542601-15542721 1.29e-04 48_[+3(1.62e-05)]_26_[+1(1.11e-05)]_\ 30 chrX:17856777-17856897 1.04e-01 120 chr3L:8359127-8359247 7.96e-02 59_[+1(3.96e-05)]_53 chr3R:13857495-13857615 3.64e-01 120 chr2R:15571454-15571574 4.43e-04 8_[+1(6.36e-05)]_104 chr3R:16359272-16359392 4.44e-02 87_[+3(2.61e-05)]_25 chr2R:12870183-12870303 5.24e-02 120 chr3R:22042576-22042696 5.10e-02 120 chr3R:31810062-31810182 1.55e-03 92_[+1(1.11e-05)]_20 chrX:9062821-9062941 3.65e-01 120 chr3L:2117138-2117258 8.74e-01 120 chr3R:8234029-8234149 4.33e-02 37_[+5(6.90e-05)]_75 chr3R:4687360-4687480 7.79e-01 120 chr2R:13805970-13806090 2.82e-01 120 chr3L:16218083-16218203 5.16e-01 120 chr3R:27175886-27176006 8.72e-01 120 chr3L:787750-787870 9.55e-01 120 chr3L:21080585-21080705 2.99e-01 72_[+1(5.72e-05)]_40 chr3L:741843-741963 8.47e-01 120 chr3R:8664172-8664292 8.85e-01 120 chr2R:23761517-23761637 9.57e-01 120 chr3R:24906136-24906256 9.97e-01 120 chrX:15063824-15063944 6.34e-07 10_[+1(1.11e-05)]_36_[+3(9.87e-06)]_\ 6_[+1(1.77e-05)]_44 chr3L:7510951-7511071 2.67e-04 58_[+3(9.47e-05)]_37_[+1(5.72e-05)]_\ 9 chr2R:22886025-22886145 3.08e-01 120 chr3L:16129521-16129641 1.56e-03 120 chr2R:21634503-21634623 9.98e-01 120 chr3R:27919495-27919615 5.23e-02 [+5(1.93e-05)]_112 chr3L:8881862-8881982 2.77e-01 120 chr2L:20335084-20335204 9.91e-01 120 chr3L:16762354-16762474 9.28e-01 120 chr3L:14350271-14350391 6.53e-02 5_[+3(6.25e-05)]_107 chrX:19643265-19643385 8.40e-05 54_[+5(3.08e-05)]_44_[+2(3.93e-05)]_\ 6 chr2R:14082352-14082472 8.46e-01 120 chr2R:8322799-8322919 7.54e-01 120 chr2L:18005631-18005751 8.11e-01 120 chrX:17113414-17113534 1.54e-01 120 chr3L:12526687-12526807 8.32e-01 120 chr3R:18485398-18485518 3.80e-02 120 chr3R:21931434-21931554 3.23e-01 120 chr3R:30344729-30344849 2.72e-01 120 chr2L:172011-172131 5.96e-01 120 chr3L:16463978-16464098 9.73e-01 120 chr3L:19642761-19642881 3.47e-01 120 chrX:19878878-19878998 3.27e-01 120 chr3R:19648450-19648570 5.65e-01 120 chrX:15618060-15618180 8.35e-01 120 chrX:10463122-10463242 1.55e-04 84_[+3(2.29e-06)]_28 chr3R:26019328-26019448 1.50e-01 39_[+1(5.72e-05)]_73 chr2R:23632073-23632193 9.66e-01 120 chr2L:15392504-15392624 9.40e-01 120 chrX:12659245-12659365 2.79e-01 120 chr3R:27167527-27167647 3.51e-01 120 chr2L:19454455-19454575 6.93e-02 3_[+1(3.57e-05)]_109 chr2L:9437270-9437390 4.78e-03 42_[+3(9.87e-06)]_70 chr3R:16119587-16119707 3.20e-01 120 chrX:2455496-2455616 2.90e-01 120 chr3L:14534736-14534856 9.47e-01 120 chr3R:25652199-25652319 1.10e-03 26_[+5(1.93e-05)]_17_[+1(8.47e-05)]_\ 61 chr3R:26462631-26462751 9.40e-01 120 chr3L:15240878-15240998 1.07e-02 120 chr3L:7611383-7611503 3.52e-01 120 chr2L:21005591-21005711 7.48e-01 120 chr3R:24996631-24996751 8.85e-01 120 chr3R:14373961-14374081 5.95e-01 120 chr2L:20340759-20340879 1.33e-01 120 chr2R:23862768-23862888 8.54e-02 120 chr3L:20914551-20914671 6.42e-01 120 chr2L:10220987-10221107 6.08e-01 120 chr3L:5128390-5128510 5.68e-02 120 chr3L:11815341-11815461 4.64e-06 45_[+4(3.40e-05)]_33_[+3(1.62e-05)]_\ 15_[+1(1.11e-05)]_3 chr3L:10928100-10928220 6.70e-01 120 chr2R:16812241-16812361 7.57e-02 120 chrX:2365522-2365642 9.63e-01 120 chr2L:20429033-20429153 2.78e-03 100_[+3(2.29e-06)]_12 chr3L:12016287-12016407 5.70e-01 120 chr2R:12733028-12733148 9.54e-01 120 chr2L:847297-847417 1.18e-01 120 chr3L:14451666-14451786 1.19e-01 120 chr2R:9557580-9557700 7.77e-01 120 chr3R:30256375-30256495 4.22e-02 5_[+2(8.81e-05)]_107 chr3L:9566966-9567086 9.96e-01 120 chr3L:15174248-15174368 8.02e-01 120 chrX:8601282-8601402 5.14e-01 120 chr3L:22065829-22065949 5.06e-03 55_[+3(3.76e-05)]_57 chr3L:18079816-18079936 8.62e-01 120 chr3L:4722007-4722127 7.00e-01 120 chr2R:11323981-11324101 6.77e-01 120 chr3L:5152555-5152675 1.22e-04 92_[+5(3.08e-05)]_20 chr2L:9448035-9448155 1.56e-01 120 chr3R:13807999-13808119 5.95e-01 120 chr3R:11244199-11244319 2.12e-03 22_[+1(1.11e-05)]_90 chr3L:4708026-4708146 9.96e-01 120 chr2L:19193798-19193918 4.87e-01 120 chr3R:23732982-23733102 2.01e-04 11_[+1(1.77e-05)]_101 chr2L:8364624-8364744 9.07e-03 27_[+4(3.40e-05)]_85 chr2L:7611683-7611803 9.37e-02 102_[+2(8.81e-05)]_10 chr3L:19315016-19315136 9.36e-01 120 chr3R:16368469-16368589 5.11e-01 120 chr3R:21580206-21580326 8.45e-05 39_[+5(3.08e-05)]_1_[+1(5.72e-05)]_\ 32_[+2(2.10e-05)]_24 chr3R:13934719-13934839 2.72e-01 120 chrX:5020145-5020265 1.00e+00 120 chr3R:14684085-14684205 8.95e-01 120 chr2R:18256976-18257096 9.84e-01 120 chr2L:8271105-8271225 3.47e-01 120 chr3L:5365282-5365402 7.34e-01 120 chr2R:11852498-11852618 8.93e-03 65_[+4(6.92e-05)]_11_[+4(3.40e-05)]_\ 28 chr3R:21649581-21649701 9.28e-01 120 chr2R:20646216-20646336 2.63e-02 109_[+3(7.10e-05)]_3 chr2L:19905366-19905486 8.94e-01 120 chr2R:21569800-21569920 8.63e-01 120 chr3R:13806815-13806935 4.19e-01 120 chr2L:2432954-2433074 9.70e-01 120 chr3R:18481106-18481226 3.77e-01 120 chr3R:30689799-30689919 8.22e-01 120 chr3L:10794037-10794157 1.66e-01 120 chr2L:16687954-16688074 1.11e-02 112_[+2(2.78e-05)] chr2L:19142597-19142717 8.39e-01 120 chr3R:31706260-31706380 2.41e-01 120 chr2L:18122317-18122437 7.18e-03 106_[+3(3.76e-05)]_6 chr3R:13841054-13841174 6.52e-01 120 chr3R:13846004-13846124 9.95e-01 120 chr2R:18890993-18891113 2.84e-01 120 chr2L:6479608-6479728 9.93e-01 120 chr3L:16482252-16482372 2.09e-01 120 chr3L:21011424-21011544 4.71e-01 120 chr2R:24086534-24086654 9.95e-02 30_[+4(3.40e-05)]_10_[+4(3.40e-05)]_\ 64 chrX:16966657-16966777 6.68e-01 120 chr3R:30805257-30805377 4.74e-01 120 chr2L:2162798-2162918 5.89e-01 120 chr2L:13056154-13056274 6.97e-01 120 chr2R:19446221-19446341 1.53e-05 93_[+3(2.29e-06)]_9_[+4(6.92e-05)]_\ 2 chr2R:10213683-10213803 9.71e-01 120 chr3R:20286144-20286264 9.34e-01 120 chrX:14897772-14897892 9.74e-01 120 chrX:13226632-13226752 4.74e-01 120 chr3R:14847334-14847454 8.84e-02 120 chr3L:20989004-20989124 6.12e-01 120 chr3R:9159914-9160034 9.89e-01 120 chr3L:18672325-18672445 1.90e-01 120 chrX:9460716-9460836 5.55e-02 120 chr2L:20371531-20371651 9.00e-01 120 chr3L:14463948-14464068 9.94e-01 120 chr2R:10558277-10558397 6.26e-01 120 chrX:14074298-14074418 5.96e-01 120 chr2L:11052519-11052639 5.98e-01 120 chr2R:17514136-17514256 2.48e-02 9_[+2(5.25e-05)]_103 chr2L:20381484-20381604 4.22e-01 120 chrX:19145202-19145322 8.14e-02 120 chr3L:16752559-16752679 6.58e-01 120 chr3R:31329995-31330115 7.39e-01 120 chr3L:2533844-2533964 4.06e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************