******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/ac.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:393118-393238 1.0000 120 chr3R:4602280-4602400 1.0000 120 chr2L:11194789-11194909 1.0000 120 chrX:392381-392501 1.0000 120 chr3L:17496347-17496467 1.0000 120 chr3R:11877257-11877377 1.0000 120 chr3L:13076220-13076340 1.0000 120 chrX:15660701-15660821 1.0000 120 chr3L:13394275-13394395 1.0000 120 chr3L:5859168-5859288 1.0000 120 chr3L:22989589-22989709 1.0000 120 chr3L:10659676-10659796 1.0000 120 chr3L:9421566-9421686 1.0000 120 chr3L:5993067-5993187 1.0000 120 chr2R:20103260-20103380 1.0000 120 chrX:2308546-2308666 1.0000 120 chrX:10116371-10116491 1.0000 120 chr2L:12457816-12457936 1.0000 120 chr2L:18361285-18361405 1.0000 120 chr2R:15699836-15699956 1.0000 120 chr3L:10769049-10769169 1.0000 120 chr3R:21654298-21654418 1.0000 120 chr2R:24277045-24277165 1.0000 120 chrX:17316895-17317015 1.0000 120 chrX:519004-519124 1.0000 120 chrX:687809-687929 1.0000 120 chr2L:5423047-5423167 1.0000 120 chrX:4447703-4447823 1.0000 120 chr2L:4054869-4054989 1.0000 120 chr3R:10355121-10355241 1.0000 120 chr3R:10603232-10603352 1.0000 120 chr2R:15866252-15866372 1.0000 120 chr3L:6832192-6832312 1.0000 120 chrX:369792-369912 1.0000 120 chr3L:47937-48057 1.0000 120 chr2R:6980441-6980561 1.0000 120 chr3L:72311-72431 1.0000 120 chr2L:1886661-1886781 1.0000 120 chr3L:13050922-13051042 1.0000 120 chrX:17746136-17746256 1.0000 120 chr2R:6713573-6713693 1.0000 120 chr2L:19938945-19939065 1.0000 120 chr2R:25204053-25204173 1.0000 120 chr3L:13054068-13054188 1.0000 120 chr2R:9421206-9421326 1.0000 120 chr3R:8687508-8687628 1.0000 120 chr2L:4368047-4368167 1.0000 120 chr2R:20539350-20539470 1.0000 120 chr3R:29559611-29559731 1.0000 120 chr3L:3628108-3628228 1.0000 120 chr2L:10548214-10548334 1.0000 120 chr2L:15475989-15476109 1.0000 120 chr2L:15458540-15458660 1.0000 120 chrX:7573870-7573990 1.0000 120 chr2R:18199566-18199686 1.0000 120 chr2L:9989985-9990105 1.0000 120 chrX:17340886-17341006 1.0000 120 chr3L:6375036-6375156 1.0000 120 chrX:18910297-18910417 1.0000 120 chr3R:29670901-29671021 1.0000 120 chr2R:13188032-13188152 1.0000 120 chrX:11146589-11146709 1.0000 120 chr3L:13392083-13392203 1.0000 120 chr3R:30470241-30470361 1.0000 120 chr3L:13393243-13393363 1.0000 120 chr3L:6813828-6813948 1.0000 120 chr3L:2384598-2384718 1.0000 120 chr2L:21632207-21632327 1.0000 120 chr2L:1518198-1518318 1.0000 120 chr2R:8656222-8656342 1.0000 120 chrX:18310709-18310829 1.0000 120 chr2R:13194933-13195053 1.0000 120 chrX:693198-693318 1.0000 120 chr3R:31697755-31697875 1.0000 120 chr2L:3587975-3588095 1.0000 120 chr2R:16374225-16374345 1.0000 120 chr2R:14429559-14429679 1.0000 120 chrX:369991-370111 1.0000 120 chr3L:22699298-22699418 1.0000 120 chr3R:26010374-26010494 1.0000 120 chrX:12217015-12217135 1.0000 120 chr3R:8171339-8171459 1.0000 120 chr3R:4867752-4867872 1.0000 120 chr3L:2711766-2711886 1.0000 120 chr2L:18920350-18920470 1.0000 120 chr2L:4370125-4370245 1.0000 120 chr4:1090564-1090684 1.0000 120 chr3L:297289-297409 1.0000 120 chr3R:22161765-22161885 1.0000 120 chr3R:19330110-19330230 1.0000 120 chr2R:8245266-8245386 1.0000 120 chr2R:21049057-21049177 1.0000 120 chrX:3862158-3862278 1.0000 120 chr3R:10514394-10514514 1.0000 120 chr2R:23208886-23209006 1.0000 120 chr2L:3835729-3835849 1.0000 120 chr3L:9015371-9015491 1.0000 120 chr3L:13409608-13409728 1.0000 120 chrX:10116573-10116693 1.0000 120 chr3L:22998244-22998364 1.0000 120 chr2L:17264250-17264370 1.0000 120 chrX:457151-457271 1.0000 120 chr3R:8135232-8135352 1.0000 120 chr3L:18225566-18225686 1.0000 120 chr3R:25629575-25629695 1.0000 120 chrX:16427071-16427191 1.0000 120 chrX:399885-400005 1.0000 120 chr2R:25204997-25205117 1.0000 120 chr3R:8704798-8704918 1.0000 120 chr3L:21066740-21066860 1.0000 120 chr2L:21368931-21369051 1.0000 120 chr2R:22681759-22681879 1.0000 120 chr2L:21630720-21630840 1.0000 120 chr2L:393586-393706 1.0000 120 chrX:15674703-15674823 1.0000 120 chr3L:11001540-11001660 1.0000 120 chr3R:6983827-6983947 1.0000 120 chr4:833166-833286 1.0000 120 chr3L:13216204-13216324 1.0000 120 chr2R:24986452-24986572 1.0000 120 chr2R:12776156-12776276 1.0000 120 chrX:18867137-18867257 1.0000 120 chrX:382989-383109 1.0000 120 chr3R:9038175-9038295 1.0000 120 chr2L:712812-712932 1.0000 120 chr3L:4233177-4233297 1.0000 120 chr3L:5860826-5860946 1.0000 120 chrX:19842464-19842584 1.0000 120 chr3L:1358468-1358588 1.0000 120 chr3L:14189507-14189627 1.0000 120 chr3R:22164475-22164595 1.0000 120 chr2L:20934814-20934934 1.0000 120 chr3L:12506152-12506272 1.0000 120 chr2L:8266869-8266989 1.0000 120 chr2R:16807013-16807133 1.0000 120 chr3R:4987705-4987825 1.0000 120 chr3R:6886344-6886464 1.0000 120 chr3L:5856092-5856212 1.0000 120 chr3R:11354609-11354729 1.0000 120 chr2R:22593484-22593604 1.0000 120 chr3R:12113834-12113954 1.0000 120 chr2L:4375133-4375253 1.0000 120 chr2R:13196237-13196357 1.0000 120 chr3L:20926741-20926861 1.0000 120 chr3R:29532392-29532512 1.0000 120 chr3R:16905018-16905138 1.0000 120 chr3L:13259758-13259878 1.0000 120 chrX:18298044-18298164 1.0000 120 chrX:4562117-4562237 1.0000 120 chrX:401561-401681 1.0000 120 chr2L:1448281-1448401 1.0000 120 chr3L:20667528-20667648 1.0000 120 chrX:7096069-7096189 1.0000 120 chr2R:7486432-7486552 1.0000 120 chr2L:21345843-21345963 1.0000 120 chr2R:18672241-18672361 1.0000 120 chrX:19788061-19788181 1.0000 120 chrX:451193-451313 1.0000 120 chr3L:1462567-1462687 1.0000 120 chr2R:11085478-11085598 1.0000 120 chr2L:17564693-17564813 1.0000 120 chr3L:10966812-10966932 1.0000 120 chr3R:25596525-25596645 1.0000 120 chr3R:25999433-25999553 1.0000 120 chr3L:13105873-13105993 1.0000 120 chr3L:18138375-18138495 1.0000 120 chr3R:21534749-21534869 1.0000 120 chr2L:16477717-16477837 1.0000 120 chrX:7574071-7574191 1.0000 120 chr2L:20972020-20972140 1.0000 120 chr3R:29073139-29073259 1.0000 120 chr3R:5761055-5761175 1.0000 120 chr3L:3848594-3848714 1.0000 120 chr2L:17263440-17263560 1.0000 120 chr3L:16473215-16473335 1.0000 120 chr2L:17222236-17222356 1.0000 120 chr2L:17296351-17296471 1.0000 120 chr3R:19345340-19345460 1.0000 120 chr3R:4866206-4866326 1.0000 120 chr2L:9988348-9988468 1.0000 120 chr3L:21455317-21455437 1.0000 120 chrX:4584213-4584333 1.0000 120 chr2L:7049878-7049998 1.0000 120 chr2R:9490943-9491063 1.0000 120 chr2L:14579624-14579744 1.0000 120 chr3R:8326903-8327023 1.0000 120 chr3R:4350478-4350598 1.0000 120 chr2L:15741622-15741742 1.0000 120 chr3L:16012995-16013115 1.0000 120 chr2L:8282012-8282132 1.0000 120 chrX:19432234-19432354 1.0000 120 chr2R:15910337-15910457 1.0000 120 chr2L:5870974-5871094 1.0000 120 chr3R:22633077-22633197 1.0000 120 chr2R:11794202-11794322 1.0000 120 chr3R:17816515-17816635 1.0000 120 chr2R:9714729-9714849 1.0000 120 chrX:8039185-8039305 1.0000 120 chr2L:7526035-7526155 1.0000 120 chr2L:1410915-1411035 1.0000 120 chr3L:4992285-4992405 1.0000 120 chr3L:15665851-15665971 1.0000 120 chr2L:7308976-7309096 1.0000 120 chr2L:8548277-8548397 1.0000 120 chr2R:19267321-19267441 1.0000 120 chr2L:21865578-21865698 1.0000 120 chr3L:13135039-13135159 1.0000 120 chr3R:19353140-19353260 1.0000 120 chr2R:20604149-20604269 1.0000 120 chrX:20753262-20753382 1.0000 120 chr2R:25198609-25198729 1.0000 120 chr3L:22162645-22162765 1.0000 120 chr3R:5125105-5125225 1.0000 120 chr3L:7371608-7371728 1.0000 120 chr2L:8847504-8847624 1.0000 120 chr2R:13195137-13195257 1.0000 120 chr2L:3577605-3577725 1.0000 120 chr2L:1447456-1447576 1.0000 120 chr2L:6462541-6462661 1.0000 120 chr2R:15886489-15886609 1.0000 120 chr3R:5056217-5056337 1.0000 120 chr2L:11419048-11419168 1.0000 120 chr2R:13570135-13570255 1.0000 120 chr3R:29547605-29547725 1.0000 120 chr3R:4847575-4847695 1.0000 120 chr2L:20995913-20996033 1.0000 120 chr2R:11742396-11742516 1.0000 120 chr3R:16187972-16188092 1.0000 120 chr3R:13724442-13724562 1.0000 120 chr2R:15132391-15132511 1.0000 120 chr3L:12676910-12677030 1.0000 120 chr2R:11812316-11812436 1.0000 120 chrX:8294756-8294876 1.0000 120 chr2R:20311655-20311775 1.0000 120 chr3L:2867926-2868046 1.0000 120 chr2R:14433302-14433422 1.0000 120 chr2L:21105245-21105365 1.0000 120 chr3R:21640474-21640594 1.0000 120 chrX:9729720-9729840 1.0000 120 chr3R:4875351-4875471 1.0000 120 chr3L:16049199-16049319 1.0000 120 chr3R:26024699-26024819 1.0000 120 chr2R:25044872-25044992 1.0000 120 chr3L:3882169-3882289 1.0000 120 chr2R:6515914-6516034 1.0000 120 chr2L:11470162-11470282 1.0000 120 chr3R:24604207-24604327 1.0000 120 chr2L:16643556-16643676 1.0000 120 chr3R:25636781-25636901 1.0000 120 chr3R:26018493-26018613 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_ac/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/ac.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.256 C 0.24 G 0.238 T 0.266 Background letter frequencies (from file dataset with add-one prior applied): A 0.256 C 0.24 G 0.238 T 0.265 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCAGCTGC MEME-1 width = 8 sites = 193 llr = 1450 E-value = 6.5e-153 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3:a::::1 pos.-specific C 1a:28::5 probability G 6::82:a1 matrix T 1::::a:2 bits 2.1 * * 1.9 * ** 1.7 ** ** 1.4 ** ** Relative 1.2 ****** Entropy 1.0 ****** (10.8 bits) 0.8 ****** 0.6 ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCTGC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:11470162-11470282 92 1.26e-05 CGTTGCAGTT GCAGCTGC AGCCGCCTGC chr3L:16049199-16049319 46 1.26e-05 ACGTGTGCCG GCAGCTGC AGCAACTAGG chr2R:14433302-14433422 92 1.26e-05 GACAGCAACG GCAGCTGC TCCaaaaaca chr2R:15132391-15132511 76 1.26e-05 CTGGCAAATG GCAGCTGC AACCTGCAGC chr2L:8847504-8847624 35 1.26e-05 TTAGAACCAA GCAGCTGC ATTCACCACC chrX:19432234-19432354 93 1.26e-05 tgttgcattt gcagctgc agctgtcgca chr2L:7049878-7049998 48 1.26e-05 GTCGACGTCC GCAGCTGC CATTTGAGTG chr3R:25596525-25596645 1 1.26e-05 . GCAGCTGC TAGCTGGCGC chr3L:10966812-10966932 97 1.26e-05 GTCACCACAG GCAGCTGC GGCTCATTGA chrX:451193-451313 50 1.26e-05 AGGAAAAGGA GCAGCTGC CTCGATCGAG chr2R:18672241-18672361 38 1.26e-05 GTTCAGTCCT GCAGCTGC AAAGATTACC chrX:7096069-7096189 40 1.26e-05 GGAAATAAAT GCAGCTGC cctctcctca chr2R:16807013-16807133 112 1.26e-05 TTGCCCAGAA GCAGCTGC A chr3R:22164475-22164595 55 1.26e-05 TGGCCAAGGG GCAGCTGC CCCTCGGATG chrX:16427071-16427191 83 1.26e-05 AATCGCATCT GCAGCTGC CACAAGTCTT chr3R:25629575-25629695 3 1.26e-05 CT GCAGCTGC TGGCAAGTCA chr3L:22998244-22998364 6 1.26e-05 CACCA GCAGCTGC AAGGAAGCCG chr2L:3835729-3835849 48 1.26e-05 GCGAATGCCA GCAGCTGC TATTTCACTT chr2R:23208886-23209006 44 1.26e-05 TCCCCAAAGC GCAGCTGC CAGCTCATAA chrX:3862158-3862278 41 1.26e-05 GCCACGAAGT GCAGCTGC CACAGGCACG chr2L:4370125-4370245 39 1.26e-05 TCAGCCAAAT GCAGCTGC CTTTAGCCAT chr2L:21632207-21632327 75 1.26e-05 CTGTCAAATA GCAGCTGC ACTCATTTTA chr2L:10548214-10548334 90 1.26e-05 CTGATCCCGG GCAGCTGC ACGCCGCATA chr2R:20539350-20539470 71 1.26e-05 TATCCCGAGA GCAGCTGC ACAAGGTGAT chrX:17746136-17746256 105 1.26e-05 CATTTCAGCA GCAGCTGC TCCTTTTC chr3L:47937-48057 47 1.26e-05 GGAACAGGCT GCAGCTGC CATCTGATCC chr2R:15866252-15866372 21 1.26e-05 CTGCTTAACG GCAGCTGC AAAAATTCAA chr3R:10603232-10603352 61 1.26e-05 ATGCAAATGA gcagctgc ttttcccatc chr2R:15699836-15699956 92 1.26e-05 AGGGGCGCAA GCAGCTGC ATTTTCTTTG chr3L:10659676-10659796 93 1.26e-05 TACCCAAAAG GCAGCTGC AAAagttgct chr2R:25198609-25198729 36 2.62e-05 TTTTTTAGAA ACAGCTGC CATGCGACTG chr2R:20604149-20604269 46 2.62e-05 AGCAGAGCAA ACAGCTGC CCCGAATCCT chr3R:29073139-29073259 79 2.62e-05 TGTCTGCTGG ACAGCTGC AAAAACTGCA chr3R:9038175-9038295 48 2.62e-05 TTTATTGTCC ACAGCTGC ATGGGCATCT chr2R:8245266-8245386 79 2.62e-05 TCTGCTTCGA ACAGCTGC TCTTCCTTTT chr3R:19330110-19330230 61 2.62e-05 GAGCTCGAAA ACAGCTGC TTTTCAATCT chr3L:22699298-22699418 68 2.62e-05 AAAAAACGGA ACAGCTGC TCCCTATCTG chr2R:14429559-14429679 36 2.62e-05 CGCATGCGCG ACAGCTGC GCCGAGAAAT chr2L:1518198-1518318 102 2.62e-05 ACCTGCCGGG ACAGCTGC AAGAGATGTT chr2R:13188032-13188152 57 2.62e-05 CGCTGAGGGA ACAGCTGC AACTTTTCGA chrX:369792-369912 41 2.62e-05 CAGGTCACCA ACAGCTGC GTTTTACAGA chrX:687809-687929 26 2.62e-05 TGCTACTGCG ACAGCTGC TTTTTTTGTT chr3L:5859168-5859288 66 2.62e-05 GCCAGAGAAA ACAGCTGC CACCAAACAA chr3R:26018493-26018613 63 4.02e-05 TTTCGGCTGA GCAGCTGT TATTGCTACT chr3R:21640474-21640594 57 4.02e-05 AGAATAGTTT GCAGCTGT CGCTCTACGG chr3R:16187972-16188092 73 4.02e-05 TGATCCTGCA GCAGCTGT TTTTGCCACA chr3R:22633077-22633197 68 4.02e-05 CAGCAACAAC GCAGCTGT TTGCACGCCG chr2L:16477717-16477837 69 4.02e-05 GAACCAGTTT GCAGCTGT CTCCTTGCGT chr3L:18138375-18138495 49 4.02e-05 CACTCAATTT GCAGCTGT CCTGGCCATT chr3R:25999433-25999553 43 4.02e-05 TCTAGAAACG GCAGCTGT TCGCTCTGCA chr2R:7486432-7486552 96 4.02e-05 CCCGAGAAAG GCAGCTGT GTGCCGCGCG chr2R:22593484-22593604 41 4.02e-05 TCAGTGCCAT GCAGCTGT TTCCGATTCT chr3L:5860826-5860946 100 4.02e-05 TATTGAAATT GCAGCTGT TGGCTACTGG chr2R:21049057-21049177 72 4.02e-05 TCGTACAATT GCAGCTGT GGGGGGAATC chr3R:29559611-29559731 23 4.02e-05 gtatcatttG GCAGCTGT TTTTTTATTT chrX:2308546-2308666 56 4.02e-05 ACTCACATGT GCAGCTGT TCATCGAGTC chr3L:17496347-17496467 76 4.02e-05 CCAGGTGAGt gcagctgt cagctgttgc chr2R:9714729-9714849 110 6.64e-05 CGGAAATGCA GCAGCTGA CTT chr2L:5870974-5871094 14 6.64e-05 AGCTGAGCCG GCAGCTGA CTTGCAGTCC chr2R:15910337-15910457 37 6.64e-05 GCGTGCACCT GCACCTGC GCGATAAGAT chr3L:16012995-16013115 33 6.64e-05 TTGACTTGGT GCACctgc tgctggcgga chr3L:16473215-16473335 58 6.64e-05 TCTTCGGCTT GCACCTGC TGCTACCTGA chr3L:13105873-13105993 37 6.64e-05 TCCCTGGGAT GCAGCTGA AATCTCGCCG chr2L:21345843-21345963 56 6.64e-05 CACTTTTTAC GCAGCTGA CACTATTTCT chr3R:11354609-11354729 96 6.64e-05 GATTGCAACT GCAGCTGA CTTCGAATGT chr3L:5856092-5856212 50 6.64e-05 GCCGGCATAA GCAGCTGA CCGAAGTGAA chr3L:4233177-4233297 68 6.64e-05 TCCATTAGTA GCACCTGC ATTTTTAAGG chrX:382989-383109 41 6.64e-05 ATGTCAGCGA GCAGCTGA CGTTCTGCCG chr3R:8135232-8135352 61 6.64e-05 GCAGGGAATT GCACCTGC CTGGATAACC chr3L:13409608-13409728 107 6.64e-05 CTGCTGGTGT GCACCTGC TTTTCG chr2L:3587975-3588095 87 6.64e-05 TTCAGCTGCA GCAGCTGA AAAATAGGTA chr3L:72311-72431 45 6.64e-05 GTGTAGTTTT GCACCTGC TCCACCGTAA chr2R:6980441-6980561 45 6.64e-05 TTTGTCCGAC GCAGCTGA CTGAATGCAA chrX:519004-519124 47 6.64e-05 tgctgctgct gcacctgc aggattgcct chr2L:18361285-18361405 27 6.64e-05 AGCTGAGCCA GCAGCTGA GTTTTTCCTG chr2L:12457816-12457936 5 6.64e-05 tgct gcacctgc tgctccaccg chr3L:13076220-13076340 34 6.64e-05 TCGGCGGAAT GCACCTGC ACACGTCAGA chr2L:1448281-1448401 2 7.90e-05 A GCAGGTGC TCCTGGCATC chr2L:4375133-4375253 34 7.90e-05 TTGCCATATT GCAGGTGC AGAGGGAGCA chr3L:12506152-12506272 77 7.90e-05 TGCATCTGCC GCAGGTGC GACTCCAGCA chr2L:18920350-18920470 84 7.90e-05 TTGCACTCTG GCAGGTGC GACTTCAGAA chr2R:18199566-18199686 63 7.90e-05 GTGCCTTGTG GCAGGTGC CGCATATTTT chrX:7573870-7573990 46 7.90e-05 ACTAAAACTT GCAGGTGC ATCAACCTTC chr3L:22989589-22989709 3 7.90e-05 AG GCAGGTGC AACTAACTTC chr3R:11877257-11877377 39 7.90e-05 ACAGCCGAGA GCAGGTGC AGGTGGTTAC chr2R:12776156-12776276 32 9.40e-05 GCCCGCAACG ACAGCTGT GAAGTCACAA chrX:15674703-15674823 84 9.40e-05 GGCGATGAGA ACAGCTGT CCAACTATGC chrX:10116371-10116491 73 9.40e-05 ATCCGGAACA ACAGCTGT TTCTCGGCTA chr2R:6515914-6516034 106 1.07e-04 AAAGACACCG CCAGCTGC TGCAGCT chr3R:29547605-29547725 53 1.07e-04 TTGGCTGGTT CCAGCTGC CAGCTAGCGA chr2R:9490943-9491063 69 1.07e-04 AAGGAAACCT CCAGCTGC TTGGGTCATC chr3L:3848594-3848714 36 1.07e-04 TTTTGCAAAA CCAGCTGC CTGGCCAGCG chrX:18298044-18298164 87 1.07e-04 ATTGTCACTG CCAGCTGC ATGTTCCTGG chrX:18867137-18867257 34 1.07e-04 AGTGGCGAAG CCAGCTGC ATTTTCATGC chr2R:24277045-24277165 82 1.07e-04 AAGTGTGAGG CCAGCTGC CTTTTGGCCT chr3R:5056217-5056337 97 1.33e-04 GTGTGTGCCT GCAGCTGG AAATAAAAAC chr2L:8282012-8282132 52 1.33e-04 GACCATAATT TCAGCTGC CTCCGGCGGT chr3R:4866206-4866326 95 1.33e-04 CGGCACCGAG TCAGCTGC CTGTCCCATT chr3R:6886344-6886464 28 1.33e-04 TTGACCTCAT GCAGCTGG GAAATCGTTG chr2R:24986452-24986572 68 1.33e-04 cgctccagct gcagctGG AATTAAAACA chr3L:21066740-21066860 93 1.33e-04 CACGCCAGGT GCAGCTGG AAAACTGGCG chr3R:29670901-29671021 5 1.33e-04 ATCG GCAGCTGG GTTCTCACGT chr2L:9989985-9990105 45 1.33e-04 CATTCGAGGA GCAGCTGG AAAAAAAAAG chr2L:15458540-15458660 67 1.33e-04 CAGAATGCAG GCAgctgg ctcgcaggca chr3L:13054068-13054188 39 1.33e-04 ACACACACTT GCAGCTGG AGAAACCACA chr2R:6713573-6713693 47 1.33e-04 ACCGGTTTTG TCAGCTGC TACATACAGA chr3R:4602280-4602400 71 1.33e-04 CCTGGATTTC TCAGCTGC TCCTGGGGCG chrX:393118-393238 36 1.33e-04 CGGTTATTTT TCAGCTGC ACCAGAAAAA chr2L:16643556-16643676 65 1.62e-04 CCGGAACTCA ACAGCTGA GCAAACATTT chr2L:1410915-1411035 92 1.62e-04 CGGCCAAATG ACACCTGC ATCCATGGCT chr3R:4350478-4350598 46 1.62e-04 GGCTCACGCG ACAGCTGA GTGGTGCACC chr2L:17564693-17564813 20 1.62e-04 GACACTTTCC ACAGCTGA TTGCATGCAA chr2L:8266869-8266989 66 1.62e-04 TGATGTCTGA ACACCTGC ACAGGTGTTT chr3L:14189507-14189627 95 1.62e-04 TGCCAATGCA ACAGCTGA ACTTGAGCTC chr2L:712812-712932 37 1.62e-04 GAACAGACGA ACACCTGC CGCCCAGAGA chr3L:13216204-13216324 95 1.62e-04 AGGGCCAAAA ACACCTGC CTCGCACCTC chrX:10116573-10116693 54 1.62e-04 TTCAAATTTT ACACCTGC AGAGATATAG chr3L:297289-297409 59 1.62e-04 GGGACGGAGC ACAGCTGA AGAGCTGACA chr3R:8171339-8171459 64 1.62e-04 CGGCGCTGTT ACACCTGC TCCAAAATTG chr3R:26010374-26010494 55 1.62e-04 TTACCAAGGA ACACCTGC CCCGTATCGG chrX:18910297-18910417 22 1.62e-04 CTGCCTGGAA ACACCTGC AGAGGCATTT chr2R:25204053-25204173 30 1.62e-04 TGGAGCAGTT ACACCTGC TTGATGTTTG chr4:833166-833286 13 1.89e-04 GCGTGGCAAT GCACCTGT CGCGACCAAT chr3R:30470241-30470361 6 1.89e-04 AGGAA ACAGGTGC ATATGCCGTT chr2L:1886661-1886781 74 1.89e-04 TTACCTGGCG ACAGGTGC GCATTGAGTG chrX:4447703-4447823 61 1.89e-04 CGAGAGCGGC ACAGGTGC GTTATTAGAC chr2L:5423047-5423167 24 1.89e-04 TTAGCCAAAG GCACCTGT CGTCCACCGG chr3L:9421566-9421686 40 1.89e-04 ACGGTAAACG ACAGGTGC CGCAGCCGCT chrX:15660701-15660821 61 1.89e-04 GCAAACACTT GCACCTGT AGGTGCCTCG chr3R:26024699-26024819 34 2.03e-04 AACAAAAACG GCAGGTGT GTTTTTCGAA chr3L:2384598-2384718 106 2.03e-04 CCACAGGTCA GCAGGTGT TTGAGTT chr3L:6813828-6813948 75 2.03e-04 GCAACACGAT GCAGGTGT CTCTCTCACG chr2L:4368047-4368167 109 2.03e-04 AGGGAGCGTG GCAGGTGT CTGC chrX:17316895-17317015 82 2.03e-04 CGAGTCTGAG GCAGGTGT CTTAGGTTTT chr3R:21654298-21654418 32 2.03e-04 AAGAGCCTGA GCAGGTGT GTATCTGTAT chr2R:11742396-11742516 39 2.31e-04 TGCAGGAAAA ACAGCTGG TGCTATATGT chr3R:29532392-29532512 99 2.31e-04 AAGACGTTTG CCAGCTGT AAATTTCGGG chrX:11146589-11146709 75 2.31e-04 AGGACGGCGA CCAGCTGT TCGGCGAGGA chrX:17340886-17341006 18 2.31e-04 AAGTCCGCTG ACAGCTGG TAGCACTTCT chr2L:4054869-4054989 14 2.60e-04 ACTTCTTTTC TCAGCTGT CCCAAAACTG chr3L:10769049-10769169 26 2.60e-04 TCCGGGGACT TCAGCTGT TGATTCTGGC chr3R:4875351-4875471 13 2.99e-04 TCAGGCATTA GCAGGTGA AATACGTTGA chr2R:8656222-8656342 1 2.99e-04 . GCAGGTGA ACTTAGCTTC chr3L:13393243-13393363 33 2.99e-04 GCACACTCAG GCAGGTGA CAATGCTCAA chr3L:5993067-5993187 29 2.99e-04 CATTGTGTGT GCAGGTGA AACTGTGCTG chr2R:22681759-22681879 57 3.14e-04 GGATTCAAGG ACACCTGT TTCCACATTC chr3L:2867926-2868046 65 3.56e-04 GGCATTTGTT GCTGCTGC TGTTGTTGTT chr2L:20995913-20996033 5 3.56e-04 AGCT GCAACTGC TGAACTCTGA chr2L:7308976-7309096 4 3.56e-04 CCG ACAGGTGT CTGCAAATAT chrX:8039185-8039305 57 3.56e-04 ATCGGTGAAT GCAACTGC AGGGCACACA chrX:4584213-4584333 57 3.56e-04 TGCAGGGGTT GCTGCTGC TATGCACCAA chrX:19842464-19842584 65 3.56e-04 TTTTTTCGGG GCAACTGC TGCTACGCAT chr3L:11001540-11001660 77 3.56e-04 GACCAGTTTG ACAGGTGT TTTCTTGCCG chrX:18310709-18310829 58 3.56e-04 GCAGCGTGCA GCAACTGC TGCAGGAAGC chr2L:17222236-17222356 101 3.82e-04 TCGGGCACAT CCAGCTGA GGAAAGCGGG chr3L:20926741-20926861 26 3.82e-04 AAACTTGCCA CCACCTGC TATGGGTAGC chr3L:13050922-13051042 4 3.82e-04 ATT CCACCTGC AGTCGCATCG chr2L:11194789-11194909 49 3.82e-04 AGCCCATTTT CCACCTGC GCCGGTGGTC chr2L:9988348-9988468 35 4.37e-04 atatgcacaa tcacctgc aGGAAAAAGG chrX:399885-400005 77 4.37e-04 ACCTAAAATT TCACCTGC CGGGTCAATA chr3L:13394275-13394395 57 4.37e-04 GCTCTTGACT TCACCTGC AACACAACTG chr2L:15741622-15741742 27 4.63e-04 TGTACCGATG TCAGGTGC ATCGCATTCG chr2R:25044872-25044992 81 5.20e-04 ACGCATACAA ACAGGTGA TCAAAACAAA chr3R:13724442-13724562 79 5.20e-04 AGCCGGTTGG ACAGGTGA ACCCGTAGCG chr3R:4987705-4987825 43 5.20e-04 TGAGCGACAG ACAGGTGA TATTTATGCA chr4:1090564-1090684 101 5.20e-04 TCAATTAACA ACAGGTGA ATAAGTGCTA chr2L:17263440-17263560 72 5.62e-04 GGTCAGGAAG CCAGCTGG TTCCATGGTC chr2R:13196237-13196357 71 5.62e-04 AGACAGGACG GCAGATGT TCCTCTTCGC chrX:457151-457271 57 5.62e-04 TGCAGCAGGA GCAGATGT TTTTCGCGGC chr3L:2711766-2711886 86 5.62e-04 CTGCCAGCCA CCAGCTGG CCCAGCATTA chr3R:8687508-8687628 36 5.62e-04 GCCATCAGGG GCAGATGT TTTTTTCCAT chrX:392381-392501 50 5.62e-04 CCACCGAAGA GCAGATGT TTTTATGTTG chr3R:4847575-4847695 65 6.05e-04 TTCGGCCAAG TCAGCTGG CGGTCCTCGA chr2R:19267321-19267441 95 6.05e-04 TTGCCCCAAA ACTGCTGC GACAAGTGAT chr2L:17296351-17296471 94 6.05e-04 gccgaacaag acaactgc aaacaaacaC chr3L:6375036-6375156 20 6.34e-04 TTTTTAAGGA GCTGCTGT CACCTGGTGG chr2L:21865578-21865698 80 6.62e-04 CACCTGGATT CCACCTGT TCGGAAAACT chr3R:31697755-31697875 21 6.62e-04 GTTGACACAA ACACCTGG CTAGTGGCTA chr3L:13135039-13135159 77 7.05e-04 TGCAGTGTTT TCACCTGT CAACAATATT chr2R:25204997-25205117 29 7.05e-04 GCGACCACTT TCACCTGT CCTTACAAGC chr3L:18225566-18225686 47 7.05e-04 CTGACAAGTT TCACCTGT CTGCATTTGT chr2L:21105245-21105365 29 8.34e-04 AAGTCGGCAA ACAGATGT TTTTGCTGCT chr2R:13570135-13570255 83 8.34e-04 CACGATCGGG ACAGATGT ATAGATTGCA chrX:4562117-4562237 33 8.34e-04 GATTGCCGGG ACAGATGT TTTGGCTGAT chr3R:6983827-6983947 100 8.34e-04 CAAACGGAAT GCTGCTGA AGTCAACCCG chr2R:13194933-13195053 42 8.34e-04 TTCAGAACCG ACAGATGT CTGTCGATGT chr2L:11419048-11419168 69 8.75e-04 TGGTGGTACA GCAAGTGC ATGTGTGTGT chrX:7574071-7574191 103 1.03e-03 TTCAGTCTTA GCACGTGG CTACTGGTGG chr3R:24604207-24604327 12 1.07e-03 CTGCAAGAAG GCAGCCGC CGTTGAAACT chr3R:8326903-8327023 45 1.20e-03 tccgatctga GCAGCTTC TGTTAATGAA chrX:693198-693318 72 1.20e-03 CTTTCTCCAT GGAGCTGC ATTAAAAAAT chr2R:11085478-11085598 14 1.30e-03 GCCGGCTTTC ACTGCTGA CGCCGCTTGG chr3L:20667528-20667648 113 1.38e-03 ACTGGACTTT GCTGGTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:11470162-11470282 1.3e-05 91_[+1]_21 chr3L:16049199-16049319 1.3e-05 45_[+1]_67 chr2R:14433302-14433422 1.3e-05 91_[+1]_21 chr2R:15132391-15132511 1.3e-05 75_[+1]_37 chr2L:8847504-8847624 1.3e-05 34_[+1]_78 chrX:19432234-19432354 1.3e-05 92_[+1]_20 chr2L:7049878-7049998 1.3e-05 47_[+1]_65 chr3R:25596525-25596645 1.3e-05 [+1]_112 chr3L:10966812-10966932 1.3e-05 96_[+1]_16 chrX:451193-451313 1.3e-05 49_[+1]_63 chr2R:18672241-18672361 1.3e-05 37_[+1]_75 chrX:7096069-7096189 1.3e-05 39_[+1]_73 chr2R:16807013-16807133 1.3e-05 111_[+1]_1 chr3R:22164475-22164595 1.3e-05 54_[+1]_58 chrX:16427071-16427191 1.3e-05 82_[+1]_30 chr3R:25629575-25629695 1.3e-05 2_[+1]_110 chr3L:22998244-22998364 1.3e-05 5_[+1]_107 chr2L:3835729-3835849 1.3e-05 47_[+1]_65 chr2R:23208886-23209006 1.3e-05 43_[+1]_69 chrX:3862158-3862278 1.3e-05 40_[+1]_72 chr2L:4370125-4370245 1.3e-05 38_[+1]_74 chr2L:21632207-21632327 1.3e-05 74_[+1]_38 chr2L:10548214-10548334 1.3e-05 89_[+1]_23 chr2R:20539350-20539470 1.3e-05 70_[+1]_42 chrX:17746136-17746256 1.3e-05 104_[+1]_8 chr3L:47937-48057 1.3e-05 46_[+1]_66 chr2R:15866252-15866372 1.3e-05 20_[+1]_92 chr3R:10603232-10603352 1.3e-05 60_[+1]_52 chr2R:15699836-15699956 1.3e-05 91_[+1]_21 chr3L:10659676-10659796 1.3e-05 92_[+1]_20 chr2R:25198609-25198729 2.6e-05 35_[+1]_77 chr2R:20604149-20604269 2.6e-05 45_[+1]_67 chr3R:29073139-29073259 2.6e-05 78_[+1]_34 chr3R:9038175-9038295 2.6e-05 47_[+1]_65 chr2R:8245266-8245386 2.6e-05 78_[+1]_34 chr3R:19330110-19330230 2.6e-05 60_[+1]_52 chr3L:22699298-22699418 2.6e-05 67_[+1]_45 chr2R:14429559-14429679 2.6e-05 35_[+1]_77 chr2L:1518198-1518318 2.6e-05 101_[+1]_11 chr2R:13188032-13188152 2.6e-05 56_[+1]_56 chrX:369792-369912 2.6e-05 40_[+1]_72 chrX:687809-687929 2.6e-05 25_[+1]_87 chr3L:5859168-5859288 2.6e-05 65_[+1]_47 chr3R:26018493-26018613 4e-05 62_[+1]_50 chr3R:21640474-21640594 4e-05 56_[+1]_56 chr3R:16187972-16188092 4e-05 72_[+1]_40 chr3R:22633077-22633197 4e-05 67_[+1]_45 chr2L:16477717-16477837 4e-05 68_[+1]_44 chr3L:18138375-18138495 4e-05 48_[+1]_64 chr3R:25999433-25999553 4e-05 42_[+1]_70 chr2R:7486432-7486552 4e-05 95_[+1]_17 chr2R:22593484-22593604 4e-05 40_[+1]_72 chr3L:5860826-5860946 4e-05 99_[+1]_13 chr2R:21049057-21049177 4e-05 71_[+1]_41 chr3R:29559611-29559731 4e-05 22_[+1]_90 chrX:2308546-2308666 4e-05 55_[+1]_57 chr3L:17496347-17496467 4e-05 75_[+1]_37 chr2R:9714729-9714849 6.6e-05 109_[+1]_3 chr2L:5870974-5871094 6.6e-05 13_[+1]_99 chr2R:15910337-15910457 6.6e-05 36_[+1]_76 chr3L:16012995-16013115 6.6e-05 32_[+1]_80 chr3L:16473215-16473335 6.6e-05 57_[+1]_55 chr3L:13105873-13105993 6.6e-05 36_[+1]_76 chr2L:21345843-21345963 6.6e-05 55_[+1]_57 chr3R:11354609-11354729 6.6e-05 95_[+1]_17 chr3L:5856092-5856212 6.6e-05 49_[+1]_63 chr3L:4233177-4233297 6.6e-05 67_[+1]_45 chrX:382989-383109 6.6e-05 40_[+1]_72 chr3R:8135232-8135352 6.6e-05 60_[+1]_52 chr3L:13409608-13409728 6.6e-05 106_[+1]_6 chr2L:3587975-3588095 6.6e-05 86_[+1]_26 chr3L:72311-72431 6.6e-05 44_[+1]_68 chr2R:6980441-6980561 6.6e-05 44_[+1]_68 chrX:519004-519124 6.6e-05 46_[+1]_66 chr2L:18361285-18361405 6.6e-05 26_[+1]_86 chr2L:12457816-12457936 6.6e-05 4_[+1]_108 chr3L:13076220-13076340 6.6e-05 33_[+1]_79 chr2L:1448281-1448401 7.9e-05 1_[+1]_111 chr2L:4375133-4375253 7.9e-05 33_[+1]_79 chr3L:12506152-12506272 7.9e-05 76_[+1]_36 chr2L:18920350-18920470 7.9e-05 83_[+1]_29 chr2R:18199566-18199686 7.9e-05 62_[+1]_50 chrX:7573870-7573990 7.9e-05 45_[+1]_67 chr3L:22989589-22989709 7.9e-05 2_[+1]_110 chr3R:11877257-11877377 7.9e-05 38_[+1]_74 chr2R:12776156-12776276 9.4e-05 31_[+1]_81 chrX:15674703-15674823 9.4e-05 83_[+1]_29 chrX:10116371-10116491 9.4e-05 72_[+1]_40 chr2R:6515914-6516034 0.00011 105_[+1]_7 chr3R:29547605-29547725 0.00011 52_[+1]_60 chr2R:9490943-9491063 0.00011 68_[+1]_44 chr3L:3848594-3848714 0.00011 35_[+1]_77 chrX:18298044-18298164 0.00011 86_[+1]_26 chrX:18867137-18867257 0.00011 33_[+1]_79 chr2R:24277045-24277165 0.00011 81_[+1]_31 chr3R:5056217-5056337 0.00013 96_[+1]_16 chr2L:8282012-8282132 0.00013 51_[+1]_61 chr3R:4866206-4866326 0.00013 94_[+1]_18 chr3R:6886344-6886464 0.00013 27_[+1]_85 chr2R:24986452-24986572 0.00013 67_[+1]_45 chr3L:21066740-21066860 0.00013 92_[+1]_20 chr3R:29670901-29671021 0.00013 4_[+1]_108 chr2L:9989985-9990105 0.00013 44_[+1]_68 chr2L:15458540-15458660 0.00013 66_[+1]_46 chr3L:13054068-13054188 0.00013 38_[+1]_74 chr2R:6713573-6713693 0.00013 46_[+1]_66 chr3R:4602280-4602400 0.00013 70_[+1]_42 chrX:393118-393238 0.00013 35_[+1]_77 chr2L:16643556-16643676 0.00016 64_[+1]_48 chr2L:1410915-1411035 0.00016 91_[+1]_21 chr3R:4350478-4350598 0.00016 45_[+1]_67 chr2L:17564693-17564813 0.00016 19_[+1]_93 chr2L:8266869-8266989 0.00016 65_[+1]_47 chr3L:14189507-14189627 0.00016 94_[+1]_18 chr2L:712812-712932 0.00016 36_[+1]_76 chr3L:13216204-13216324 0.00016 94_[+1]_18 chrX:10116573-10116693 0.00016 53_[+1]_59 chr3L:297289-297409 0.00016 58_[+1]_54 chr3R:8171339-8171459 0.00016 63_[+1]_49 chr3R:26010374-26010494 0.00016 54_[+1]_58 chrX:18910297-18910417 0.00016 21_[+1]_91 chr2R:25204053-25204173 0.00016 29_[+1]_83 chr4:833166-833286 0.00019 12_[+1]_100 chr3R:30470241-30470361 0.00019 5_[+1]_107 chr2L:1886661-1886781 0.00019 73_[+1]_39 chrX:4447703-4447823 0.00019 60_[+1]_52 chr2L:5423047-5423167 0.00019 23_[+1]_89 chr3L:9421566-9421686 0.00019 39_[+1]_73 chrX:15660701-15660821 0.00019 60_[+1]_52 chr3R:26024699-26024819 0.0002 33_[+1]_79 chr3L:2384598-2384718 0.0002 105_[+1]_7 chr3L:6813828-6813948 0.0002 74_[+1]_38 chr2L:4368047-4368167 0.0002 108_[+1]_4 chrX:17316895-17317015 0.0002 81_[+1]_31 chr3R:21654298-21654418 0.0002 31_[+1]_81 chr2R:11742396-11742516 0.00023 38_[+1]_74 chr3R:29532392-29532512 0.00023 98_[+1]_14 chrX:11146589-11146709 0.00023 74_[+1]_38 chrX:17340886-17341006 0.00023 17_[+1]_95 chr2L:4054869-4054989 0.00026 13_[+1]_99 chr3L:10769049-10769169 0.00026 25_[+1]_87 chr3R:4875351-4875471 0.0003 12_[+1]_100 chr2R:8656222-8656342 0.0003 [+1]_112 chr3L:13393243-13393363 0.0003 32_[+1]_80 chr3L:5993067-5993187 0.0003 28_[+1]_84 chr2R:22681759-22681879 0.00031 56_[+1]_56 chr3L:2867926-2868046 0.00036 64_[+1]_48 chr2L:20995913-20996033 0.00036 4_[+1]_108 chr2L:7308976-7309096 0.00036 3_[+1]_109 chrX:8039185-8039305 0.00036 56_[+1]_56 chrX:4584213-4584333 0.00036 56_[+1]_56 chrX:19842464-19842584 0.00036 64_[+1]_48 chr3L:11001540-11001660 0.00036 76_[+1]_36 chrX:18310709-18310829 0.00036 57_[+1]_55 chr2L:17222236-17222356 0.00038 100_[+1]_12 chr3L:20926741-20926861 0.00038 25_[+1]_87 chr3L:13050922-13051042 0.00038 3_[+1]_109 chr2L:11194789-11194909 0.00038 48_[+1]_64 chr2L:9988348-9988468 0.00044 34_[+1]_78 chrX:399885-400005 0.00044 76_[+1]_36 chr3L:13394275-13394395 0.00044 56_[+1]_56 chr2L:15741622-15741742 0.00046 26_[+1]_86 chr2R:25044872-25044992 0.00052 80_[+1]_32 chr3R:13724442-13724562 0.00052 78_[+1]_34 chr3R:4987705-4987825 0.00052 42_[+1]_70 chr4:1090564-1090684 0.00052 100_[+1]_12 chr2L:17263440-17263560 0.00056 71_[+1]_41 chr2R:13196237-13196357 0.00056 70_[+1]_42 chrX:457151-457271 0.00056 56_[+1]_56 chr3L:2711766-2711886 0.00056 85_[+1]_27 chr3R:8687508-8687628 0.00056 35_[+1]_77 chrX:392381-392501 0.00056 49_[+1]_63 chr3R:4847575-4847695 0.0006 64_[+1]_48 chr2R:19267321-19267441 0.0006 94_[+1]_18 chr2L:17296351-17296471 0.0006 93_[+1]_19 chr3L:6375036-6375156 0.00063 19_[+1]_93 chr2L:21865578-21865698 0.00066 79_[+1]_33 chr3R:31697755-31697875 0.00066 20_[+1]_92 chr3L:13135039-13135159 0.0007 76_[+1]_36 chr2R:25204997-25205117 0.0007 28_[+1]_84 chr3L:18225566-18225686 0.0007 46_[+1]_66 chr2L:21105245-21105365 0.00083 28_[+1]_84 chr2R:13570135-13570255 0.00083 82_[+1]_30 chrX:4562117-4562237 0.00083 32_[+1]_80 chr3R:6983827-6983947 0.00083 99_[+1]_13 chr2R:13194933-13195053 0.00083 41_[+1]_71 chr2L:11419048-11419168 0.00087 68_[+1]_44 chrX:7574071-7574191 0.001 102_[+1]_10 chr3R:24604207-24604327 0.0011 11_[+1]_101 chr3R:8326903-8327023 0.0012 44_[+1]_68 chrX:693198-693318 0.0012 71_[+1]_41 chr2R:11085478-11085598 0.0013 13_[+1]_99 chr3L:20667528-20667648 0.0014 112_[+1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGCTGC width=8 seqs=193 chr2L:11470162-11470282 ( 92) GCAGCTGC 1 chr3L:16049199-16049319 ( 46) GCAGCTGC 1 chr2R:14433302-14433422 ( 92) GCAGCTGC 1 chr2R:15132391-15132511 ( 76) GCAGCTGC 1 chr2L:8847504-8847624 ( 35) GCAGCTGC 1 chrX:19432234-19432354 ( 93) GCAGCTGC 1 chr2L:7049878-7049998 ( 48) GCAGCTGC 1 chr3R:25596525-25596645 ( 1) GCAGCTGC 1 chr3L:10966812-10966932 ( 97) GCAGCTGC 1 chrX:451193-451313 ( 50) GCAGCTGC 1 chr2R:18672241-18672361 ( 38) GCAGCTGC 1 chrX:7096069-7096189 ( 40) GCAGCTGC 1 chr2R:16807013-16807133 ( 112) GCAGCTGC 1 chr3R:22164475-22164595 ( 55) GCAGCTGC 1 chrX:16427071-16427191 ( 83) GCAGCTGC 1 chr3R:25629575-25629695 ( 3) GCAGCTGC 1 chr3L:22998244-22998364 ( 6) GCAGCTGC 1 chr2L:3835729-3835849 ( 48) GCAGCTGC 1 chr2R:23208886-23209006 ( 44) GCAGCTGC 1 chrX:3862158-3862278 ( 41) GCAGCTGC 1 chr2L:4370125-4370245 ( 39) GCAGCTGC 1 chr2L:21632207-21632327 ( 75) GCAGCTGC 1 chr2L:10548214-10548334 ( 90) GCAGCTGC 1 chr2R:20539350-20539470 ( 71) GCAGCTGC 1 chrX:17746136-17746256 ( 105) GCAGCTGC 1 chr3L:47937-48057 ( 47) GCAGCTGC 1 chr2R:15866252-15866372 ( 21) GCAGCTGC 1 chr3R:10603232-10603352 ( 61) GCAGCTGC 1 chr2R:15699836-15699956 ( 92) GCAGCTGC 1 chr3L:10659676-10659796 ( 93) GCAGCTGC 1 chr2R:25198609-25198729 ( 36) ACAGCTGC 1 chr2R:20604149-20604269 ( 46) ACAGCTGC 1 chr3R:29073139-29073259 ( 79) ACAGCTGC 1 chr3R:9038175-9038295 ( 48) ACAGCTGC 1 chr2R:8245266-8245386 ( 79) ACAGCTGC 1 chr3R:19330110-19330230 ( 61) ACAGCTGC 1 chr3L:22699298-22699418 ( 68) ACAGCTGC 1 chr2R:14429559-14429679 ( 36) ACAGCTGC 1 chr2L:1518198-1518318 ( 102) ACAGCTGC 1 chr2R:13188032-13188152 ( 57) ACAGCTGC 1 chrX:369792-369912 ( 41) ACAGCTGC 1 chrX:687809-687929 ( 26) ACAGCTGC 1 chr3L:5859168-5859288 ( 66) ACAGCTGC 1 chr3R:26018493-26018613 ( 63) GCAGCTGT 1 chr3R:21640474-21640594 ( 57) GCAGCTGT 1 chr3R:16187972-16188092 ( 73) GCAGCTGT 1 chr3R:22633077-22633197 ( 68) GCAGCTGT 1 chr2L:16477717-16477837 ( 69) GCAGCTGT 1 chr3L:18138375-18138495 ( 49) GCAGCTGT 1 chr3R:25999433-25999553 ( 43) GCAGCTGT 1 chr2R:7486432-7486552 ( 96) GCAGCTGT 1 chr2R:22593484-22593604 ( 41) GCAGCTGT 1 chr3L:5860826-5860946 ( 100) GCAGCTGT 1 chr2R:21049057-21049177 ( 72) GCAGCTGT 1 chr3R:29559611-29559731 ( 23) GCAGCTGT 1 chrX:2308546-2308666 ( 56) GCAGCTGT 1 chr3L:17496347-17496467 ( 76) GCAGCTGT 1 chr2R:9714729-9714849 ( 110) GCAGCTGA 1 chr2L:5870974-5871094 ( 14) GCAGCTGA 1 chr2R:15910337-15910457 ( 37) GCACCTGC 1 chr3L:16012995-16013115 ( 33) GCACCTGC 1 chr3L:16473215-16473335 ( 58) GCACCTGC 1 chr3L:13105873-13105993 ( 37) GCAGCTGA 1 chr2L:21345843-21345963 ( 56) GCAGCTGA 1 chr3R:11354609-11354729 ( 96) GCAGCTGA 1 chr3L:5856092-5856212 ( 50) GCAGCTGA 1 chr3L:4233177-4233297 ( 68) GCACCTGC 1 chrX:382989-383109 ( 41) GCAGCTGA 1 chr3R:8135232-8135352 ( 61) GCACCTGC 1 chr3L:13409608-13409728 ( 107) GCACCTGC 1 chr2L:3587975-3588095 ( 87) GCAGCTGA 1 chr3L:72311-72431 ( 45) GCACCTGC 1 chr2R:6980441-6980561 ( 45) GCAGCTGA 1 chrX:519004-519124 ( 47) GCACCTGC 1 chr2L:18361285-18361405 ( 27) GCAGCTGA 1 chr2L:12457816-12457936 ( 5) GCACCTGC 1 chr3L:13076220-13076340 ( 34) GCACCTGC 1 chr2L:1448281-1448401 ( 2) GCAGGTGC 1 chr2L:4375133-4375253 ( 34) GCAGGTGC 1 chr3L:12506152-12506272 ( 77) GCAGGTGC 1 chr2L:18920350-18920470 ( 84) GCAGGTGC 1 chr2R:18199566-18199686 ( 63) GCAGGTGC 1 chrX:7573870-7573990 ( 46) GCAGGTGC 1 chr3L:22989589-22989709 ( 3) GCAGGTGC 1 chr3R:11877257-11877377 ( 39) GCAGGTGC 1 chr2R:12776156-12776276 ( 32) ACAGCTGT 1 chrX:15674703-15674823 ( 84) ACAGCTGT 1 chrX:10116371-10116491 ( 73) ACAGCTGT 1 chr2R:6515914-6516034 ( 106) CCAGCTGC 1 chr3R:29547605-29547725 ( 53) CCAGCTGC 1 chr2R:9490943-9491063 ( 69) CCAGCTGC 1 chr3L:3848594-3848714 ( 36) CCAGCTGC 1 chrX:18298044-18298164 ( 87) CCAGCTGC 1 chrX:18867137-18867257 ( 34) CCAGCTGC 1 chr2R:24277045-24277165 ( 82) CCAGCTGC 1 chr3R:5056217-5056337 ( 97) GCAGCTGG 1 chr2L:8282012-8282132 ( 52) TCAGCTGC 1 chr3R:4866206-4866326 ( 95) TCAGCTGC 1 chr3R:6886344-6886464 ( 28) GCAGCTGG 1 chr2R:24986452-24986572 ( 68) GCAGCTGG 1 chr3L:21066740-21066860 ( 93) GCAGCTGG 1 chr3R:29670901-29671021 ( 5) GCAGCTGG 1 chr2L:9989985-9990105 ( 45) GCAGCTGG 1 chr2L:15458540-15458660 ( 67) GCAGCTGG 1 chr3L:13054068-13054188 ( 39) GCAGCTGG 1 chr2R:6713573-6713693 ( 47) TCAGCTGC 1 chr3R:4602280-4602400 ( 71) TCAGCTGC 1 chrX:393118-393238 ( 36) TCAGCTGC 1 chr2L:16643556-16643676 ( 65) ACAGCTGA 1 chr2L:1410915-1411035 ( 92) ACACCTGC 1 chr3R:4350478-4350598 ( 46) ACAGCTGA 1 chr2L:17564693-17564813 ( 20) ACAGCTGA 1 chr2L:8266869-8266989 ( 66) ACACCTGC 1 chr3L:14189507-14189627 ( 95) ACAGCTGA 1 chr2L:712812-712932 ( 37) ACACCTGC 1 chr3L:13216204-13216324 ( 95) ACACCTGC 1 chrX:10116573-10116693 ( 54) ACACCTGC 1 chr3L:297289-297409 ( 59) ACAGCTGA 1 chr3R:8171339-8171459 ( 64) ACACCTGC 1 chr3R:26010374-26010494 ( 55) ACACCTGC 1 chrX:18910297-18910417 ( 22) ACACCTGC 1 chr2R:25204053-25204173 ( 30) ACACCTGC 1 chr4:833166-833286 ( 13) GCACCTGT 1 chr3R:30470241-30470361 ( 6) ACAGGTGC 1 chr2L:1886661-1886781 ( 74) ACAGGTGC 1 chrX:4447703-4447823 ( 61) ACAGGTGC 1 chr2L:5423047-5423167 ( 24) GCACCTGT 1 chr3L:9421566-9421686 ( 40) ACAGGTGC 1 chrX:15660701-15660821 ( 61) GCACCTGT 1 chr3R:26024699-26024819 ( 34) GCAGGTGT 1 chr3L:2384598-2384718 ( 106) GCAGGTGT 1 chr3L:6813828-6813948 ( 75) GCAGGTGT 1 chr2L:4368047-4368167 ( 109) GCAGGTGT 1 chrX:17316895-17317015 ( 82) GCAGGTGT 1 chr3R:21654298-21654418 ( 32) GCAGGTGT 1 chr2R:11742396-11742516 ( 39) ACAGCTGG 1 chr3R:29532392-29532512 ( 99) CCAGCTGT 1 chrX:11146589-11146709 ( 75) CCAGCTGT 1 chrX:17340886-17341006 ( 18) ACAGCTGG 1 chr2L:4054869-4054989 ( 14) TCAGCTGT 1 chr3L:10769049-10769169 ( 26) TCAGCTGT 1 chr3R:4875351-4875471 ( 13) GCAGGTGA 1 chr2R:8656222-8656342 ( 1) GCAGGTGA 1 chr3L:13393243-13393363 ( 33) GCAGGTGA 1 chr3L:5993067-5993187 ( 29) GCAGGTGA 1 chr2R:22681759-22681879 ( 57) ACACCTGT 1 chr3L:2867926-2868046 ( 65) GCTGCTGC 1 chr2L:20995913-20996033 ( 5) GCAACTGC 1 chr2L:7308976-7309096 ( 4) ACAGGTGT 1 chrX:8039185-8039305 ( 57) GCAACTGC 1 chrX:4584213-4584333 ( 57) GCTGCTGC 1 chrX:19842464-19842584 ( 65) GCAACTGC 1 chr3L:11001540-11001660 ( 77) ACAGGTGT 1 chrX:18310709-18310829 ( 58) GCAACTGC 1 chr2L:17222236-17222356 ( 101) CCAGCTGA 1 chr3L:20926741-20926861 ( 26) CCACCTGC 1 chr3L:13050922-13051042 ( 4) CCACCTGC 1 chr2L:11194789-11194909 ( 49) CCACCTGC 1 chr2L:9988348-9988468 ( 35) TCACCTGC 1 chrX:399885-400005 ( 77) TCACCTGC 1 chr3L:13394275-13394395 ( 57) TCACCTGC 1 chr2L:15741622-15741742 ( 27) TCAGGTGC 1 chr2R:25044872-25044992 ( 81) ACAGGTGA 1 chr3R:13724442-13724562 ( 79) ACAGGTGA 1 chr3R:4987705-4987825 ( 43) ACAGGTGA 1 chr4:1090564-1090684 ( 101) ACAGGTGA 1 chr2L:17263440-17263560 ( 72) CCAGCTGG 1 chr2R:13196237-13196357 ( 71) GCAGATGT 1 chrX:457151-457271 ( 57) GCAGATGT 1 chr3L:2711766-2711886 ( 86) CCAGCTGG 1 chr3R:8687508-8687628 ( 36) GCAGATGT 1 chrX:392381-392501 ( 50) GCAGATGT 1 chr3R:4847575-4847695 ( 65) TCAGCTGG 1 chr2R:19267321-19267441 ( 95) ACTGCTGC 1 chr2L:17296351-17296471 ( 94) ACAACTGC 1 chr3L:6375036-6375156 ( 20) GCTGCTGT 1 chr2L:21865578-21865698 ( 80) CCACCTGT 1 chr3R:31697755-31697875 ( 21) ACACCTGG 1 chr3L:13135039-13135159 ( 77) TCACCTGT 1 chr2R:25204997-25205117 ( 29) TCACCTGT 1 chr3L:18225566-18225686 ( 47) TCACCTGT 1 chr2L:21105245-21105365 ( 29) ACAGATGT 1 chr2R:13570135-13570255 ( 83) ACAGATGT 1 chrX:4562117-4562237 ( 33) ACAGATGT 1 chr3R:6983827-6983947 ( 100) GCTGCTGA 1 chr2R:13194933-13195053 ( 42) ACAGATGT 1 chr2L:11419048-11419168 ( 69) GCAAGTGC 1 chrX:7574071-7574191 ( 103) GCACGTGG 1 chr3R:24604207-24604327 ( 12) GCAGCCGC 1 chr3R:8326903-8327023 ( 45) GCAGCTTC 1 chrX:693198-693318 ( 72) GGAGCTGC 1 chr2R:11085478-11085598 ( 14) ACTGCTGA 1 chr3L:20667528-20667648 ( 113) GCTGGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 7.63919 E= 6.5e-153 5 -154 127 -177 -1424 205 -552 -1424 191 -1424 -1424 -287 -304 -41 173 -1424 -263 172 -52 -1424 -1424 -553 -1424 191 -1424 -1424 206 -568 -93 118 -162 -12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 193 E= 6.5e-153 0.264249 0.082902 0.575130 0.077720 0.000000 0.994819 0.005181 0.000000 0.963731 0.000000 0.000000 0.036269 0.031088 0.181347 0.787565 0.000000 0.041451 0.792746 0.165803 0.000000 0.000000 0.005181 0.000000 0.994819 0.000000 0.000000 0.994819 0.005181 0.134715 0.544041 0.077720 0.243523 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-1 regular expression -------------------------------------------------------------------------------- [GA]CAGCTG[CT] -------------------------------------------------------------------------------- Time 9.94 secs. ******************************************************************************** ******************************************************************************** MOTIF MAAACAAA MEME-2 width = 8 sites = 44 llr = 383 E-value = 2.8e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAAACAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 6a8a:a98 pos.-specific C 4:2:a::: probability G ::::::1: matrix T :::::::2 bits 2.1 * 1.9 * *** 1.7 * *** 1.4 * *** Relative 1.2 ******* Entropy 1.0 ******* (12.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAACAAA consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAACAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:25044872-25044992 91 1.73e-05 ACAGGTGATC AAAACAAA GTCCCACAGG chrX:9729720-9729840 59 1.73e-05 aataaacata aaaacaaa caagcaaata chr2L:21105245-21105365 82 1.73e-05 ATGCTAAACA AAAACAAA TTGTCCATGC chr2R:14433302-14433422 104 1.73e-05 AGCTGCTCCa aaaacaaa aaaaaaaaa chr3L:12676910-12677030 109 1.73e-05 TCATCCTGTC AAAACAAA GTGT chr2L:8548277-8548397 70 1.73e-05 AGGACAGAGA AAAACAAA TAACGCAGCC chrX:8039185-8039305 11 1.73e-05 TCGCTCTTTG AAAACAAA TTGAGCGGTG chr3R:5761055-5761175 42 1.73e-05 GGTCGTGCAC AAAACAAA TACATAAGTA chrX:7096069-7096189 96 1.73e-05 TGCAACTTGA AAAACAAA AAATACGGCA chr2L:712812-712932 56 1.73e-05 GCCCAGAGAT AAAACAAA GATGAGCCTA chr2L:393586-393706 29 1.73e-05 tacccaaaAT AAAACAAA TTTATCCATT chr2R:13188032-13188152 28 1.73e-05 TGGCAGTCAC AAAACAAA CAGAGAAGGA chr2L:15458540-15458660 19 1.73e-05 TCTCTTAATG AAAACAAA CAATGAGACG chr3L:9421566-9421686 17 1.73e-05 TTGCCAAGGT AAAACAAA AAATAACGGT chr2L:20995913-20996033 24 3.35e-05 GAACTCTGAG CAAACAAA GGAGCGTGGT chr3R:17816515-17816635 55 3.35e-05 aaggcaaagt caaacaaa acataacaaa chr2L:17296351-17296471 70 3.35e-05 aacaaagaca caaacaaa caacaagccg chr3L:3848594-3848714 95 3.35e-05 ATTGGATTCC CAAACAAA GGACATTCTG chr3L:22699298-22699418 53 3.35e-05 GTGAGGTATG CAAACAAA AAACGGAACA chr3L:13393243-13393363 52 3.35e-05 AATGCTCAAT CAAACAAA AGTGAAGCAA chr3R:4875351-4875471 39 5.14e-05 GATGTGCCTT AAAACAAT ATTTGCGCGC chr3L:22162645-22162765 48 5.14e-05 CAATGCTAAT AAAACAAT GTTATTAATA chr3L:18138375-18138495 69 5.14e-05 TGGCCATTGT AAAACAAT AAAATCAGAG chr2L:21630720-21630840 2 5.14e-05 G AAAACAAT ACACTAGGAC chr3L:5993067-5993187 90 5.14e-05 TGTCACTGCA AAAACAAT GCACTCGACG chr3R:5125105-5125225 10 6.76e-05 GGGAACTCA AACACAAA ACCTCCTTTA chr3L:4992285-4992405 89 6.76e-05 agcaaataca aacacaaa tagcgaaatc chr3L:10659676-10659796 8 6.76e-05 GAGTGGG AACACAAA GAATACAGAA chr3R:13724442-13724562 3 8.44e-05 AA CAAACAAT CGGGTCTCAA chr3R:8704798-8704918 26 8.44e-05 AGCTAAAGGT CAAACAAT ATTTGTTTAA chr3L:13054068-13054188 70 8.44e-05 GTCTGGTCAA CAAACAAT GGCCAAGGCG chr3R:25999433-25999553 25 9.96e-05 CAAATCATAA CACACAAA TCTAGAAACG chrX:10116573-10116693 102 9.96e-05 GATTAGAATA CACACAAA TGGGTTTATT chr3R:29670901-29671021 49 9.96e-05 AACCGAAGCA CACACAAA TGCACCACTC chr2R:9714729-9714849 39 1.16e-04 AAAATGTGCA AAAACAGA AAAACAGGCG chr2L:21368931-21369051 40 1.16e-04 GTACTATCTG AAAACAGA ACCACGTAGG chrX:18910297-18910417 86 1.16e-04 GCGCGTAATT AAAACAGA TGATATTGGC chr2L:9989985-9990105 87 1.16e-04 CTGCTGCCCG AAAACAGA AAATTACTGT chr2L:1448281-1448401 82 1.31e-04 CACATAAGAC CAAACAGA AAAATCGAGG chr2L:1447456-1447576 63 1.49e-04 TTTACTGGGG TAAACAAA TTTTCTCCGT chr2R:9421206-9421326 68 1.49e-04 TTATTATAAA TAAACAAA CCGTGTATGC chr2L:16477717-16477837 47 1.81e-04 CAACACTGGC CACACAAT TCTCGAACCA chrX:369991-370111 74 1.81e-04 GGAGCATCGT CACACAAT AACGTTATAC chr2L:7526035-7526155 65 3.09e-04 GTTATATTTT CAAACACA TTTTCCTAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAACAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:25044872-25044992 1.7e-05 90_[+2]_22 chrX:9729720-9729840 1.7e-05 58_[+2]_54 chr2L:21105245-21105365 1.7e-05 81_[+2]_31 chr2R:14433302-14433422 1.7e-05 103_[+2]_9 chr3L:12676910-12677030 1.7e-05 108_[+2]_4 chr2L:8548277-8548397 1.7e-05 69_[+2]_43 chrX:8039185-8039305 1.7e-05 10_[+2]_102 chr3R:5761055-5761175 1.7e-05 41_[+2]_71 chrX:7096069-7096189 1.7e-05 95_[+2]_17 chr2L:712812-712932 1.7e-05 55_[+2]_57 chr2L:393586-393706 1.7e-05 28_[+2]_84 chr2R:13188032-13188152 1.7e-05 27_[+2]_85 chr2L:15458540-15458660 1.7e-05 18_[+2]_94 chr3L:9421566-9421686 1.7e-05 16_[+2]_96 chr2L:20995913-20996033 3.4e-05 23_[+2]_89 chr3R:17816515-17816635 3.4e-05 54_[+2]_58 chr2L:17296351-17296471 3.4e-05 69_[+2]_43 chr3L:3848594-3848714 3.4e-05 94_[+2]_18 chr3L:22699298-22699418 3.4e-05 52_[+2]_60 chr3L:13393243-13393363 3.4e-05 51_[+2]_61 chr3R:4875351-4875471 5.1e-05 38_[+2]_74 chr3L:22162645-22162765 5.1e-05 47_[+2]_65 chr3L:18138375-18138495 5.1e-05 68_[+2]_44 chr2L:21630720-21630840 5.1e-05 1_[+2]_111 chr3L:5993067-5993187 5.1e-05 89_[+2]_23 chr3R:5125105-5125225 6.8e-05 9_[+2]_103 chr3L:4992285-4992405 6.8e-05 88_[+2]_24 chr3L:10659676-10659796 6.8e-05 7_[+2]_105 chr3R:13724442-13724562 8.4e-05 2_[+2]_110 chr3R:8704798-8704918 8.4e-05 25_[+2]_87 chr3L:13054068-13054188 8.4e-05 69_[+2]_43 chr3R:25999433-25999553 0.0001 24_[+2]_88 chrX:10116573-10116693 0.0001 101_[+2]_11 chr3R:29670901-29671021 0.0001 48_[+2]_64 chr2R:9714729-9714849 0.00012 38_[+2]_74 chr2L:21368931-21369051 0.00012 39_[+2]_73 chrX:18910297-18910417 0.00012 85_[+2]_27 chr2L:9989985-9990105 0.00012 86_[+2]_26 chr2L:1448281-1448401 0.00013 81_[+2]_31 chr2L:1447456-1447576 0.00015 62_[+2]_50 chr2R:9421206-9421326 0.00015 67_[+2]_45 chr2L:16477717-16477837 0.00018 46_[+2]_66 chrX:369991-370111 0.00018 73_[+2]_39 chr2L:7526035-7526155 0.00031 64_[+2]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAACAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAAACAAA width=8 seqs=44 chr2R:25044872-25044992 ( 91) AAAACAAA 1 chrX:9729720-9729840 ( 59) AAAACAAA 1 chr2L:21105245-21105365 ( 82) AAAACAAA 1 chr2R:14433302-14433422 ( 104) AAAACAAA 1 chr3L:12676910-12677030 ( 109) AAAACAAA 1 chr2L:8548277-8548397 ( 70) AAAACAAA 1 chrX:8039185-8039305 ( 11) AAAACAAA 1 chr3R:5761055-5761175 ( 42) AAAACAAA 1 chrX:7096069-7096189 ( 96) AAAACAAA 1 chr2L:712812-712932 ( 56) AAAACAAA 1 chr2L:393586-393706 ( 29) AAAACAAA 1 chr2R:13188032-13188152 ( 28) AAAACAAA 1 chr2L:15458540-15458660 ( 19) AAAACAAA 1 chr3L:9421566-9421686 ( 17) AAAACAAA 1 chr2L:20995913-20996033 ( 24) CAAACAAA 1 chr3R:17816515-17816635 ( 55) CAAACAAA 1 chr2L:17296351-17296471 ( 70) CAAACAAA 1 chr3L:3848594-3848714 ( 95) CAAACAAA 1 chr3L:22699298-22699418 ( 53) CAAACAAA 1 chr3L:13393243-13393363 ( 52) CAAACAAA 1 chr3R:4875351-4875471 ( 39) AAAACAAT 1 chr3L:22162645-22162765 ( 48) AAAACAAT 1 chr3L:18138375-18138495 ( 69) AAAACAAT 1 chr2L:21630720-21630840 ( 2) AAAACAAT 1 chr3L:5993067-5993187 ( 90) AAAACAAT 1 chr3R:5125105-5125225 ( 10) AACACAAA 1 chr3L:4992285-4992405 ( 89) AACACAAA 1 chr3L:10659676-10659796 ( 8) AACACAAA 1 chr3R:13724442-13724562 ( 3) CAAACAAT 1 chr3R:8704798-8704918 ( 26) CAAACAAT 1 chr3L:13054068-13054188 ( 70) CAAACAAT 1 chr3R:25999433-25999553 ( 25) CACACAAA 1 chrX:10116573-10116693 ( 102) CACACAAA 1 chr3R:29670901-29671021 ( 49) CACACAAA 1 chr2R:9714729-9714849 ( 39) AAAACAGA 1 chr2L:21368931-21369051 ( 40) AAAACAGA 1 chrX:18910297-18910417 ( 86) AAAACAGA 1 chr2L:9989985-9990105 ( 87) AAAACAGA 1 chr2L:1448281-1448401 ( 82) CAAACAGA 1 chr2L:1447456-1447576 ( 63) TAAACAAA 1 chr2R:9421206-9421326 ( 68) TAAACAAA 1 chr2L:16477717-16477837 ( 47) CACACAAT 1 chrX:369991-370111 ( 74) CACACAAT 1 chr2L:7526035-7526155 ( 65) CAAACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAACAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8592 E= 2.8e-010 121 60 -1210 -254 197 -1210 -1210 -1210 168 -40 -1210 -1210 197 -1210 -1210 -1210 -1210 206 -1210 -1210 197 -1210 -1210 -1210 175 -340 -107 -1210 159 -1210 -1210 -22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAACAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 2.8e-010 0.590909 0.363636 0.000000 0.045455 1.000000 0.000000 0.000000 0.000000 0.818182 0.181818 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.863636 0.022727 0.113636 0.000000 0.772727 0.000000 0.000000 0.227273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAACAAA MEME-2 regular expression -------------------------------------------------------------------------------- [AC]AAACAA[AT] -------------------------------------------------------------------------------- Time 15.93 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCAGSTG MEME-3 width = 8 sites = 24 llr = 220 E-value = 8.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCAGSTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 22:a:::: pos.-specific C :2a::3:: probability G 86::a7:a matrix T ::::::a: bits 2.1 * * * 1.9 *** ** 1.7 *** ** 1.4 *** ** Relative 1.2 * ****** Entropy 1.0 * ****** (13.3 bits) 0.8 * ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCAGGTG consensus AA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGSTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:16643556-16643676 39 1.24e-05 TAGTGGGAGT GGCAGGTG GTGGAGCCCC chr3R:25999433-25999553 106 1.24e-05 GCTTTTTGCG GGCAGGTG AGCGAGT chrX:451193-451313 97 1.24e-05 GGCGTCCATG GGCAGGTG CAACATTTAC chr2L:21345843-21345963 34 1.24e-05 TCATCCGTGT GGCAGGTG TAGCCACTTT chrX:17746136-17746256 47 1.24e-05 TTTTTTTTGC GGCAGGTG ATGCGGTGAT chr3L:47937-48057 99 1.24e-05 CACGTGGCAG GGCAGGTG CGAGCAGCAG chrX:7096069-7096189 110 2.50e-05 CAAAAAATAC GGCAGCTG AGC chrX:16427071-16427191 61 2.50e-05 AAACGAAGGC GGCAGCTG GTGGAATCGC chr2L:1518198-1518318 66 2.50e-05 CGGAGGAAAA GGCAGCTG GCGCTAGACA chr2L:10548214-10548334 75 2.50e-05 TGCACACGGG GGCAGCTG ATCCCGGGCA chr2L:8266869-8266989 50 3.83e-05 GCGAAAGCGA GACAGGTG ATGTCTGAAC chr3R:30470241-30470361 51 3.83e-05 CATTGTGTGG GACAGGTG GCATAGTGGC chr2R:6980441-6980561 66 3.83e-05 AATGCAATTG GACAGGTG GCAGAGACGC chr2L:11194789-11194909 98 3.83e-05 AAGTCGCGCG GACAGGTG GAAAGCGCCA chr3R:22633077-22633197 47 6.43e-05 CATGGCAGCA AGCAGGTG AAACAGCAAC chr2R:15910337-15910457 62 6.43e-05 GATAAGATGT GCCAGGTG Aggagtggtt chr2R:18672241-18672361 14 6.43e-05 AGCGGGCGAG GCCAGGTG CAGATTGTTC chr3L:4233177-4233297 21 6.43e-05 AATATTGATA AGCAGGTG TTTAGTATTG chr2R:24277045-24277165 31 6.43e-05 GGAATGGAGG AGCAGGTG GCGGTGGAGG chr3L:17496347-17496467 38 6.43e-05 ACACAGGTAC GCCAGGTG AGTTGAGTCC chrX:19432234-19432354 36 7.77e-05 acgttgcCAG GACAGCTG TCGTCGTGAC chrX:18867137-18867257 110 1.04e-04 TGTCGCTGCT GCCAGCTG AAC chr3R:25629575-25629695 88 1.04e-04 ACGAGGTCGG AGCAGCTG CCAAGATTCC chr3L:10659676-10659796 31 1.04e-04 CAGAAGATAT AGCAGCTG TTGCACCTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGSTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:16643556-16643676 1.2e-05 38_[+3]_74 chr3R:25999433-25999553 1.2e-05 105_[+3]_7 chrX:451193-451313 1.2e-05 96_[+3]_16 chr2L:21345843-21345963 1.2e-05 33_[+3]_79 chrX:17746136-17746256 1.2e-05 46_[+3]_66 chr3L:47937-48057 1.2e-05 98_[+3]_14 chrX:7096069-7096189 2.5e-05 109_[+3]_3 chrX:16427071-16427191 2.5e-05 60_[+3]_52 chr2L:1518198-1518318 2.5e-05 65_[+3]_47 chr2L:10548214-10548334 2.5e-05 74_[+3]_38 chr2L:8266869-8266989 3.8e-05 49_[+3]_63 chr3R:30470241-30470361 3.8e-05 50_[+3]_62 chr2R:6980441-6980561 3.8e-05 65_[+3]_47 chr2L:11194789-11194909 3.8e-05 97_[+3]_15 chr3R:22633077-22633197 6.4e-05 46_[+3]_66 chr2R:15910337-15910457 6.4e-05 61_[+3]_51 chr2R:18672241-18672361 6.4e-05 13_[+3]_99 chr3L:4233177-4233297 6.4e-05 20_[+3]_92 chr2R:24277045-24277165 6.4e-05 30_[+3]_82 chr3L:17496347-17496467 6.4e-05 37_[+3]_75 chrX:19432234-19432354 7.8e-05 35_[+3]_77 chrX:18867137-18867257 0.0001 109_[+3]_3 chr3R:25629575-25629695 0.0001 87_[+3]_25 chr3L:10659676-10659796 0.0001 30_[+3]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGSTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCAGSTG width=8 seqs=24 chr2L:16643556-16643676 ( 39) GGCAGGTG 1 chr3R:25999433-25999553 ( 106) GGCAGGTG 1 chrX:451193-451313 ( 97) GGCAGGTG 1 chr2L:21345843-21345963 ( 34) GGCAGGTG 1 chrX:17746136-17746256 ( 47) GGCAGGTG 1 chr3L:47937-48057 ( 99) GGCAGGTG 1 chrX:7096069-7096189 ( 110) GGCAGCTG 1 chrX:16427071-16427191 ( 61) GGCAGCTG 1 chr2L:1518198-1518318 ( 66) GGCAGCTG 1 chr2L:10548214-10548334 ( 75) GGCAGCTG 1 chr2L:8266869-8266989 ( 50) GACAGGTG 1 chr3R:30470241-30470361 ( 51) GACAGGTG 1 chr2R:6980441-6980561 ( 66) GACAGGTG 1 chr2L:11194789-11194909 ( 98) GACAGGTG 1 chr3R:22633077-22633197 ( 47) AGCAGGTG 1 chr2R:15910337-15910457 ( 62) GCCAGGTG 1 chr2R:18672241-18672361 ( 14) GCCAGGTG 1 chr3L:4233177-4233297 ( 21) AGCAGGTG 1 chr2R:24277045-24277165 ( 31) AGCAGGTG 1 chr3L:17496347-17496467 ( 38) GCCAGGTG 1 chrX:19432234-19432354 ( 36) GACAGCTG 1 chrX:18867137-18867257 ( 110) GCCAGCTG 1 chr3R:25629575-25629695 ( 88) AGCAGCTG 1 chr3L:10659676-10659796 ( 31) AGCAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGSTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1076 E= 8.7e+001 -30 -1123 173 -1123 -30 -53 139 -1123 -1123 206 -1123 -1123 197 -1123 -1123 -1123 -1123 -1123 207 -1123 -1123 47 149 -1123 -1123 -1123 -1123 191 -1123 -1123 207 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGSTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 8.7e+001 0.208333 0.000000 0.791667 0.000000 0.208333 0.166667 0.625000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGSTG MEME-3 regular expression -------------------------------------------------------------------------------- [GA][GA]CAG[GC]TG -------------------------------------------------------------------------------- Time 21.83 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTKTKTK MEME-4 width = 8 sites = 50 llr = 395 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTKTKTK MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::2:::: pos.-specific C :::::::: probability G :3:5:4:6 matrix T a7a3a6a4 bits 2.1 1.9 * * * * 1.7 * * * * 1.4 * * * * Relative 1.2 * * * * Entropy 1.0 *** **** (11.4 bits) 0.8 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGTTTG consensus G T G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTKTK MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3577605-3577725 24 1.96e-05 TCGATCTTGT TTTGTTTG TTGTCAAAGG chr3L:7371608-7371728 81 1.96e-05 TCATTCATTG TTTGTTTG CCCATTGCAG chr2L:14579624-14579744 27 1.96e-05 GCCGTATTTG TTTGTTTG TCATTTCCTT chr2L:17296351-17296471 11 1.96e-05 TTTCCCTGAA TTTGTTTG TCCAAGGAGC chr3R:16905018-16905138 49 1.96e-05 AGCTTGTTTA TTTGTTTG CCTTCGATGC chr2L:393586-393706 81 1.96e-05 GTTTTTTAAA TTTGTTTG TAGAAAATAA chr3R:8704798-8704918 106 1.96e-05 AATGATTTGA TTTGTTTG CCCAATT chr3L:72311-72431 112 1.96e-05 CCGACTGCTT TTTGTTTG T chr2R:6980441-6980561 31 1.96e-05 AATTGTTGTA TTTGTTTG TCCGACGCAG chr3R:24604207-24604327 112 3.72e-05 TCATTGGTCA TTTGTGTG G chr2R:11742396-11742516 14 3.72e-05 CTGGCTCTAA TTTGTGTG GCATTGTTGC chr2R:11085478-11085598 34 3.72e-05 CCGCTTGGCA TTTGTGTG TTTGGCAACG chrX:18867137-18867257 11 3.72e-05 TGCGACTGGG TTTGTGTG TGTGTAGTGG chr3R:4875351-4875471 66 7.67e-05 CCTGCAGTTG TGTGTTTG GTTAGCAATT chr3R:21534749-21534869 31 7.67e-05 CAGATAAATG TGTGTTTG CTAGCAGCAG chr3R:22164475-22164595 110 7.67e-05 TCTGAGCCCT TTTGTTTT ATG chr3R:8687508-8687628 98 7.67e-05 CGTGtttttt tttgtttt tgtttttgtt chr3L:10769049-10769169 64 7.67e-05 CGCCTGCTGT TTTGTTTT GTCGATATTA chrX:17746136-17746256 38 9.85e-05 TTTCTTTTTT TTTTTTTG CGGCAGGTGA chrX:687809-687929 34 9.85e-05 CGACAGCTGC TTTTTTTG TTACGCGGGT chr3L:2867926-2868046 100 1.34e-04 GACGTCTGTA TTTGTGTT CTGAGGCCCC chr3L:12676910-12677030 38 1.34e-04 catgtgtgcg tgtgtgtg tTCGGCAGTG chr2L:11419048-11419168 80 1.34e-04 CAAGTGCATG TGTGTGTG TACACACTGC chr3R:5056217-5056337 86 1.34e-04 ATCAATCACC TGTGTGTG CCTGCAGCTG chr2L:17263440-17263560 44 1.34e-04 GGCGCTGTGT TTTGTGTT CCGTCGGTTT chrX:7574071-7574191 34 1.34e-04 CCCCGTTGAG TTTGTGTT TTCCTCCTGA chr2L:8266869-8266989 91 1.34e-04 TTTGCAGTTG TGTGTGTG AGTGTTTTAC chr3R:29559611-29559731 39 1.34e-04 GTTTTTTTAT TTTGTGTT GTTTTCTGGC chr2L:6462541-6462661 56 1.75e-04 GTTTAGCCAC TTTATTTG TTTAGGAACG chrX:10116573-10116693 36 1.75e-04 GGTTCCCAGA TTTATTTG TTCAAATTTT chr2L:18920350-18920470 69 1.75e-04 CCTACTCCGG TTTATTTG CACTCTGGCA chr2L:19938945-19939065 50 1.75e-04 CTTTGTCTAC TTTTTGTG CTGTTAAGCG chrX:393118-393238 2 1.75e-04 T TTTATTTG TGCCCTGTGC chr3R:4867752-4867872 72 1.94e-04 TTGTATATCT TGTGTTTT GTTATTGTTT chrX:4562117-4562237 61 2.38e-04 GATGATCCCT TTTTTTTT TAACCATGGA chr2R:22593484-22593604 90 2.38e-04 ATGCCTCAGC TGTTTTTG TTCTCCCGAC chrX:19842464-19842584 53 2.38e-04 GTTTCGCCCC TTTTTTTT CGGGGCAACT chr2R:13188032-13188152 85 2.38e-04 GGTTTTCTTT TTTTTTTT TAATGGGCGC chr2L:1886661-1886781 90 2.38e-04 GCGCATTGAG TGTTTTTG TAGTCGTTGC chr3R:26018493-26018613 47 3.57e-04 TTCGATGTGA TTTTTGTT TCGGCTGAGC chr2L:8847504-8847624 56 3.57e-04 CACCACCAAA TTTATTTT CGGCCATGTT chr3L:16473215-16473335 113 3.57e-04 TTCCTTTAGT TTTTTGTT chr3L:20667528-20667648 2 3.57e-04 G TGTTTGTG CCGAAGCGGG chr3L:13409608-13409728 49 3.57e-04 CCGAAACTCC TTTATTTT TTTCCGGTTG chrX:693198-693318 89 3.57e-04 CATTAAAAAA TGTATTTG CCATGGTCGG chr2R:25204053-25204173 42 3.57e-04 ACCTGCTTGA TGTTTGTG AGCTATGGTC chr3R:10603232-10603352 85 3.57e-04 catctgcatc tgtatttg tttctatatc chrX:392381-392501 96 3.57e-04 TGCTACTGCC TTTTTGTT CAGCGCCCTC chr3L:18225566-18225686 113 3.79e-04 GTCCAGTGGC TGtttttt chr2L:21345843-21345963 5 4.57e-04 CGTG TGTATTTT ACCCTACATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTKTK MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3577605-3577725 2e-05 23_[+4]_89 chr3L:7371608-7371728 2e-05 80_[+4]_32 chr2L:14579624-14579744 2e-05 26_[+4]_86 chr2L:17296351-17296471 2e-05 10_[+4]_102 chr3R:16905018-16905138 2e-05 48_[+4]_64 chr2L:393586-393706 2e-05 80_[+4]_32 chr3R:8704798-8704918 2e-05 105_[+4]_7 chr3L:72311-72431 2e-05 111_[+4]_1 chr2R:6980441-6980561 2e-05 30_[+4]_82 chr3R:24604207-24604327 3.7e-05 111_[+4]_1 chr2R:11742396-11742516 3.7e-05 13_[+4]_99 chr2R:11085478-11085598 3.7e-05 33_[+4]_79 chrX:18867137-18867257 3.7e-05 10_[+4]_102 chr3R:4875351-4875471 7.7e-05 65_[+4]_47 chr3R:21534749-21534869 7.7e-05 30_[+4]_82 chr3R:22164475-22164595 7.7e-05 109_[+4]_3 chr3R:8687508-8687628 7.7e-05 97_[+4]_15 chr3L:10769049-10769169 7.7e-05 63_[+4]_49 chrX:17746136-17746256 9.9e-05 37_[+4]_75 chrX:687809-687929 9.9e-05 33_[+4]_79 chr3L:2867926-2868046 0.00013 99_[+4]_13 chr3L:12676910-12677030 0.00013 37_[+4]_75 chr2L:11419048-11419168 0.00013 79_[+4]_33 chr3R:5056217-5056337 0.00013 85_[+4]_27 chr2L:17263440-17263560 0.00013 43_[+4]_69 chrX:7574071-7574191 0.00013 33_[+4]_79 chr2L:8266869-8266989 0.00013 90_[+4]_22 chr3R:29559611-29559731 0.00013 38_[+4]_74 chr2L:6462541-6462661 0.00017 55_[+4]_57 chrX:10116573-10116693 0.00017 35_[+4]_77 chr2L:18920350-18920470 0.00017 68_[+4]_44 chr2L:19938945-19939065 0.00017 49_[+4]_63 chrX:393118-393238 0.00017 1_[+4]_111 chr3R:4867752-4867872 0.00019 71_[+4]_41 chrX:4562117-4562237 0.00024 60_[+4]_52 chr2R:22593484-22593604 0.00024 89_[+4]_23 chrX:19842464-19842584 0.00024 52_[+4]_60 chr2R:13188032-13188152 0.00024 84_[+4]_28 chr2L:1886661-1886781 0.00024 89_[+4]_23 chr3R:26018493-26018613 0.00036 46_[+4]_66 chr2L:8847504-8847624 0.00036 55_[+4]_57 chr3L:16473215-16473335 0.00036 112_[+4] chr3L:20667528-20667648 0.00036 1_[+4]_111 chr3L:13409608-13409728 0.00036 48_[+4]_64 chrX:693198-693318 0.00036 88_[+4]_24 chr2R:25204053-25204173 0.00036 41_[+4]_71 chr3R:10603232-10603352 0.00036 84_[+4]_28 chrX:392381-392501 0.00036 95_[+4]_17 chr3L:18225566-18225686 0.00038 112_[+4] chr2L:21345843-21345963 0.00046 4_[+4]_108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTKTK MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTKTKTK width=8 seqs=50 chr2L:3577605-3577725 ( 24) TTTGTTTG 1 chr3L:7371608-7371728 ( 81) TTTGTTTG 1 chr2L:14579624-14579744 ( 27) TTTGTTTG 1 chr2L:17296351-17296471 ( 11) TTTGTTTG 1 chr3R:16905018-16905138 ( 49) TTTGTTTG 1 chr2L:393586-393706 ( 81) TTTGTTTG 1 chr3R:8704798-8704918 ( 106) TTTGTTTG 1 chr3L:72311-72431 ( 112) TTTGTTTG 1 chr2R:6980441-6980561 ( 31) TTTGTTTG 1 chr3R:24604207-24604327 ( 112) TTTGTGTG 1 chr2R:11742396-11742516 ( 14) TTTGTGTG 1 chr2R:11085478-11085598 ( 34) TTTGTGTG 1 chrX:18867137-18867257 ( 11) TTTGTGTG 1 chr3R:4875351-4875471 ( 66) TGTGTTTG 1 chr3R:21534749-21534869 ( 31) TGTGTTTG 1 chr3R:22164475-22164595 ( 110) TTTGTTTT 1 chr3R:8687508-8687628 ( 98) TTTGTTTT 1 chr3L:10769049-10769169 ( 64) TTTGTTTT 1 chrX:17746136-17746256 ( 38) TTTTTTTG 1 chrX:687809-687929 ( 34) TTTTTTTG 1 chr3L:2867926-2868046 ( 100) TTTGTGTT 1 chr3L:12676910-12677030 ( 38) TGTGTGTG 1 chr2L:11419048-11419168 ( 80) TGTGTGTG 1 chr3R:5056217-5056337 ( 86) TGTGTGTG 1 chr2L:17263440-17263560 ( 44) TTTGTGTT 1 chrX:7574071-7574191 ( 34) TTTGTGTT 1 chr2L:8266869-8266989 ( 91) TGTGTGTG 1 chr3R:29559611-29559731 ( 39) TTTGTGTT 1 chr2L:6462541-6462661 ( 56) TTTATTTG 1 chrX:10116573-10116693 ( 36) TTTATTTG 1 chr2L:18920350-18920470 ( 69) TTTATTTG 1 chr2L:19938945-19939065 ( 50) TTTTTGTG 1 chrX:393118-393238 ( 2) TTTATTTG 1 chr3R:4867752-4867872 ( 72) TGTGTTTT 1 chrX:4562117-4562237 ( 61) TTTTTTTT 1 chr2R:22593484-22593604 ( 90) TGTTTTTG 1 chrX:19842464-19842584 ( 53) TTTTTTTT 1 chr2R:13188032-13188152 ( 85) TTTTTTTT 1 chr2L:1886661-1886781 ( 90) TGTTTTTG 1 chr3R:26018493-26018613 ( 47) TTTTTGTT 1 chr2L:8847504-8847624 ( 56) TTTATTTT 1 chr3L:16473215-16473335 ( 113) TTTTTGTT 1 chr3L:20667528-20667648 ( 2) TGTTTGTG 1 chr3L:13409608-13409728 ( 49) TTTATTTT 1 chrX:693198-693318 ( 89) TGTATTTG 1 chr2R:25204053-25204173 ( 42) TGTTTGTG 1 chr3R:10603232-10603352 ( 85) TGTATTTG 1 chrX:392381-392501 ( 96) TTTTTGTT 1 chr3L:18225566-18225686 ( 113) TGTTTTTT 1 chr2L:21345843-21345963 ( 5) TGTATTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTKTK MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7495 E= 1.0e+004 -1229 -1229 -1229 191 -1229 -1229 33 140 -1229 -1229 -1229 191 -51 -1229 118 8 -1229 -1229 -1229 191 -1229 -1229 60 127 -1229 -1229 -1229 191 -1229 -1229 143 44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTKTK MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 1.0e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.300000 0.700000 0.000000 0.000000 0.000000 1.000000 0.180000 0.000000 0.540000 0.280000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.360000 0.640000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.640000 0.360000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTKTK MEME-4 regular expression -------------------------------------------------------------------------------- T[TG]T[GT]T[TG]T[GT] -------------------------------------------------------------------------------- Time 27.65 secs. ******************************************************************************** ******************************************************************************** MOTIF AAATATTT MEME-5 width = 8 sites = 13 llr = 132 E-value = 1.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAATATTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A 7aa:a::: pos.-specific C 3::::::: probability G :::::::: matrix T :::a:aaa bits 2.1 1.9 ******* 1.7 ******* 1.4 ******* Relative 1.2 ******* Entropy 1.0 ******** (14.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAATATTT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7308976-7309096 16 2.12e-05 AGGTGTCTGC AAATATTT GTCCATCCCC chr3R:5761055-5761175 110 2.12e-05 GATTGTGGAT AAATATTT TCT chr2L:20972020-20972140 60 2.12e-05 GTGTAAATAT AAATATTT TTTCCATACA chr3R:21534749-21534869 59 2.12e-05 TAAAAAGTGT AAATATTT GTAAACAACC chr2L:20934814-20934934 45 2.12e-05 ATGTCTCTTT AAATATTT GTAAATTGAG chr3L:9015371-9015491 14 2.12e-05 TGGGCGTTAC AAATATTT AATTGTGAGA chr2L:15475989-15476109 77 2.12e-05 TCAGCTAATT AAATATTT GCATTGGCAA chr3L:3628108-3628228 69 2.12e-05 AGCTCTGGGT AAATATTT GCCCCCAACA chr2L:4368047-4368167 37 2.12e-05 TGGGTTACCA AAATATTT ACACATTTCG chr3L:13135039-13135159 88 4.10e-05 CACCTGTCAA CAATATTT CATGCCCACT chr3R:11354609-11354729 53 4.10e-05 CTTTCTTCGG CAATATTT GATCGTGCTG chr2L:15458540-15458660 2 4.10e-05 G CAATATTT CTCTTAATGA chr3R:4602280-4602400 39 4.10e-05 GGTCCTTAGA CAATATTT GCCTGGCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7308976-7309096 2.1e-05 15_[+5]_97 chr3R:5761055-5761175 2.1e-05 109_[+5]_3 chr2L:20972020-20972140 2.1e-05 59_[+5]_53 chr3R:21534749-21534869 2.1e-05 58_[+5]_54 chr2L:20934814-20934934 2.1e-05 44_[+5]_68 chr3L:9015371-9015491 2.1e-05 13_[+5]_99 chr2L:15475989-15476109 2.1e-05 76_[+5]_36 chr3L:3628108-3628228 2.1e-05 68_[+5]_44 chr2L:4368047-4368167 2.1e-05 36_[+5]_76 chr3L:13135039-13135159 4.1e-05 87_[+5]_25 chr3R:11354609-11354729 4.1e-05 52_[+5]_60 chr2L:15458540-15458660 4.1e-05 1_[+5]_111 chr3R:4602280-4602400 4.1e-05 38_[+5]_74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAATATTT width=8 seqs=13 chr2L:7308976-7309096 ( 16) AAATATTT 1 chr3R:5761055-5761175 ( 110) AAATATTT 1 chr2L:20972020-20972140 ( 60) AAATATTT 1 chr3R:21534749-21534869 ( 59) AAATATTT 1 chr2L:20934814-20934934 ( 45) AAATATTT 1 chr3L:9015371-9015491 ( 14) AAATATTT 1 chr2L:15475989-15476109 ( 77) AAATATTT 1 chr3L:3628108-3628228 ( 69) AAATATTT 1 chr2L:4368047-4368167 ( 37) AAATATTT 1 chr3L:13135039-13135159 ( 88) CAATATTT 1 chr3R:11354609-11354729 ( 53) CAATATTT 1 chr2L:15458540-15458660 ( 2) CAATATTT 1 chr3R:4602280-4602400 ( 39) CAATATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8403 E= 1.4e+004 143 36 -1035 -1035 196 -1035 -1035 -1035 196 -1035 -1035 -1035 -1035 -1035 -1035 191 196 -1035 -1035 -1035 -1035 -1035 -1035 191 -1035 -1035 -1035 191 -1035 -1035 -1035 191 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.4e+004 0.692308 0.307692 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-5 regular expression -------------------------------------------------------------------------------- [AC]AATATTT -------------------------------------------------------------------------------- Time 33.33 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:393118-393238 1.63e-02 120 chr3R:4602280-4602400 1.25e-03 38_[+5(4.10e-05)]_74 chr2L:11194789-11194909 5.64e-02 97_[+3(3.83e-05)]_15 chrX:392381-392501 2.29e-02 120 chr3L:17496347-17496467 7.88e-03 37_[+3(6.43e-05)]_30_[+1(4.02e-05)]_\ 37 chr3R:11877257-11877377 2.51e-02 37_[+3(6.43e-05)]_75 chr3L:13076220-13076340 2.68e-02 33_[+1(6.64e-05)]_79 chrX:15660701-15660821 4.44e-02 120 chr3L:13394275-13394395 1.30e-01 120 chr3L:5859168-5859288 1.87e-03 65_[+1(2.62e-05)]_47 chr3L:22989589-22989709 1.93e-03 1_[+3(1.24e-05)]_111 chr3L:10659676-10659796 1.01e-04 7_[+2(6.76e-05)]_16_[+1(4.02e-05)]_\ 53_[+1(1.26e-05)]_20 chr3L:9421566-9421686 3.55e-04 16_[+2(1.73e-05)]_14_[+3(3.83e-05)]_\ 74 chr3L:5993067-5993187 2.83e-04 89_[+2(5.14e-05)]_23 chr2R:20103260-20103380 7.41e-01 120 chrX:2308546-2308666 5.64e-03 55_[+1(4.02e-05)]_57 chrX:10116371-10116491 1.35e-02 72_[+1(9.40e-05)]_40 chr2L:12457816-12457936 1.50e-01 4_[+1(6.64e-05)]_108 chr2L:18361285-18361405 2.22e-03 26_[+1(6.64e-05)]_86 chr2R:15699836-15699956 5.20e-04 91_[+1(1.26e-05)]_21 chr3L:10769049-10769169 1.14e-02 63_[+4(7.67e-05)]_49 chr3R:21654298-21654418 4.50e-03 30_[+3(6.43e-05)]_82 chr2R:24277045-24277165 1.71e-02 30_[+3(6.43e-05)]_82 chrX:17316895-17317015 8.54e-03 80_[+3(1.24e-05)]_32 chrX:519004-519124 2.75e-02 46_[+1(6.64e-05)]_66 chrX:687809-687929 7.09e-04 25_[+1(2.62e-05)]_[+4(9.85e-05)]_79 chr2L:5423047-5423167 1.48e-01 120 chrX:4447703-4447823 1.75e-01 120 chr2L:4054869-4054989 1.76e-02 120 chr3R:10355121-10355241 6.74e-01 120 chr3R:10603232-10603352 5.21e-04 60_[+1(1.26e-05)]_52 chr2R:15866252-15866372 2.03e-03 20_[+1(1.26e-05)]_92 chr3L:6832192-6832312 9.78e-01 120 chrX:369792-369912 4.23e-04 40_[+1(2.62e-05)]_72 chr3L:47937-48057 1.92e-03 46_[+1(1.26e-05)]_44_[+3(1.24e-05)]_\ 14 chr2R:6980441-6980561 2.05e-04 30_[+4(1.96e-05)]_6_[+1(6.64e-05)]_\ 13_[+3(3.83e-05)]_47 chr3L:72311-72431 2.11e-03 19_[+1(6.64e-05)]_17_[+1(6.64e-05)]_\ 59_[+4(1.96e-05)]_1 chr2L:1886661-1886781 2.80e-03 72_[+3(3.83e-05)]_40 chr3L:13050922-13051042 5.65e-01 120 chrX:17746136-17746256 9.77e-05 37_[+4(9.85e-05)]_1_[+3(1.24e-05)]_\ 50_[+1(1.26e-05)]_8 chr2R:6713573-6713693 1.79e-02 120 chr2L:19938945-19939065 3.38e-01 120 chr2R:25204053-25204173 2.45e-02 120 chr3L:13054068-13054188 8.20e-03 69_[+2(8.44e-05)]_43 chr2R:9421206-9421326 2.34e-02 120 chr3R:8687508-8687628 6.63e-03 97_[+4(7.67e-05)]_15 chr2L:4368047-4368167 8.11e-05 36_[+5(2.12e-05)]_63_[+3(1.24e-05)]_\ 5 chr2R:20539350-20539470 8.30e-03 70_[+1(1.26e-05)]_42 chr3R:29559611-29559731 5.20e-04 21_[+3(2.50e-05)]_91 chr3L:3628108-3628228 5.22e-03 68_[+5(2.12e-05)]_44 chr2L:10548214-10548334 2.31e-04 74_[+3(2.50e-05)]_7_[+1(1.26e-05)]_\ 23 chr2L:15475989-15476109 9.20e-02 76_[+5(2.12e-05)]_36 chr2L:15458540-15458660 3.00e-06 1_[+5(4.10e-05)]_9_[+2(1.73e-05)]_\ 39_[+3(2.50e-05)]_47 chrX:7573870-7573990 4.25e-02 45_[+1(7.90e-05)]_67 chr2R:18199566-18199686 9.95e-04 61_[+3(1.24e-05)]_51 chr2L:9989985-9990105 2.34e-03 120 chrX:17340886-17341006 4.55e-02 16_[+3(7.77e-05)]_96 chr3L:6375036-6375156 8.63e-02 120 chrX:18910297-18910417 2.33e-02 120 chr3R:29670901-29671021 1.13e-03 3_[+3(2.50e-05)]_37_[+2(9.96e-05)]_\ 64 chr2R:13188032-13188152 1.36e-05 27_[+2(1.73e-05)]_21_[+1(2.62e-05)]_\ 56 chrX:11146589-11146709 6.22e-02 120 chr3L:13392083-13392203 6.84e-01 120 chr3R:30470241-30470361 3.26e-03 50_[+3(3.83e-05)]_62 chr3L:13393243-13393363 5.54e-04 31_[+3(1.24e-05)]_12_[+2(3.35e-05)]_\ 61 chr3L:6813828-6813948 6.00e-02 120 chr3L:2384598-2384718 4.86e-03 104_[+3(6.43e-05)]_8 chr2L:21632207-21632327 6.86e-03 74_[+1(1.26e-05)]_38 chr2L:1518198-1518318 2.51e-03 65_[+3(2.50e-05)]_28_[+1(2.62e-05)]_\ 11 chr2R:8656222-8656342 1.14e-01 120 chrX:18310709-18310829 1.15e-01 120 chr2R:13194933-13195053 3.52e-01 120 chrX:693198-693318 1.22e-01 120 chr3R:31697755-31697875 7.87e-02 120 chr2L:3587975-3588095 6.85e-03 86_[+1(6.64e-05)]_26 chr2R:16374225-16374345 1.97e-01 120 chr2R:14429559-14429679 1.80e-02 35_[+1(2.62e-05)]_77 chrX:369991-370111 4.45e-01 120 chr3L:22699298-22699418 3.76e-04 52_[+2(3.35e-05)]_7_[+1(2.62e-05)]_\ 45 chr3R:26010374-26010494 9.83e-02 120 chrX:12217015-12217135 3.58e-02 7_[+5(2.12e-05)]_94_[+5(2.12e-05)]_\ 3 chr3R:8171339-8171459 2.02e-01 120 chr3R:4867752-4867872 1.05e-01 120 chr3L:2711766-2711886 1.28e-01 120 chr2L:18920350-18920470 4.51e-04 82_[+3(1.24e-05)]_30 chr2L:4370125-4370245 3.14e-03 38_[+1(1.26e-05)]_74 chr4:1090564-1090684 4.53e-02 120 chr3L:297289-297409 9.96e-03 120 chr3R:22161765-22161885 1.73e-01 120 chr3R:19330110-19330230 4.24e-04 60_[+1(2.62e-05)]_52 chr2R:8245266-8245386 1.64e-02 78_[+1(2.62e-05)]_34 chr2R:21049057-21049177 7.52e-03 71_[+1(4.02e-05)]_15_[+1(6.64e-05)]_\ 18 chrX:3862158-3862278 2.11e-02 40_[+1(1.26e-05)]_72 chr3R:10514394-10514514 5.24e-01 120 chr2R:23208886-23209006 2.21e-03 43_[+1(1.26e-05)]_69 chr2L:3835729-3835849 3.34e-03 47_[+1(1.26e-05)]_65 chr3L:9015371-9015491 1.99e-02 13_[+5(2.12e-05)]_99 chr3L:13409608-13409728 3.00e-02 106_[+1(6.64e-05)]_6 chrX:10116573-10116693 2.24e-03 101_[+2(9.96e-05)]_11 chr3L:22998244-22998364 1.01e-02 5_[+1(1.26e-05)]_107 chr2L:17264250-17264370 4.95e-02 120 chrX:457151-457271 1.50e-01 120 chr3R:8135232-8135352 1.19e-01 60_[+1(6.64e-05)]_52 chr3L:18225566-18225686 1.32e-01 120 chr3R:25629575-25629695 8.22e-03 2_[+1(1.26e-05)]_78_[+1(1.26e-05)]_\ 24 chrX:16427071-16427191 3.92e-04 60_[+3(2.50e-05)]_14_[+1(1.26e-05)]_\ 30 chrX:399885-400005 9.01e-02 120 chr2R:25204997-25205117 2.00e-01 120 chr3R:8704798-8704918 3.30e-04 29_[+5(4.10e-05)]_68_[+4(1.96e-05)]_\ 7 chr3L:21066740-21066860 3.27e-04 85_[+3(6.43e-05)]_27 chr2L:21368931-21369051 3.08e-02 120 chr2R:22681759-22681879 3.69e-01 120 chr2L:21630720-21630840 5.72e-02 1_[+2(5.14e-05)]_111 chr2L:393586-393706 1.37e-03 28_[+2(1.73e-05)]_44_[+4(1.96e-05)]_\ 32 chrX:15674703-15674823 6.62e-03 83_[+1(9.40e-05)]_29 chr3L:11001540-11001660 1.48e-02 75_[+3(3.83e-05)]_37 chr3R:6983827-6983947 1.60e-01 120 chr4:833166-833286 9.70e-02 120 chr3L:13216204-13216324 1.66e-01 120 chr2R:24986452-24986572 2.50e-02 120 chr2R:12776156-12776276 2.92e-02 30_[+3(7.77e-05)]_82 chrX:18867137-18867257 1.79e-04 10_[+4(3.72e-05)]_102 chrX:382989-383109 6.14e-04 40_[+1(6.64e-05)]_22_[+5(8.27e-05)]_\ 42 chr3R:9038175-9038295 1.59e-02 47_[+1(2.62e-05)]_65 chr2L:712812-712932 8.95e-03 55_[+2(1.73e-05)]_57 chr3L:4233177-4233297 1.42e-03 20_[+3(6.43e-05)]_39_[+1(6.64e-05)]_\ 45 chr3L:5860826-5860946 5.91e-02 99_[+1(4.02e-05)]_13 chrX:19842464-19842584 1.68e-02 120 chr3L:1358468-1358588 3.79e-01 120 chr3L:14189507-14189627 1.12e-03 120 chr3R:22164475-22164595 8.96e-06 54_[+1(1.26e-05)]_47_[+4(7.67e-05)]_\ 3 chr2L:20934814-20934934 3.88e-02 44_[+5(2.12e-05)]_68 chr3L:12506152-12506272 6.60e-02 76_[+1(7.90e-05)]_36 chr2L:8266869-8266989 2.03e-03 49_[+3(3.83e-05)]_63 chr2R:16807013-16807133 3.90e-03 111_[+1(1.26e-05)]_1 chr3R:4987705-4987825 1.64e-02 41_[+3(3.83e-05)]_71 chr3R:6886344-6886464 1.17e-02 120 chr3L:5856092-5856212 1.99e-03 49_[+1(6.64e-05)]_63 chr3R:11354609-11354729 7.39e-04 52_[+5(4.10e-05)]_35_[+1(6.64e-05)]_\ 17 chr2R:22593484-22593604 4.28e-03 40_[+1(4.02e-05)]_72 chr3R:12113834-12113954 3.96e-02 120 chr2L:4375133-4375253 2.23e-02 33_[+1(7.90e-05)]_79 chr2R:13196237-13196357 1.91e-01 120 chr3L:20926741-20926861 1.64e-01 120 chr3R:29532392-29532512 4.45e-02 120 chr3R:16905018-16905138 2.55e-02 48_[+4(1.96e-05)]_64 chr3L:13259758-13259878 2.43e-01 120 chrX:18298044-18298164 3.73e-02 120 chrX:4562117-4562237 9.46e-03 120 chrX:401561-401681 2.45e-01 120 chr2L:1448281-1448401 1.07e-03 [+3(6.43e-05)]_112 chr3L:20667528-20667648 2.74e-02 120 chrX:7096069-7096189 2.62e-05 39_[+1(1.26e-05)]_48_[+2(1.73e-05)]_\ 6_[+3(2.50e-05)]_3 chr2R:7486432-7486552 2.63e-03 94_[+3(2.50e-05)]_18 chr2L:21345843-21345963 2.04e-04 33_[+3(1.24e-05)]_14_[+1(6.64e-05)]_\ 57 chr2R:18672241-18672361 3.16e-03 13_[+3(6.43e-05)]_16_[+1(1.26e-05)]_\ 75 chrX:19788061-19788181 2.37e-01 120 chrX:451193-451313 4.74e-04 49_[+1(1.26e-05)]_39_[+3(1.24e-05)]_\ 16 chr3L:1462567-1462687 6.75e-01 120 chr2R:11085478-11085598 1.44e-02 33_[+4(3.72e-05)]_79 chr2L:17564693-17564813 1.27e-01 120 chr3L:10966812-10966932 2.24e-03 96_[+1(1.26e-05)]_16 chr3R:25596525-25596645 2.55e-02 [+1(1.26e-05)]_36_[+1(4.02e-05)]_68 chr3R:25999433-25999553 1.16e-04 24_[+2(9.96e-05)]_9_[+3(2.50e-05)]_\ 56_[+3(1.24e-05)]_7 chr3L:13105873-13105993 1.07e-02 36_[+1(6.64e-05)]_76 chr3L:18138375-18138495 9.38e-04 48_[+1(4.02e-05)]_12_[+2(5.14e-05)]_\ 44 chr3R:21534749-21534869 8.80e-04 30_[+4(7.67e-05)]_20_[+5(2.12e-05)]_\ 54 chr2L:16477717-16477837 3.52e-03 68_[+1(4.02e-05)]_44 chrX:7574071-7574191 7.39e-02 120 chr2L:20972020-20972140 7.40e-03 59_[+5(2.12e-05)]_53 chr3R:29073139-29073259 4.64e-03 78_[+1(2.62e-05)]_34 chr3R:5761055-5761175 1.63e-03 41_[+2(1.73e-05)]_60_[+5(2.12e-05)]_\ 3 chr3L:3848594-3848714 4.05e-04 94_[+2(3.35e-05)]_18 chr2L:17263440-17263560 1.11e-02 120 chr3L:16473215-16473335 5.67e-03 57_[+1(6.64e-05)]_55 chr2L:17222236-17222356 1.60e-01 120 chr2L:17296351-17296471 3.06e-04 10_[+4(1.96e-05)]_39_[+2(3.35e-05)]_\ 4_[+2(3.35e-05)]_23_[+2(3.35e-05)]_12 chr3R:19345340-19345460 3.64e-01 120 chr3R:4866206-4866326 8.13e-02 120 chr2L:9988348-9988468 5.48e-02 120 chr3L:21455317-21455437 6.29e-02 120 chrX:4584213-4584333 1.69e-01 120 chr2L:7049878-7049998 1.06e-02 47_[+1(1.26e-05)]_65 chr2R:9490943-9491063 1.08e-01 120 chr2L:14579624-14579744 8.82e-02 22_[+4(1.96e-05)]_90 chr3R:8326903-8327023 2.30e-01 120 chr3R:4350478-4350598 4.55e-02 44_[+3(7.77e-05)]_68 chr2L:15741622-15741742 1.99e-02 120 chr3L:16012995-16013115 1.82e-01 32_[+1(6.64e-05)]_80 chr2L:8282012-8282132 1.78e-01 120 chrX:19432234-19432354 7.34e-03 35_[+3(7.77e-05)]_49_[+1(1.26e-05)]_\ 20 chr2R:15910337-15910457 5.86e-03 30_[+1(6.64e-05)]_23_[+3(6.43e-05)]_\ 51 chr2L:5870974-5871094 1.40e-02 12_[+3(2.50e-05)]_100 chr3R:22633077-22633197 7.73e-03 46_[+3(6.43e-05)]_13_[+1(4.02e-05)]_\ 45 chr2R:11794202-11794322 7.87e-01 120 chr3R:17816515-17816635 2.56e-01 37_[+2(3.35e-05)]_9_[+2(3.35e-05)]_\ 58 chr2R:9714729-9714849 1.53e-03 109_[+1(6.64e-05)]_3 chrX:8039185-8039305 1.52e-02 10_[+2(1.73e-05)]_102 chr2L:7526035-7526155 2.17e-01 120 chr2L:1410915-1411035 1.53e-01 120 chr3L:4992285-4992405 2.53e-01 88_[+2(6.76e-05)]_24 chr3L:15665851-15665971 9.71e-02 120 chr2L:7308976-7309096 1.23e-04 2_[+3(3.83e-05)]_5_[+5(2.12e-05)]_\ 97 chr2L:8548277-8548397 2.43e-02 69_[+2(1.73e-05)]_43 chr2R:19267321-19267441 8.80e-02 120 chr2L:21865578-21865698 2.31e-01 120 chr3L:13135039-13135159 2.95e-02 87_[+5(4.10e-05)]_25 chr3R:19353140-19353260 3.65e-01 120 chr2R:20604149-20604269 2.93e-03 45_[+1(2.62e-05)]_67 chrX:20753262-20753382 3.15e-01 120 chr2R:25198609-25198729 3.36e-03 35_[+1(2.62e-05)]_77 chr3L:22162645-22162765 1.59e-01 47_[+2(5.14e-05)]_65 chr3R:5125105-5125225 3.89e-02 9_[+2(6.76e-05)]_103 chr3L:7371608-7371728 1.33e-02 80_[+4(1.96e-05)]_32 chr2L:8847504-8847624 2.17e-04 34_[+1(1.26e-05)]_78 chr2R:13195137-13195257 6.13e-01 120 chr2L:3577605-3577725 4.80e-02 23_[+4(1.96e-05)]_89 chr2L:1447456-1447576 2.54e-01 120 chr2L:6462541-6462661 4.09e-02 120 chr2R:15886489-15886609 4.10e-01 120 chr3R:5056217-5056337 2.37e-03 120 chr2L:11419048-11419168 1.13e-02 120 chr2R:13570135-13570255 8.38e-02 120 chr3R:29547605-29547725 4.51e-02 120 chr3R:4847575-4847695 2.81e-01 120 chr2L:20995913-20996033 1.63e-02 23_[+2(3.35e-05)]_89 chr2R:11742396-11742516 7.20e-04 13_[+4(3.72e-05)]_99 chr3R:16187972-16188092 7.17e-05 8_[+5(8.27e-05)]_56_[+1(4.02e-05)]_\ 40 chr3R:13724442-13724562 3.00e-03 2_[+2(8.44e-05)]_67_[+3(3.83e-05)]_\ 35 chr2R:15132391-15132511 1.56e-03 75_[+1(1.26e-05)]_37 chr3L:12676910-12677030 9.90e-03 108_[+2(1.73e-05)]_4 chr2R:11812316-11812436 9.51e-01 120 chrX:8294756-8294876 2.79e-01 101_[+5(8.27e-05)]_11 chr2R:20311655-20311775 6.60e-01 120 chr3L:2867926-2868046 4.67e-02 120 chr2R:14433302-14433422 4.97e-05 91_[+1(1.26e-05)]_4_[+2(1.73e-05)]_\ 9 chr2L:21105245-21105365 1.14e-03 81_[+2(1.73e-05)]_31 chr3R:21640474-21640594 1.40e-03 56_[+1(4.02e-05)]_56 chrX:9729720-9729840 5.46e-03 26_[+2(3.35e-05)]_24_[+2(1.73e-05)]_\ 31_[+2(3.35e-05)]_15 chr3R:4875351-4875471 8.59e-07 11_[+3(6.43e-05)]_23_[+5(4.10e-05)]_\ 15_[+4(7.67e-05)]_47 chr3L:16049199-16049319 2.95e-03 45_[+1(1.26e-05)]_67 chr3R:26024699-26024819 2.53e-04 32_[+3(1.24e-05)]_80 chr2R:25044872-25044992 1.52e-03 90_[+2(1.73e-05)]_22 chr3L:3882169-3882289 4.04e-01 120 chr2R:6515914-6516034 3.75e-02 120 chr2L:11470162-11470282 1.00e-02 91_[+1(1.26e-05)]_21 chr3R:24604207-24604327 6.85e-03 111_[+4(3.72e-05)]_1 chr2L:16643556-16643676 6.54e-04 38_[+3(1.24e-05)]_74 chr3R:25636781-25636901 9.49e-01 120 chr3R:26018493-26018613 3.05e-03 62_[+1(4.02e-05)]_50 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************