******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/abd-A.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:16791758-16791878 1.0000 120 chr3R:16755013-16755133 1.0000 120 chr2L:14411236-14411356 1.0000 120 chr2R:21459035-21459155 1.0000 120 chr2R:6983600-6983720 1.0000 120 chr3L:19229663-19229783 1.0000 120 chr2R:13029431-13029551 1.0000 120 chr3R:16804225-16804345 1.0000 120 chr3R:10493660-10493780 1.0000 120 chr2L:10682327-10682447 1.0000 120 chr3L:3706944-3707064 1.0000 120 chrX:5206291-5206411 1.0000 120 chr3L:6508222-6508342 1.0000 120 chr2R:22532480-22532600 1.0000 120 chr2R:14682002-14682122 1.0000 120 chr3R:29005364-29005484 1.0000 120 chr3R:11551210-11551330 1.0000 120 chrX:15199984-15200104 1.0000 120 chr3R:16840901-16841021 1.0000 120 chr3R:31826538-31826658 1.0000 120 chr2L:13457166-13457286 1.0000 120 chr2L:9131105-9131225 1.0000 120 chr3R:16765241-16765361 1.0000 120 chr3L:9046413-9046533 1.0000 120 chr3R:26594277-26594397 1.0000 120 chr3R:16817604-16817724 1.0000 120 chr3L:3641055-3641175 1.0000 120 chr3R:16792725-16792845 1.0000 120 chr3L:9188761-9188881 1.0000 120 chr3R:23649970-23650090 1.0000 120 chr3L:9856958-9857078 1.0000 120 chr3R:20678564-20678684 1.0000 120 chr3L:18640319-18640439 1.0000 120 chr3L:7217979-7218099 1.0000 120 chr2R:10996776-10996896 1.0000 120 chr3R:5801815-5801935 1.0000 120 chr2L:17770194-17770314 1.0000 120 chr2R:24274192-24274312 1.0000 120 chr3R:9140284-9140404 1.0000 120 chr3L:7070958-7071078 1.0000 120 chr3R:10440565-10440685 1.0000 120 chr3R:18955778-18955898 1.0000 120 chr3R:27134118-27134238 1.0000 120 chr3R:12146162-12146282 1.0000 120 chr2L:14121733-14121853 1.0000 120 chr3R:29613464-29613584 1.0000 120 chr2R:21806037-21806157 1.0000 120 chr3L:3857594-3857714 1.0000 120 chr3R:25755957-25756077 1.0000 120 chr3R:15471061-15471181 1.0000 120 chr3L:19214361-19214481 1.0000 120 chr3R:25710784-25710904 1.0000 120 chr3R:20052365-20052485 1.0000 120 chrX:1550765-1550885 1.0000 120 chr2L:11357058-11357178 1.0000 120 chr3L:11399598-11399718 1.0000 120 chr3L:6348336-6348456 1.0000 120 chrX:5095351-5095471 1.0000 120 chr3R:17918316-17918436 1.0000 120 chr3L:17941155-17941275 1.0000 120 chr3L:19231719-19231839 1.0000 120 chr3L:4602270-4602390 1.0000 120 chr3L:7217000-7217120 1.0000 120 chr2L:12567927-12568047 1.0000 120 chr3R:17849625-17849745 1.0000 120 chr2R:8383087-8383207 1.0000 120 chr3L:10832773-10832893 1.0000 120 chr3L:10727244-10727364 1.0000 120 chr3L:1423728-1423848 1.0000 120 chr3R:26675850-26675970 1.0000 120 chr3R:16746147-16746267 1.0000 120 chr3L:17438650-17438770 1.0000 120 chr2R:21880060-21880180 1.0000 120 chrX:18982296-18982416 1.0000 120 chr2L:13698210-13698330 1.0000 120 chr3R:16796852-16796972 1.0000 120 chr3R:15560305-15560425 1.0000 120 chr2R:17511226-17511346 1.0000 120 chr2L:20907306-20907426 1.0000 120 chr3R:26494057-26494177 1.0000 120 chr2R:15920648-15920768 1.0000 120 chr3L:6290765-6290885 1.0000 120 chr3L:6032616-6032736 1.0000 120 chr2L:5564271-5564391 1.0000 120 chr3L:6044989-6045109 1.0000 120 chr3R:12052502-12052622 1.0000 120 chrX:12074048-12074168 1.0000 120 chrX:14445285-14445405 1.0000 120 chr3R:21697298-21697418 1.0000 120 chr3L:17312994-17313114 1.0000 120 chr2L:3536628-3536748 1.0000 120 chr3L:4442293-4442413 1.0000 120 chr3L:17163212-17163332 1.0000 120 chr3R:12603940-12604060 1.0000 120 chr2L:4018140-4018260 1.0000 120 chr3R:20462817-20462937 1.0000 120 chr3R:19749708-19749828 1.0000 120 chr2L:1279901-1280021 1.0000 120 chr2L:2015667-2015787 1.0000 120 chr3L:10718373-10718493 1.0000 120 chr2R:8758720-8758840 1.0000 120 chr3R:11510694-11510814 1.0000 120 chr2L:3593471-3593591 1.0000 120 chr2R:13095649-13095769 1.0000 120 chr3L:17399119-17399239 1.0000 120 chr2L:3738415-3738535 1.0000 120 chr2R:11073006-11073126 1.0000 120 chr3R:9976867-9976987 1.0000 120 chr2L:19202683-19202803 1.0000 120 chr2L:6202989-6203109 1.0000 120 chr3R:26531389-26531509 1.0000 120 chr2R:9316367-9316487 1.0000 120 chr3R:16531842-16531962 1.0000 120 chr3L:10372869-10372989 1.0000 120 chr3L:13002568-13002688 1.0000 120 chr3R:22279470-22279590 1.0000 120 chr3R:12600865-12600985 1.0000 120 chrX:1264766-1264886 1.0000 120 chr3R:8426783-8426903 1.0000 120 chr2L:12149782-12149902 1.0000 120 chr3R:30089107-30089227 1.0000 120 chr3R:5424100-5424220 1.0000 120 chr3L:21859443-21859563 1.0000 120 chr3L:21294348-21294468 1.0000 120 chr2L:14125766-14125886 1.0000 120 chr3R:16800324-16800444 1.0000 120 chr3R:6568983-6569103 1.0000 120 chr3L:4000359-4000479 1.0000 120 chr3R:9852123-9852243 1.0000 120 chr3R:12827697-12827817 1.0000 120 chr2R:12252416-12252536 1.0000 120 chr3L:6778938-6779058 1.0000 120 chr3R:20404127-20404247 1.0000 120 chr3R:16842676-16842796 1.0000 120 chrX:10418964-10419084 1.0000 120 chr3L:5395440-5395560 1.0000 120 chr3L:17096338-17096458 1.0000 120 chr2L:14948601-14948721 1.0000 120 chr3L:3849890-3850010 1.0000 120 chr3R:16785195-16785315 1.0000 120 chr3R:19727947-19728067 1.0000 120 chr3L:2422932-2423052 1.0000 120 chr3L:10339695-10339815 1.0000 120 chr3R:16801552-16801672 1.0000 120 chrX:6376114-6376234 1.0000 120 chr2R:15105055-15105175 1.0000 120 chr2R:17333758-17333878 1.0000 120 chr3L:17279049-17279169 1.0000 120 chr3L:5484192-5484312 1.0000 120 chr2L:3603694-3603814 1.0000 120 chr3L:3102773-3102893 1.0000 120 chr3R:16781135-16781255 1.0000 120 chr2R:17168262-17168382 1.0000 120 chr3L:1146614-1146734 1.0000 120 chr3R:9234912-9235032 1.0000 120 chr2R:21358418-21358538 1.0000 120 chr2L:22075453-22075573 1.0000 120 chr3R:16806280-16806400 1.0000 120 chrX:19452587-19452707 1.0000 120 chr2R:11998379-11998499 1.0000 120 chr2R:13659609-13659729 1.0000 120 chr3R:13800179-13800299 1.0000 120 chr3R:13149939-13150059 1.0000 120 chr3R:17862402-17862522 1.0000 120 chr2L:7442268-7442388 1.0000 120 chrX:1727996-1728116 1.0000 120 chr2R:18482188-18482308 1.0000 120 chr2L:3933813-3933933 1.0000 120 chr2L:20587698-20587818 1.0000 120 chr3R:27213120-27213240 1.0000 120 chr3L:6505439-6505559 1.0000 120 chr2R:5851557-5851677 1.0000 120 chr3R:21793861-21793981 1.0000 120 chr2R:6805549-6805669 1.0000 120 chrX:21575937-21576057 1.0000 120 chr3R:9492253-9492373 1.0000 120 chr3R:6629621-6629741 1.0000 120 chr3R:13612636-13612756 1.0000 120 chr2L:8840839-8840959 1.0000 120 chr3L:17106631-17106751 1.0000 120 chr3R:9837308-9837428 1.0000 120 chr2L:19923906-19924026 1.0000 120 chr2L:20536627-20536747 1.0000 120 chr2L:135508-135628 1.0000 120 chrX:14331956-14332076 1.0000 120 chr3R:12879330-12879450 1.0000 120 chr3L:17112952-17113072 1.0000 120 chr3L:20166624-20166744 1.0000 120 chr2R:15030125-15030245 1.0000 120 chr3R:17333797-17333917 1.0000 120 chrX:15436999-15437119 1.0000 120 chr2L:7850545-7850665 1.0000 120 chr2L:10601383-10601503 1.0000 120 chr3R:16822733-16822853 1.0000 120 chr3R:13907474-13907594 1.0000 120 chr2L:1044226-1044346 1.0000 120 chr3R:16834433-16834553 1.0000 120 chr3R:16777445-16777565 1.0000 120 chr2R:14131483-14131603 1.0000 120 chr2L:14138804-14138924 1.0000 120 chr3R:28042984-28043104 1.0000 120 chrX:1405913-1406033 1.0000 120 chr3L:11920624-11920744 1.0000 120 chr3R:7034567-7034687 1.0000 120 chr3R:25539307-25539427 1.0000 120 chrX:14167615-14167735 1.0000 120 chrX:542227-542347 1.0000 120 chr2R:15804606-15804726 1.0000 120 chr2R:18331961-18332081 1.0000 120 chr2R:13628483-13628603 1.0000 120 chr3L:11015344-11015464 1.0000 120 chr2L:966841-966961 1.0000 120 chr3L:15312105-15312225 1.0000 120 chr3L:1170736-1170856 1.0000 120 chr3R:6767095-6767215 1.0000 120 chr2L:6885306-6885426 1.0000 120 chr3L:19226354-19226474 1.0000 120 chr2R:9905289-9905409 1.0000 120 chr2L:698695-698815 1.0000 120 chr3L:20176327-20176447 1.0000 120 chr3R:21437631-21437751 1.0000 120 chr2L:20051283-20051403 1.0000 120 chr3L:6379430-6379550 1.0000 120 chr2L:21870259-21870379 1.0000 120 chr2L:14477603-14477723 1.0000 120 chr2L:4276855-4276975 1.0000 120 chr2R:7689886-7690006 1.0000 120 chr2L:6706502-6706622 1.0000 120 chr2L:16919157-16919277 1.0000 120 chr2R:18373073-18373193 1.0000 120 chr2L:13066022-13066142 1.0000 120 chr3R:16787517-16787637 1.0000 120 chr3L:6539663-6539783 1.0000 120 chr2L:15118646-15118766 1.0000 120 chrX:10184503-10184623 1.0000 120 chr2L:19843124-19843244 1.0000 120 chr2L:1691160-1691280 1.0000 120 chr3R:24457999-24458119 1.0000 120 chr2L:5628739-5628859 1.0000 120 chr3R:6771936-6772056 1.0000 120 chr3R:13253779-13253899 1.0000 120 chr2L:7284254-7284374 1.0000 120 chrX:2361397-2361517 1.0000 120 chr3R:15451761-15451881 1.0000 120 chr3R:18964972-18965092 1.0000 120 chr2L:15796439-15796559 1.0000 120 chr2R:24225421-24225541 1.0000 120 chr3R:16832063-16832183 1.0000 120 chrX:1504341-1504461 1.0000 120 chr3R:16794707-16794827 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_abd-A/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/abd-A.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.267 C 0.234 G 0.224 T 0.275 Background letter frequencies (from file dataset with add-one prior applied): A 0.267 C 0.234 G 0.224 T 0.274 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CACACAMA MEME-1 width = 8 sites = 47 llr = 403 E-value = 6.1e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACAMA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :919:93a pos.-specific C 9:9:a:6: probability G :1:::1:: matrix T 1::1:::: bits 2.2 * 1.9 * * 1.7 * * * 1.5 * * ** * Relative 1.3 ****** * Entropy 1.1 ****** * (12.4 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAMA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:13253779-13253899 104 1.52e-05 AGGGCTTaca cacacaca cgctggcta chr2L:6885306-6885426 9 1.52e-05 gcacacac cacacaca gacacaatcg chr2L:966841-966961 47 1.52e-05 GTCCTTCGCA CACACACA CACTGGCACC chr3R:25539307-25539427 6 1.52e-05 ATaca cacacaca cacacaccag chr2R:14131483-14131603 62 1.52e-05 AGGCTATGAG CACACACA AACTCCAGCT chr3R:12879330-12879450 98 1.52e-05 CCTAAACGCC CACACACA CCACCCCGTC chr3R:20404127-20404247 26 1.52e-05 GCCGGAGACG CACACACA CTCATTGGGA chr3L:10718373-10718493 38 1.52e-05 TCAGTCAGCG CACACACA TATTTTCCTT chr2L:2015667-2015787 10 1.52e-05 accctcaca cacacaca ctcacacaca chrX:12074048-12074168 108 1.52e-05 GCAGGGCGca cacacaca cacac chr2L:12567927-12568047 112 1.52e-05 CCCTCCcaca cacacaca c chr3R:25710784-25710904 54 1.52e-05 cacagacacG CACACACA CTGGCGCATT chr3R:25755957-25756077 48 1.52e-05 GGCCAAACTT CACACACA ATACGAGACT chr3L:7217979-7218099 44 1.52e-05 ctgactaaca cacacaca cacacgcaTG chr3R:31826538-31826658 1 1.52e-05 . CACACACA CAAAGGCGGA chr2R:13029431-13029551 111 1.52e-05 CTAGCTCGca cacacaca ca chr2R:18373073-18373193 42 3.26e-05 TTATTGCTGA CACACAAA CACAGGAAGC chr3L:6379430-6379550 24 3.26e-05 TCACGCTTTT CACACAAA ATTAATGCAA chr2L:20051283-20051403 73 3.26e-05 ATTTGTGTGT CACACAAA TAAGGGGCGA chr3R:21793861-21793981 107 3.26e-05 CAGACCCACG CACACAAA CACAGG chr2L:20587698-20587818 41 3.26e-05 GGCGTGAGTC CACACAAA CAAACCCGGC chr2R:8383087-8383207 91 3.26e-05 AAATTAAAGG CACACAAA AAGTGGAAAA chr2R:5851557-5851677 6 4.83e-05 CAGTA CACTCACA GATACCGTAC chr2R:10996776-10996896 4 4.83e-05 tac cactcaca ggccattcca chr2L:4276855-4276975 75 7.38e-05 CACACACGCA CGCACACA AGGACGAGGA chrX:15436999-15437119 112 7.38e-05 CCAAGAGACG CGCACACA T chr2R:6805549-6805669 19 7.38e-05 CGCTCCAACG CACACGCA TTGGATTACA chr2R:9316367-9316487 33 7.38e-05 atccccatcc cacaCGCA TACGTACACA chr2R:15920648-15920768 20 7.38e-05 AGCCCGCCCG CACACGCA CTCGATGATT chr3L:6508222-6508342 51 7.38e-05 AATGCGTTAA CGCACACA GACTCACCGA chr2R:15105055-15105175 38 9.17e-05 AATATTTTAT TACACACA TTTATGACGC chr3L:1423728-1423848 47 9.17e-05 TATCTAGGAT TACACACA GACCCCACAC chr2R:15804606-15804726 63 1.10e-04 CCACCGAAGA CACTCAAA GTGGAAGTAA chrX:14167615-14167735 61 1.10e-04 TTAATTACAG CACTCAAA GCATAAATTT chr3R:17333797-17333917 28 1.10e-04 CCTAACAAGG CACTCAAA AATTTTTTAT chr3R:16842676-16842796 5 1.10e-04 GTCA CACTCAAA ATTTGGGCTG chr2L:7442268-7442388 33 1.27e-04 AAGACCAAGT CAAACACA AAGGCCCAAA chrX:15199984-15200104 39 1.27e-04 GCAAGTTAGA CAAACACA TTGAGTGCCC chr2L:13698210-13698330 29 1.45e-04 CACACATTGG CACACATA AAACAACACT chr2R:14682002-14682122 26 1.45e-04 TTCCTTGGGC CACACATA AAAGCAATTT chr3R:6771936-6772056 35 1.74e-04 CCCGCCCCTG CGCACAAA GCCCCCTCTG chrX:2361397-2361517 16 1.94e-04 AACGAGAATT TACACAAA ATCATATGTA chr3L:20176327-20176447 46 1.94e-04 GCCAGGCCAA TACACAAA TCGATCGCTG chrX:542227-542347 37 1.94e-04 TCGTCTATTT TACACAAA TTATTTTGAA chr2R:12252416-12252536 57 2.27e-04 ATGTGAACCA CAAACAAA TTTATAGCTG chr2L:4018140-4018260 56 2.27e-04 GGCAGCCACG CCCACACA TGAAATGGAA chr3R:16755013-16755133 84 2.54e-04 GCGCCCAAAA CACTCGCA TATATTCGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAMA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:13253779-13253899 1.5e-05 103_[+1]_9 chr2L:6885306-6885426 1.5e-05 8_[+1]_104 chr2L:966841-966961 1.5e-05 46_[+1]_66 chr3R:25539307-25539427 1.5e-05 5_[+1]_107 chr2R:14131483-14131603 1.5e-05 61_[+1]_51 chr3R:12879330-12879450 1.5e-05 97_[+1]_15 chr3R:20404127-20404247 1.5e-05 25_[+1]_87 chr3L:10718373-10718493 1.5e-05 37_[+1]_75 chr2L:2015667-2015787 1.5e-05 9_[+1]_103 chrX:12074048-12074168 1.5e-05 107_[+1]_5 chr2L:12567927-12568047 1.5e-05 111_[+1]_1 chr3R:25710784-25710904 1.5e-05 53_[+1]_59 chr3R:25755957-25756077 1.5e-05 47_[+1]_65 chr3L:7217979-7218099 1.5e-05 43_[+1]_69 chr3R:31826538-31826658 1.5e-05 [+1]_112 chr2R:13029431-13029551 1.5e-05 110_[+1]_2 chr2R:18373073-18373193 3.3e-05 41_[+1]_71 chr3L:6379430-6379550 3.3e-05 23_[+1]_89 chr2L:20051283-20051403 3.3e-05 72_[+1]_40 chr3R:21793861-21793981 3.3e-05 106_[+1]_6 chr2L:20587698-20587818 3.3e-05 40_[+1]_72 chr2R:8383087-8383207 3.3e-05 90_[+1]_22 chr2R:5851557-5851677 4.8e-05 5_[+1]_107 chr2R:10996776-10996896 4.8e-05 3_[+1]_109 chr2L:4276855-4276975 7.4e-05 74_[+1]_38 chrX:15436999-15437119 7.4e-05 111_[+1]_1 chr2R:6805549-6805669 7.4e-05 18_[+1]_94 chr2R:9316367-9316487 7.4e-05 32_[+1]_80 chr2R:15920648-15920768 7.4e-05 19_[+1]_93 chr3L:6508222-6508342 7.4e-05 50_[+1]_62 chr2R:15105055-15105175 9.2e-05 37_[+1]_75 chr3L:1423728-1423848 9.2e-05 46_[+1]_66 chr2R:15804606-15804726 0.00011 62_[+1]_50 chrX:14167615-14167735 0.00011 60_[+1]_52 chr3R:17333797-17333917 0.00011 27_[+1]_85 chr3R:16842676-16842796 0.00011 4_[+1]_108 chr2L:7442268-7442388 0.00013 32_[+1]_80 chrX:15199984-15200104 0.00013 38_[+1]_74 chr2L:13698210-13698330 0.00014 28_[+1]_84 chr2R:14682002-14682122 0.00014 25_[+1]_87 chr3R:6771936-6772056 0.00017 34_[+1]_78 chrX:2361397-2361517 0.00019 15_[+1]_97 chr3L:20176327-20176447 0.00019 45_[+1]_67 chrX:542227-542347 0.00019 36_[+1]_76 chr2R:12252416-12252536 0.00023 56_[+1]_56 chr2L:4018140-4018260 0.00023 55_[+1]_57 chr3R:16755013-16755133 0.00025 83_[+1]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAMA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACAMA width=8 seqs=47 chr3R:13253779-13253899 ( 104) CACACACA 1 chr2L:6885306-6885426 ( 9) CACACACA 1 chr2L:966841-966961 ( 47) CACACACA 1 chr3R:25539307-25539427 ( 6) CACACACA 1 chr2R:14131483-14131603 ( 62) CACACACA 1 chr3R:12879330-12879450 ( 98) CACACACA 1 chr3R:20404127-20404247 ( 26) CACACACA 1 chr3L:10718373-10718493 ( 38) CACACACA 1 chr2L:2015667-2015787 ( 10) CACACACA 1 chrX:12074048-12074168 ( 108) CACACACA 1 chr2L:12567927-12568047 ( 112) CACACACA 1 chr3R:25710784-25710904 ( 54) CACACACA 1 chr3R:25755957-25756077 ( 48) CACACACA 1 chr3L:7217979-7218099 ( 44) CACACACA 1 chr3R:31826538-31826658 ( 1) CACACACA 1 chr2R:13029431-13029551 ( 111) CACACACA 1 chr2R:18373073-18373193 ( 42) CACACAAA 1 chr3L:6379430-6379550 ( 24) CACACAAA 1 chr2L:20051283-20051403 ( 73) CACACAAA 1 chr3R:21793861-21793981 ( 107) CACACAAA 1 chr2L:20587698-20587818 ( 41) CACACAAA 1 chr2R:8383087-8383207 ( 91) CACACAAA 1 chr2R:5851557-5851677 ( 6) CACTCACA 1 chr2R:10996776-10996896 ( 4) CACTCACA 1 chr2L:4276855-4276975 ( 75) CGCACACA 1 chrX:15436999-15437119 ( 112) CGCACACA 1 chr2R:6805549-6805669 ( 19) CACACGCA 1 chr2R:9316367-9316487 ( 33) CACACGCA 1 chr2R:15920648-15920768 ( 20) CACACGCA 1 chr3L:6508222-6508342 ( 51) CGCACACA 1 chr2R:15105055-15105175 ( 38) TACACACA 1 chr3L:1423728-1423848 ( 47) TACACACA 1 chr2R:15804606-15804726 ( 63) CACTCAAA 1 chrX:14167615-14167735 ( 61) CACTCAAA 1 chr3R:17333797-17333917 ( 28) CACTCAAA 1 chr3R:16842676-16842796 ( 5) CACTCAAA 1 chr2L:7442268-7442388 ( 33) CAAACACA 1 chrX:15199984-15200104 ( 39) CAAACACA 1 chr2L:13698210-13698330 ( 29) CACACATA 1 chr2R:14682002-14682122 ( 26) CACACATA 1 chr3R:6771936-6772056 ( 35) CGCACAAA 1 chrX:2361397-2361517 ( 16) TACACAAA 1 chr3L:20176327-20176447 ( 46) TACACAAA 1 chrX:542227-542347 ( 37) TACACAAA 1 chr2R:12252416-12252536 ( 57) CAAACAAA 1 chr2L:4018140-4018260 ( 56) CCCACACA 1 chr3R:16755013-16755133 ( 84) CACTCGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAMA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3123 E= 6.1e-010 -1220 193 -1220 -137 174 -346 -139 -1220 -207 200 -1220 -1220 167 -1220 -1220 -88 -1220 209 -1220 -1220 177 -1220 -139 -1220 26 145 -1220 -269 190 -1220 -1220 -1220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAMA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 6.1e-010 0.000000 0.893617 0.000000 0.106383 0.893617 0.021277 0.085106 0.000000 0.063830 0.936170 0.000000 0.000000 0.851064 0.000000 0.000000 0.148936 0.000000 1.000000 0.000000 0.000000 0.914894 0.000000 0.085106 0.000000 0.319149 0.638298 0.000000 0.042553 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAMA MEME-1 regular expression -------------------------------------------------------------------------------- CACACA[CA]A -------------------------------------------------------------------------------- Time 7.43 secs. ******************************************************************************** ******************************************************************************** MOTIF TKTRTGKG MEME-2 width = 8 sites = 66 llr = 507 E-value = 3.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKTRTGKG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::4:::: pos.-specific C :::1::23 probability G :5:5:a37 matrix T a5a:a:5: bits 2.2 * 1.9 * ** 1.7 * * ** 1.5 * * ** Relative 1.3 * * ** * Entropy 1.1 *** ** * (11.1 bits) 0.9 *** ** * 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGTGTG consensus G A GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTRTGKG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:15451761-15451881 48 3.15e-05 AAACAAGCGA TTTGTGTG TCAGTCGATT chr2L:5628739-5628859 49 3.15e-05 ttcataggtg tgtgtgtg tgGCTGATTT chr2L:20051283-20051403 64 3.15e-05 GCAAATAAAA TTTGTGTG TCACACAAAT chr3L:1170736-1170856 3 3.15e-05 CC TGTGTGTG TTTGTGAGTT chr2R:13628483-13628603 29 3.15e-05 tgcgcgagtg tgtgtgtg tgtttgtgtg chr3R:28042984-28043104 104 3.15e-05 TGTGCTtgtg tgtgtgtg tgtgtattt chr3R:9492253-9492373 110 3.15e-05 agtgcgaatg tgtgtgtg cga chrX:19452587-19452707 8 3.15e-05 TCCACCT TTTGTGTG CTCAAATCTC chr3L:6778938-6779058 70 3.15e-05 CCTCATCTGG TGTGTGTG TCTGTGTGCT chr3R:19749708-19749828 80 3.15e-05 CAGCCCCATG TGTGTGTG AGTGTGGACT chr3L:6044989-6045109 40 3.15e-05 CACATGTGTG TGTGTGTG TGAATCTGGC chr2L:5564271-5564391 13 3.15e-05 tatgtgtgtg tgtgtgtg gtttctgtTT chr3L:9188761-9188881 112 3.15e-05 tgccagtgtg tgtgtgtg t chr3L:19229663-19229783 109 3.15e-05 AAGCTATAAg tgtgtgtg agcc chr2L:966841-966961 22 5.73e-05 GCCGTGCGTC TGTGTGGG TAAGTAAGTC chrX:15436999-15437119 40 5.73e-05 TGTGTTGGCT TGTGTGGG GGAGAAGCAC chr3L:1146614-1146734 76 5.73e-05 CCTCGCCCGT TTTGTGGG GCAGCTTTTA chr3R:6568983-6569103 89 5.73e-05 TTGGAATGGG TGTGTGGG TGGGTACAAC chr3R:16531842-16531962 35 5.73e-05 GGCTTAGGGT TTTGTGGG ACCATTTGGC chr2L:4018140-4018260 16 5.73e-05 TTTTCCCGCC TTTGTGGG TGGACTTTAA chr2L:20907306-20907426 66 5.73e-05 TATTTGTTCT TGTGTGGG TGTGACAGGA chr2L:7850545-7850665 78 9.49e-05 GGCATTAGGT TTTATGTG GGAATAAACG chr3R:10440565-10440685 67 9.49e-05 CCGCCCGAGC TGTATGTG CATCCTCAAT chr3R:9140284-9140404 23 9.49e-05 CTCTTAGATT TTTATGTG CCTACACATT chr3L:9046413-9046533 22 9.49e-05 TTAATGAATT TTTATGTG TAGGTTGGTC chr2R:14682002-14682122 5 9.49e-05 AAAT TTTATGTG CGCTTCCTTG chr2R:13029431-13029551 47 9.49e-05 AAGTTTACAC TTTATGTG CGTTTGCCGT chrX:12074048-12074168 61 1.26e-04 TTTTGGCCGT TTTATGGG ATTTTGCAAC chr3L:19214361-19214481 81 1.26e-04 CTTCATTACT TTTATGGG GCTGACGGCG chr3R:11551210-11551330 109 1.26e-04 TAAATGAGCC TTTATGGG CTTC chrX:1504341-1504461 38 1.86e-04 CCTACACATC TGTGTGCG TGTGTTTGGA chr3R:7034567-7034687 73 1.86e-04 CACCACCAAA TGTGTGTC TTCATTTTGT chr3L:20166624-20166744 53 1.86e-04 TTAAATTAAA TGTGTGTC TTGCGATAAA chr3R:9852123-9852243 59 1.86e-04 GCTTAGTCGC TGTGTGCG AGCGAGATGG chr3R:8426783-8426903 17 1.86e-04 ACGATGTCGT TTTGTGCG GCTTTCACCT chrX:14445285-14445405 80 1.86e-04 TGCGCACATG TTTGTGTC GTTTTATGGC chr3L:3857594-3857714 47 1.86e-04 AAACTCGTCT TTTGTGCG GCTATTGAAA chr2R:10996776-10996896 81 1.86e-04 CTTGATGTTA TTTGTGCG GCAGAGGCAA chr3R:26594277-26594397 97 1.86e-04 TGTCGTTGTC TGTGTGTC TGATATAAAA chr3L:19226354-19226474 40 2.13e-04 attgccatta tttgtggc ccattattaa chr2R:21459035-21459155 104 2.13e-04 TAGCAGAATG TTTGTGGC CAACATAAA chr2R:18482188-18482308 90 2.84e-04 AATTTCCTTT TTTATGTC TGTCTTTCTG chr2R:11998379-11998499 102 2.84e-04 CTCGTAAAAT TTTATGCG TTTTTTGCGC chr3L:10339695-10339815 3 2.84e-04 TG TGTATGTC TCGGTTGCCT chr3R:9976867-9976987 31 2.84e-04 TACGAAAATA TTTATGTC ATAATTGGAT chr2R:8758720-8758840 8 2.84e-04 TTGATAT TTTATGCG CCCCAATCAT chr3L:3641055-3641175 73 2.84e-04 TATGAGCGAC TTTATGCG CAGCTGTCGC chr2R:7689886-7690006 24 3.49e-04 ACAGTTTGTC TTTATGGC CCATCACAAC chr2L:10601383-10601503 1 3.49e-04 . TTTATGGC TTGAATTTTA chr2R:6805549-6805669 85 3.49e-04 ATGTCTATTT TTTATGGC ACCCCGGGGA chr2R:5851557-5851677 108 3.49e-04 TCCGCTGTGT TTTATGGC CGACA chr3L:5395440-5395560 32 3.49e-04 AGGACCTGGG TGTCTGTG AATAATTTCG chr2R:12252416-12252536 108 3.49e-04 CGGGCCCACA TTTCTGTG AAATC chr2R:11073006-11073126 75 3.49e-04 GTGAAATACG TTTATGGC CACCCTGAGA chr3R:12603940-12604060 46 3.49e-04 ATCCGGCTTG TTTATGGC ACATTCCTAT chrX:18982296-18982416 46 3.49e-04 AAACAGGCAA TTTCTGTG CCGCTCCCCG chr3L:11399598-11399718 68 3.49e-04 TGTTAAGCCA TTTATGGC GTTTTCTCAT chr3L:15312105-15312225 35 4.04e-04 GCGGGGACTT TGTCTGGG GCGTGCCCCT chr2R:18331961-18332081 58 4.04e-04 GGTGACCAAA TGTCTGGG GAGTGAACAA chr3R:16800324-16800444 97 4.04e-04 CAGCGATAAA TTTGTGCC TACGACATCT chr2L:19202683-19202803 12 4.04e-04 TTGGTCCCAC TGTCTGGG TTTAATGCAC chr2R:24225421-24225541 11 4.38e-04 TGCTGTGCTT TTTATGCC CGCCATTTCG chrX:5206291-5206411 18 4.38e-04 GGCTGTGTGC TGTATGCC CAATAAAATT chrX:1727996-1728116 71 5.00e-04 CGTAAGTGGC TGTCTGTC GATGGGCGGC chr2L:14121733-14121853 88 5.00e-04 TTTAATTTGT TGTCTGCG ACGACGAGGA chr3R:26494057-26494177 96 6.05e-04 GGGTAGCTCT TGGGTGGG ATGGATGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTRTGKG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:15451761-15451881 3.2e-05 47_[+2]_65 chr2L:5628739-5628859 3.2e-05 48_[+2]_64 chr2L:20051283-20051403 3.2e-05 63_[+2]_49 chr3L:1170736-1170856 3.2e-05 2_[+2]_110 chr2R:13628483-13628603 3.2e-05 28_[+2]_84 chr3R:28042984-28043104 3.2e-05 103_[+2]_9 chr3R:9492253-9492373 3.2e-05 109_[+2]_3 chrX:19452587-19452707 3.2e-05 7_[+2]_105 chr3L:6778938-6779058 3.2e-05 69_[+2]_43 chr3R:19749708-19749828 3.2e-05 79_[+2]_33 chr3L:6044989-6045109 3.2e-05 39_[+2]_73 chr2L:5564271-5564391 3.2e-05 12_[+2]_100 chr3L:9188761-9188881 3.2e-05 111_[+2]_1 chr3L:19229663-19229783 3.2e-05 108_[+2]_4 chr2L:966841-966961 5.7e-05 21_[+2]_91 chrX:15436999-15437119 5.7e-05 39_[+2]_73 chr3L:1146614-1146734 5.7e-05 75_[+2]_37 chr3R:6568983-6569103 5.7e-05 88_[+2]_24 chr3R:16531842-16531962 5.7e-05 34_[+2]_78 chr2L:4018140-4018260 5.7e-05 15_[+2]_97 chr2L:20907306-20907426 5.7e-05 65_[+2]_47 chr2L:7850545-7850665 9.5e-05 77_[+2]_35 chr3R:10440565-10440685 9.5e-05 66_[+2]_46 chr3R:9140284-9140404 9.5e-05 22_[+2]_90 chr3L:9046413-9046533 9.5e-05 21_[+2]_91 chr2R:14682002-14682122 9.5e-05 4_[+2]_108 chr2R:13029431-13029551 9.5e-05 46_[+2]_66 chrX:12074048-12074168 0.00013 60_[+2]_52 chr3L:19214361-19214481 0.00013 80_[+2]_32 chr3R:11551210-11551330 0.00013 108_[+2]_4 chrX:1504341-1504461 0.00019 37_[+2]_75 chr3R:7034567-7034687 0.00019 72_[+2]_40 chr3L:20166624-20166744 0.00019 52_[+2]_60 chr3R:9852123-9852243 0.00019 58_[+2]_54 chr3R:8426783-8426903 0.00019 16_[+2]_96 chrX:14445285-14445405 0.00019 79_[+2]_33 chr3L:3857594-3857714 0.00019 46_[+2]_66 chr2R:10996776-10996896 0.00019 80_[+2]_32 chr3R:26594277-26594397 0.00019 96_[+2]_16 chr3L:19226354-19226474 0.00021 39_[+2]_73 chr2R:21459035-21459155 0.00021 103_[+2]_9 chr2R:18482188-18482308 0.00028 89_[+2]_23 chr2R:11998379-11998499 0.00028 101_[+2]_11 chr3L:10339695-10339815 0.00028 2_[+2]_110 chr3R:9976867-9976987 0.00028 30_[+2]_82 chr2R:8758720-8758840 0.00028 7_[+2]_105 chr3L:3641055-3641175 0.00028 72_[+2]_40 chr2R:7689886-7690006 0.00035 23_[+2]_89 chr2L:10601383-10601503 0.00035 [+2]_112 chr2R:6805549-6805669 0.00035 84_[+2]_28 chr2R:5851557-5851677 0.00035 107_[+2]_5 chr3L:5395440-5395560 0.00035 31_[+2]_81 chr2R:12252416-12252536 0.00035 107_[+2]_5 chr2R:11073006-11073126 0.00035 74_[+2]_38 chr3R:12603940-12604060 0.00035 45_[+2]_67 chrX:18982296-18982416 0.00035 45_[+2]_67 chr3L:11399598-11399718 0.00035 67_[+2]_45 chr3L:15312105-15312225 0.0004 34_[+2]_78 chr2R:18331961-18332081 0.0004 57_[+2]_55 chr3R:16800324-16800444 0.0004 96_[+2]_16 chr2L:19202683-19202803 0.0004 11_[+2]_101 chr2R:24225421-24225541 0.00044 10_[+2]_102 chrX:5206291-5206411 0.00044 17_[+2]_95 chrX:1727996-1728116 0.0005 70_[+2]_42 chr2L:14121733-14121853 0.0005 87_[+2]_25 chr3R:26494057-26494177 0.0006 95_[+2]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTRTGKG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKTRTGKG width=8 seqs=66 chr3R:15451761-15451881 ( 48) TTTGTGTG 1 chr2L:5628739-5628859 ( 49) TGTGTGTG 1 chr2L:20051283-20051403 ( 64) TTTGTGTG 1 chr3L:1170736-1170856 ( 3) TGTGTGTG 1 chr2R:13628483-13628603 ( 29) TGTGTGTG 1 chr3R:28042984-28043104 ( 104) TGTGTGTG 1 chr3R:9492253-9492373 ( 110) TGTGTGTG 1 chrX:19452587-19452707 ( 8) TTTGTGTG 1 chr3L:6778938-6779058 ( 70) TGTGTGTG 1 chr3R:19749708-19749828 ( 80) TGTGTGTG 1 chr3L:6044989-6045109 ( 40) TGTGTGTG 1 chr2L:5564271-5564391 ( 13) TGTGTGTG 1 chr3L:9188761-9188881 ( 112) TGTGTGTG 1 chr3L:19229663-19229783 ( 109) TGTGTGTG 1 chr2L:966841-966961 ( 22) TGTGTGGG 1 chrX:15436999-15437119 ( 40) TGTGTGGG 1 chr3L:1146614-1146734 ( 76) TTTGTGGG 1 chr3R:6568983-6569103 ( 89) TGTGTGGG 1 chr3R:16531842-16531962 ( 35) TTTGTGGG 1 chr2L:4018140-4018260 ( 16) TTTGTGGG 1 chr2L:20907306-20907426 ( 66) TGTGTGGG 1 chr2L:7850545-7850665 ( 78) TTTATGTG 1 chr3R:10440565-10440685 ( 67) TGTATGTG 1 chr3R:9140284-9140404 ( 23) TTTATGTG 1 chr3L:9046413-9046533 ( 22) TTTATGTG 1 chr2R:14682002-14682122 ( 5) TTTATGTG 1 chr2R:13029431-13029551 ( 47) TTTATGTG 1 chrX:12074048-12074168 ( 61) TTTATGGG 1 chr3L:19214361-19214481 ( 81) TTTATGGG 1 chr3R:11551210-11551330 ( 109) TTTATGGG 1 chrX:1504341-1504461 ( 38) TGTGTGCG 1 chr3R:7034567-7034687 ( 73) TGTGTGTC 1 chr3L:20166624-20166744 ( 53) TGTGTGTC 1 chr3R:9852123-9852243 ( 59) TGTGTGCG 1 chr3R:8426783-8426903 ( 17) TTTGTGCG 1 chrX:14445285-14445405 ( 80) TTTGTGTC 1 chr3L:3857594-3857714 ( 47) TTTGTGCG 1 chr2R:10996776-10996896 ( 81) TTTGTGCG 1 chr3R:26594277-26594397 ( 97) TGTGTGTC 1 chr3L:19226354-19226474 ( 40) TTTGTGGC 1 chr2R:21459035-21459155 ( 104) TTTGTGGC 1 chr2R:18482188-18482308 ( 90) TTTATGTC 1 chr2R:11998379-11998499 ( 102) TTTATGCG 1 chr3L:10339695-10339815 ( 3) TGTATGTC 1 chr3R:9976867-9976987 ( 31) TTTATGTC 1 chr2R:8758720-8758840 ( 8) TTTATGCG 1 chr3L:3641055-3641175 ( 73) TTTATGCG 1 chr2R:7689886-7690006 ( 24) TTTATGGC 1 chr2L:10601383-10601503 ( 1) TTTATGGC 1 chr2R:6805549-6805669 ( 85) TTTATGGC 1 chr2R:5851557-5851677 ( 108) TTTATGGC 1 chr3L:5395440-5395560 ( 32) TGTCTGTG 1 chr2R:12252416-12252536 ( 108) TTTCTGTG 1 chr2R:11073006-11073126 ( 75) TTTATGGC 1 chr3R:12603940-12604060 ( 46) TTTATGGC 1 chrX:18982296-18982416 ( 46) TTTCTGTG 1 chr3L:11399598-11399718 ( 68) TTTATGGC 1 chr3L:15312105-15312225 ( 35) TGTCTGGG 1 chr2R:18331961-18332081 ( 58) TGTCTGGG 1 chr3R:16800324-16800444 ( 97) TTTGTGCC 1 chr2L:19202683-19202803 ( 12) TGTCTGGG 1 chr2R:24225421-24225541 ( 11) TTTATGCC 1 chrX:5206291-5206411 ( 18) TGTATGCC 1 chrX:1727996-1728116 ( 71) TGTCTGTC 1 chr2L:14121733-14121853 ( 88) TGTCTGCG 1 chr3R:26494057-26494177 ( 96) TGGGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTRTGKG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.0842 E= 3.5e-004 -1269 -1269 -1269 186 -1269 -1269 102 99 -1269 -1269 -388 184 44 -95 120 -1269 -1269 -1269 -1269 186 -1269 -1269 216 -1269 -1269 -37 64 77 -1269 37 164 -1269 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTRTGKG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 3.5e-004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.454545 0.545455 0.000000 0.000000 0.015152 0.984848 0.363636 0.121212 0.515152 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.181818 0.348485 0.469697 0.000000 0.303030 0.696970 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTRTGKG MEME-2 regular expression -------------------------------------------------------------------------------- T[TG]T[GA]TG[TG][GC] -------------------------------------------------------------------------------- Time 13.65 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCDYCC MEME-3 width = 8 sites = 44 llr = 368 E-value = 5.7e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCDYCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :13:4::: pos.-specific C a97a:6aa probability G ::::31:: matrix T ::::33:: bits 2.2 * * ** 1.9 * * ** 1.7 * * ** 1.5 ** * ** Relative 1.3 ** * ** Entropy 1.1 **** ** (12.1 bits) 0.9 **** ** 0.6 **** *** 0.4 **** *** 0.2 ******** 0.0 -------- Multilevel CCCCACCC consensus A GT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCDYCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:6771936-6772056 24 1.89e-05 TACCAACCTC CCCCGCCC CTGCGCACAA chr3L:6379430-6379550 80 1.89e-05 GGCCCCCGTG CCCCGCCC CGCAGCCATT chrX:542227-542347 99 1.89e-05 tcaggccacg ccccgccc cgcgccaacc chr3R:26675850-26675970 102 1.89e-05 GTTCTTGTTT CCCCGCCC ATCCGAACCC chrX:10184503-10184623 17 2.94e-05 ATCTCCCATT CCCCTCCC TCCCCAACTC chr3L:6539663-6539783 96 2.94e-05 GGGGGGTTTC CCCCTCCC CCGCGACCAT chr3R:13907474-13907594 23 2.94e-05 GACTCCCTGC CCCCTCCC CCAGATCGTA chr2R:6805549-6805669 1 2.94e-05 . CCCCTCCC CGCTCCAACG chrX:10418964-10419084 97 2.94e-05 CTTTTCCTCC CCCCTCCC CTTGAGCAAT chr3L:19231719-19231839 79 2.94e-05 TGACCTCTCA CCCCTCCC CATTCGCTCC chr3R:28042984-28043104 83 4.14e-05 GCCAGGACAA CCCCATCC ATGTGTGCTt chr3R:12879330-12879450 40 4.14e-05 attcaccgtt ccccatcc cccttcccat chr2L:12149782-12149902 36 4.14e-05 TACATACAAC CCCCATCC TAATGGTTGG chr2R:9316367-9316487 25 4.14e-05 ccattccaat ccccatcc cacaCGCATA chr3R:11510694-11510814 28 4.14e-05 GCTGATGGAG CCCCATCC CATAAACCAC chr3L:6348336-6348456 93 4.14e-05 CGCCAGAGAC CCCCATCC AAAGTTGGGC chr3R:5801815-5801935 55 4.14e-05 GATGCTGCCG CCCCATCC GGAGTCGCAG chr3R:16792725-16792845 69 4.14e-05 AAGGACCCGT CCCCATCC GGCTTTTTGG chr3R:24457999-24458119 13 5.31e-05 ACCGTCCTTG CCACACCC CCGCCGCCCA chrX:18982296-18982416 96 5.31e-05 CACCATCCCG CCACACCC Ccaccaacta chr2L:9131105-9131225 1 5.31e-05 . CCACACCC TTTCACACTG chr2R:22532480-22532600 12 5.31e-05 CCTCCTCAAA CCACACCC CTGCCCACTA chr2L:14411236-14411356 85 6.32e-05 CATAAAATGC CCCCGTCC ATTGTGGATT chr3R:9492253-9492373 19 8.53e-05 CCTTATCCCA CCCCTTCC CCATCATCTT chr3R:19727947-19728067 73 8.53e-05 tcgcagccTG CCACGCCC ACCAACAACA chr3R:12827697-12827817 80 8.53e-05 GCCCATTTGA CCACGCCC ACAATGCGTT chr3R:12600865-12600985 19 8.53e-05 CATAATAATG CCACGCCC CACGCCTGCC chr2L:13698210-13698330 78 8.53e-05 TACGCACGGG CCACGCCC ACCAAACGCC chr3L:20176327-20176447 16 9.73e-05 ACGGCCATTC CCACTCCC TTCACGCTTT chr3R:10440565-10440685 30 9.73e-05 GTTGAGTCCA CCACTCCC CTCTTGCCAG chr3R:6767095-6767215 30 1.11e-04 CCAACTGTTT CCACATCC TCAACGACGA chrX:14445285-14445405 30 1.11e-04 agtccaccat ccacatcc tccatTTCCA chr3R:22279470-22279590 6 1.21e-04 CCCGT CCCCAGCC TTTCATTTGA chr2L:19202683-19202803 79 1.21e-04 CCTGCGAAAT CCCCAGCC AGAATCCAGC chrX:14331956-14332076 11 1.44e-04 CCCGTAGCTC CACCACCC TCCCTCATGA chr3L:1146614-1146734 24 1.44e-04 CCACCGAAAC CACCACCC TTGTGCGTCA chr3L:6290765-6290885 60 1.44e-04 GGACCTTTAC CACCACCC ACCAGCCATC chr3R:13149939-13150059 87 1.52e-04 AAATAATGAT CCCCGGCC GGGGTTTTTT chrX:21575937-21576057 81 1.66e-04 CTCCCATCGC CCACTTCC TCGCCACTTT chr3L:17096338-17096458 3 1.86e-04 AC CACCGCCC AACCATCGAA chr3L:21859443-21859563 25 1.86e-04 TCCCACCAAG CCCCTGCC CCCTGCCCAC chr2R:13659609-13659729 32 1.98e-04 GCATCCTCCT CACCTCCC TAAGCGACCA chr2L:14948601-14948721 53 2.07e-04 AGACCGTCCC CCCCCCCC CCTTTTCCGT chr3R:17862402-17862522 16 2.66e-04 TCTACGGCAT CACCGTCC TTTCGGCCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCDYCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:6771936-6772056 1.9e-05 23_[+3]_89 chr3L:6379430-6379550 1.9e-05 79_[+3]_33 chrX:542227-542347 1.9e-05 98_[+3]_14 chr3R:26675850-26675970 1.9e-05 101_[+3]_11 chrX:10184503-10184623 2.9e-05 16_[+3]_96 chr3L:6539663-6539783 2.9e-05 95_[+3]_17 chr3R:13907474-13907594 2.9e-05 22_[+3]_90 chr2R:6805549-6805669 2.9e-05 [+3]_112 chrX:10418964-10419084 2.9e-05 96_[+3]_16 chr3L:19231719-19231839 2.9e-05 78_[+3]_34 chr3R:28042984-28043104 4.1e-05 82_[+3]_30 chr3R:12879330-12879450 4.1e-05 39_[+3]_73 chr2L:12149782-12149902 4.1e-05 35_[+3]_77 chr2R:9316367-9316487 4.1e-05 24_[+3]_88 chr3R:11510694-11510814 4.1e-05 27_[+3]_85 chr3L:6348336-6348456 4.1e-05 92_[+3]_20 chr3R:5801815-5801935 4.1e-05 54_[+3]_58 chr3R:16792725-16792845 4.1e-05 68_[+3]_44 chr3R:24457999-24458119 5.3e-05 12_[+3]_100 chrX:18982296-18982416 5.3e-05 95_[+3]_17 chr2L:9131105-9131225 5.3e-05 [+3]_112 chr2R:22532480-22532600 5.3e-05 11_[+3]_101 chr2L:14411236-14411356 6.3e-05 84_[+3]_28 chr3R:9492253-9492373 8.5e-05 18_[+3]_94 chr3R:19727947-19728067 8.5e-05 72_[+3]_40 chr3R:12827697-12827817 8.5e-05 79_[+3]_33 chr3R:12600865-12600985 8.5e-05 18_[+3]_94 chr2L:13698210-13698330 8.5e-05 77_[+3]_35 chr3L:20176327-20176447 9.7e-05 15_[+3]_97 chr3R:10440565-10440685 9.7e-05 29_[+3]_83 chr3R:6767095-6767215 0.00011 29_[+3]_83 chrX:14445285-14445405 0.00011 29_[+3]_83 chr3R:22279470-22279590 0.00012 5_[+3]_107 chr2L:19202683-19202803 0.00012 78_[+3]_34 chrX:14331956-14332076 0.00014 10_[+3]_102 chr3L:1146614-1146734 0.00014 23_[+3]_89 chr3L:6290765-6290885 0.00014 59_[+3]_53 chr3R:13149939-13150059 0.00015 86_[+3]_26 chrX:21575937-21576057 0.00017 80_[+3]_32 chr3L:17096338-17096458 0.00019 2_[+3]_110 chr3L:21859443-21859563 0.00019 24_[+3]_88 chr2R:13659609-13659729 0.0002 31_[+3]_81 chr2L:14948601-14948721 0.00021 52_[+3]_60 chr3R:17862402-17862522 0.00027 15_[+3]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCDYCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCDYCC width=8 seqs=44 chr3R:6771936-6772056 ( 24) CCCCGCCC 1 chr3L:6379430-6379550 ( 80) CCCCGCCC 1 chrX:542227-542347 ( 99) CCCCGCCC 1 chr3R:26675850-26675970 ( 102) CCCCGCCC 1 chrX:10184503-10184623 ( 17) CCCCTCCC 1 chr3L:6539663-6539783 ( 96) CCCCTCCC 1 chr3R:13907474-13907594 ( 23) CCCCTCCC 1 chr2R:6805549-6805669 ( 1) CCCCTCCC 1 chrX:10418964-10419084 ( 97) CCCCTCCC 1 chr3L:19231719-19231839 ( 79) CCCCTCCC 1 chr3R:28042984-28043104 ( 83) CCCCATCC 1 chr3R:12879330-12879450 ( 40) CCCCATCC 1 chr2L:12149782-12149902 ( 36) CCCCATCC 1 chr2R:9316367-9316487 ( 25) CCCCATCC 1 chr3R:11510694-11510814 ( 28) CCCCATCC 1 chr3L:6348336-6348456 ( 93) CCCCATCC 1 chr3R:5801815-5801935 ( 55) CCCCATCC 1 chr3R:16792725-16792845 ( 69) CCCCATCC 1 chr3R:24457999-24458119 ( 13) CCACACCC 1 chrX:18982296-18982416 ( 96) CCACACCC 1 chr2L:9131105-9131225 ( 1) CCACACCC 1 chr2R:22532480-22532600 ( 12) CCACACCC 1 chr2L:14411236-14411356 ( 85) CCCCGTCC 1 chr3R:9492253-9492373 ( 19) CCCCTTCC 1 chr3R:19727947-19728067 ( 73) CCACGCCC 1 chr3R:12827697-12827817 ( 80) CCACGCCC 1 chr3R:12600865-12600985 ( 19) CCACGCCC 1 chr2L:13698210-13698330 ( 78) CCACGCCC 1 chr3L:20176327-20176447 ( 16) CCACTCCC 1 chr3R:10440565-10440685 ( 30) CCACTCCC 1 chr3R:6767095-6767215 ( 30) CCACATCC 1 chrX:14445285-14445405 ( 30) CCACATCC 1 chr3R:22279470-22279590 ( 6) CCCCAGCC 1 chr2L:19202683-19202803 ( 79) CCCCAGCC 1 chrX:14331956-14332076 ( 11) CACCACCC 1 chr3L:1146614-1146734 ( 24) CACCACCC 1 chr3L:6290765-6290885 ( 60) CACCACCC 1 chr3R:13149939-13150059 ( 87) CCCCGGCC 1 chrX:21575937-21576057 ( 81) CCACTTCC 1 chr3L:17096338-17096458 ( 3) CACCGCCC 1 chr3L:21859443-21859563 ( 25) CCCCTGCC 1 chr2R:13659609-13659729 ( 32) CACCTCCC 1 chr2L:14948601-14948721 ( 53) CCCCCCCC 1 chr3R:17862402-17862522 ( 16) CACCGTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCDYCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8592 E= 5.7e-004 -1210 209 -1210 -1210 -97 188 -1210 -1210 14 159 -1210 -1210 -1210 209 -1210 -1210 69 -336 28 -1 -1210 133 -130 21 -1210 209 -1210 -1210 -1210 209 -1210 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCDYCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 5.7e-004 0.000000 1.000000 0.000000 0.000000 0.136364 0.863636 0.000000 0.000000 0.295455 0.704545 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.431818 0.022727 0.272727 0.272727 0.000000 0.590909 0.090909 0.318182 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCDYCC MEME-3 regular expression -------------------------------------------------------------------------------- CC[CA]C[AGT][CT]CC -------------------------------------------------------------------------------- Time 19.75 secs. ******************************************************************************** ******************************************************************************** MOTIF AATGGCCA MEME-4 width = 8 sites = 22 llr = 208 E-value = 1.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATGGCCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 8a:::1:a pos.-specific C :::::99: probability G :::9a:1: matrix T 2:a1:::: bits 2.2 * 1.9 ** * * 1.7 **** * 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******** (13.7 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AATGGCCA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGGCCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:13066022-13066142 9 1.43e-05 ACTGAATG AATGGCCA ACACGTTGCC chrX:14331956-14332076 53 1.43e-05 GCAGCACTTT AATGGCCA TTGTTATGCC chr2L:3933813-3933933 29 1.43e-05 TATTTATGCA AATGGCCA TAACAAATGA chr2L:2015667-2015787 80 1.43e-05 TGGCGCCATC AATGGCCA CCTTGCCCCa chr3R:16746147-16746267 52 1.43e-05 AAACGAACGA AATGGCCA TAAACTTAAG chr3R:15471061-15471181 74 1.43e-05 CCAACTCCAA AATGGCCA CAAACGCGAT chr3L:3641055-3641175 112 1.43e-05 TCGAACGCAA AATGGCCA A chr2L:9131105-9131225 106 1.43e-05 TATACAAATA AATGGCCA AGCTTAA chrX:15199984-15200104 61 1.43e-05 GTGCCCATTT AATGGCCA ACCTCCTCTC chr2R:7689886-7690006 105 2.90e-05 AATTGCGCGT TATGGCCA AAATAGAT chr2L:135508-135628 16 2.90e-05 ACTAGCCTGT TATGGCCA CAGAACTCAA chr2R:12252416-12252536 19 2.90e-05 GCGCGACGAC TATGGCCA AAAGTAATCT chr3R:16531842-16531962 84 2.90e-05 GGCCACTGCT TATGGCCA AGGGGTCCGG chr3R:16791758-16791878 92 2.90e-05 CGAGAATTGT TATGGCCA CCGAAATGGC chr2L:1691160-1691280 17 4.27e-05 TGGCTTATTA AATGGCGA ATAAATGCGG chr3R:9852123-9852243 92 4.27e-05 GGGCTAAAGC AATGGCGA CAATTTGTTA chr3R:20462817-20462937 99 4.27e-05 TGACTGCCAA AATGGCGA CGCTAGCTGG chr3R:15451761-15451881 31 5.91e-05 GGGAATATGG AATGGACA AACAAGCGAT chr3R:16842676-16842796 73 5.91e-05 AAAATCTGAA AATGGACA ACAACAAAAA chr3L:10832773-10832893 30 5.91e-05 TCAGCCATTA AATGGACA AATGAGGGAT chr2R:14131483-14131603 44 7.66e-05 CGTTCGTTCA AATTGCCA AGGCTATGAG chr3L:5484192-5484312 37 7.66e-05 ATAAAAACAC AATTGCCA AGGAATTATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGGCCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:13066022-13066142 1.4e-05 8_[+4]_104 chrX:14331956-14332076 1.4e-05 52_[+4]_60 chr2L:3933813-3933933 1.4e-05 28_[+4]_84 chr2L:2015667-2015787 1.4e-05 79_[+4]_33 chr3R:16746147-16746267 1.4e-05 51_[+4]_61 chr3R:15471061-15471181 1.4e-05 73_[+4]_39 chr3L:3641055-3641175 1.4e-05 111_[+4]_1 chr2L:9131105-9131225 1.4e-05 105_[+4]_7 chrX:15199984-15200104 1.4e-05 60_[+4]_52 chr2R:7689886-7690006 2.9e-05 104_[+4]_8 chr2L:135508-135628 2.9e-05 15_[+4]_97 chr2R:12252416-12252536 2.9e-05 18_[+4]_94 chr3R:16531842-16531962 2.9e-05 83_[+4]_29 chr3R:16791758-16791878 2.9e-05 91_[+4]_21 chr2L:1691160-1691280 4.3e-05 16_[+4]_96 chr3R:9852123-9852243 4.3e-05 91_[+4]_21 chr3R:20462817-20462937 4.3e-05 98_[+4]_14 chr3R:15451761-15451881 5.9e-05 30_[+4]_82 chr3R:16842676-16842796 5.9e-05 72_[+4]_40 chr3L:10832773-10832893 5.9e-05 29_[+4]_83 chr2R:14131483-14131603 7.7e-05 43_[+4]_69 chr3L:5484192-5484312 7.7e-05 36_[+4]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGGCCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATGGCCA width=8 seqs=22 chr2L:13066022-13066142 ( 9) AATGGCCA 1 chrX:14331956-14332076 ( 53) AATGGCCA 1 chr2L:3933813-3933933 ( 29) AATGGCCA 1 chr2L:2015667-2015787 ( 80) AATGGCCA 1 chr3R:16746147-16746267 ( 52) AATGGCCA 1 chr3R:15471061-15471181 ( 74) AATGGCCA 1 chr3L:3641055-3641175 ( 112) AATGGCCA 1 chr2L:9131105-9131225 ( 106) AATGGCCA 1 chrX:15199984-15200104 ( 61) AATGGCCA 1 chr2R:7689886-7690006 ( 105) TATGGCCA 1 chr2L:135508-135628 ( 16) TATGGCCA 1 chr2R:12252416-12252536 ( 19) TATGGCCA 1 chr3R:16531842-16531962 ( 84) TATGGCCA 1 chr3R:16791758-16791878 ( 92) TATGGCCA 1 chr2L:1691160-1691280 ( 17) AATGGCGA 1 chr3R:9852123-9852243 ( 92) AATGGCGA 1 chr3R:20462817-20462937 ( 99) AATGGCGA 1 chr3R:15451761-15451881 ( 31) AATGGACA 1 chr3R:16842676-16842796 ( 73) AATGGACA 1 chr3L:10832773-10832893 ( 30) AATGGACA 1 chr2R:14131483-14131603 ( 44) AATTGCCA 1 chr3L:5484192-5484312 ( 37) AATTGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGGCCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3525 E= 1.1e+000 153 -1110 -1110 -27 190 -1110 -1110 -1110 -1110 -1110 -1110 186 -1110 -1110 202 -159 -1110 -1110 216 -1110 -97 188 -1110 -1110 -1110 188 -71 -1110 190 -1110 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGGCCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.1e+000 0.772727 0.000000 0.000000 0.227273 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 1.000000 0.000000 0.136364 0.863636 0.000000 0.000000 0.000000 0.863636 0.136364 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGGCCA MEME-4 regular expression -------------------------------------------------------------------------------- [AT]ATGGCCA -------------------------------------------------------------------------------- Time 25.75 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTATTKY MEME-5 width = 8 sites = 57 llr = 446 E-value = 9.1e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTATTKY MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a:::1 pos.-specific C ::2::::4 probability G :::::241 matrix T aa8:a864 bits 2.2 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 ****** Entropy 1.1 ******* (11.3 bits) 0.9 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTATTTT consensus GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTKY MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:24457999-24458119 95 2.64e-05 CATTTGTTTG TTTATTTC GAAACATTGT chr2L:16919157-16919277 21 2.64e-05 TACATTTTAT TTTATTTC CCGTCCTACT chrX:542227-542347 55 2.64e-05 TTATTTTGAA TTTATTTC GGTTTACCTG chr2L:10601383-10601503 15 2.64e-05 TGGCTTGAAT TTTATTTC ATTTCATTTC chr3L:17106631-17106751 16 2.64e-05 tttcctcttT TTTATTTC GGGCCCAGCC chr2L:8840839-8840959 93 2.64e-05 AACGCGCTTA TTTATTTC ACTGTGTCGT chr2L:22075453-22075573 28 2.64e-05 TTTCATGACA TTTATTTC GCTTGTTCCA chrX:2361397-2361517 86 5.74e-05 GTTTTTATAT TTTATTTT CGTCAGCAGC chr3R:13253779-13253899 55 5.74e-05 GGCACTTGCT TTTATTTT ACCCTGGTTT chrX:6376114-6376234 102 5.74e-05 CTTTGTTTTA TTTATTTT AACTTTTGTG chr3L:2422932-2423052 1 5.74e-05 . tttatttt gttttACCAT chrX:1264766-1264886 51 5.74e-05 GATATTTTAA TTTATTTT GAATAACAAA chr2L:20907306-20907426 49 5.74e-05 GTGTTGGTGT TTTATTTT ATTTGTTCTT chr3L:9188761-9188881 61 5.74e-05 ggttgccatt tttatttt tactgttatt chr3L:6508222-6508342 1 5.74e-05 . TTTATTTT ATTACATTTT chr2R:18373073-18373193 31 7.90e-05 TATTTTTCAT TTTATTGC TGACACACAA chr3L:6379430-6379550 5 7.90e-05 AAAC TTTATTGC CTCACGCTTT chr3L:19226354-19226474 27 7.90e-05 cttattaatt tttattgc cattatttgt chr3L:11015344-11015464 30 7.90e-05 ATTAACTGGT TTTATTGC CCGATTGGCT chr3R:16806280-16806400 32 7.90e-05 GAAAGTTTCT TTTATTGC ATACATGAGC chr3L:3102773-3102893 33 7.90e-05 GACGGATGAA TTTATTGC CAAATGGCAC chr3R:12603940-12604060 107 7.90e-05 GAACATTACT TTTATTGC CCCCAA chr3R:12052502-12052622 35 7.90e-05 TGTTCTAGTT TTTATTGC CAACGTTCGC chr2L:12567927-12568047 49 7.90e-05 TTGAATCAGC TTTATTGC TGGCATCATT chr3L:4602270-4602390 29 7.90e-05 CCCACATTTT TTTATTGC GCTCCATTAT chr3R:16792725-16792845 22 1.04e-04 TGCCTCGTTG TTTATTGT AATGGGCGTT chr2R:24225421-24225541 80 1.56e-04 AAATTCCAAT TTTATTTA GTCAGTGAGG chr3L:9856958-9857078 103 1.56e-04 ATTTACAACA TTTATTTA GTATTAACTC chrX:15436999-15437119 58 2.04e-04 GGAGAAGCAC TTCATTTC TTGGCATTTC chr3L:17279049-17279169 88 2.04e-04 GCTGAGCCAT TTTATGTT TGCCCTTGTA chr3R:6568983-6569103 48 2.04e-04 GCAGCAAATT TTTATGTT ATTGCGTAGC chr3R:16800324-16800444 68 2.04e-04 ATAAAATAAA TTTATGTT ACAATTAATG chr2L:5564271-5564391 69 2.04e-04 GTATGTCATG TTTATGTT GGCAAGTTGT chr3R:10440565-10440685 91 2.04e-04 CAATTTCCCT Tttatgtt attttaattt chr2L:19843124-19843244 59 2.30e-04 GTGGCAATTA TTCATTTT ATGAGCCCAC chr2R:9905289-9905409 42 2.30e-04 CTAATTCGTT TTCATTTT CGATTTTCGC chr2L:6885306-6885426 110 2.30e-04 GATTTCCTCC TTCATTTT TTT chr3R:7034567-7034687 81 2.30e-04 AATGTGTGTC TTCATTTT GTGGAGTTTT chr3R:9492253-9492373 75 2.30e-04 TTTTCCTCAT TTCATTTT TATCCtgtgc chrX:12074048-12074168 82 2.30e-04 TTGCAACAGT TTCATTTT CATTTTGCGC chr2R:17511226-17511346 94 2.30e-04 CTATTTAGAT TTCATTTT AACGTAGCTA chr3R:17918316-17918436 2 2.30e-04 T TTCATTTT AACCaaaaaa chr3R:16840901-16841021 75 2.30e-04 TCATTCATAA TTCATTTT GTACGCCGCA chr2L:5628739-5628859 66 2.73e-04 gtgGCTGATT TTTATTGA CGTTTGAGCA chrX:19452587-19452707 38 2.73e-04 GACAATAATT TTTATGGC ATAAAATTTT chr3L:6778938-6779058 8 2.73e-04 GCCGTTT TTTATGGC GTTTCTTCTA chr3L:10372869-10372989 55 2.73e-04 TTAATTTGAT TTTATTGA ATTTGTTATC chr2L:19202683-19202803 62 2.73e-04 CAATTTCGGA TTTATGGC CTGCGAAATC chrX:14445285-14445405 90 2.73e-04 TTTGTGTCGT TTTATGGC AGCTTTTTGC chr3L:6032616-6032736 64 2.73e-04 CTAATCTAAT TTTATTGA TATTGACACA chr3R:26594277-26594397 23 2.73e-04 TAATTTATAT TTTATGGC GTTGGCGCTT chr3L:9046413-9046533 112 2.73e-04 ATAACGATGC TTTATTGA G chr3R:16765241-16765361 72 2.73e-04 CCAATAAATG TTTATTGA ACGTCGGACA chr3R:16777445-16777565 104 3.12e-04 TCTAATGCGA TTTATGGT CGAACGGAT chr2L:1691160-1691280 106 3.59e-04 TTCGTATATA TTTATTTG GGCTTTT chr3R:22279470-22279590 50 3.59e-04 ATTCTTTCAA TTTATTTG CTCGCATTTC chr2L:6202989-6203109 8 3.59e-04 GTGAGCA TTTATTTG TTTTGGGCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTKY MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:24457999-24458119 2.6e-05 94_[+5]_18 chr2L:16919157-16919277 2.6e-05 20_[+5]_92 chrX:542227-542347 2.6e-05 54_[+5]_58 chr2L:10601383-10601503 2.6e-05 14_[+5]_98 chr3L:17106631-17106751 2.6e-05 15_[+5]_97 chr2L:8840839-8840959 2.6e-05 92_[+5]_20 chr2L:22075453-22075573 2.6e-05 27_[+5]_85 chrX:2361397-2361517 5.7e-05 85_[+5]_27 chr3R:13253779-13253899 5.7e-05 54_[+5]_58 chrX:6376114-6376234 5.7e-05 101_[+5]_11 chr3L:2422932-2423052 5.7e-05 [+5]_112 chrX:1264766-1264886 5.7e-05 50_[+5]_62 chr2L:20907306-20907426 5.7e-05 48_[+5]_64 chr3L:9188761-9188881 5.7e-05 60_[+5]_52 chr3L:6508222-6508342 5.7e-05 [+5]_112 chr2R:18373073-18373193 7.9e-05 30_[+5]_82 chr3L:6379430-6379550 7.9e-05 4_[+5]_108 chr3L:19226354-19226474 7.9e-05 26_[+5]_86 chr3L:11015344-11015464 7.9e-05 29_[+5]_83 chr3R:16806280-16806400 7.9e-05 31_[+5]_81 chr3L:3102773-3102893 7.9e-05 32_[+5]_80 chr3R:12603940-12604060 7.9e-05 106_[+5]_6 chr3R:12052502-12052622 7.9e-05 34_[+5]_78 chr2L:12567927-12568047 7.9e-05 48_[+5]_64 chr3L:4602270-4602390 7.9e-05 28_[+5]_84 chr3R:16792725-16792845 0.0001 21_[+5]_91 chr2R:24225421-24225541 0.00016 79_[+5]_33 chr3L:9856958-9857078 0.00016 102_[+5]_10 chrX:15436999-15437119 0.0002 57_[+5]_55 chr3L:17279049-17279169 0.0002 87_[+5]_25 chr3R:6568983-6569103 0.0002 47_[+5]_65 chr3R:16800324-16800444 0.0002 67_[+5]_45 chr2L:5564271-5564391 0.0002 68_[+5]_44 chr3R:10440565-10440685 0.0002 90_[+5]_22 chr2L:19843124-19843244 0.00023 58_[+5]_54 chr2R:9905289-9905409 0.00023 41_[+5]_71 chr2L:6885306-6885426 0.00023 109_[+5]_3 chr3R:7034567-7034687 0.00023 80_[+5]_32 chr3R:9492253-9492373 0.00023 74_[+5]_38 chrX:12074048-12074168 0.00023 81_[+5]_31 chr2R:17511226-17511346 0.00023 93_[+5]_19 chr3R:17918316-17918436 0.00023 1_[+5]_111 chr3R:16840901-16841021 0.00023 74_[+5]_38 chr2L:5628739-5628859 0.00027 65_[+5]_47 chrX:19452587-19452707 0.00027 37_[+5]_75 chr3L:6778938-6779058 0.00027 7_[+5]_105 chr3L:10372869-10372989 0.00027 54_[+5]_58 chr2L:19202683-19202803 0.00027 61_[+5]_51 chrX:14445285-14445405 0.00027 89_[+5]_23 chr3L:6032616-6032736 0.00027 63_[+5]_49 chr3R:26594277-26594397 0.00027 22_[+5]_90 chr3L:9046413-9046533 0.00027 111_[+5]_1 chr3R:16765241-16765361 0.00027 71_[+5]_41 chr3R:16777445-16777565 0.00031 103_[+5]_9 chr2L:1691160-1691280 0.00036 105_[+5]_7 chr3R:22279470-22279590 0.00036 49_[+5]_63 chr2L:6202989-6203109 0.00036 7_[+5]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTKY MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTATTKY width=8 seqs=57 chr3R:24457999-24458119 ( 95) TTTATTTC 1 chr2L:16919157-16919277 ( 21) TTTATTTC 1 chrX:542227-542347 ( 55) TTTATTTC 1 chr2L:10601383-10601503 ( 15) TTTATTTC 1 chr3L:17106631-17106751 ( 16) TTTATTTC 1 chr2L:8840839-8840959 ( 93) TTTATTTC 1 chr2L:22075453-22075573 ( 28) TTTATTTC 1 chrX:2361397-2361517 ( 86) TTTATTTT 1 chr3R:13253779-13253899 ( 55) TTTATTTT 1 chrX:6376114-6376234 ( 102) TTTATTTT 1 chr3L:2422932-2423052 ( 1) TTTATTTT 1 chrX:1264766-1264886 ( 51) TTTATTTT 1 chr2L:20907306-20907426 ( 49) TTTATTTT 1 chr3L:9188761-9188881 ( 61) TTTATTTT 1 chr3L:6508222-6508342 ( 1) TTTATTTT 1 chr2R:18373073-18373193 ( 31) TTTATTGC 1 chr3L:6379430-6379550 ( 5) TTTATTGC 1 chr3L:19226354-19226474 ( 27) TTTATTGC 1 chr3L:11015344-11015464 ( 30) TTTATTGC 1 chr3R:16806280-16806400 ( 32) TTTATTGC 1 chr3L:3102773-3102893 ( 33) TTTATTGC 1 chr3R:12603940-12604060 ( 107) TTTATTGC 1 chr3R:12052502-12052622 ( 35) TTTATTGC 1 chr2L:12567927-12568047 ( 49) TTTATTGC 1 chr3L:4602270-4602390 ( 29) TTTATTGC 1 chr3R:16792725-16792845 ( 22) TTTATTGT 1 chr2R:24225421-24225541 ( 80) TTTATTTA 1 chr3L:9856958-9857078 ( 103) TTTATTTA 1 chrX:15436999-15437119 ( 58) TTCATTTC 1 chr3L:17279049-17279169 ( 88) TTTATGTT 1 chr3R:6568983-6569103 ( 48) TTTATGTT 1 chr3R:16800324-16800444 ( 68) TTTATGTT 1 chr2L:5564271-5564391 ( 69) TTTATGTT 1 chr3R:10440565-10440685 ( 91) TTTATGTT 1 chr2L:19843124-19843244 ( 59) TTCATTTT 1 chr2R:9905289-9905409 ( 42) TTCATTTT 1 chr2L:6885306-6885426 ( 110) TTCATTTT 1 chr3R:7034567-7034687 ( 81) TTCATTTT 1 chr3R:9492253-9492373 ( 75) TTCATTTT 1 chrX:12074048-12074168 ( 82) TTCATTTT 1 chr2R:17511226-17511346 ( 94) TTCATTTT 1 chr3R:17918316-17918436 ( 2) TTCATTTT 1 chr3R:16840901-16841021 ( 75) TTCATTTT 1 chr2L:5628739-5628859 ( 66) TTTATTGA 1 chrX:19452587-19452707 ( 38) TTTATGGC 1 chr3L:6778938-6779058 ( 8) TTTATGGC 1 chr3L:10372869-10372989 ( 55) TTTATTGA 1 chr2L:19202683-19202803 ( 62) TTTATGGC 1 chrX:14445285-14445405 ( 90) TTTATGGC 1 chr3L:6032616-6032736 ( 64) TTTATTGA 1 chr3R:26594277-26594397 ( 23) TTTATGGC 1 chr3L:9046413-9046533 ( 112) TTTATTGA 1 chr3R:16765241-16765361 ( 72) TTTATTGA 1 chr3R:16777445-16777565 ( 104) TTTATGGT 1 chr2L:1691160-1691280 ( 106) TTTATTTG 1 chr3R:22279470-22279590 ( 50) TTTATTTG 1 chr2L:6202989-6203109 ( 8) TTTATTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTKY MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1878 E= 9.1e-002 -1248 -1248 -1248 186 -1248 -1248 -1248 186 -1248 -42 -1248 159 190 -1248 -1248 -1248 -1248 -1248 -1248 186 -1248 -1248 -21 156 -1248 -1248 79 116 -112 78 -209 62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTKY MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 9.1e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.175439 0.000000 0.824561 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.192982 0.807018 0.000000 0.000000 0.385965 0.614035 0.122807 0.403509 0.052632 0.421053 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTKY MEME-5 regular expression -------------------------------------------------------------------------------- TTTATT[TG][TC] -------------------------------------------------------------------------------- Time 31.71 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16791758-16791878 3.92e-02 91_[+4(2.90e-05)]_21 chr3R:16755013-16755133 4.28e-01 120 chr2L:14411236-14411356 8.55e-03 84_[+3(6.32e-05)]_28 chr2R:21459035-21459155 3.20e-02 120 chr2R:6983600-6983720 7.67e-01 120 chr3L:19229663-19229783 1.13e-01 108_[+2(3.15e-05)]_4 chr2R:13029431-13029551 1.29e-03 46_[+2(9.49e-05)]_54_[+1(1.52e-05)]_\ 4 chr3R:16804225-16804345 6.78e-01 120 chr3R:10493660-10493780 3.43e-01 120 chr2L:10682327-10682447 7.36e-01 120 chr3L:3706944-3707064 1.30e-01 120 chrX:5206291-5206411 1.28e-01 120 chr3L:6508222-6508342 2.22e-02 [+5(5.74e-05)]_42_[+1(7.38e-05)]_62 chr2R:22532480-22532600 1.94e-02 11_[+3(5.31e-05)]_101 chr2R:14682002-14682122 2.77e-03 4_[+2(9.49e-05)]_108 chr3R:29005364-29005484 1.59e-01 120 chr3R:11551210-11551330 7.42e-03 120 chrX:15199984-15200104 6.88e-04 60_[+4(1.43e-05)]_52 chr3R:16840901-16841021 2.38e-01 120 chr3R:31826538-31826658 4.56e-03 [+1(1.52e-05)]_74_[+1(7.38e-05)]_30 chr2L:13457166-13457286 5.71e-01 120 chr2L:9131105-9131225 2.52e-03 [+3(5.31e-05)]_97_[+4(1.43e-05)]_7 chr3R:16765241-16765361 2.32e-01 120 chr3L:9046413-9046533 1.84e-02 21_[+2(9.49e-05)]_91 chr3R:26594277-26594397 1.49e-02 120 chr3R:16817604-16817724 2.05e-01 120 chr3L:3641055-3641175 5.79e-04 111_[+4(1.43e-05)]_1 chr3R:16792725-16792845 4.88e-03 68_[+3(4.14e-05)]_44 chr3L:9188761-9188881 1.18e-02 60_[+5(5.74e-05)]_39_[+2(3.15e-05)]_\ 5 chr3R:23649970-23650090 4.25e-01 120 chr3L:9856958-9857078 3.11e-01 120 chr3R:20678564-20678684 3.82e-01 120 chr3L:18640319-18640439 9.12e-01 120 chr3L:7217979-7218099 6.65e-02 16_[+1(7.38e-05)]_17_[+1(1.52e-05)]_\ 2_[+1(7.38e-05)]_61 chr2R:10996776-10996896 4.22e-04 3_[+1(4.83e-05)]_109 chr3R:5801815-5801935 1.48e-01 54_[+3(4.14e-05)]_58 chr2L:17770194-17770314 4.11e-01 120 chr2R:24274192-24274312 3.72e-01 120 chr3R:9140284-9140404 1.47e-02 22_[+2(9.49e-05)]_90 chr3L:7070958-7071078 4.39e-01 120 chr3R:10440565-10440685 1.36e-03 29_[+3(9.73e-05)]_29_[+2(9.49e-05)]_\ 46 chr3R:18955778-18955898 1.95e-01 120 chr3R:27134118-27134238 4.00e-01 120 chr3R:12146162-12146282 7.97e-01 120 chr2L:14121733-14121853 1.70e-01 120 chr3R:29613464-29613584 6.44e-01 120 chr2R:21806037-21806157 4.98e-01 120 chr3L:3857594-3857714 4.44e-02 120 chr3R:25755957-25756077 7.92e-04 47_[+1(1.52e-05)]_65 chr3R:15471061-15471181 7.13e-02 73_[+4(1.43e-05)]_39 chr3L:19214361-19214481 1.54e-02 120 chr3R:25710784-25710904 1.06e-01 53_[+1(1.52e-05)]_59 chr3R:20052365-20052485 7.96e-01 120 chrX:1550765-1550885 4.40e-01 120 chr2L:11357058-11357178 1.90e-01 120 chr3L:11399598-11399718 4.65e-02 120 chr3L:6348336-6348456 2.04e-01 92_[+3(4.14e-05)]_20 chrX:5095351-5095471 8.02e-01 120 chr3R:17918316-17918436 3.90e-01 120 chr3L:17941155-17941275 4.70e-01 120 chr3L:19231719-19231839 2.52e-02 78_[+3(2.94e-05)]_34 chr3L:4602270-4602390 2.62e-02 28_[+5(7.90e-05)]_84 chr3L:7217000-7217120 8.97e-01 120 chr2L:12567927-12568047 5.04e-05 48_[+5(7.90e-05)]_51_[+1(1.52e-05)]_\ 5 chr3R:17849625-17849745 4.57e-01 120 chr2R:8383087-8383207 1.69e-01 90_[+1(3.26e-05)]_22 chr3L:10832773-10832893 2.91e-02 29_[+4(5.91e-05)]_83 chr3L:10727244-10727364 9.00e-01 120 chr3L:1423728-1423848 2.77e-02 46_[+1(9.17e-05)]_66 chr3R:26675850-26675970 4.71e-03 12_[+3(9.73e-05)]_81_[+3(1.89e-05)]_\ 11 chr3R:16746147-16746267 5.95e-02 51_[+4(1.43e-05)]_61 chr3L:17438650-17438770 9.90e-01 120 chr2R:21880060-21880180 7.25e-01 120 chrX:18982296-18982416 3.30e-02 95_[+3(5.31e-05)]_17 chr2L:13698210-13698330 2.21e-02 77_[+3(8.53e-05)]_35 chr3R:16796852-16796972 6.73e-01 120 chr3R:15560305-15560425 9.33e-01 120 chr2R:17511226-17511346 3.28e-01 120 chr2L:20907306-20907426 2.27e-02 17_[+2(5.73e-05)]_23_[+5(5.74e-05)]_\ 9_[+2(5.73e-05)]_47 chr3R:26494057-26494177 1.94e-01 120 chr2R:15920648-15920768 7.38e-03 19_[+1(7.38e-05)]_93 chr3L:6290765-6290885 3.41e-01 120 chr3L:6032616-6032736 1.59e-02 120 chr2L:5564271-5564391 3.81e-02 4_[+2(3.15e-05)]_[+2(3.15e-05)]_100 chr3L:6044989-6045109 4.00e-02 33_[+2(3.15e-05)]_[+2(3.15e-05)]_71 chr3R:12052502-12052622 6.39e-03 34_[+5(7.90e-05)]_78 chrX:12074048-12074168 8.84e-04 105_[+1(1.52e-05)]_7 chrX:14445285-14445405 3.85e-03 120 chr3R:21697298-21697418 8.58e-01 120 chr3L:17312994-17313114 7.15e-02 120 chr2L:3536628-3536748 4.71e-01 120 chr3L:4442293-4442413 2.29e-01 120 chr3L:17163212-17163332 6.17e-01 120 chr3R:12603940-12604060 2.37e-02 106_[+5(7.90e-05)]_6 chr2L:4018140-4018260 4.50e-04 15_[+2(5.73e-05)]_27_[+3(8.53e-05)]_\ 62 chr3R:20462817-20462937 3.80e-02 98_[+4(4.27e-05)]_14 chr3R:19749708-19749828 8.10e-02 77_[+2(3.15e-05)]_35 chr2L:1279901-1280021 2.09e-01 120 chr2L:2015667-2015787 1.61e-03 5_[+1(1.52e-05)]_6_[+1(1.52e-05)]_2_\ [+1(3.26e-05)]_42_[+4(1.43e-05)]_33 chr3L:10718373-10718493 5.88e-02 37_[+1(1.52e-05)]_75 chr2R:8758720-8758840 2.38e-01 120 chr3R:11510694-11510814 1.03e-01 27_[+3(4.14e-05)]_85 chr2L:3593471-3593591 2.74e-01 120 chr2R:13095649-13095769 2.70e-01 120 chr3L:17399119-17399239 4.84e-01 120 chr2L:3738415-3738535 5.17e-01 120 chr2R:11073006-11073126 4.59e-04 76_[+4(2.90e-05)]_36 chr3R:9976867-9976987 2.93e-02 120 chr2L:19202683-19202803 1.84e-03 120 chr2L:6202989-6203109 2.71e-01 120 chr3R:26531389-26531509 5.16e-01 120 chr2R:9316367-9316487 8.08e-03 24_[+3(4.14e-05)]_[+1(7.38e-05)]_80 chr3R:16531842-16531962 1.94e-03 34_[+2(5.73e-05)]_41_[+4(2.90e-05)]_\ 29 chr3L:10372869-10372989 5.05e-01 120 chr3L:13002568-13002688 8.83e-01 120 chr3R:22279470-22279590 1.81e-02 120 chr3R:12600865-12600985 1.86e-01 18_[+3(8.53e-05)]_94 chrX:1264766-1264886 1.19e-01 50_[+5(5.74e-05)]_62 chr3R:8426783-8426903 1.86e-01 120 chr2L:12149782-12149902 1.64e-02 35_[+3(4.14e-05)]_77 chr3R:30089107-30089227 2.18e-01 120 chr3R:5424100-5424220 1.01e-01 120 chr3L:21859443-21859563 4.32e-01 120 chr3L:21294348-21294468 4.93e-01 120 chr2L:14125766-14125886 8.26e-01 120 chr3R:16800324-16800444 7.53e-02 120 chr3R:6568983-6569103 1.65e-02 88_[+2(5.73e-05)]_24 chr3L:4000359-4000479 8.22e-01 120 chr3R:9852123-9852243 1.55e-02 91_[+4(4.27e-05)]_21 chr3R:12827697-12827817 6.61e-02 79_[+3(8.53e-05)]_33 chr2R:12252416-12252536 5.78e-04 18_[+4(2.90e-05)]_94 chr3L:6778938-6779058 1.40e-02 69_[+2(3.15e-05)]_43 chr3R:20404127-20404247 2.01e-02 25_[+1(1.52e-05)]_87 chr3R:16842676-16842796 2.44e-02 72_[+4(5.91e-05)]_40 chrX:10418964-10419084 8.70e-03 96_[+3(2.94e-05)]_16 chr3L:5395440-5395560 1.38e-01 120 chr3L:17096338-17096458 6.44e-03 120 chr2L:14948601-14948721 1.92e-01 120 chr3L:3849890-3850010 1.02e-01 120 chr3R:16785195-16785315 7.89e-01 120 chr3R:19727947-19728067 3.05e-01 72_[+3(8.53e-05)]_40 chr3L:2422932-2423052 1.33e-01 [+5(5.74e-05)]_112 chr3L:10339695-10339815 1.98e-01 120 chr3R:16801552-16801672 3.75e-01 120 chrX:6376114-6376234 1.04e-01 101_[+5(5.74e-05)]_11 chr2R:15105055-15105175 6.76e-02 37_[+1(9.17e-05)]_75 chr2R:17333758-17333878 4.00e-01 120 chr3L:17279049-17279169 1.69e-01 120 chr3L:5484192-5484312 1.61e-01 36_[+4(7.66e-05)]_76 chr2L:3603694-3603814 4.19e-01 120 chr3L:3102773-3102893 9.91e-03 32_[+5(7.90e-05)]_80 chr3R:16781135-16781255 2.76e-01 120 chr2R:17168262-17168382 7.54e-01 120 chr3L:1146614-1146734 1.50e-02 75_[+2(5.73e-05)]_37 chr3R:9234912-9235032 9.12e-01 120 chr2R:21358418-21358538 6.09e-01 120 chr2L:22075453-22075573 2.36e-02 27_[+5(2.64e-05)]_85 chr3R:16806280-16806400 2.02e-01 31_[+5(7.90e-05)]_81 chrX:19452587-19452707 7.05e-03 7_[+2(3.15e-05)]_105 chr2R:11998379-11998499 5.23e-02 120 chr2R:13659609-13659729 1.36e-01 120 chr3R:13800179-13800299 7.47e-01 120 chr3R:13149939-13150059 3.73e-02 120 chr3R:17862402-17862522 5.11e-02 120 chr2L:7442268-7442388 4.07e-02 120 chrX:1727996-1728116 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chr3R:18964972-18965092 9.57e-01 120 chr2L:15796439-15796559 2.24e-01 120 chr2R:24225421-24225541 1.10e-01 120 chr3R:16832063-16832183 7.53e-01 120 chrX:1504341-1504461 7.95e-02 120 chr3R:16794707-16794827 9.18e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************