******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/YL-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:3902269-3902389 1.0000 120 chr2R:7962494-7962614 1.0000 120 chr2R:24775218-24775338 1.0000 120 chr2L:10977029-10977149 1.0000 120 chr3R:14890497-14890617 1.0000 120 chr3L:6955397-6955517 1.0000 120 chr2R:22799502-22799622 1.0000 120 chr2R:8906820-8906940 1.0000 120 chr2R:16336320-16336440 1.0000 120 chrX:10220161-10220281 1.0000 120 chrX:17657480-17657600 1.0000 120 chr4:866719-866839 1.0000 120 chr2R:12613065-12613185 1.0000 120 chr3R:16647769-16647889 1.0000 120 chr2R:14152620-14152740 1.0000 120 chrX:11128964-11129084 1.0000 120 chr2R:11970704-11970824 1.0000 120 chr2R:12916346-12916466 1.0000 120 chr2L:10976284-10976404 1.0000 120 chr2R:11452424-11452544 1.0000 120 chr2R:14870707-14870827 1.0000 120 chr3L:4627118-4627238 1.0000 120 chr2L:8043485-8043605 1.0000 120 chr3R:29491056-29491176 1.0000 120 chr3L:7339609-7339729 1.0000 120 chr2L:19123618-19123738 1.0000 120 chr2R:23949332-23949452 1.0000 120 chr2R:14164432-14164552 1.0000 120 chr3L:16121926-16122046 1.0000 120 chr3R:28600677-28600797 1.0000 120 chr3R:9630161-9630281 1.0000 120 chr3R:30166341-30166461 1.0000 120 chr2L:19064870-19064990 1.0000 120 chr2L:4227720-4227840 1.0000 120 chr2R:11452626-11452746 1.0000 120 chr3L:4283861-4283981 1.0000 120 chr2R:14504188-14504308 1.0000 120 chr3R:6456406-6456526 1.0000 120 chr3R:12413741-12413861 1.0000 120 chr3L:20241259-20241379 1.0000 120 chr2L:19958948-19959068 1.0000 120 chr2R:9882233-9882353 1.0000 120 chr2R:9400109-9400229 1.0000 120 chr4:205677-205797 1.0000 120 chr2R:18157830-18157950 1.0000 120 chr2L:10968089-10968209 1.0000 120 chr2R:14504393-14504513 1.0000 120 chr2R:21635022-21635142 1.0000 120 chr3L:20771649-20771769 1.0000 120 chrX:3881036-3881156 1.0000 120 chrX:6267939-6268059 1.0000 120 chr2R:5663005-5663125 1.0000 120 chr2R:10049572-10049692 1.0000 120 chr3L:5561510-5561630 1.0000 120 chr2R:14870915-14871035 1.0000 120 chr2L:6476933-6477053 1.0000 120 chr3L:211353-211473 1.0000 120 chrX:6684212-6684332 1.0000 120 chr2R:23544004-23544124 1.0000 120 chr2R:22185968-22186088 1.0000 120 chr3L:7654557-7654677 1.0000 120 chr3R:23126361-23126481 1.0000 120 chrX:6350257-6350377 1.0000 120 chrX:11359370-11359490 1.0000 120 chr3R:31218616-31218736 1.0000 120 chrX:10082325-10082445 1.0000 120 chr2R:20640905-20641025 1.0000 120 chr2R:16868301-16868421 1.0000 120 chrX:9089723-9089843 1.0000 120 chr2L:10263332-10263452 1.0000 120 chr2L:18698680-18698800 1.0000 120 chr2L:6724181-6724301 1.0000 120 chr3R:28606000-28606120 1.0000 120 chr3R:19095197-19095317 1.0000 120 chr2R:15939783-15939903 1.0000 120 chr2R:7806749-7806869 1.0000 120 chr3L:16112171-16112291 1.0000 120 chr3R:29933237-29933357 1.0000 120 chr3L:14006880-14007000 1.0000 120 chr3R:11949732-11949852 1.0000 120 chrX:11148299-11148419 1.0000 120 chr2R:9577703-9577823 1.0000 120 chr3L:3223535-3223655 1.0000 120 chr2R:12175170-12175290 1.0000 120 chr2L:11282038-11282158 1.0000 120 chrX:3880837-3880957 1.0000 120 chr3R:4232185-4232305 1.0000 120 chr4:360139-360259 1.0000 120 chr3L:17849671-17849791 1.0000 120 chr3R:32052666-32052786 1.0000 120 chr2R:8925612-8925732 1.0000 120 chr2L:6945258-6945378 1.0000 120 chr2R:21025074-21025194 1.0000 120 chr2R:13826518-13826638 1.0000 120 chr3L:9624201-9624321 1.0000 120 chr3R:17540574-17540694 1.0000 120 chr2R:13220337-13220457 1.0000 120 chr2R:18446490-18446610 1.0000 120 chr2L:6920965-6921085 1.0000 120 chr2R:17518162-17518282 1.0000 120 chr3R:18166312-18166432 1.0000 120 chr3R:27700283-27700403 1.0000 120 chr3L:18683918-18684038 1.0000 120 chr3L:4405987-4406107 1.0000 120 chr2R:21658010-21658130 1.0000 120 chr3L:21554889-21555009 1.0000 120 chr4:358267-358387 1.0000 120 chrX:15992567-15992687 1.0000 120 chr2L:4968894-4969014 1.0000 120 chrX:18864079-18864199 1.0000 120 chr2R:24664590-24664710 1.0000 120 chr3R:20577012-20577132 1.0000 120 chr3R:17546308-17546428 1.0000 120 chr3R:26966946-26967066 1.0000 120 chrX:10213093-10213213 1.0000 120 chr2L:11120211-11120331 1.0000 120 chr3R:11590074-11590194 1.0000 120 chr2L:21169020-21169140 1.0000 120 chr2R:8614901-8615021 1.0000 120 chr2L:2979231-2979351 1.0000 120 chr3L:5360679-5360799 1.0000 120 chr2R:12179753-12179873 1.0000 120 chr2L:6966484-6966604 1.0000 120 chr3R:15786660-15786780 1.0000 120 chr3R:24230822-24230942 1.0000 120 chrX:9149255-9149375 1.0000 120 chr3R:28811121-28811241 1.0000 120 chr2R:19395340-19395460 1.0000 120 chr3R:27947834-27947954 1.0000 120 chr3R:8805529-8805649 1.0000 120 chr2L:8123800-8123920 1.0000 120 chrX:11616367-11616487 1.0000 120 chrX:14226243-14226363 1.0000 120 chrX:6534179-6534299 1.0000 120 chr2R:18134485-18134605 1.0000 120 chrX:6089935-6090055 1.0000 120 chrX:19731024-19731144 1.0000 120 chrX:22540237-22540357 1.0000 120 chr2R:21097286-21097406 1.0000 120 chr3R:5483744-5483864 1.0000 120 chr2L:3452426-3452546 1.0000 120 chr3L:13046966-13047086 1.0000 120 chr2R:12184239-12184359 1.0000 120 chr2L:3514621-3514741 1.0000 120 chr3R:31617909-31618029 1.0000 120 chr3R:27283713-27283833 1.0000 120 chr2R:24874867-24874987 1.0000 120 chr4:571905-572025 1.0000 120 chr3R:12981108-12981228 1.0000 120 chr3R:13382731-13382851 1.0000 120 chrX:15849122-15849242 1.0000 120 chr3L:17024352-17024472 1.0000 120 chr2R:24098421-24098541 1.0000 120 chrX:10857954-10858074 1.0000 120 chr3R:31736955-31737075 1.0000 120 chr3L:835577-835697 1.0000 120 chr2L:2151852-2151972 1.0000 120 chr2L:4973972-4974092 1.0000 120 chrX:2225264-2225384 1.0000 120 chrX:6698386-6698506 1.0000 120 chr2R:13861893-13862013 1.0000 120 chrX:6276667-6276787 1.0000 120 chr3R:5659419-5659539 1.0000 120 chr3R:9628752-9628872 1.0000 120 chr3R:24186333-24186453 1.0000 120 chr2R:18614944-18615064 1.0000 120 chrX:8905911-8906031 1.0000 120 chr2R:24535378-24535498 1.0000 120 chr2R:7917072-7917192 1.0000 120 chr3L:17425602-17425722 1.0000 120 chr2L:1080990-1081110 1.0000 120 chr2R:8893591-8893711 1.0000 120 chr3L:20436186-20436306 1.0000 120 chrX:19522801-19522921 1.0000 120 chr3R:11237788-11237908 1.0000 120 chr2R:12923784-12923904 1.0000 120 chr3L:5136243-5136363 1.0000 120 chr2R:21009518-21009638 1.0000 120 chr3L:20769528-20769648 1.0000 120 chr2L:13793571-13793691 1.0000 120 chr3R:31060819-31060939 1.0000 120 chr2R:10049778-10049898 1.0000 120 chr2L:4444668-4444788 1.0000 120 chr3L:22878080-22878200 1.0000 120 chrX:18650391-18650511 1.0000 120 chr3L:1502522-1502642 1.0000 120 chr2R:23693949-23694069 1.0000 120 chrX:12903159-12903279 1.0000 120 chr3R:18252718-18252838 1.0000 120 chr2R:22415715-22415835 1.0000 120 chr3R:7080236-7080356 1.0000 120 chr3L:9072548-9072668 1.0000 120 chrX:5873326-5873446 1.0000 120 chr3R:12356137-12356257 1.0000 120 chr2R:23707015-23707135 1.0000 120 chr2R:17001938-17002058 1.0000 120 chr2R:8952423-8952543 1.0000 120 chr3R:30425168-30425288 1.0000 120 chr2L:12096385-12096505 1.0000 120 chr3R:8313196-8313316 1.0000 120 chr2L:16356595-16356715 1.0000 120 chr3L:16348053-16348173 1.0000 120 chrX:16593484-16593604 1.0000 120 chr3L:9487685-9487805 1.0000 120 chrX:9159840-9159960 1.0000 120 chr2L:16743400-16743520 1.0000 120 chrX:1868772-1868892 1.0000 120 chr2L:22247581-22247701 1.0000 120 chr2R:18442778-18442898 1.0000 120 chr3L:1496579-1496699 1.0000 120 chr3R:25033347-25033467 1.0000 120 chr3L:21529240-21529360 1.0000 120 chr3R:5592281-5592401 1.0000 120 chr3R:22365898-22366018 1.0000 120 chr2R:21292144-21292264 1.0000 120 chr2R:13990376-13990496 1.0000 120 chr3L:21335202-21335322 1.0000 120 chr2R:14860737-14860857 1.0000 120 chr2R:12162859-12162979 1.0000 120 chr3R:22491215-22491335 1.0000 120 chr2L:13813792-13813912 1.0000 120 chr2L:9963714-9963834 1.0000 120 chr2L:19041821-19041941 1.0000 120 chr2L:19123822-19123942 1.0000 120 chr3R:25983377-25983497 1.0000 120 chr2R:14601154-14601274 1.0000 120 chr2R:17535549-17535669 1.0000 120 chr2R:21616819-21616939 1.0000 120 chr3R:29592005-29592125 1.0000 120 chr2L:4967634-4967754 1.0000 120 chr2R:17737200-17737320 1.0000 120 chr2L:12038348-12038468 1.0000 120 chr3L:12146583-12146703 1.0000 120 chrX:6694514-6694634 1.0000 120 chr2L:19958735-19958855 1.0000 120 chr2R:24515102-24515222 1.0000 120 chr2L:9790535-9790655 1.0000 120 chr3R:14575579-14575699 1.0000 120 chr3R:4906578-4906698 1.0000 120 chr2L:542466-542586 1.0000 120 chr2R:10875731-10875851 1.0000 120 chr3R:22462311-22462431 1.0000 120 chr2L:72043-72163 1.0000 120 chr3L:19924955-19925075 1.0000 120 chr3R:5374962-5375082 1.0000 120 chr3L:22871129-22871249 1.0000 120 chrX:18137104-18137224 1.0000 120 chr2R:16347413-16347533 1.0000 120 chr2R:22608222-22608342 1.0000 120 chrX:13830083-13830203 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_YL-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/YL-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.289 C 0.218 G 0.214 T 0.279 Background letter frequencies (from file dataset with add-one prior applied): A 0.289 C 0.218 G 0.214 T 0.279 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTGTGACC MEME-1 width = 8 sites = 27 llr = 249 E-value = 1.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::6:: pos.-specific C :::::189 probability G 9:a:a12: matrix T :a:a:2:1 bits 2.2 * * 2.0 * * 1.8 ***** * 1.6 ***** * Relative 1.3 ***** ** Entropy 1.1 ***** ** (13.3 bits) 0.9 ***** ** 0.7 ***** ** 0.4 ***** ** 0.2 ******** 0.0 -------- Multilevel GTGTGACC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21616819-21616939 46 1.05e-05 ATTTAGTGTG GTGTGACC GCCGCTGGTC chr2L:9963714-9963834 39 1.05e-05 CGTCTAATTG GTGTGACC AGCCAATGCG chr3R:25033347-25033467 105 1.05e-05 TAGATCAGCA GTGTGACC GGTGGCCA chr3L:1496579-1496699 39 1.05e-05 CTTCTCGCCA GTGTGACC AGATGCCGAA chr2R:21009518-21009638 35 1.05e-05 GCAGCTGGCA GTGTGACC AGTCTACTGT chr2R:12184239-12184359 39 1.05e-05 TTTTTGTGTA GTGTGACC ACAGCTGCGC chr2R:9882233-9882353 113 1.05e-05 CACGTCAATA GTGTGACC chr3L:16121926-16122046 49 1.05e-05 CAACAAAATA GTGTGACC GGACTTATGT chr3R:29491056-29491176 61 1.05e-05 CAGCCGAATG GTGTGACC GTGCCGAGCG chr2R:24775218-24775338 25 1.05e-05 TCGGTGGATA GTGTGACC GTTCGGATAA chr3L:22878080-22878200 110 2.06e-05 TGTCTGCGGT GTGTGTCC GAT chr3R:9630161-9630281 29 2.06e-05 CCTATATAAT GTGTGTCC ACATCAATAC chr3R:25983377-25983497 105 3.09e-05 CGCTCTGTCA GTGTGAGC TCTCAATC chrX:6276667-6276787 52 4.65e-05 GACTATTCCA GTGTGGCC GGCTCCACTT chr3R:26966946-26967066 103 4.65e-05 GCGTTGCCGA GTGTGCCC GTGAATAAAT chrX:6350257-6350377 104 4.65e-05 CACCAAGGCA GTGTGGCC TGACTTGGG chr3L:5561510-5561630 69 4.65e-05 GTGGACTGCA GTGTGGCC GCACTGGTAA chr2R:17535549-17535669 112 7.06e-05 gcgcgcgggt gtgtgtgc g chr3R:5659419-5659539 19 7.06e-05 CGTCTCTGTT GTGTGTGC GTCTGTGTAC chr2R:16868301-16868421 24 7.06e-05 GCATTCGGTG ATGTGACC ACCCCGCAGG chr3R:23126361-23126481 43 7.06e-05 ATCGCAAGCA ATGTGACC GCAGACAGGT chr2L:10968089-10968209 70 7.06e-05 CACTAAAGCA ATGTGACC AGAGTACGTA chr2L:10977029-10977149 57 7.06e-05 AGATACCTTT GTGTGTGC ATTGTTGCGA chr3R:22491215-22491335 50 8.60e-05 TCACCGTTCT GTGTGCGC ACCGATGCGC chr2L:6920965-6921085 21 8.60e-05 CCATTGCTCG GTGTGCGC GTGTGTTTGT chr3L:211353-211473 91 9.94e-05 AGCTTTTTTA GTGTGACT GCACGCCGGA chr4:866719-866839 104 9.94e-05 TTTTTGATTT GTGTGACT TTATCACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21616819-21616939 1e-05 45_[+1]_67 chr2L:9963714-9963834 1e-05 38_[+1]_74 chr3R:25033347-25033467 1e-05 104_[+1]_8 chr3L:1496579-1496699 1e-05 38_[+1]_74 chr2R:21009518-21009638 1e-05 34_[+1]_78 chr2R:12184239-12184359 1e-05 38_[+1]_74 chr2R:9882233-9882353 1e-05 112_[+1] chr3L:16121926-16122046 1e-05 48_[+1]_64 chr3R:29491056-29491176 1e-05 60_[+1]_52 chr2R:24775218-24775338 1e-05 24_[+1]_88 chr3L:22878080-22878200 2.1e-05 109_[+1]_3 chr3R:9630161-9630281 2.1e-05 28_[+1]_84 chr3R:25983377-25983497 3.1e-05 104_[+1]_8 chrX:6276667-6276787 4.7e-05 51_[+1]_61 chr3R:26966946-26967066 4.7e-05 102_[+1]_10 chrX:6350257-6350377 4.7e-05 103_[+1]_9 chr3L:5561510-5561630 4.7e-05 68_[+1]_44 chr2R:17535549-17535669 7.1e-05 111_[+1]_1 chr3R:5659419-5659539 7.1e-05 18_[+1]_94 chr2R:16868301-16868421 7.1e-05 23_[+1]_89 chr3R:23126361-23126481 7.1e-05 42_[+1]_70 chr2L:10968089-10968209 7.1e-05 69_[+1]_43 chr2L:10977029-10977149 7.1e-05 56_[+1]_56 chr3R:22491215-22491335 8.6e-05 49_[+1]_63 chr2L:6920965-6921085 8.6e-05 20_[+1]_92 chr3L:211353-211473 9.9e-05 90_[+1]_22 chr4:866719-866839 9.9e-05 103_[+1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGACC width=8 seqs=27 chr2R:21616819-21616939 ( 46) GTGTGACC 1 chr2L:9963714-9963834 ( 39) GTGTGACC 1 chr3R:25033347-25033467 ( 105) GTGTGACC 1 chr3L:1496579-1496699 ( 39) GTGTGACC 1 chr2R:21009518-21009638 ( 35) GTGTGACC 1 chr2R:12184239-12184359 ( 39) GTGTGACC 1 chr2R:9882233-9882353 ( 113) GTGTGACC 1 chr3L:16121926-16122046 ( 49) GTGTGACC 1 chr3R:29491056-29491176 ( 61) GTGTGACC 1 chr2R:24775218-24775338 ( 25) GTGTGACC 1 chr3L:22878080-22878200 ( 110) GTGTGTCC 1 chr3R:9630161-9630281 ( 29) GTGTGTCC 1 chr3R:25983377-25983497 ( 105) GTGTGAGC 1 chrX:6276667-6276787 ( 52) GTGTGGCC 1 chr3R:26966946-26967066 ( 103) GTGTGCCC 1 chrX:6350257-6350377 ( 104) GTGTGGCC 1 chr3L:5561510-5561630 ( 69) GTGTGGCC 1 chr2R:17535549-17535669 ( 112) GTGTGTGC 1 chr3R:5659419-5659539 ( 19) GTGTGTGC 1 chr2R:16868301-16868421 ( 24) ATGTGACC 1 chr3R:23126361-23126481 ( 43) ATGTGACC 1 chr2L:10968089-10968209 ( 70) ATGTGACC 1 chr2L:10977029-10977149 ( 57) GTGTGTGC 1 chr3R:22491215-22491335 ( 50) GTGTGCGC 1 chr2L:6920965-6921085 ( 21) GTGTGCGC 1 chr3L:211353-211473 ( 91) GTGTGACT 1 chr4:866719-866839 ( 104) GTGTGACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2246 E= 1.2e-002 -138 -1140 205 -1140 -1140 -1140 -1140 184 -1140 -1140 222 -1140 -1140 -1140 -1140 184 -1140 -1140 222 -1140 104 -97 -94 -59 -1140 183 6 -1140 -1140 208 -1140 -191 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.2e-002 0.111111 0.000000 0.888889 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.592593 0.111111 0.111111 0.185185 0.000000 0.777778 0.222222 0.000000 0.000000 0.925926 0.000000 0.074074 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 regular expression -------------------------------------------------------------------------------- GTGTGA[CG]C -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTCACAC MEME-2 width = 8 sites = 12 llr = 132 E-value = 1.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::a:a: pos.-specific C ::2a:a:a probability G aa:::::: matrix T ::8::::: bits 2.2 ** * * * 2.0 ** * * * 1.8 ** ***** 1.6 ** ***** Relative 1.3 ******** Entropy 1.1 ******** (15.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGTCACAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:18137104-18137224 56 1.11e-05 TAAGAAGAAC GGTCACAC TGGCCCGTGC chr2R:10875731-10875851 23 1.11e-05 AATAGGATCT GGTCACAC AACCTGCCTT chr2L:13813792-13813912 51 1.11e-05 GCCGCACTCT GGTCACAC CGCGAAAAAT chr2R:8893591-8893711 34 1.11e-05 CTCAGAGCAC GGTCACAC TGGCCGTTCC chrX:6276667-6276787 86 1.11e-05 GGAGTCAGCT GGTCACAC AAAATACCCC chr3R:31617909-31618029 75 1.11e-05 TCATGAGCCT GGTCACAC TGTCTTGCAC chr2L:3452426-3452546 40 1.11e-05 CCTGCCCTAC GGTCACAC CGAACACAAC chr2R:21097286-21097406 92 1.11e-05 TATATTATAC GGTCACAC TAGGCACAAG chr2R:17518162-17518282 57 1.11e-05 TGCGTGCTCT GGTCACAC TGCGCAGCAC chr3R:12413741-12413861 80 1.11e-05 TCCCAAGTCT GGTCACAC TGGAAGTGGC chrX:9149255-9149375 68 1.97e-05 AATCAGATAC GGCCACAC CTCCACCAAC chr2L:6476933-6477053 98 1.97e-05 CTTTTAATTT GGCCACAC CAGTAATTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:18137104-18137224 1.1e-05 55_[+2]_57 chr2R:10875731-10875851 1.1e-05 22_[+2]_90 chr2L:13813792-13813912 1.1e-05 50_[+2]_62 chr2R:8893591-8893711 1.1e-05 33_[+2]_79 chrX:6276667-6276787 1.1e-05 85_[+2]_27 chr3R:31617909-31618029 1.1e-05 74_[+2]_38 chr2L:3452426-3452546 1.1e-05 39_[+2]_73 chr2R:21097286-21097406 1.1e-05 91_[+2]_21 chr2R:17518162-17518282 1.1e-05 56_[+2]_56 chr3R:12413741-12413861 1.1e-05 79_[+2]_33 chrX:9149255-9149375 2e-05 67_[+2]_45 chr2L:6476933-6477053 2e-05 97_[+2]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTCACAC width=8 seqs=12 chrX:18137104-18137224 ( 56) GGTCACAC 1 chr2R:10875731-10875851 ( 23) GGTCACAC 1 chr2L:13813792-13813912 ( 51) GGTCACAC 1 chr2R:8893591-8893711 ( 34) GGTCACAC 1 chrX:6276667-6276787 ( 86) GGTCACAC 1 chr3R:31617909-31618029 ( 75) GGTCACAC 1 chr2L:3452426-3452546 ( 40) GGTCACAC 1 chr2R:21097286-21097406 ( 92) GGTCACAC 1 chr2R:17518162-17518282 ( 57) GGTCACAC 1 chr3R:12413741-12413861 ( 80) GGTCACAC 1 chrX:9149255-9149375 ( 68) GGCCACAC 1 chr2L:6476933-6477053 ( 98) GGCCACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8592 E= 1.4e+000 -1023 -1023 222 -1023 -1023 -1023 222 -1023 -1023 -39 -1023 158 -1023 220 -1023 -1023 179 -1023 -1023 -1023 -1023 220 -1023 -1023 179 -1023 -1023 -1023 -1023 220 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.4e+000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 regular expression -------------------------------------------------------------------------------- GGTCACAC -------------------------------------------------------------------------------- Time 13.73 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGRGSG MEME-3 width = 8 sites = 11 llr = 119 E-value = 5.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGRGSG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::4::: pos.-specific C :a::::5: probability G a:aa6a5a matrix T :::::::: bits 2.2 **** * * 2.0 **** * * 1.8 **** * * 1.6 **** * * Relative 1.3 **** * * Entropy 1.1 ******** (15.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGGGGGG consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGRGSG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13830083-13830203 35 4.48e-06 GTCTCGCTCT GCGGGGGG GACGCCGCCC chr2L:542466-542586 20 4.48e-06 ATTTGCAATC GCGGGGGG AACTCGCGCT chrX:10857954-10858074 109 4.48e-06 CATTGTCGGG GCGGGGGG GTTG chr2R:16336320-16336440 92 4.48e-06 TTTTTTTTCG GCGGGGGG TAACTTTTGC chr2R:19395340-19395460 2 9.05e-06 G GCGGGGCG GCAGCATAAC chr3R:29933237-29933357 39 9.05e-06 GAATATGCTC GCGGGGCG TTTTGGTATT chr2R:15939783-15939903 76 9.05e-06 TGGGGCTTCT GCGGGGCG AGCCGCATTT chr3L:22871129-22871249 46 1.51e-05 GAAGCTCCAG GCGGAGGG CGTCACTGCT chr2L:12096385-12096505 2 1.51e-05 G GCGGAGGG GCTGTTTTTC chr3L:12146583-12146703 91 2.13e-05 TCGATTTAAA GCGGAGCG TAAAGTGCAG chr3L:9487685-9487805 51 2.13e-05 CTAGTTTCGA GCGGAGCG ATTATAGTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGRGSG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13830083-13830203 4.5e-06 34_[+3]_78 chr2L:542466-542586 4.5e-06 19_[+3]_93 chrX:10857954-10858074 4.5e-06 108_[+3]_4 chr2R:16336320-16336440 4.5e-06 91_[+3]_21 chr2R:19395340-19395460 9e-06 1_[+3]_111 chr3R:29933237-29933357 9e-06 38_[+3]_74 chr2R:15939783-15939903 9e-06 75_[+3]_37 chr3L:22871129-22871249 1.5e-05 45_[+3]_67 chr2L:12096385-12096505 1.5e-05 1_[+3]_111 chr3L:12146583-12146703 2.1e-05 90_[+3]_22 chr3L:9487685-9487805 2.1e-05 50_[+3]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGRGSG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGRGSG width=8 seqs=11 chrX:13830083-13830203 ( 35) GCGGGGGG 1 chr2L:542466-542586 ( 20) GCGGGGGG 1 chrX:10857954-10858074 ( 109) GCGGGGGG 1 chr2R:16336320-16336440 ( 92) GCGGGGGG 1 chr2R:19395340-19395460 ( 2) GCGGGGCG 1 chr3R:29933237-29933357 ( 39) GCGGGGCG 1 chr2R:15939783-15939903 ( 76) GCGGGGCG 1 chr3L:22871129-22871249 ( 46) GCGGAGGG 1 chr2L:12096385-12096505 ( 2) GCGGAGGG 1 chr3L:12146583-12146703 ( 91) GCGGAGCG 1 chr3L:9487685-9487805 ( 51) GCGGAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGRGSG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 5.3e+001 -1010 -1010 222 -1010 -1010 220 -1010 -1010 -1010 -1010 222 -1010 -1010 -1010 222 -1010 33 -1010 157 -1010 -1010 -1010 222 -1010 -1010 106 135 -1010 -1010 -1010 222 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGRGSG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 5.3e+001 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.363636 0.000000 0.636364 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.454545 0.545455 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGRGSG MEME-3 regular expression -------------------------------------------------------------------------------- GCGG[GA]G[GC]G -------------------------------------------------------------------------------- Time 19.95 secs. ******************************************************************************** ******************************************************************************** MOTIF MGCCGCVS MEME-4 width = 8 sites = 23 llr = 216 E-value = 9.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif MGCCGCVS MEME-4 Description -------------------------------------------------------------------------------- Simplified A 3:::::3: pos.-specific C 6:aa:a43 probability G 1a::a:27 matrix T :::::::: bits 2.2 ***** 2.0 ***** 1.8 ***** 1.6 ***** Relative 1.3 ***** * Entropy 1.1 ***** * (13.6 bits) 0.9 ***** * 0.7 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCCGCCG consensus A AC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCCGCVS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6694514-6694634 11 4.83e-06 CAATTGGCGC CGCCGCCG CGCTGCTTCT chr3R:17540574-17540694 61 4.83e-06 ATGAGCGCCA CGCCGCCG GACCTACTTT chr2R:11452626-11452746 74 4.83e-06 TTATCGTTAT CGCCGCCG ACGGCACAAA chr3L:20771649-20771769 52 1.12e-05 GCCAGGCGAA CGCCGCAG AAACCTGCCA chr2R:18157830-18157950 39 1.12e-05 GCCTGCCGAC CGCCGCAG GAGCACGCTA chrX:17657480-17657600 70 1.12e-05 AAGTGAAAGT CGCCGCAG TGCAGTAAAA chrX:13830083-13830203 45 2.09e-05 GCGGGGGGGA CGCCGCCC CGAAATCAAC chr3R:17546308-17546428 1 2.09e-05 . CGCCGCGG CATGTTTTCG chr2R:14164432-14164552 12 2.09e-05 TCGGGCAAGG CGCCGCCC GAATTCATGG chr2R:24515102-24515222 69 2.73e-05 CCTATAATTT AGCCGCCG ATTACATCGA chrX:10213093-10213213 82 2.73e-05 ACGCAATAGC AGCCGCCG CCTAACCTAC chr3L:7339609-7339729 87 2.73e-05 TGTGAACTCT AGCCGCCG CCATCTTTTT chr2L:2151852-2151972 110 3.38e-05 ACGTTTCTTT CGCCGCAC AAC chrX:1868772-1868892 90 3.86e-05 TAAAATATAT CGCCGCGC AAAATCTTAT chr3R:28811121-28811241 34 3.86e-05 TGTCTTTGTT CGCCGCGC CGCTGACGCT chr3R:9630161-9630281 54 3.86e-05 TACGAATGCG CGCCGCGC GGAGGTGGGG chr2L:1080990-1081110 3 5.18e-05 CC AGCCGCAG ACTGATCAAA chrX:8905911-8906031 85 5.18e-05 AAGGAGTAAC GGCCGCCG CGTGTGTGTA chr3R:8805529-8805649 22 5.18e-05 AGGAAATTTT AGCCGCAG CAACGCGTGT chr2L:2979231-2979351 56 5.18e-05 GAAACAGCTG AGCCGCAG ATGCATGTGC chr2L:19041821-19041941 88 7.09e-05 ACAACACTTT GGCCGCAG TCCGACGCGA chr3L:3223535-3223655 49 8.90e-05 ACATAAAAAT GGCCGCCC TGACGGTCAT chr2R:14601154-14601274 21 9.54e-05 TGAGCGCAAC AGCCGCGC ACGTGTGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCCGCVS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6694514-6694634 4.8e-06 10_[+4]_102 chr3R:17540574-17540694 4.8e-06 60_[+4]_52 chr2R:11452626-11452746 4.8e-06 73_[+4]_39 chr3L:20771649-20771769 1.1e-05 51_[+4]_61 chr2R:18157830-18157950 1.1e-05 38_[+4]_74 chrX:17657480-17657600 1.1e-05 69_[+4]_43 chrX:13830083-13830203 2.1e-05 44_[+4]_68 chr3R:17546308-17546428 2.1e-05 [+4]_112 chr2R:14164432-14164552 2.1e-05 11_[+4]_101 chr2R:24515102-24515222 2.7e-05 68_[+4]_44 chrX:10213093-10213213 2.7e-05 81_[+4]_31 chr3L:7339609-7339729 2.7e-05 86_[+4]_26 chr2L:2151852-2151972 3.4e-05 109_[+4]_3 chrX:1868772-1868892 3.9e-05 89_[+4]_23 chr3R:28811121-28811241 3.9e-05 33_[+4]_79 chr3R:9630161-9630281 3.9e-05 53_[+4]_59 chr2L:1080990-1081110 5.2e-05 2_[+4]_110 chrX:8905911-8906031 5.2e-05 84_[+4]_28 chr3R:8805529-8805649 5.2e-05 21_[+4]_91 chr2L:2979231-2979351 5.2e-05 55_[+4]_57 chr2L:19041821-19041941 7.1e-05 87_[+4]_25 chr3L:3223535-3223655 8.9e-05 48_[+4]_64 chr2R:14601154-14601274 9.5e-05 20_[+4]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCCGCVS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MGCCGCVS width=8 seqs=23 chrX:6694514-6694634 ( 11) CGCCGCCG 1 chr3R:17540574-17540694 ( 61) CGCCGCCG 1 chr2R:11452626-11452746 ( 74) CGCCGCCG 1 chr3L:20771649-20771769 ( 52) CGCCGCAG 1 chr2R:18157830-18157950 ( 39) CGCCGCAG 1 chrX:17657480-17657600 ( 70) CGCCGCAG 1 chrX:13830083-13830203 ( 45) CGCCGCCC 1 chr3R:17546308-17546428 ( 1) CGCCGCGG 1 chr2R:14164432-14164552 ( 12) CGCCGCCC 1 chr2R:24515102-24515222 ( 69) AGCCGCCG 1 chrX:10213093-10213213 ( 82) AGCCGCCG 1 chr3L:7339609-7339729 ( 87) AGCCGCCG 1 chr2L:2151852-2151972 ( 110) CGCCGCAC 1 chrX:1868772-1868892 ( 90) CGCCGCGC 1 chr3R:28811121-28811241 ( 34) CGCCGCGC 1 chr3R:9630161-9630281 ( 54) CGCCGCGC 1 chr2L:1080990-1081110 ( 3) AGCCGCAG 1 chrX:8905911-8906031 ( 85) GGCCGCCG 1 chr3R:8805529-8805649 ( 22) AGCCGCAG 1 chr2L:2979231-2979351 ( 56) AGCCGCAG 1 chr2L:19041821-19041941 ( 88) GGCCGCAG 1 chr3L:3223535-3223655 ( 49) GGCCGCCC 1 chr2R:14601154-14601274 ( 21) AGCCGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCCGCVS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 9.8e+000 8 137 -71 -1117 -1117 -1117 222 -1117 -1117 220 -1117 -1117 -1117 220 -1117 -1117 -1117 -1117 222 -1117 -1117 220 -1117 -1117 27 99 2 -1117 -1117 67 161 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCCGCVS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 9.8e+000 0.304348 0.565217 0.130435 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.347826 0.434783 0.217391 0.000000 0.000000 0.347826 0.652174 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCCGCVS MEME-4 regular expression -------------------------------------------------------------------------------- [CA]GCCGC[CAG][GC] -------------------------------------------------------------------------------- Time 26.17 secs. ******************************************************************************** ******************************************************************************** MOTIF AWCAGCTG MEME-5 width = 8 sites = 24 llr = 225 E-value = 1.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 85:a:::: pos.-specific C 21a::a:: probability G :2::a::a matrix T :3::::a: bits 2.2 * ** * 2.0 * ** * 1.8 * **** 1.6 ****** Relative 1.3 ****** Entropy 1.1 * ****** (13.5 bits) 0.9 * ****** 0.7 * ****** 0.4 * ****** 0.2 * ****** 0.0 -------- Multilevel AACAGCTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:18442778-18442898 45 1.47e-05 TGTCAACCCA AACAGCTG CCCATGGCCA chrX:9159840-9159960 111 1.47e-05 GAACAAACCA AACAGCTG AT chr2R:23693949-23694069 42 1.47e-05 AAGAAGTGAA AACAGCTG ACAGCAGCAG chr2L:4973972-4974092 17 1.47e-05 TTCACATACG AACAGCTG TTTTTTCCAA chr3R:31736955-31737075 97 1.47e-05 GGTCACTCCT AACAGCTG CAACACGTGC chr3R:15786660-15786780 25 1.47e-05 GTTGGCGTGT AACAGCTG TTAAGTCTGC chr2L:2979231-2979351 48 1.47e-05 CGAAGTTCGA AACAGCTG AGCCGCAGAT chr2R:21025074-21025194 35 1.47e-05 TACACTGGCG AACAGCTG TTTTTTGTCA chr2R:14860737-14860857 23 2.88e-05 CTTTTGTGGT ATCAGCTG TTTGGCGAGT chr3L:21529240-21529360 56 2.88e-05 ACTTGGATCT ATCAGCTG ATTAGTATTA chr3R:30425168-30425288 31 2.88e-05 CAGATGTGTA ATCAGCTG TTCTCTTCGA chr2R:17518162-17518282 15 2.88e-05 AGACGCACAA ATCAGCTG TTTGTTTTTA chr2R:18446490-18446610 57 2.88e-05 CGCACACCTT ATCAGCTG AATTTGTTGC chr3R:30166341-30166461 10 2.88e-05 GCCACGAGA ATCAGCTG CATTCTGGAG chr2R:21009518-21009638 24 3.97e-05 CTATTATTTT AGCAGCTG GCAGTGTGAC chr2R:18614944-18615064 101 3.97e-05 ATCGATTATT AGCAGCTG CGTCGGCTCA chr3R:22365898-22366018 103 5.07e-05 GCGATTGGCA ACCAGCTG ACATATTCTG chr3L:20769528-20769648 14 5.07e-05 CATCCCGGGC ACCAGCTG TCCATCAAGT chr2L:11120211-11120331 93 5.07e-05 GTTGACAGGC ACCAGCTG TTTGTCTTAT chr3L:16348053-16348173 21 6.18e-05 AGCCAGCCGG CACAGCTG TTCGACCTTC chr3L:17849671-17849791 27 6.18e-05 TATCACTGTT CACAGCTG TCGTACCGGC chr2L:6920965-6921085 3 8.06e-05 GA CGCAGCTG CCATTGCTCG chrX:6684212-6684332 37 8.06e-05 cacttcgccc cgcagctg caccacaacc chrX:18137104-18137224 88 1.03e-04 AACAGGGCCG AACTGCTG ATTTAACAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18442778-18442898 1.5e-05 44_[+5]_68 chrX:9159840-9159960 1.5e-05 110_[+5]_2 chr2R:23693949-23694069 1.5e-05 41_[+5]_71 chr2L:4973972-4974092 1.5e-05 16_[+5]_96 chr3R:31736955-31737075 1.5e-05 96_[+5]_16 chr3R:15786660-15786780 1.5e-05 24_[+5]_88 chr2L:2979231-2979351 1.5e-05 47_[+5]_65 chr2R:21025074-21025194 1.5e-05 34_[+5]_78 chr2R:14860737-14860857 2.9e-05 22_[+5]_90 chr3L:21529240-21529360 2.9e-05 55_[+5]_57 chr3R:30425168-30425288 2.9e-05 30_[+5]_82 chr2R:17518162-17518282 2.9e-05 14_[+5]_98 chr2R:18446490-18446610 2.9e-05 56_[+5]_56 chr3R:30166341-30166461 2.9e-05 9_[+5]_103 chr2R:21009518-21009638 4e-05 23_[+5]_89 chr2R:18614944-18615064 4e-05 100_[+5]_12 chr3R:22365898-22366018 5.1e-05 102_[+5]_10 chr3L:20769528-20769648 5.1e-05 13_[+5]_99 chr2L:11120211-11120331 5.1e-05 92_[+5]_20 chr3L:16348053-16348173 6.2e-05 20_[+5]_92 chr3L:17849671-17849791 6.2e-05 26_[+5]_86 chr2L:6920965-6921085 8.1e-05 2_[+5]_110 chrX:6684212-6684332 8.1e-05 36_[+5]_76 chrX:18137104-18137224 0.0001 87_[+5]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWCAGCTG width=8 seqs=24 chr2R:18442778-18442898 ( 45) AACAGCTG 1 chrX:9159840-9159960 ( 111) AACAGCTG 1 chr2R:23693949-23694069 ( 42) AACAGCTG 1 chr2L:4973972-4974092 ( 17) AACAGCTG 1 chr3R:31736955-31737075 ( 97) AACAGCTG 1 chr3R:15786660-15786780 ( 25) AACAGCTG 1 chr2L:2979231-2979351 ( 48) AACAGCTG 1 chr2R:21025074-21025194 ( 35) AACAGCTG 1 chr2R:14860737-14860857 ( 23) ATCAGCTG 1 chr3L:21529240-21529360 ( 56) ATCAGCTG 1 chr3R:30425168-30425288 ( 31) ATCAGCTG 1 chr2R:17518162-17518282 ( 15) ATCAGCTG 1 chr2R:18446490-18446610 ( 57) ATCAGCTG 1 chr3R:30166341-30166461 ( 10) ATCAGCTG 1 chr2R:21009518-21009638 ( 24) AGCAGCTG 1 chr2R:18614944-18615064 ( 101) AGCAGCTG 1 chr3R:22365898-22366018 ( 103) ACCAGCTG 1 chr3L:20769528-20769648 ( 14) ACCAGCTG 1 chr2L:11120211-11120331 ( 93) ACCAGCTG 1 chr3L:16348053-16348173 ( 21) CACAGCTG 1 chr3L:17849671-17849791 ( 27) CACAGCTG 1 chr2L:6920965-6921085 ( 3) CGCAGCTG 1 chrX:6684212-6684332 ( 37) CGCAGCTG 1 chrX:18137104-18137224 ( 88) AACTGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.85841 E= 1.7e-001 153 -39 -1123 -1123 67 -80 -36 -16 -1123 220 -1123 -1123 173 -1123 -1123 -274 -1123 -1123 222 -1123 -1123 220 -1123 -1123 -1123 -1123 -1123 184 -1123 -1123 222 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.7e-001 0.833333 0.166667 0.000000 0.000000 0.458333 0.125000 0.166667 0.250000 0.000000 1.000000 0.000000 0.000000 0.958333 0.000000 0.000000 0.041667 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 regular expression -------------------------------------------------------------------------------- A[AT]CAGCTG -------------------------------------------------------------------------------- Time 32.37 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3902269-3902389 7.41e-01 120 chr2R:7962494-7962614 5.32e-01 120 chr2R:24775218-24775338 7.97e-02 24_[+1(1.05e-05)]_88 chr2L:10977029-10977149 2.62e-02 56_[+1(7.06e-05)]_56 chr3R:14890497-14890617 9.97e-01 120 chr3L:6955397-6955517 6.50e-01 120 chr2R:22799502-22799622 6.64e-01 120 chr2R:8906820-8906940 2.52e-01 120 chr2R:16336320-16336440 2.10e-02 91_[+3(4.48e-06)]_21 chrX:10220161-10220281 6.55e-01 120 chrX:17657480-17657600 3.07e-03 69_[+4(1.12e-05)]_43 chr4:866719-866839 1.45e-01 103_[+1(9.94e-05)]_9 chr2R:12613065-12613185 4.82e-01 120 chr3R:16647769-16647889 1.37e-01 120 chr2R:14152620-14152740 5.47e-02 120 chrX:11128964-11129084 3.68e-01 120 chr2R:11970704-11970824 4.29e-01 120 chr2R:12916346-12916466 5.61e-01 120 chr2L:10976284-10976404 5.84e-01 120 chr2R:11452424-11452544 4.33e-01 120 chr2R:14870707-14870827 1.00e+00 120 chr3L:4627118-4627238 4.27e-02 120 chr2L:8043485-8043605 1.18e-01 120 chr3R:29491056-29491176 9.03e-04 60_[+1(1.05e-05)]_52 chr3L:7339609-7339729 3.66e-02 86_[+4(2.73e-05)]_26 chr2L:19123618-19123738 7.79e-01 120 chr2R:23949332-23949452 9.97e-01 120 chr2R:14164432-14164552 5.01e-02 11_[+4(2.09e-05)]_101 chr3L:16121926-16122046 7.06e-02 48_[+1(1.05e-05)]_64 chr3R:28600677-28600797 5.77e-01 120 chr3R:9630161-9630281 2.71e-04 28_[+1(2.06e-05)]_17_[+4(3.86e-05)]_\ 59 chr3R:30166341-30166461 1.51e-02 9_[+5(2.88e-05)]_103 chr2L:19064870-19064990 4.74e-01 120 chr2L:4227720-4227840 6.31e-01 120 chr2R:11452626-11452746 8.40e-03 73_[+4(4.83e-06)]_39 chr3L:4283861-4283981 1.73e-01 120 chr2R:14504188-14504308 6.40e-01 120 chr3R:6456406-6456526 7.03e-01 120 chr3R:12413741-12413861 8.51e-03 79_[+2(1.11e-05)]_33 chr3L:20241259-20241379 8.22e-01 120 chr2L:19958948-19959068 8.74e-01 120 chr2R:9882233-9882353 1.79e-02 112_[+1(1.05e-05)] chr2R:9400109-9400229 3.27e-01 120 chr4:205677-205797 8.96e-01 120 chr2R:18157830-18157950 1.80e-02 38_[+4(1.12e-05)]_74 chr2L:10968089-10968209 3.07e-01 69_[+1(7.06e-05)]_43 chr2R:14504393-14504513 3.42e-01 120 chr2R:21635022-21635142 2.88e-01 120 chr3L:20771649-20771769 9.33e-03 51_[+4(1.12e-05)]_61 chrX:3881036-3881156 7.30e-02 120 chrX:6267939-6268059 1.44e-01 120 chr2R:5663005-5663125 3.84e-01 120 chr2R:10049572-10049692 4.30e-01 120 chr3L:5561510-5561630 2.09e-03 68_[+1(4.65e-05)]_44 chr2R:14870915-14871035 8.76e-01 120 chr2L:6476933-6477053 2.10e-02 97_[+2(1.97e-05)]_15 chr3L:211353-211473 6.92e-02 90_[+1(9.94e-05)]_22 chrX:6684212-6684332 5.46e-02 36_[+5(8.06e-05)]_76 chr2R:23544004-23544124 5.16e-01 120 chr2R:22185968-22186088 3.88e-01 120 chr3L:7654557-7654677 5.10e-01 120 chr3R:23126361-23126481 2.19e-02 42_[+1(7.06e-05)]_70 chrX:6350257-6350377 8.04e-02 103_[+1(4.65e-05)]_9 chrX:11359370-11359490 9.01e-02 120 chr3R:31218616-31218736 3.27e-01 120 chrX:10082325-10082445 9.10e-01 120 chr2R:20640905-20641025 3.95e-01 120 chr2R:16868301-16868421 4.58e-03 23_[+1(7.06e-05)]_89 chrX:9089723-9089843 3.04e-01 120 chr2L:10263332-10263452 6.70e-01 120 chr2L:18698680-18698800 5.39e-01 120 chr2L:6724181-6724301 7.85e-02 120 chr3R:28606000-28606120 4.94e-02 120 chr3R:19095197-19095317 7.21e-01 120 chr2R:15939783-15939903 1.40e-02 75_[+3(9.05e-06)]_37 chr2R:7806749-7806869 1.47e-01 120 chr3L:16112171-16112291 1.25e-02 120 chr3R:29933237-29933357 3.75e-03 38_[+3(9.05e-06)]_29_[+2(3.96e-05)]_\ 37 chr3L:14006880-14007000 8.67e-01 120 chr3R:11949732-11949852 1.87e-01 120 chrX:11148299-11148419 2.42e-02 120 chr2R:9577703-9577823 5.30e-01 120 chr3L:3223535-3223655 1.22e-01 48_[+4(8.90e-05)]_64 chr2R:12175170-12175290 9.30e-01 120 chr2L:11282038-11282158 8.06e-01 120 chrX:3880837-3880957 1.66e-01 120 chr3R:4232185-4232305 2.69e-01 120 chr4:360139-360259 9.75e-01 120 chr3L:17849671-17849791 1.98e-01 26_[+5(6.18e-05)]_86 chr3R:32052666-32052786 4.27e-01 120 chr2R:8925612-8925732 5.32e-01 120 chr2L:6945258-6945378 8.21e-01 120 chr2R:21025074-21025194 2.76e-02 34_[+5(1.47e-05)]_78 chr2R:13826518-13826638 6.24e-01 120 chr3L:9624201-9624321 5.77e-01 120 chr3R:17540574-17540694 6.70e-03 60_[+4(4.83e-06)]_35_[+4(5.18e-05)]_\ 9 chr2R:13220337-13220457 7.81e-01 120 chr2R:18446490-18446610 3.19e-02 56_[+5(2.88e-05)]_56 chr2L:6920965-6921085 4.90e-03 2_[+5(8.06e-05)]_10_[+1(8.60e-05)]_\ 92 chr2R:17518162-17518282 1.40e-04 14_[+5(2.88e-05)]_34_[+2(1.11e-05)]_\ 56 chr3R:18166312-18166432 1.05e-01 120 chr3R:27700283-27700403 4.76e-02 120 chr3L:18683918-18684038 8.60e-01 120 chr3L:4405987-4406107 8.46e-01 120 chr2R:21658010-21658130 1.43e-01 120 chr3L:21554889-21555009 3.21e-01 120 chr4:358267-358387 7.96e-01 120 chrX:15992567-15992687 9.66e-01 120 chr2L:4968894-4969014 8.81e-01 120 chrX:18864079-18864199 6.28e-01 120 chr2R:24664590-24664710 3.88e-01 120 chr3R:20577012-20577132 9.20e-01 120 chr3R:17546308-17546428 6.40e-02 [+4(2.09e-05)]_112 chr3R:26966946-26967066 7.48e-02 102_[+1(4.65e-05)]_10 chrX:10213093-10213213 5.79e-03 81_[+4(2.73e-05)]_31 chr2L:11120211-11120331 1.91e-01 92_[+5(5.07e-05)]_20 chr3R:11590074-11590194 1.22e-01 120 chr2L:21169020-21169140 2.85e-01 120 chr2R:8614901-8615021 9.80e-01 120 chr2L:2979231-2979351 8.75e-05 47_[+5(1.47e-05)]_[+4(5.18e-05)]_57 chr3L:5360679-5360799 7.22e-02 120 chr2R:12179753-12179873 7.75e-01 120 chr2L:6966484-6966604 5.04e-01 120 chr3R:15786660-15786780 1.07e-01 24_[+5(1.47e-05)]_88 chr3R:24230822-24230942 7.66e-02 120 chrX:9149255-9149375 4.88e-02 67_[+2(1.97e-05)]_45 chr3R:28811121-28811241 3.78e-02 33_[+4(3.86e-05)]_79 chr2R:19395340-19395460 5.62e-03 1_[+3(9.05e-06)]_111 chr3R:27947834-27947954 1.51e-02 120 chr3R:8805529-8805649 6.48e-02 21_[+4(5.18e-05)]_91 chr2L:8123800-8123920 5.68e-01 120 chrX:11616367-11616487 9.61e-01 120 chrX:14226243-14226363 2.86e-01 120 chrX:6534179-6534299 1.45e-01 120 chr2R:18134485-18134605 9.72e-01 120 chrX:6089935-6090055 3.38e-01 120 chrX:19731024-19731144 3.39e-01 120 chrX:22540237-22540357 7.19e-01 120 chr2R:21097286-21097406 1.95e-02 91_[+2(1.11e-05)]_21 chr3R:5483744-5483864 6.76e-01 120 chr2L:3452426-3452546 1.18e-01 39_[+2(1.11e-05)]_73 chr3L:13046966-13047086 3.15e-01 120 chr2R:12184239-12184359 1.07e-03 38_[+1(1.05e-05)]_74 chr2L:3514621-3514741 1.95e-01 120 chr3R:31617909-31618029 4.11e-02 74_[+2(1.11e-05)]_38 chr3R:27283713-27283833 7.51e-01 120 chr2R:24874867-24874987 9.75e-01 120 chr4:571905-572025 9.91e-01 120 chr3R:12981108-12981228 6.09e-01 120 chr3R:13382731-13382851 1.17e-01 120 chrX:15849122-15849242 9.12e-01 120 chr3L:17024352-17024472 9.99e-01 120 chr2R:24098421-24098541 2.44e-01 120 chrX:10857954-10858074 4.39e-03 108_[+3(4.48e-06)]_4 chr3R:31736955-31737075 7.95e-03 86_[+2(9.40e-05)]_2_[+5(1.47e-05)]_\ 16 chr3L:835577-835697 3.03e-01 120 chr2L:2151852-2151972 1.59e-01 109_[+4(3.38e-05)]_3 chr2L:4973972-4974092 6.77e-02 16_[+5(1.47e-05)]_96 chrX:2225264-2225384 8.42e-01 120 chrX:6698386-6698506 4.31e-01 120 chr2R:13861893-13862013 1.42e-01 120 chrX:6276667-6276787 5.33e-04 51_[+1(4.65e-05)]_26_[+2(1.11e-05)]_\ 27 chr3R:5659419-5659539 2.92e-03 18_[+1(7.06e-05)]_94 chr3R:9628752-9628872 5.58e-01 120 chr3R:24186333-24186453 2.58e-01 120 chr2R:18614944-18615064 1.02e-01 100_[+5(3.97e-05)]_12 chrX:8905911-8906031 4.83e-03 84_[+4(5.18e-05)]_28 chr2R:24535378-24535498 8.28e-01 120 chr2R:7917072-7917192 3.18e-01 120 chr3L:17425602-17425722 2.18e-01 120 chr2L:1080990-1081110 2.16e-02 2_[+4(5.18e-05)]_110 chr2R:8893591-8893711 1.15e-01 33_[+2(1.11e-05)]_79 chr3L:20436186-20436306 8.12e-02 120 chrX:19522801-19522921 1.62e-01 120 chr3R:11237788-11237908 5.08e-01 120 chr2R:12923784-12923904 1.18e-01 120 chr3L:5136243-5136363 5.34e-01 120 chr2R:21009518-21009638 2.08e-03 23_[+5(3.97e-05)]_3_[+1(1.05e-05)]_\ 78 chr3L:20769528-20769648 1.38e-01 13_[+5(5.07e-05)]_99 chr2L:13793571-13793691 1.75e-01 120 chr3R:31060819-31060939 1.82e-01 120 chr2R:10049778-10049898 8.89e-02 120 chr2L:4444668-4444788 3.62e-01 120 chr3L:22878080-22878200 4.35e-03 109_[+1(2.06e-05)]_3 chrX:18650391-18650511 4.28e-02 83_[+2(9.40e-05)]_29 chr3L:1502522-1502642 7.57e-01 120 chr2R:23693949-23694069 4.13e-02 41_[+5(1.47e-05)]_71 chrX:12903159-12903279 5.09e-01 120 chr3R:18252718-18252838 4.96e-02 120 chr2R:22415715-22415835 2.63e-01 120 chr3R:7080236-7080356 3.68e-01 120 chr3L:9072548-9072668 8.01e-01 120 chrX:5873326-5873446 7.89e-01 120 chr3R:12356137-12356257 6.46e-01 120 chr2R:23707015-23707135 9.42e-02 120 chr2R:17001938-17002058 7.04e-01 120 chr2R:8952423-8952543 5.13e-01 120 chr3R:30425168-30425288 4.46e-02 30_[+5(2.88e-05)]_82 chr2L:12096385-12096505 1.43e-02 1_[+3(1.51e-05)]_111 chr3R:8313196-8313316 2.07e-02 120 chr2L:16356595-16356715 9.73e-01 120 chr3L:16348053-16348173 1.30e-01 20_[+5(6.18e-05)]_92 chrX:16593484-16593604 9.75e-01 120 chr3L:9487685-9487805 8.76e-02 50_[+3(2.13e-05)]_62 chrX:9159840-9159960 5.30e-03 110_[+5(1.47e-05)]_2 chr2L:16743400-16743520 2.78e-01 1_[+2(9.40e-05)]_111 chrX:1868772-1868892 1.21e-01 89_[+4(3.86e-05)]_23 chr2L:22247581-22247701 4.87e-01 120 chr2R:18442778-18442898 2.33e-02 44_[+5(1.47e-05)]_68 chr3L:1496579-1496699 4.12e-02 38_[+1(1.05e-05)]_74 chr3R:25033347-25033467 1.42e-02 104_[+1(1.05e-05)]_8 chr3L:21529240-21529360 9.03e-02 55_[+5(2.88e-05)]_57 chr3R:5592281-5592401 2.51e-01 120 chr3R:22365898-22366018 1.69e-01 102_[+5(5.07e-05)]_10 chr2R:21292144-21292264 9.66e-01 120 chr2R:13990376-13990496 5.73e-01 120 chr3L:21335202-21335322 4.82e-01 120 chr2R:14860737-14860857 1.30e-02 22_[+5(2.88e-05)]_90 chr2R:12162859-12162979 6.49e-01 120 chr3R:22491215-22491335 1.07e-02 49_[+1(8.60e-05)]_63 chr2L:13813792-13813912 1.60e-02 50_[+2(1.11e-05)]_62 chr2L:9963714-9963834 7.51e-02 38_[+1(1.05e-05)]_74 chr2L:19041821-19041941 2.21e-01 87_[+4(7.09e-05)]_25 chr2L:19123822-19123942 6.19e-02 120 chr3R:25983377-25983497 9.52e-03 104_[+1(3.09e-05)]_8 chr2R:14601154-14601274 1.53e-03 20_[+4(9.54e-05)]_92 chr2R:17535549-17535669 3.16e-03 111_[+1(7.06e-05)]_1 chr2R:21616819-21616939 2.14e-03 45_[+1(1.05e-05)]_67 chr3R:29592005-29592125 3.43e-02 120 chr2L:4967634-4967754 9.67e-01 120 chr2R:17737200-17737320 2.59e-02 120 chr2L:12038348-12038468 3.94e-01 120 chr3L:12146583-12146703 2.46e-03 90_[+3(2.13e-05)]_22 chrX:6694514-6694634 1.20e-02 7_[+4(4.83e-06)]_59_[+4(2.73e-05)]_\ 38 chr2L:19958735-19958855 4.78e-01 120 chr2R:24515102-24515222 1.03e-01 68_[+4(2.73e-05)]_44 chr2L:9790535-9790655 5.85e-01 120 chr3R:14575579-14575699 1.17e-01 120 chr3R:4906578-4906698 1.99e-01 120 chr2L:542466-542586 3.51e-03 19_[+3(4.48e-06)]_85_[+2(9.40e-05)] chr2R:10875731-10875851 4.84e-02 22_[+2(1.11e-05)]_90 chr3R:22462311-22462431 9.78e-01 120 chr2L:72043-72163 9.84e-01 120 chr3L:19924955-19925075 9.90e-01 120 chr3R:5374962-5375082 2.32e-01 120 chr3L:22871129-22871249 3.35e-02 45_[+3(1.51e-05)]_67 chrX:18137104-18137224 1.49e-03 55_[+2(1.11e-05)]_57 chr2R:16347413-16347533 4.91e-02 120 chr2R:22608222-22608342 4.29e-01 120 chrX:13830083-13830203 7.28e-05 34_[+3(4.48e-06)]_2_[+4(2.09e-05)]_\ 68 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************