******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Xbp1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:11890456-11890576 1.0000 120 chrX:11807133-11807253 1.0000 120 chrX:11805603-11805723 1.0000 120 chrX:11806384-11806504 1.0000 120 chr2L:16356661-16356781 1.0000 120 chr2L:8307917-8308037 1.0000 120 chr2L:453066-453186 1.0000 120 chr3R:5354495-5354615 1.0000 120 chrX:2275020-2275140 1.0000 120 chr2R:17766945-17767065 1.0000 120 chr2L:6424300-6424420 1.0000 120 chr3L:19096151-19096271 1.0000 120 chr3L:8535145-8535265 1.0000 120 chr3L:15140506-15140626 1.0000 120 chr3R:8349281-8349401 1.0000 120 chr2L:1974076-1974196 1.0000 120 chrX:8714382-8714502 1.0000 120 chr2L:8029378-8029498 1.0000 120 chr2L:10426834-10426954 1.0000 120 chr3L:15142103-15142223 1.0000 120 chr3R:16349544-16349664 1.0000 120 chr3L:4409577-4409697 1.0000 120 chrX:11694989-11695109 1.0000 120 chr2L:544582-544702 1.0000 120 chrX:11888295-11888415 1.0000 120 chr3R:31572090-31572210 1.0000 120 chr2L:2236794-2236914 1.0000 120 chrX:11807376-11807496 1.0000 120 chr3L:18822540-18822660 1.0000 120 chr3R:5354699-5354819 1.0000 120 chr3L:1546574-1546694 1.0000 120 chrX:3965029-3965149 1.0000 120 chr2L:17784792-17784912 1.0000 120 chr3R:25740487-25740607 1.0000 120 chr3L:10899349-10899469 1.0000 120 chr2L:12040659-12040779 1.0000 120 chr2R:15818622-15818742 1.0000 120 chr2R:20906666-20906786 1.0000 120 chr3R:5649222-5649342 1.0000 120 chr3L:8748978-8749098 1.0000 120 chr3L:22071808-22071928 1.0000 120 chr2L:6070930-6071050 1.0000 120 chrX:806039-806159 1.0000 120 chr2R:23567409-23567529 1.0000 120 chr3R:27948729-27948849 1.0000 120 chr3R:8349481-8349601 1.0000 120 chr2R:14618673-14618793 1.0000 120 chr2L:16816107-16816227 1.0000 120 chr2R:16551958-16552078 1.0000 120 chr3R:18242114-18242234 1.0000 120 chrX:2011691-2011811 1.0000 120 chr3L:13411165-13411285 1.0000 120 chrX:15594639-15594759 1.0000 120 chr3L:6264592-6264712 1.0000 120 chr2R:9400092-9400212 1.0000 120 chr2R:7139420-7139540 1.0000 120 chr2L:14701607-14701727 1.0000 120 chr2L:838114-838234 1.0000 120 chrX:15653662-15653782 1.0000 120 chr2L:5771304-5771424 1.0000 120 chr2L:7434835-7434955 1.0000 120 chrX:17820328-17820448 1.0000 120 chr2R:5128320-5128440 1.0000 120 chr2L:1491934-1492054 1.0000 120 chr2L:15248745-15248865 1.0000 120 chr3L:13929285-13929405 1.0000 120 chr2R:16800180-16800300 1.0000 120 chr2R:9990541-9990661 1.0000 120 chr3L:14190076-14190196 1.0000 120 chr3R:26235183-26235303 1.0000 120 chr3R:16857149-16857269 1.0000 120 chrX:7710915-7711035 1.0000 120 chr3R:24273179-24273299 1.0000 120 chr2R:21535535-21535655 1.0000 120 chr2L:1207590-1207710 1.0000 120 chrX:15486580-15486700 1.0000 120 chr2L:20734291-20734411 1.0000 120 chr2L:493366-493486 1.0000 120 chr3R:5636874-5636994 1.0000 120 chr2L:3472382-3472502 1.0000 120 chr2R:10160276-10160396 1.0000 120 chr2L:6098933-6099053 1.0000 120 chr2R:23551158-23551278 1.0000 120 chr3L:6817096-6817216 1.0000 120 chr3L:11993138-11993258 1.0000 120 chr2R:23385699-23385819 1.0000 120 chr3R:19875708-19875828 1.0000 120 chr2L:9576794-9576914 1.0000 120 chr3R:13078406-13078526 1.0000 120 chr3R:16919192-16919312 1.0000 120 chr2R:15381264-15381384 1.0000 120 chr2L:6797566-6797686 1.0000 120 chr3R:27937877-27937997 1.0000 120 chr2R:19310966-19311086 1.0000 120 chr3R:30056101-30056221 1.0000 120 chrX:6110035-6110155 1.0000 120 chrX:16105850-16105970 1.0000 120 chr2R:7566669-7566789 1.0000 120 chr3R:23921848-23921968 1.0000 120 chr3L:128370-128490 1.0000 120 chr3R:27948938-27949058 1.0000 120 chr3L:4413157-4413277 1.0000 120 chr3L:7510886-7511006 1.0000 120 chr3L:19896959-19897079 1.0000 120 chr3L:20771175-20771295 1.0000 120 chr2L:7258235-7258355 1.0000 120 chr3R:23387040-23387160 1.0000 120 chr2L:8528482-8528602 1.0000 120 chr2R:5122245-5122365 1.0000 120 chr2L:14160995-14161115 1.0000 120 chrX:18774884-18775004 1.0000 120 chr2L:18666044-18666164 1.0000 120 chr2R:25085532-25085652 1.0000 120 chr3R:6818713-6818833 1.0000 120 chr2L:20675992-20676112 1.0000 120 chrX:9352843-9352963 1.0000 120 chr3R:30812548-30812668 1.0000 120 chr3R:28676992-28677112 1.0000 120 chr2L:16743093-16743213 1.0000 120 chr3R:16704396-16704516 1.0000 120 chr3R:24625575-24625695 1.0000 120 chr3L:16544360-16544480 1.0000 120 chr3R:19113988-19114108 1.0000 120 chr2R:21128430-21128550 1.0000 120 chrX:7617086-7617206 1.0000 120 chr2R:21709639-21709759 1.0000 120 chr2R:7077030-7077150 1.0000 120 chr2L:20950823-20950943 1.0000 120 chrX:18635408-18635528 1.0000 120 chrX:3968817-3968937 1.0000 120 chr2R:14645106-14645226 1.0000 120 chr3R:16748670-16748790 1.0000 120 chr2R:9087684-9087804 1.0000 120 chr3L:11074589-11074709 1.0000 120 chr4:406959-407079 1.0000 120 chr2R:23652360-23652480 1.0000 120 chr2L:1428506-1428626 1.0000 120 chr3R:10648900-10649020 1.0000 120 chr2L:15751115-15751235 1.0000 120 chrX:16103583-16103703 1.0000 120 chr3R:22039559-22039679 1.0000 120 chr3L:630188-630308 1.0000 120 chrX:5883522-5883642 1.0000 120 chr2L:12721116-12721236 1.0000 120 chr2L:858239-858359 1.0000 120 chr2L:10856599-10856719 1.0000 120 chr2R:18829748-18829868 1.0000 120 chr3R:23293544-23293664 1.0000 120 chr2L:2037617-2037737 1.0000 120 chr3R:26436691-26436811 1.0000 120 chr2L:12002978-12003098 1.0000 120 chr3R:25004906-25005026 1.0000 120 chr3L:12336401-12336521 1.0000 120 chr3L:8751407-8751527 1.0000 120 chr3L:11303961-11304081 1.0000 120 chr2L:11091262-11091382 1.0000 120 chr3R:20948112-20948232 1.0000 120 chr3R:12350621-12350741 1.0000 120 chr2R:11435230-11435350 1.0000 120 chr2R:18514011-18514131 1.0000 120 chr3R:4775446-4775566 1.0000 120 chrX:20507866-20507986 1.0000 120 chr3R:8744368-8744488 1.0000 120 chrX:1478409-1478529 1.0000 120 chr3L:16779701-16779821 1.0000 120 chr2L:10356628-10356748 1.0000 120 chr3L:17802263-17802383 1.0000 120 chr2L:11331754-11331874 1.0000 120 chr3R:8563983-8564103 1.0000 120 chr3L:11334108-11334228 1.0000 120 chrX:17751840-17751960 1.0000 120 chr3R:23174872-23174992 1.0000 120 chr3R:14609390-14609510 1.0000 120 chrX:11451146-11451266 1.0000 120 chr2L:5520114-5520234 1.0000 120 chr3R:19024003-19024123 1.0000 120 chrX:7728371-7728491 1.0000 120 chr3L:16955308-16955428 1.0000 120 chr2L:20097231-20097351 1.0000 120 chr2L:21658610-21658730 1.0000 120 chr2L:827666-827786 1.0000 120 chr3L:15563037-15563157 1.0000 120 chr3L:1295787-1295907 1.0000 120 chr2L:5043891-5044011 1.0000 120 chrX:15384050-15384170 1.0000 120 chrX:2536271-2536391 1.0000 120 chr3R:24829991-24830111 1.0000 120 chr3R:16431763-16431883 1.0000 120 chr3R:29997786-29997906 1.0000 120 chrX:16288529-16288649 1.0000 120 chr2L:19577283-19577403 1.0000 120 chr2L:3444911-3445031 1.0000 120 chr2L:15061462-15061582 1.0000 120 chr3L:18784694-18784814 1.0000 120 chrX:3431757-3431877 1.0000 120 chr3L:6743153-6743273 1.0000 120 chr3R:27677196-27677316 1.0000 120 chr3L:21196726-21196846 1.0000 120 chr2R:16571748-16571868 1.0000 120 chr3R:4387585-4387705 1.0000 120 chr2L:4847290-4847410 1.0000 120 chr3L:6189686-6189806 1.0000 120 chr3L:10745741-10745861 1.0000 120 chr2L:1150676-1150796 1.0000 120 chr2L:21143034-21143154 1.0000 120 chr3R:9791307-9791427 1.0000 120 chr3R:9370597-9370717 1.0000 120 chr3R:20588516-20588636 1.0000 120 chr2R:8914043-8914163 1.0000 120 chrX:9356449-9356569 1.0000 120 chr2L:4441005-4441125 1.0000 120 chr2L:14094784-14094904 1.0000 120 chr2L:602459-602579 1.0000 120 chr3L:7360441-7360561 1.0000 120 chr2L:16709738-16709858 1.0000 120 chrX:16782219-16782339 1.0000 120 chrX:2149662-2149782 1.0000 120 chr3L:4607796-4607916 1.0000 120 chr2R:12337712-12337832 1.0000 120 chr3R:23028664-23028784 1.0000 120 chr3L:1647442-1647562 1.0000 120 chr3L:11403678-11403798 1.0000 120 chr3R:11674113-11674233 1.0000 120 chr3R:8960452-8960572 1.0000 120 chrX:11852495-11852615 1.0000 120 chr2L:9503147-9503267 1.0000 120 chr2L:5326957-5327077 1.0000 120 chr3L:12277521-12277641 1.0000 120 chr2L:10468578-10468698 1.0000 120 chr2R:13198322-13198442 1.0000 120 chrX:13784615-13784735 1.0000 120 chr2L:21163520-21163640 1.0000 120 chr2R:11359175-11359295 1.0000 120 chr3R:16469685-16469805 1.0000 120 chr3L:13006588-13006708 1.0000 120 chr2L:9224620-9224740 1.0000 120 chrX:11570418-11570538 1.0000 120 chrX:12242513-12242633 1.0000 120 chr2L:13073891-13074011 1.0000 120 chr2R:15201391-15201511 1.0000 120 chrX:9349357-9349477 1.0000 120 chr2L:20945429-20945549 1.0000 120 chr3L:12504137-12504257 1.0000 120 chr3R:30195725-30195845 1.0000 120 chr3R:8207076-8207196 1.0000 120 chr2R:23940207-23940327 1.0000 120 chr2R:14434325-14434445 1.0000 120 chr3R:21151487-21151607 1.0000 120 chr3L:18786908-18787028 1.0000 120 chr3R:21102031-21102151 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Xbp1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Xbp1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.308 C 0.196 G 0.191 T 0.305 Background letter frequencies (from file dataset with add-one prior applied): A 0.308 C 0.196 G 0.191 T 0.305 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GRTGGCGC MEME-1 width = 8 sites = 40 llr = 377 E-value = 2.2e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 24:::::: pos.-specific C :2:::a1a probability G 95199:a1 matrix T ::911::: bits 2.4 2.1 *** 1.9 **** 1.7 * ***** Relative 1.4 * ***** Entropy 1.2 * ****** (13.6 bits) 1.0 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTGGCGC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14434325-14434445 90 2.98e-06 AATTACTGTA GGTGGCGC CTAACATTCA chr2L:602459-602579 8 2.98e-06 GTAACAT GGTGGCGC CATCTGTTGT chrX:18635408-18635528 87 2.98e-06 TTCTCTCCTA GGTGGCGC TTTATTACTA chrX:6110035-6110155 67 2.98e-06 GCGGACGCCA GGTGGCGC CACACATGTA chr2L:9576794-9576914 82 2.98e-06 TTTTTAACTA GGTGGCGC AGGAGATCAT chr2R:21535535-21535655 68 2.98e-06 ATTTACGCTA GGTGGCGC TTGGCAGGAC chr2R:16800180-16800300 111 2.98e-06 ATTTCGTATA GGTGGCGC CA chr2L:1491934-1492054 102 2.98e-06 CTTCCGCCTA GGTGGCGC TTCTATCAGC chr3L:8748978-8749098 47 2.98e-06 CTCACACATA GGTGGCGC ATTCTGCACA chr2L:17784792-17784912 8 2.98e-06 ACACATA GGTGGCGC TGAAGCCAAT chr3R:16748670-16748790 62 7.78e-06 CGAATCCATA GATGGCGC ATGCAACTCA chr2L:16743093-16743213 57 7.78e-06 CTAGCCAGCA GATGGCGC TGGTGAAGTA chr2L:14160995-14161115 44 7.78e-06 CTCACACAGA GATGGCGC CAACACTTAA chr2L:3472382-3472502 82 7.78e-06 TGCCTGTGCA GATGGCGC CACCATGACG chrX:7710915-7711035 52 7.78e-06 TTAAGTCATA GATGGCGC TCGCTGTAAC chr2R:20906666-20906786 88 7.78e-06 ACCAACGGTA GATGGCGC CAGTGCAACA chr2R:23652360-23652480 23 1.08e-05 AATTCAGAGT GCTGGCGC CATCCAGCTT chrX:15594639-15594759 50 1.08e-05 TACCCGCCTA GCTGGCGC TTTTGTGCTA chr3L:16955308-16955428 53 1.75e-05 GATCTTCCAC AGTGGCGC CATCTGCAGT chr3R:19875708-19875828 21 1.75e-05 CCAGATGTAC AGTGGCGC GCAAAAGTAT chr3L:10899349-10899469 29 1.75e-05 CCTTTGTTGT AGTGGCGC CCTCTTTTGT chr2L:5043891-5044011 12 2.05e-05 GTGCGAGCGA GAGGGCGC ATGGCTCAGG chrX:17751840-17751960 87 2.05e-05 TTCAAGAGTA GAGGGCGC CGCTTACTTT chr4:406959-407079 76 2.05e-05 ATTTCCCACA GAGGGCGC CTGTAGTGGT chr2L:6797566-6797686 95 2.53e-05 TACGCCGCTA GGTGTCGC TTAGTTAAAA chr2R:9990541-9990661 17 2.53e-05 ACAACTCTGT GGTGTCGC TATCGCAGGT chrX:15653662-15653782 93 2.53e-05 AACAGCCACA GGTGTCGC TACTGAGCAA chrX:17820328-17820448 37 5.06e-05 AATCGTGTGC ACTGGCGC CACCTAGGTA chr3L:6264592-6264712 9 5.06e-05 CAAGATTT ACTGGCGC CATCTAGGGC chr3L:4409577-4409697 67 5.06e-05 TTCATTTTCC ACTGGCGC TGATTTGCAG chr3R:16919192-16919312 84 5.82e-05 ACCAACACAA GATGTCGC TCTCCGACAG chr3R:19024003-19024123 24 7.37e-05 ACGAACAGCT GGTGGGGC AGAGTTGCCA chr2L:16816107-16816227 25 7.37e-05 GAGATCAGTC GATTGCGC CACCTTGTGC chr2L:8307917-8308037 76 7.37e-05 CTTCGATTTT GATTGCGC GGCTGCGTAA chr2R:23940207-23940327 109 8.33e-05 GAATCCCCCT GATGGCCC CTTA chrX:5883522-5883642 62 8.33e-05 AAGTCCGCCA GATGGCGG CACAGCATGA chr3L:22071808-22071928 95 9.43e-05 AAGCAGCAGT GCTGGCGG CCAGCTTTTT chr3R:16349544-16349664 26 9.43e-05 CCCAAACGTC GCTGGCCC TGAAAGAGGA chr2L:1150676-1150796 25 1.02e-04 TTTGCAGTAG GGTAGCGC AATAAACTTA chr2L:8029378-8029498 18 1.16e-04 GTTAATTGTT GGGTGCGC AAATGAGTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14434325-14434445 3e-06 89_[+1]_23 chr2L:602459-602579 3e-06 7_[+1]_105 chrX:18635408-18635528 3e-06 86_[+1]_26 chrX:6110035-6110155 3e-06 66_[+1]_46 chr2L:9576794-9576914 3e-06 81_[+1]_31 chr2R:21535535-21535655 3e-06 67_[+1]_45 chr2R:16800180-16800300 3e-06 110_[+1]_2 chr2L:1491934-1492054 3e-06 101_[+1]_11 chr3L:8748978-8749098 3e-06 46_[+1]_66 chr2L:17784792-17784912 3e-06 7_[+1]_105 chr3R:16748670-16748790 7.8e-06 61_[+1]_51 chr2L:16743093-16743213 7.8e-06 56_[+1]_56 chr2L:14160995-14161115 7.8e-06 43_[+1]_69 chr2L:3472382-3472502 7.8e-06 81_[+1]_31 chrX:7710915-7711035 7.8e-06 51_[+1]_61 chr2R:20906666-20906786 7.8e-06 87_[+1]_25 chr2R:23652360-23652480 1.1e-05 22_[+1]_90 chrX:15594639-15594759 1.1e-05 49_[+1]_63 chr3L:16955308-16955428 1.8e-05 52_[+1]_60 chr3R:19875708-19875828 1.8e-05 20_[+1]_92 chr3L:10899349-10899469 1.8e-05 28_[+1]_84 chr2L:5043891-5044011 2.1e-05 11_[+1]_101 chrX:17751840-17751960 2.1e-05 86_[+1]_26 chr4:406959-407079 2.1e-05 75_[+1]_37 chr2L:6797566-6797686 2.5e-05 94_[+1]_18 chr2R:9990541-9990661 2.5e-05 16_[+1]_96 chrX:15653662-15653782 2.5e-05 92_[+1]_20 chrX:17820328-17820448 5.1e-05 36_[+1]_76 chr3L:6264592-6264712 5.1e-05 8_[+1]_104 chr3L:4409577-4409697 5.1e-05 66_[+1]_46 chr3R:16919192-16919312 5.8e-05 83_[+1]_29 chr3R:19024003-19024123 7.4e-05 23_[+1]_89 chr2L:16816107-16816227 7.4e-05 24_[+1]_88 chr2L:8307917-8308037 7.4e-05 75_[+1]_37 chr2R:23940207-23940327 8.3e-05 108_[+1]_4 chrX:5883522-5883642 8.3e-05 61_[+1]_51 chr3L:22071808-22071928 9.4e-05 94_[+1]_18 chr3R:16349544-16349664 9.4e-05 25_[+1]_87 chr2L:1150676-1150796 0.0001 24_[+1]_88 chr2L:8029378-8029498 0.00012 17_[+1]_95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRTGGCGC width=8 seqs=40 chr2R:14434325-14434445 ( 90) GGTGGCGC 1 chr2L:602459-602579 ( 8) GGTGGCGC 1 chrX:18635408-18635528 ( 87) GGTGGCGC 1 chrX:6110035-6110155 ( 67) GGTGGCGC 1 chr2L:9576794-9576914 ( 82) GGTGGCGC 1 chr2R:21535535-21535655 ( 68) GGTGGCGC 1 chr2R:16800180-16800300 ( 111) GGTGGCGC 1 chr2L:1491934-1492054 ( 102) GGTGGCGC 1 chr3L:8748978-8749098 ( 47) GGTGGCGC 1 chr2L:17784792-17784912 ( 8) GGTGGCGC 1 chr3R:16748670-16748790 ( 62) GATGGCGC 1 chr2L:16743093-16743213 ( 57) GATGGCGC 1 chr2L:14160995-14161115 ( 44) GATGGCGC 1 chr2L:3472382-3472502 ( 82) GATGGCGC 1 chrX:7710915-7711035 ( 52) GATGGCGC 1 chr2R:20906666-20906786 ( 88) GATGGCGC 1 chr2R:23652360-23652480 ( 23) GCTGGCGC 1 chrX:15594639-15594759 ( 50) GCTGGCGC 1 chr3L:16955308-16955428 ( 53) AGTGGCGC 1 chr3R:19875708-19875828 ( 21) AGTGGCGC 1 chr3L:10899349-10899469 ( 29) AGTGGCGC 1 chr2L:5043891-5044011 ( 12) GAGGGCGC 1 chrX:17751840-17751960 ( 87) GAGGGCGC 1 chr4:406959-407079 ( 76) GAGGGCGC 1 chr2L:6797566-6797686 ( 95) GGTGTCGC 1 chr2R:9990541-9990661 ( 17) GGTGTCGC 1 chrX:15653662-15653782 ( 93) GGTGTCGC 1 chrX:17820328-17820448 ( 37) ACTGGCGC 1 chr3L:6264592-6264712 ( 9) ACTGGCGC 1 chr3L:4409577-4409697 ( 67) ACTGGCGC 1 chr3R:16919192-16919312 ( 84) GATGTCGC 1 chr3R:19024003-19024123 ( 24) GGTGGGGC 1 chr2L:16816107-16816227 ( 25) GATTGCGC 1 chr2L:8307917-8308037 ( 76) GATTGCGC 1 chr2R:23940207-23940327 ( 109) GATGGCCC 1 chrX:5883522-5883642 ( 62) GATGGCGG 1 chr3L:22071808-22071928 ( 95) GCTGGCGG 1 chr3R:16349544-16349664 ( 26) GCTGGCCC 1 chr2L:1150676-1150796 ( 25) GGTAGCGC 1 chr2L:8029378-8029498 ( 18) GGGTGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9372 E= 2.2e-020 -104 -1197 215 -1197 18 -16 131 -1197 -1197 -1197 -94 156 -362 -1197 223 -202 -1197 -1197 223 -161 -1197 232 -293 -1197 -1197 -197 231 -1197 -1197 228 -194 -1197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 2.2e-020 0.150000 0.000000 0.850000 0.000000 0.350000 0.175000 0.475000 0.000000 0.000000 0.000000 0.100000 0.900000 0.025000 0.000000 0.900000 0.075000 0.000000 0.000000 0.900000 0.100000 0.000000 0.975000 0.025000 0.000000 0.000000 0.050000 0.950000 0.000000 0.000000 0.950000 0.050000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-1 regular expression -------------------------------------------------------------------------------- G[GA]TGGCGC -------------------------------------------------------------------------------- Time 7.45 secs. ******************************************************************************** ******************************************************************************** MOTIF STGACGTG MEME-2 width = 8 sites = 24 llr = 245 E-value = 8.8e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif STGACGTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1::a:::: pos.-specific C 4:::a::: probability G 5:a::a:a matrix T 1a::::a: bits 2.4 * * 2.1 * ** * 1.9 * ** * 1.7 ******* Relative 1.4 ******* Entropy 1.2 ******* (14.7 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGACGTG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGACGTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6098933-6099053 107 7.47e-06 TGCCAGACTG GTGACGTG AGCAAA chrX:15486580-15486700 30 7.47e-06 AATTTATGAA GTGACGTG GCTCTCTCTT chr2R:14618673-14618793 99 7.47e-06 CACCACCAAA GTGACGTG GAACGAAAAA chr3R:27948729-27948849 69 7.47e-06 TCTGTTATTC GTGACGTG GCCTTTCGCC chrX:806039-806159 61 7.47e-06 GGACATACCG GTGACGTG GTTACATTGC chr3R:5649222-5649342 70 7.47e-06 CTGTCAATCC GTGACGTG GCCTGACCGA chr3R:31572090-31572210 78 7.47e-06 GCACCGCTGA GTGACGTG TAAGCGCAGC chr3R:8349281-8349401 34 7.47e-06 TTGTGTCTAC GTGACGTG TATCATTTAG chr2L:8307917-8308037 45 7.47e-06 CCACCGAAAA GTGACGTG GCCACAAACA chrX:11852495-11852615 33 1.51e-05 GTCTGGGGTT CTGACGTG TCAACACTCT chrX:3965029-3965149 46 1.51e-05 ATTCGTGGCA CTGACGTG TGCACCTCTC chrX:11807376-11807496 80 1.51e-05 ATCTCTAGCA CTGACGTG TCGCAGGCGT chr3L:4409577-4409697 49 1.51e-05 TTTGGGGTTG CTGACGTG TTCATTTTCC chr3L:15140506-15140626 46 1.51e-05 ATAGCTGCGG CTGACGTG GCCCTGGCAT chr3L:19096151-19096271 31 1.51e-05 AATAATAAAC CTGACGTG GAAATGCCGC chrX:11805603-11805723 45 1.51e-05 CTATGCCACA CTGACGTG TACTTTGCGA chrX:11807133-11807253 34 1.51e-05 TCACCTACCA CTGACGTG TCGATGAGTT chr2R:11890456-11890576 48 1.51e-05 AAGGCAAACG CTGACGTG TACTTTGCGC chr2L:12721116-12721236 56 3.91e-05 TTTCTGTCCT ATGACGTG TTCCATTCGC chr3L:16544360-16544480 4 3.91e-05 GGA ATGACGTG AAACTCTGAA chr3L:6264592-6264712 98 3.91e-05 TAGAATACAT TTGACGTG TAGAAGACAA chrX:2275020-2275140 48 3.91e-05 gaggaaAACG TTGACGTG TTGATTCGAC chr3L:13006588-13006708 86 5.45e-05 AGTGTGGTGT GTGACCTG GCTAAATGAG chrX:2149662-2149782 41 5.45e-05 TCACTGTGGT GTCACGTG CGTGAGTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGACGTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6098933-6099053 7.5e-06 106_[+2]_6 chrX:15486580-15486700 7.5e-06 29_[+2]_83 chr2R:14618673-14618793 7.5e-06 98_[+2]_14 chr3R:27948729-27948849 7.5e-06 68_[+2]_44 chrX:806039-806159 7.5e-06 60_[+2]_52 chr3R:5649222-5649342 7.5e-06 69_[+2]_43 chr3R:31572090-31572210 7.5e-06 77_[+2]_35 chr3R:8349281-8349401 7.5e-06 33_[+2]_79 chr2L:8307917-8308037 7.5e-06 44_[+2]_68 chrX:11852495-11852615 1.5e-05 32_[+2]_80 chrX:3965029-3965149 1.5e-05 45_[+2]_67 chrX:11807376-11807496 1.5e-05 79_[+2]_33 chr3L:4409577-4409697 1.5e-05 48_[+2]_64 chr3L:15140506-15140626 1.5e-05 45_[+2]_67 chr3L:19096151-19096271 1.5e-05 30_[+2]_82 chrX:11805603-11805723 1.5e-05 44_[+2]_68 chrX:11807133-11807253 1.5e-05 33_[+2]_79 chr2R:11890456-11890576 1.5e-05 47_[+2]_65 chr2L:12721116-12721236 3.9e-05 55_[+2]_57 chr3L:16544360-16544480 3.9e-05 3_[+2]_109 chr3L:6264592-6264712 3.9e-05 97_[+2]_15 chrX:2275020-2275140 3.9e-05 47_[+2]_65 chr3L:13006588-13006708 5.4e-05 85_[+2]_27 chrX:2149662-2149782 5.4e-05 40_[+2]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGACGTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STGACGTG width=8 seqs=24 chr2L:6098933-6099053 ( 107) GTGACGTG 1 chrX:15486580-15486700 ( 30) GTGACGTG 1 chr2R:14618673-14618793 ( 99) GTGACGTG 1 chr3R:27948729-27948849 ( 69) GTGACGTG 1 chrX:806039-806159 ( 61) GTGACGTG 1 chr3R:5649222-5649342 ( 70) GTGACGTG 1 chr3R:31572090-31572210 ( 78) GTGACGTG 1 chr3R:8349281-8349401 ( 34) GTGACGTG 1 chr2L:8307917-8308037 ( 45) GTGACGTG 1 chrX:11852495-11852615 ( 33) CTGACGTG 1 chrX:3965029-3965149 ( 46) CTGACGTG 1 chrX:11807376-11807496 ( 80) CTGACGTG 1 chr3L:4409577-4409697 ( 49) CTGACGTG 1 chr3L:15140506-15140626 ( 46) CTGACGTG 1 chr3L:19096151-19096271 ( 31) CTGACGTG 1 chrX:11805603-11805723 ( 45) CTGACGTG 1 chrX:11807133-11807253 ( 34) CTGACGTG 1 chr2R:11890456-11890576 ( 48) CTGACGTG 1 chr2L:12721116-12721236 ( 56) ATGACGTG 1 chr3L:16544360-16544480 ( 4) ATGACGTG 1 chr3L:6264592-6264712 ( 98) TTGACGTG 1 chrX:2275020-2275140 ( 48) TTGACGTG 1 chr3L:13006588-13006708 ( 86) GTGACCTG 1 chrX:2149662-2149782 ( 41) GTCACGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGACGTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.85841 E= 8.8e-011 -188 94 126 -187 -1123 -1123 -1123 171 -1123 -223 232 -1123 170 -1123 -1123 -1123 -1123 235 -1123 -1123 -1123 -223 232 -1123 -1123 -1123 -1123 171 -1123 -1123 239 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGACGTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 8.8e-011 0.083333 0.375000 0.458333 0.083333 0.000000 0.000000 0.000000 1.000000 0.000000 0.041667 0.958333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.041667 0.958333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGACGTG MEME-2 regular expression -------------------------------------------------------------------------------- [GC]TGACGTG -------------------------------------------------------------------------------- Time 13.66 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCCAYC MEME-3 width = 8 sites = 24 llr = 242 E-value = 1.8e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::2:9:: pos.-specific C :9:8a15a probability G a:a::::: matrix T :1::::5: bits 2.4 * * 2.1 * * * * 1.9 * * * * 1.7 *** * * Relative 1.4 ****** * Entropy 1.2 ****** * (14.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCCATC consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:12350621-12350741 26 3.25e-06 TGGAATAAGC GCGCCACC TACTGGCCGC chr3R:20948112-20948232 70 3.25e-06 TGCTTATACA GCGCCACC TATGTTTGGA chr2R:23652360-23652480 66 3.25e-06 AATAGGAACA GCGCCACC TGCTTGCGAA chr2L:6797566-6797686 8 3.25e-06 CTTTTTA GCGCCACC TGGCTGAATA chr3R:16919192-16919312 33 3.25e-06 CCGCCTTGCA GCGCCACC TGGCCTTGGT chr2R:16800180-16800300 40 3.25e-06 AACTGAACTA GCGCCACC TGAGACTGCA chr2R:16551958-16552078 47 3.25e-06 ATACAAAAGA GCGCCACC TAGAAAATAT chr2R:15818622-15818742 72 3.25e-06 CACAAATGCA GCGCCACC TATGCGGGCA chr3R:16431763-16431883 43 8.31e-06 ATTCTCACAG GCGCCATC TTACGTATTT chr2R:25085532-25085652 41 8.31e-06 AAAGTTGAGT GCGCCATC TTTTGCTTGA chr2L:7258235-7258355 78 8.31e-06 AGCGCCCAGT GCGCCATC TAGCAGAACT chrX:16105850-16105970 14 8.31e-06 AATATGTGAA GCGCCATC CAGCGGATAG chrX:15653662-15653782 36 1.34e-05 AACGGCAAGA GCGACACC TATCGTCAGT chr2R:14434325-14434445 30 2.34e-05 TGTCACACCA GCGACATC TATGGAGTCA chr3R:13078406-13078526 84 2.34e-05 taAAAGTGGT GCGACATC TAGTGGTTTT chr3L:13411165-13411285 39 2.34e-05 AACGTTTGCA GCGACATC TAGTGGTGGT chr2R:20906666-20906786 17 2.34e-05 ACACATTGCA GCGACATC TATCGTCAAA chr3R:16857149-16857269 53 2.66e-05 AAACAACACA GCGCCCTC TTTTGCGCTA chr2L:5771304-5771424 41 2.66e-05 TTCTACAGCA GCGCCCTC TCACAGATTT chr2R:14618673-14618793 85 3.17e-05 ATCGGCAGCG GTGCCACC ACCAAAGTGA chrX:11694989-11695109 32 3.96e-05 TTAGCTAACT GTGCCATC CCTGGTCGGG chr2L:1974076-1974196 45 3.96e-05 CCGGAGTCAA GTGCCATC ACCAAAAAGA chr2L:17784792-17784912 85 4.61e-05 TATACAGATG GCGCCACG AATTTGATGA chr3R:16748670-16748790 83 5.62e-05 CAACTCAGTG CCGCCATC TGACGTAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:12350621-12350741 3.3e-06 25_[+3]_87 chr3R:20948112-20948232 3.3e-06 69_[+3]_43 chr2R:23652360-23652480 3.3e-06 65_[+3]_47 chr2L:6797566-6797686 3.3e-06 7_[+3]_105 chr3R:16919192-16919312 3.3e-06 32_[+3]_80 chr2R:16800180-16800300 3.3e-06 39_[+3]_73 chr2R:16551958-16552078 3.3e-06 46_[+3]_66 chr2R:15818622-15818742 3.3e-06 71_[+3]_41 chr3R:16431763-16431883 8.3e-06 42_[+3]_70 chr2R:25085532-25085652 8.3e-06 40_[+3]_72 chr2L:7258235-7258355 8.3e-06 77_[+3]_35 chrX:16105850-16105970 8.3e-06 13_[+3]_99 chrX:15653662-15653782 1.3e-05 35_[+3]_77 chr2R:14434325-14434445 2.3e-05 29_[+3]_83 chr3R:13078406-13078526 2.3e-05 83_[+3]_29 chr3L:13411165-13411285 2.3e-05 38_[+3]_74 chr2R:20906666-20906786 2.3e-05 16_[+3]_96 chr3R:16857149-16857269 2.7e-05 52_[+3]_60 chr2L:5771304-5771424 2.7e-05 40_[+3]_72 chr2R:14618673-14618793 3.2e-05 84_[+3]_28 chrX:11694989-11695109 4e-05 31_[+3]_81 chr2L:1974076-1974196 4e-05 44_[+3]_68 chr2L:17784792-17784912 4.6e-05 84_[+3]_28 chr3R:16748670-16748790 5.6e-05 82_[+3]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCAYC width=8 seqs=24 chr3R:12350621-12350741 ( 26) GCGCCACC 1 chr3R:20948112-20948232 ( 70) GCGCCACC 1 chr2R:23652360-23652480 ( 66) GCGCCACC 1 chr2L:6797566-6797686 ( 8) GCGCCACC 1 chr3R:16919192-16919312 ( 33) GCGCCACC 1 chr2R:16800180-16800300 ( 40) GCGCCACC 1 chr2R:16551958-16552078 ( 47) GCGCCACC 1 chr2R:15818622-15818742 ( 72) GCGCCACC 1 chr3R:16431763-16431883 ( 43) GCGCCATC 1 chr2R:25085532-25085652 ( 41) GCGCCATC 1 chr2L:7258235-7258355 ( 78) GCGCCATC 1 chrX:16105850-16105970 ( 14) GCGCCATC 1 chrX:15653662-15653782 ( 36) GCGACACC 1 chr2R:14434325-14434445 ( 30) GCGACATC 1 chr3R:13078406-13078526 ( 84) GCGACATC 1 chr3L:13411165-13411285 ( 39) GCGACATC 1 chr2R:20906666-20906786 ( 17) GCGACATC 1 chr3R:16857149-16857269 ( 53) GCGCCCTC 1 chr2L:5771304-5771424 ( 41) GCGCCCTC 1 chr2R:14618673-14618793 ( 85) GTGCCACC 1 chrX:11694989-11695109 ( 32) GTGCCATC 1 chr2L:1974076-1974196 ( 45) GTGCCATC 1 chr2L:17784792-17784912 ( 85) GCGCCACG 1 chr3R:16748670-16748790 ( 83) CCGCCATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 1.8e-008 -1123 -223 232 -1123 -1123 216 -1123 -129 -1123 -1123 239 -1123 -56 202 -1123 -1123 -1123 235 -1123 -1123 157 -123 -1123 -1123 -1123 123 -1123 83 -1123 229 -220 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.8e-008 0.000000 0.041667 0.958333 0.000000 0.000000 0.875000 0.000000 0.125000 0.000000 0.000000 1.000000 0.000000 0.208333 0.791667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.000000 0.458333 0.000000 0.541667 0.000000 0.958333 0.041667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-3 regular expression -------------------------------------------------------------------------------- GCG[CA]CA[TC]C -------------------------------------------------------------------------------- Time 19.85 secs. ******************************************************************************** ******************************************************************************** MOTIF MCACGTCA MEME-4 width = 8 sites = 18 llr = 189 E-value = 8.3e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCACGTCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 5:a::::a pos.-specific C 5a:a:1a: probability G ::::a::: matrix T :::::9:: bits 2.4 * ** * 2.1 * ** * 1.9 * ** * 1.7 **** ** Relative 1.4 **** ** Entropy 1.2 ******* (15.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACACGTCA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACGTCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:19896959-19897079 31 8.16e-06 TGCCCCCACA CCACGTCA CACGTAGTAG chr3L:128370-128490 29 8.16e-06 GCGTCGGCAT CCACGTCA GCAAAGCCAA chr2R:9990541-9990661 55 8.16e-06 CTCCCAAAGG CCACGTCA TCGCATGGCT chr3L:1546574-1546694 56 8.16e-06 TTGGCCGTCG CCACGTCA TGCTTGTCGT chr2L:2236794-2236914 12 8.16e-06 AAACGAACTT CCACGTCA GTTCCCTAAT chrX:11888295-11888415 90 8.16e-06 TCTCTAAACA CCACGTCA ATTTTTTTTT chr2L:10426834-10426954 70 8.16e-06 TATTCATCAG CCACGTCA TTGTTTATGC chr3L:8535145-8535265 67 8.16e-06 AGACGCAGCT CCACGTCA GTTGTTTTGG chr2R:7566669-7566789 42 2.10e-05 GCACGGTCAA ACACGTCA CCTAACAGTT chr3R:24273179-24273299 45 2.10e-05 GGAGCAAAGT ACACGTCA CAACGGAGCA chr2R:9400092-9400212 24 2.10e-05 TGGGCGAGTG ACACGTCA TGGGTGCGGT chr2L:544582-544702 37 2.10e-05 ACGCAGCAGC ACACGTCA ACAATCTGTG chrX:8714382-8714502 39 2.10e-05 TTTGTTTGGT ACACGTCA GCCGCGTCTA chr2R:17766945-17767065 36 2.10e-05 GATATTTTAT ACACGTCA GCGGCCGAGA chr2L:16356661-16356781 42 2.10e-05 AAAAAAGAGT ACACGTCA CTGCGAGTGC chrX:11806384-11806504 53 2.10e-05 GGCCAAAAAG ACACGTCA GTGGTAGATC chr3L:12504137-12504257 104 2.62e-05 GACCGTTCGA CCACGCCA AGAGAGCGT chr3L:6743153-6743273 29 3.44e-05 AAATTCGTCA ACACGCCA GCCATCGATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACGTCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:19896959-19897079 8.2e-06 30_[+4]_82 chr3L:128370-128490 8.2e-06 28_[+4]_84 chr2R:9990541-9990661 8.2e-06 54_[+4]_58 chr3L:1546574-1546694 8.2e-06 55_[+4]_57 chr2L:2236794-2236914 8.2e-06 11_[+4]_101 chrX:11888295-11888415 8.2e-06 89_[+4]_23 chr2L:10426834-10426954 8.2e-06 69_[+4]_43 chr3L:8535145-8535265 8.2e-06 66_[+4]_46 chr2R:7566669-7566789 2.1e-05 41_[+4]_71 chr3R:24273179-24273299 2.1e-05 44_[+4]_68 chr2R:9400092-9400212 2.1e-05 23_[+4]_89 chr2L:544582-544702 2.1e-05 36_[+4]_76 chrX:8714382-8714502 2.1e-05 38_[+4]_74 chr2R:17766945-17767065 2.1e-05 35_[+4]_77 chr2L:16356661-16356781 2.1e-05 41_[+4]_71 chrX:11806384-11806504 2.1e-05 52_[+4]_60 chr3L:12504137-12504257 2.6e-05 103_[+4]_9 chr3L:6743153-6743273 3.4e-05 28_[+4]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACGTCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCACGTCA width=8 seqs=18 chr3L:19896959-19897079 ( 31) CCACGTCA 1 chr3L:128370-128490 ( 29) CCACGTCA 1 chr2R:9990541-9990661 ( 55) CCACGTCA 1 chr3L:1546574-1546694 ( 56) CCACGTCA 1 chr2L:2236794-2236914 ( 12) CCACGTCA 1 chrX:11888295-11888415 ( 90) CCACGTCA 1 chr2L:10426834-10426954 ( 70) CCACGTCA 1 chr3L:8535145-8535265 ( 67) CCACGTCA 1 chr2R:7566669-7566789 ( 42) ACACGTCA 1 chr3R:24273179-24273299 ( 45) ACACGTCA 1 chr2R:9400092-9400212 ( 24) ACACGTCA 1 chr2L:544582-544702 ( 37) ACACGTCA 1 chrX:8714382-8714502 ( 39) ACACGTCA 1 chr2R:17766945-17767065 ( 36) ACACGTCA 1 chr2L:16356661-16356781 ( 42) ACACGTCA 1 chrX:11806384-11806504 ( 53) ACACGTCA 1 chr3L:12504137-12504257 ( 104) CCACGCCA 1 chr3L:6743153-6743273 ( 29) ACACGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACGTCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 8.3e-004 70 135 -1081 -1081 -1081 235 -1081 -1081 170 -1081 -1081 -1081 -1081 235 -1081 -1081 -1081 -1081 238 -1081 -1081 -82 -1081 154 -1081 235 -1081 -1081 170 -1081 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACGTCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 8.3e-004 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.000000 0.888889 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACGTCA MEME-4 regular expression -------------------------------------------------------------------------------- [AC]CACGTCA -------------------------------------------------------------------------------- Time 25.97 secs. ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-5 width = 8 sites = 31 llr = 279 E-value = 2.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 2a:::a:9 pos.-specific C 1::a1::: probability G ::::9::1 matrix T 7:a:::a: bits 2.4 * 2.1 * 1.9 ** 1.7 ****** Relative 1.4 ****** Entropy 1.2 ******* (13.0 bits) 1.0 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:12277521-12277641 93 3.10e-05 CGCCCGCACC TATCGATA CGTGCTCCCA chr3L:7360441-7360561 79 3.10e-05 GCCTCCCGCC TATCGATA GCCGTGCAAT chr3R:27677196-27677316 7 3.10e-05 ACGGCT TATCGATA AGTACCGGCT chr2L:20097231-20097351 19 3.10e-05 GATACATGAC TATCGATA CATTCAGGGG chrX:7728371-7728491 25 3.10e-05 TGTGCGGTGT TATCGATA GTGCACGTAT chr2R:18514011-18514131 19 3.10e-05 GATGACTGCC TATCGATA TAAAATTAAA chr3R:12350621-12350741 69 3.10e-05 AAGCGATAGG TATCGATA GCGAGGTCAG chr2R:21128430-21128550 65 3.10e-05 ATTGTTGTGT TATCGATA CGCCGATAGG chr3R:24625575-24625695 52 3.10e-05 AGCTAAATGT TATCGATA AGCATTTCAG chr2L:6098933-6099053 25 3.10e-05 CAGGGCGAGG TATCGATA CATCGATAGG chr2L:14701607-14701727 109 3.10e-05 ATAGTGTATA TATCGATA GGTA chr3L:18822540-18822660 25 3.10e-05 ATAATCGAAA TATCGATA TCTTCGGCCC chr3R:31572090-31572210 18 3.10e-05 ACATCGGAGC TATCGATA CTTAACTGGA chrX:11694989-11695109 91 3.10e-05 GATATAATGC TATCGATA TGACAGAGTG chr2L:10426834-10426954 23 3.10e-05 CACTTATCGA TATCGATA GGCAGTGGCC chr2R:17766945-17767065 58 3.10e-05 CCGAGACAAC TATCGATA TGTTTCTGGA chr2L:1150676-1150796 7 6.24e-05 CGAACC AATCGATA TTTGCAGTAG chr3R:29997786-29997906 113 6.24e-05 ACAACCGATG AATCGATA chr3L:15563037-15563157 51 6.24e-05 GTCGCATAGT AATCGATA AGTTTTAAAT chr2L:16743093-16743213 105 6.24e-05 TGAGGTACAT AATCGATA ATAATGGA chrX:11807376-11807496 44 6.24e-05 ATATAATTTT AATCGATA ACTATCTTAA chrX:2275020-2275140 77 6.24e-05 GGGCGATAGC AATCGATA AAACAATCGA chr3R:27937877-27937997 4 8.23e-05 ATC CATCGATA CGATCGCTGA chr3L:22071808-22071928 78 8.23e-05 GGTCACGCGT CATCGATA AGCAGCAGTG chrX:11807133-11807253 66 8.23e-05 TTTCTAGAAA CATCGATA CACATCTGGC chr2R:16571748-16571868 43 1.02e-04 TGTTCGATTT TATCGATG TTTCCAACCA chr2L:16356661-16356781 104 1.02e-04 ACTTTGTGAC TATCGATG TAGAAGCCG chr2L:20945429-20945549 1 1.33e-04 . TATCCATA TAACAACAAT chr3L:10745741-10745861 88 1.33e-04 TTTCAACACT TATCCATA TCTAGTCCAA chr3R:4775446-4775566 22 1.33e-04 AATAAAGCAT TATCCATA ATATTAGTTG chr2R:23551158-23551278 113 1.53e-04 TCTACAAATT AATCGATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:12277521-12277641 3.1e-05 92_[+5]_20 chr3L:7360441-7360561 3.1e-05 78_[+5]_34 chr3R:27677196-27677316 3.1e-05 6_[+5]_106 chr2L:20097231-20097351 3.1e-05 18_[+5]_94 chrX:7728371-7728491 3.1e-05 24_[+5]_88 chr2R:18514011-18514131 3.1e-05 18_[+5]_94 chr3R:12350621-12350741 3.1e-05 68_[+5]_44 chr2R:21128430-21128550 3.1e-05 64_[+5]_48 chr3R:24625575-24625695 3.1e-05 51_[+5]_61 chr2L:6098933-6099053 3.1e-05 24_[+5]_88 chr2L:14701607-14701727 3.1e-05 108_[+5]_4 chr3L:18822540-18822660 3.1e-05 24_[+5]_88 chr3R:31572090-31572210 3.1e-05 17_[+5]_95 chrX:11694989-11695109 3.1e-05 90_[+5]_22 chr2L:10426834-10426954 3.1e-05 22_[+5]_90 chr2R:17766945-17767065 3.1e-05 57_[+5]_55 chr2L:1150676-1150796 6.2e-05 6_[+5]_106 chr3R:29997786-29997906 6.2e-05 112_[+5] chr3L:15563037-15563157 6.2e-05 50_[+5]_62 chr2L:16743093-16743213 6.2e-05 104_[+5]_8 chrX:11807376-11807496 6.2e-05 43_[+5]_69 chrX:2275020-2275140 6.2e-05 76_[+5]_36 chr3R:27937877-27937997 8.2e-05 3_[+5]_109 chr3L:22071808-22071928 8.2e-05 77_[+5]_35 chrX:11807133-11807253 8.2e-05 65_[+5]_47 chr2R:16571748-16571868 0.0001 42_[+5]_70 chr2L:16356661-16356781 0.0001 103_[+5]_9 chr2L:20945429-20945549 0.00013 [+5]_112 chr3L:10745741-10745861 0.00013 87_[+5]_25 chr3R:4775446-4775566 0.00013 21_[+5]_91 chr2R:23551158-23551278 0.00015 112_[+5] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=31 chr3L:12277521-12277641 ( 93) TATCGATA 1 chr3L:7360441-7360561 ( 79) TATCGATA 1 chr3R:27677196-27677316 ( 7) TATCGATA 1 chr2L:20097231-20097351 ( 19) TATCGATA 1 chrX:7728371-7728491 ( 25) TATCGATA 1 chr2R:18514011-18514131 ( 19) TATCGATA 1 chr3R:12350621-12350741 ( 69) TATCGATA 1 chr2R:21128430-21128550 ( 65) TATCGATA 1 chr3R:24625575-24625695 ( 52) TATCGATA 1 chr2L:6098933-6099053 ( 25) TATCGATA 1 chr2L:14701607-14701727 ( 109) TATCGATA 1 chr3L:18822540-18822660 ( 25) TATCGATA 1 chr3R:31572090-31572210 ( 18) TATCGATA 1 chrX:11694989-11695109 ( 91) TATCGATA 1 chr2L:10426834-10426954 ( 23) TATCGATA 1 chr2R:17766945-17767065 ( 58) TATCGATA 1 chr2L:1150676-1150796 ( 7) AATCGATA 1 chr3R:29997786-29997906 ( 113) AATCGATA 1 chr3L:15563037-15563157 ( 51) AATCGATA 1 chr2L:16743093-16743213 ( 105) AATCGATA 1 chrX:11807376-11807496 ( 44) AATCGATA 1 chrX:2275020-2275140 ( 77) AATCGATA 1 chr3R:27937877-27937997 ( 4) CATCGATA 1 chr3L:22071808-22071928 ( 78) CATCGATA 1 chrX:11807133-11807253 ( 66) CATCGATA 1 chr2R:16571748-16571868 ( 43) TATCGATG 1 chr2L:16356661-16356781 ( 104) TATCGATG 1 chr2L:20945429-20945549 ( 1) TATCCATA 1 chr3L:10745741-10745861 ( 88) TATCCATA 1 chr3R:4775446-4775566 ( 22) TATCCATA 1 chr2R:23551158-23551278 ( 113) AATCGATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5371 E= 2.4e-002 -45 -102 -1160 115 170 -1160 -1160 -1160 -1160 -1160 -1160 171 -1160 235 -1160 -1160 -1160 -102 224 -1160 170 -1160 -1160 -1160 -1160 -1160 -1160 171 155 -1160 -98 -1160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 2.4e-002 0.225806 0.096774 0.000000 0.677419 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.096774 0.903226 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.903226 0.000000 0.096774 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-5 regular expression -------------------------------------------------------------------------------- [TA]ATCGATA -------------------------------------------------------------------------------- Time 32.05 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:11890456-11890576 1.66e-02 47_[+2(1.51e-05)]_65 chrX:11807133-11807253 5.08e-03 33_[+2(1.51e-05)]_24_[+5(8.23e-05)]_\ 47 chrX:11805603-11805723 9.66e-02 44_[+2(1.51e-05)]_68 chrX:11806384-11806504 3.44e-02 52_[+4(2.10e-05)]_60 chr2L:16356661-16356781 2.56e-03 41_[+4(2.10e-05)]_71 chr2L:8307917-8308037 1.88e-03 44_[+2(7.47e-06)]_23_[+1(7.37e-05)]_\ 37 chr2L:453066-453186 1.67e-01 120 chr3R:5354495-5354615 3.01e-01 120 chrX:2275020-2275140 7.64e-03 47_[+2(3.91e-05)]_21_[+5(6.24e-05)]_\ 36 chr2R:17766945-17767065 4.06e-03 35_[+4(2.10e-05)]_14_[+5(3.10e-05)]_\ 55 chr2L:6424300-6424420 6.38e-01 120 chr3L:19096151-19096271 5.04e-02 30_[+2(1.51e-05)]_82 chr3L:8535145-8535265 1.68e-02 66_[+4(8.16e-06)]_46 chr3L:15140506-15140626 4.98e-02 45_[+2(1.51e-05)]_67 chr3R:8349281-8349401 2.68e-02 33_[+2(7.47e-06)]_79 chr2L:1974076-1974196 2.14e-02 44_[+3(3.96e-05)]_68 chrX:8714382-8714502 2.43e-02 38_[+4(2.10e-05)]_74 chr2L:8029378-8029498 1.25e-01 120 chr2L:10426834-10426954 2.38e-04 16_[+5(3.10e-05)]_45_[+4(8.16e-06)]_\ 43 chr3L:15142103-15142223 6.82e-02 120 chr3R:16349544-16349664 3.26e-02 25_[+1(9.43e-05)]_87 chr3L:4409577-4409697 1.32e-03 48_[+2(1.51e-05)]_10_[+1(5.06e-05)]_\ 46 chrX:11694989-11695109 2.85e-04 31_[+3(3.96e-05)]_51_[+5(3.10e-05)]_\ 22 chr2L:544582-544702 1.04e-02 36_[+4(2.10e-05)]_76 chrX:11888295-11888415 2.14e-03 89_[+4(8.16e-06)]_23 chr3R:31572090-31572210 8.60e-04 17_[+5(3.10e-05)]_17_[+5(8.23e-05)]_\ 27_[+2(7.47e-06)]_35 chr2L:2236794-2236914 3.15e-03 11_[+4(8.16e-06)]_101 chrX:11807376-11807496 1.32e-03 43_[+5(6.24e-05)]_28_[+2(1.51e-05)]_\ 33 chr3L:18822540-18822660 4.88e-02 24_[+5(3.10e-05)]_88 chr3R:5354699-5354819 1.51e-01 120 chr3L:1546574-1546694 1.65e-02 55_[+4(8.16e-06)]_57 chrX:3965029-3965149 6.44e-03 45_[+2(1.51e-05)]_67 chr2L:17784792-17784912 5.42e-04 7_[+1(2.98e-06)]_65_[+1(7.78e-06)]_\ 32 chr3R:25740487-25740607 3.03e-01 120 chr3L:10899349-10899469 2.38e-03 28_[+1(1.75e-05)]_53_[+1(2.05e-05)]_\ 23 chr2L:12040659-12040779 6.32e-01 120 chr2R:15818622-15818742 2.25e-02 71_[+3(3.25e-06)]_41 chr2R:20906666-20906786 6.14e-04 16_[+3(2.34e-05)]_63_[+1(7.78e-06)]_\ 25 chr3R:5649222-5649342 5.97e-03 69_[+2(7.47e-06)]_43 chr3L:8748978-8749098 1.55e-02 46_[+1(2.98e-06)]_66 chr3L:22071808-22071928 3.74e-05 77_[+5(8.23e-05)]_9_[+1(9.43e-05)]_\ 18 chr2L:6070930-6071050 4.68e-01 120 chrX:806039-806159 4.08e-03 60_[+2(7.47e-06)]_52 chr2R:23567409-23567529 2.23e-01 120 chr3R:27948729-27948849 2.82e-03 68_[+2(7.47e-06)]_44 chr3R:8349481-8349601 7.77e-01 120 chr2R:14618673-14618793 2.24e-04 84_[+3(3.17e-05)]_6_[+2(7.47e-06)]_\ 14 chr2L:16816107-16816227 4.99e-04 28_[+3(3.25e-06)]_84 chr2R:16551958-16552078 1.34e-02 46_[+3(3.25e-06)]_66 chr3R:18242114-18242234 7.56e-01 120 chrX:2011691-2011811 3.17e-01 120 chr3L:13411165-13411285 4.16e-02 38_[+3(2.34e-05)]_74 chrX:15594639-15594759 1.93e-02 49_[+1(1.08e-05)]_63 chr3L:6264592-6264712 6.38e-05 12_[+3(8.31e-06)]_77_[+2(3.91e-05)]_\ 15 chr2R:9400092-9400212 1.25e-03 23_[+4(2.10e-05)]_89 chr2R:7139420-7139540 8.98e-01 120 chr2L:14701607-14701727 1.76e-01 108_[+5(3.10e-05)]_4 chr2L:838114-838234 9.74e-01 120 chrX:15653662-15653782 1.17e-03 35_[+3(1.34e-05)]_49_[+1(2.53e-05)]_\ 20 chr2L:5771304-5771424 8.91e-03 40_[+3(2.66e-05)]_72 chr2L:7434835-7434955 9.76e-01 120 chrX:17820328-17820448 9.56e-04 40_[+3(3.25e-06)]_72 chr2R:5128320-5128440 6.74e-02 120 chr2L:1491934-1492054 1.26e-02 101_[+1(2.98e-06)]_11 chr2L:15248745-15248865 6.19e-01 120 chr3L:13929285-13929405 8.46e-02 120 chr2R:16800180-16800300 6.05e-05 39_[+3(3.25e-06)]_25_[+1(5.82e-05)]_\ 30_[+1(2.98e-06)]_2 chr2R:9990541-9990661 2.38e-04 16_[+1(2.53e-05)]_30_[+4(8.16e-06)]_\ 58 chr3L:14190076-14190196 9.62e-01 120 chr3R:26235183-26235303 7.77e-01 120 chr3R:16857149-16857269 6.71e-02 52_[+3(2.66e-05)]_60 chrX:7710915-7711035 2.89e-03 51_[+1(7.78e-06)]_38_[+1(7.78e-06)]_\ 15 chr3R:24273179-24273299 1.13e-02 44_[+4(2.10e-05)]_68 chr2R:21535535-21535655 3.02e-02 67_[+1(2.98e-06)]_45 chr2L:1207590-1207710 9.44e-01 120 chrX:15486580-15486700 5.85e-02 29_[+2(7.47e-06)]_83 chr2L:20734291-20734411 2.28e-01 120 chr2L:493366-493486 6.11e-01 120 chr3R:5636874-5636994 9.88e-01 120 chr2L:3472382-3472502 1.11e-05 33_[+1(7.78e-06)]_44_[+3(3.25e-06)]_\ 27 chr2R:10160276-10160396 4.40e-02 120 chr2L:6098933-6099053 1.42e-04 24_[+5(3.10e-05)]_[+5(8.23e-05)]_66_\ [+2(7.47e-06)]_6 chr2R:23551158-23551278 6.90e-02 120 chr3L:6817096-6817216 9.99e-01 120 chr3L:11993138-11993258 6.31e-02 120 chr2R:23385699-23385819 8.92e-01 120 chr3R:19875708-19875828 2.20e-02 20_[+1(1.75e-05)]_92 chr2L:9576794-9576914 3.00e-02 50_[+1(2.53e-05)]_23_[+1(2.98e-06)]_\ 31 chr3R:13078406-13078526 8.33e-02 83_[+3(2.34e-05)]_29 chr3R:16919192-16919312 6.56e-04 32_[+3(3.25e-06)]_43_[+1(5.82e-05)]_\ 29 chr2R:15381264-15381384 9.74e-01 120 chr2L:6797566-6797686 6.65e-04 7_[+3(3.25e-06)]_79_[+1(2.53e-05)]_\ 18 chr3R:27937877-27937997 6.02e-02 3_[+5(8.23e-05)]_109 chr2R:19310966-19311086 9.19e-01 120 chr3R:30056101-30056221 3.80e-01 120 chrX:6110035-6110155 2.43e-03 66_[+1(2.98e-06)]_46 chrX:16105850-16105970 3.79e-02 13_[+3(8.31e-06)]_60_[+3(5.62e-05)]_\ 31 chr2R:7566669-7566789 1.06e-02 41_[+4(2.10e-05)]_71 chr3R:23921848-23921968 6.27e-01 120 chr3L:128370-128490 2.86e-02 28_[+4(8.16e-06)]_84 chr3R:27948938-27949058 1.92e-01 120 chr3L:4413157-4413277 8.45e-01 120 chr3L:7510886-7511006 6.01e-01 120 chr3L:19896959-19897079 4.00e-03 30_[+4(8.16e-06)]_82 chr3L:20771175-20771295 9.48e-01 120 chr2L:7258235-7258355 6.48e-02 23_[+3(1.34e-05)]_46_[+3(8.31e-06)]_\ 35 chr3R:23387040-23387160 1.00e+00 120 chr2L:8528482-8528602 1.46e-02 120 chr2R:5122245-5122365 4.69e-01 120 chr2L:14160995-14161115 4.55e-03 43_[+1(7.78e-06)]_69 chrX:18774884-18775004 8.20e-01 120 chr2L:18666044-18666164 4.45e-01 120 chr2R:25085532-25085652 2.84e-03 40_[+3(8.31e-06)]_72 chr3R:6818713-6818833 5.21e-01 120 chr2L:20675992-20676112 9.61e-01 120 chrX:9352843-9352963 5.34e-01 120 chr3R:30812548-30812668 4.55e-01 120 chr3R:28676992-28677112 3.81e-01 120 chr2L:16743093-16743213 1.85e-03 56_[+1(7.78e-06)]_40_[+5(6.24e-05)]_\ 8 chr3R:16704396-16704516 8.84e-01 120 chr3R:24625575-24625695 1.88e-01 51_[+5(3.10e-05)]_61 chr3L:16544360-16544480 1.78e-01 3_[+2(3.91e-05)]_109 chr3R:19113988-19114108 9.04e-01 120 chr2R:21128430-21128550 3.86e-02 64_[+5(3.10e-05)]_48 chrX:7617086-7617206 9.35e-01 120 chr2R:21709639-21709759 7.64e-01 120 chr2R:7077030-7077150 9.68e-01 120 chr2L:20950823-20950943 8.90e-01 120 chrX:18635408-18635528 1.14e-02 46_[+1(7.78e-06)]_32_[+1(2.98e-06)]_\ 26 chrX:3968817-3968937 2.07e-01 120 chr2R:14645106-14645226 7.03e-02 120 chr3R:16748670-16748790 3.67e-05 61_[+1(7.78e-06)]_13_[+3(5.62e-05)]_\ 30 chr2R:9087684-9087804 7.24e-01 120 chr3L:11074589-11074709 8.58e-01 120 chr4:406959-407079 9.85e-02 18_[+1(5.82e-05)]_49_[+1(2.05e-05)]_\ 37 chr2R:23652360-23652480 1.76e-04 26_[+3(8.31e-06)]_31_[+3(3.25e-06)]_\ 47 chr2L:1428506-1428626 8.18e-02 120 chr3R:10648900-10649020 8.53e-01 120 chr2L:15751115-15751235 7.63e-01 120 chrX:16103583-16103703 6.42e-01 120 chr3R:22039559-22039679 4.16e-01 120 chr3L:630188-630308 3.26e-01 120 chrX:5883522-5883642 2.38e-01 61_[+1(8.33e-05)]_51 chr2L:12721116-12721236 4.73e-02 55_[+2(3.91e-05)]_57 chr2L:858239-858359 9.03e-01 120 chr2L:10856599-10856719 9.59e-01 120 chr2R:18829748-18829868 9.36e-01 120 chr3R:23293544-23293664 9.80e-01 120 chr2L:2037617-2037737 1.19e-02 120 chr3R:26436691-26436811 1.00e+00 120 chr2L:12002978-12003098 1.97e-01 120 chr3R:25004906-25005026 9.25e-01 120 chr3L:12336401-12336521 2.91e-01 120 chr3L:8751407-8751527 7.50e-01 120 chr3L:11303961-11304081 9.98e-01 120 chr2L:11091262-11091382 9.84e-01 120 chr3R:20948112-20948232 3.26e-02 69_[+3(3.25e-06)]_43 chr3R:12350621-12350741 1.97e-04 25_[+3(3.25e-06)]_35_[+5(3.10e-05)]_\ 44 chr2R:11435230-11435350 6.47e-01 120 chr2R:18514011-18514131 8.24e-03 18_[+5(3.10e-05)]_94 chr3R:4775446-4775566 2.23e-01 120 chrX:20507866-20507986 2.23e-01 120 chr3R:8744368-8744488 6.87e-01 120 chrX:1478409-1478529 2.05e-01 120 chr3L:16779701-16779821 9.51e-01 120 chr2L:10356628-10356748 9.83e-01 120 chr3L:17802263-17802383 9.51e-01 120 chr2L:11331754-11331874 9.60e-01 120 chr3R:8563983-8564103 2.10e-01 120 chr3L:11334108-11334228 9.05e-01 120 chrX:17751840-17751960 1.09e-01 86_[+1(2.05e-05)]_26 chr3R:23174872-23174992 9.56e-01 120 chr3R:14609390-14609510 9.77e-01 120 chrX:11451146-11451266 9.36e-01 120 chr2L:5520114-5520234 2.49e-01 120 chr3R:19024003-19024123 1.15e-01 23_[+1(7.37e-05)]_89 chrX:7728371-7728491 7.18e-02 24_[+5(3.10e-05)]_88 chr3L:16955308-16955428 2.82e-03 56_[+3(8.31e-06)]_56 chr2L:20097231-20097351 4.62e-02 18_[+5(3.10e-05)]_94 chr2L:21658610-21658730 1.35e-01 120 chr2L:827666-827786 9.20e-01 120 chr3L:15563037-15563157 1.99e-01 50_[+5(6.24e-05)]_62 chr3L:1295787-1295907 1.14e-01 120 chr2L:5043891-5044011 6.50e-02 11_[+1(2.05e-05)]_10_[+1(5.82e-05)]_\ 83 chrX:15384050-15384170 1.19e-01 120 chrX:2536271-2536391 2.52e-01 120 chr3R:24829991-24830111 9.68e-01 120 chr3R:16431763-16431883 1.24e-02 42_[+3(8.31e-06)]_70 chr3R:29997786-29997906 1.80e-01 112_[+5(6.24e-05)] chrX:16288529-16288649 9.88e-01 120 chr2L:19577283-19577403 7.77e-01 120 chr2L:3444911-3445031 8.44e-01 120 chr2L:15061462-15061582 3.40e-01 120 chr3L:18784694-18784814 7.49e-02 120 chrX:3431757-3431877 1.72e-01 120 chr3L:6743153-6743273 3.31e-03 28_[+4(3.44e-05)]_84 chr3R:27677196-27677316 5.29e-02 6_[+5(3.10e-05)]_106 chr3L:21196726-21196846 6.30e-01 120 chr2R:16571748-16571868 1.86e-02 120 chr3R:4387585-4387705 9.82e-01 120 chr2L:4847290-4847410 1.21e-02 120 chr3L:6189686-6189806 3.01e-01 120 chr3L:10745741-10745861 2.82e-01 120 chr2L:1150676-1150796 5.22e-03 6_[+5(6.24e-05)]_106 chr2L:21143034-21143154 6.87e-01 120 chr3R:9791307-9791427 9.96e-01 120 chr3R:9370597-9370717 3.41e-01 120 chr3R:20588516-20588636 1.63e-01 120 chr2R:8914043-8914163 1.32e-01 120 chrX:9356449-9356569 9.88e-01 120 chr2L:4441005-4441125 2.64e-01 120 chr2L:14094784-14094904 2.31e-01 120 chr2L:602459-602579 5.69e-05 7_[+1(2.98e-06)]_105 chr3L:7360441-7360561 6.53e-03 78_[+5(3.10e-05)]_34 chr2L:16709738-16709858 9.98e-01 120 chrX:16782219-16782339 9.14e-01 120 chrX:2149662-2149782 8.38e-02 40_[+2(5.45e-05)]_72 chr3L:4607796-4607916 7.85e-01 120 chr2R:12337712-12337832 5.48e-02 120 chr3R:23028664-23028784 9.71e-01 120 chr3L:1647442-1647562 8.12e-03 120 chr3L:11403678-11403798 9.38e-01 120 chr3R:11674113-11674233 9.30e-01 120 chr3R:8960452-8960572 9.99e-01 120 chrX:11852495-11852615 9.82e-03 32_[+2(1.51e-05)]_80 chr2L:9503147-9503267 5.97e-01 120 chr2L:5326957-5327077 8.61e-01 120 chr3L:12277521-12277641 4.47e-02 92_[+5(3.10e-05)]_20 chr2L:10468578-10468698 7.74e-01 120 chr2R:13198322-13198442 3.25e-01 120 chrX:13784615-13784735 8.64e-01 120 chr2L:21163520-21163640 8.85e-01 120 chr2R:11359175-11359295 6.05e-01 120 chr3R:16469685-16469805 8.73e-01 120 chr3L:13006588-13006708 5.33e-02 85_[+2(5.45e-05)]_27 chr2L:9224620-9224740 1.19e-01 120 chrX:11570418-11570538 9.99e-01 120 chrX:12242513-12242633 5.49e-01 120 chr2L:13073891-13074011 2.79e-01 120 chr2R:15201391-15201511 4.78e-01 120 chrX:9349357-9349477 4.87e-01 120 chr2L:20945429-20945549 1.13e-01 120 chr3L:12504137-12504257 1.64e-01 103_[+4(2.62e-05)]_9 chr3R:30195725-30195845 2.73e-01 120 chr3R:8207076-8207196 8.99e-01 120 chr2R:23940207-23940327 2.23e-01 108_[+1(8.33e-05)]_4 chr2R:14434325-14434445 3.65e-04 29_[+3(2.34e-05)]_52_[+1(2.98e-06)]_\ 23 chr3R:21151487-21151607 9.05e-01 120 chr3L:18786908-18787028 6.05e-01 120 chr3R:21102031-21102151 3.03e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************