******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Vsx2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:6030732-6030852 1.0000 120 chrX:17761066-17761186 1.0000 120 chr3L:14610925-14611045 1.0000 120 chr3L:1514417-1514537 1.0000 120 chr3R:17051435-17051555 1.0000 120 chr2R:20632188-20632308 1.0000 120 chr3R:7970470-7970590 1.0000 120 chr3L:17392888-17393008 1.0000 120 chr2L:5427348-5427468 1.0000 120 chr3R:15647646-15647766 1.0000 120 chr3L:11695960-11696080 1.0000 120 chr2L:16482393-16482513 1.0000 120 chr2L:15387990-15388110 1.0000 120 chr2L:5428091-5428211 1.0000 120 chr3R:14388384-14388504 1.0000 120 chr3R:20002479-20002599 1.0000 120 chr2L:88657-88777 1.0000 120 chr3R:9607253-9607373 1.0000 120 chr3R:25586585-25586705 1.0000 120 chr3L:7610712-7610832 1.0000 120 chrX:17804181-17804301 1.0000 120 chrX:5044871-5044991 1.0000 120 chrX:5718253-5718373 1.0000 120 chr2L:13552768-13552888 1.0000 120 chr2L:13136126-13136246 1.0000 120 chr3L:11520757-11520877 1.0000 120 chr2R:16827862-16827982 1.0000 120 chr3L:8840968-8841088 1.0000 120 chr2L:17769187-17769307 1.0000 120 chr3R:23164769-23164889 1.0000 120 chrX:7970929-7971049 1.0000 120 chr2R:24681853-24681973 1.0000 120 chr3R:20002063-20002183 1.0000 120 chrX:9881945-9882065 1.0000 120 chr3L:14157292-14157412 1.0000 120 chr2R:6769730-6769850 1.0000 120 chr2L:604828-604948 1.0000 120 chr2L:19070174-19070294 1.0000 120 chr3R:19357964-19358084 1.0000 120 chr2R:22845899-22846019 1.0000 120 chr2L:5119160-5119280 1.0000 120 chrX:21128010-21128130 1.0000 120 chr2L:15385852-15385972 1.0000 120 chrX:5735732-5735852 1.0000 120 chr3R:13938595-13938715 1.0000 120 chr2L:682545-682665 1.0000 120 chr3R:22681478-22681598 1.0000 120 chr2R:9493354-9493474 1.0000 120 chrX:19326201-19326321 1.0000 120 chr3L:10551239-10551359 1.0000 120 chr3L:16811971-16812091 1.0000 120 chr2L:14297625-14297745 1.0000 120 chr3L:8044017-8044137 1.0000 120 chr3R:9917067-9917187 1.0000 120 chr3L:12325109-12325229 1.0000 120 chrX:13542234-13542354 1.0000 120 chrX:3830959-3831079 1.0000 120 chr3L:22179537-22179657 1.0000 120 chr3L:11631448-11631568 1.0000 120 chr3R:13883230-13883350 1.0000 120 chr3R:6922567-6922687 1.0000 120 chr2R:22942230-22942350 1.0000 120 chr3L:17625818-17625938 1.0000 120 chrX:13240510-13240630 1.0000 120 chr2R:12785773-12785893 1.0000 120 chr2L:14512011-14512131 1.0000 120 chr3L:3674599-3674719 1.0000 120 chrX:5563578-5563698 1.0000 120 chr3R:16174633-16174753 1.0000 120 chr2R:7261884-7262004 1.0000 120 chr3R:6832513-6832633 1.0000 120 chr2L:8285628-8285748 1.0000 120 chr2R:24868792-24868912 1.0000 120 chr3L:1452933-1453053 1.0000 120 chr3L:4408594-4408714 1.0000 120 chr2L:14571768-14571888 1.0000 120 chr2R:24787742-24787862 1.0000 120 chr2R:23643187-23643307 1.0000 120 chr3R:21913718-21913838 1.0000 120 chr2R:5106865-5106985 1.0000 120 chrX:4441088-4441208 1.0000 120 chr2R:12961419-12961539 1.0000 120 chr3R:15448759-15448879 1.0000 120 chr3L:10379396-10379516 1.0000 120 chr2R:15043921-15044041 1.0000 120 chr3L:18253377-18253497 1.0000 120 chr3R:10068902-10069022 1.0000 120 chrX:4440374-4440494 1.0000 120 chr3L:17406498-17406618 1.0000 120 chr2L:18469819-18469939 1.0000 120 chr3L:10406513-10406633 1.0000 120 chr3R:11941238-11941358 1.0000 120 chr2L:1748576-1748696 1.0000 120 chr3R:13890039-13890159 1.0000 120 chr3R:21648301-21648421 1.0000 120 chr3R:28026186-28026306 1.0000 120 chr3L:12800339-12800459 1.0000 120 chrX:4448612-4448732 1.0000 120 chr2L:9213768-9213888 1.0000 120 chrX:12239833-12239953 1.0000 120 chr3R:13860315-13860435 1.0000 120 chr2R:11414403-11414523 1.0000 120 chr3R:17601983-17602103 1.0000 120 chrX:14173937-14174057 1.0000 120 chrX:6305503-6305623 1.0000 120 chr3R:13938219-13938339 1.0000 120 chr3L:17485987-17486107 1.0000 120 chr2R:19912361-19912481 1.0000 120 chr2R:22896729-22896849 1.0000 120 chr2L:12824345-12824465 1.0000 120 chr3L:620072-620192 1.0000 120 chr2L:15227551-15227671 1.0000 120 chr3L:8643920-8644040 1.0000 120 chr2R:7241307-7241427 1.0000 120 chr3R:4873597-4873717 1.0000 120 chr3L:22161903-22162023 1.0000 120 chr2R:11561537-11561657 1.0000 120 chr3L:7949914-7950034 1.0000 120 chr2L:12840952-12841072 1.0000 120 chr3L:3537081-3537201 1.0000 120 chr3R:16113297-16113417 1.0000 120 chr3L:9007465-9007585 1.0000 120 chr3L:2807535-2807655 1.0000 120 chr2R:20975349-20975469 1.0000 120 chr3R:30226271-30226391 1.0000 120 chr2R:7086168-7086288 1.0000 120 chr2R:24858552-24858672 1.0000 120 chr2L:8855013-8855133 1.0000 120 chr3L:19703427-19703547 1.0000 120 chr2R:6970765-6970885 1.0000 120 chr3R:4884494-4884614 1.0000 120 chr2L:21245849-21245969 1.0000 120 chr2R:18347940-18348060 1.0000 120 chr3R:7950040-7950160 1.0000 120 chr2R:20564595-20564715 1.0000 120 chr2L:14514468-14514588 1.0000 120 chr3R:24299340-24299460 1.0000 120 chr3L:13474840-13474960 1.0000 120 chr2R:8323374-8323494 1.0000 120 chr2L:623355-623475 1.0000 120 chr3L:6358195-6358315 1.0000 120 chr3L:12543426-12543546 1.0000 120 chr3R:24593893-24594013 1.0000 120 chr2R:9030926-9031046 1.0000 120 chr3R:19333836-19333956 1.0000 120 chr3R:30827704-30827824 1.0000 120 chr2L:1432754-1432874 1.0000 120 chr3R:14917665-14917785 1.0000 120 chr3L:19678351-19678471 1.0000 120 chr2L:11966566-11966686 1.0000 120 chr2R:12412917-12413037 1.0000 120 chr2L:18604043-18604163 1.0000 120 chr3L:15196339-15196459 1.0000 120 chr3R:5284431-5284551 1.0000 120 chrX:19667906-19668026 1.0000 120 chr2R:20974870-20974990 1.0000 120 chr3R:25313856-25313976 1.0000 120 chr2R:19913465-19913585 1.0000 120 chr2L:657779-657899 1.0000 120 chr2R:7110481-7110601 1.0000 120 chr2R:17159176-17159296 1.0000 120 chr3R:15454585-15454705 1.0000 120 chr2R:14828719-14828839 1.0000 120 chr3L:17493706-17493826 1.0000 120 chr2L:21248895-21249015 1.0000 120 chrX:6734689-6734809 1.0000 120 chr2L:7911777-7911897 1.0000 120 chr2L:618613-618733 1.0000 120 chrX:20238782-20238902 1.0000 120 chr3L:8703331-8703451 1.0000 120 chr2R:23722532-23722652 1.0000 120 chr2R:9005312-9005432 1.0000 120 chrX:4449974-4450094 1.0000 120 chr3R:5554998-5555118 1.0000 120 chrX:17917657-17917777 1.0000 120 chrX:2919501-2919621 1.0000 120 chrX:2964804-2964924 1.0000 120 chr2L:5263876-5263996 1.0000 120 chrX:21071206-21071326 1.0000 120 chr2R:15237630-15237750 1.0000 120 chr2R:8006975-8007095 1.0000 120 chr2L:21024099-21024219 1.0000 120 chr2L:702285-702405 1.0000 120 chr2L:1473929-1474049 1.0000 120 chr3R:16501093-16501213 1.0000 120 chrX:5573602-5573722 1.0000 120 chrX:1320216-1320336 1.0000 120 chrX:10818647-10818767 1.0000 120 chrX:18492071-18492191 1.0000 120 chrX:11527202-11527322 1.0000 120 chrX:15676207-15676327 1.0000 120 chr3R:5208474-5208594 1.0000 120 chr2R:21140251-21140371 1.0000 120 chr3R:28996854-28996974 1.0000 120 chr3R:19310204-19310324 1.0000 120 chrX:6990545-6990665 1.0000 120 chr2L:13554701-13554821 1.0000 120 chrX:12745236-12745356 1.0000 120 chr3R:14462995-14463115 1.0000 120 chr2L:669656-669776 1.0000 120 chr2L:9155087-9155207 1.0000 120 chr3L:16935440-16935560 1.0000 120 chr2L:15389460-15389580 1.0000 120 chr3R:30029347-30029467 1.0000 120 chr3R:19286070-19286190 1.0000 120 chr3L:11021814-11021934 1.0000 120 chrX:13241505-13241625 1.0000 120 chrX:17774673-17774793 1.0000 120 chr3L:763932-764052 1.0000 120 chr2R:22308065-22308185 1.0000 120 chrX:5549502-5549622 1.0000 120 chr3R:8861152-8861272 1.0000 120 chr2R:16181234-16181354 1.0000 120 chrX:19001704-19001824 1.0000 120 chr2R:10581027-10581147 1.0000 120 chr3L:18186920-18187040 1.0000 120 chr2L:11871293-11871413 1.0000 120 chr2L:21070910-21071030 1.0000 120 chr3L:21188007-21188127 1.0000 120 chr2L:358369-358489 1.0000 120 chrX:1169577-1169697 1.0000 120 chrX:15091283-15091403 1.0000 120 chr3R:8787567-8787687 1.0000 120 chr2R:23419557-23419677 1.0000 120 chr2L:14507088-14507208 1.0000 120 chr3L:11314791-11314911 1.0000 120 chr2R:18648557-18648677 1.0000 120 chr3L:11008041-11008161 1.0000 120 chr3L:3337472-3337592 1.0000 120 chr2R:14320220-14320340 1.0000 120 chr3R:29460530-29460650 1.0000 120 chr3L:14649206-14649326 1.0000 120 chrX:5245155-5245275 1.0000 120 chr3L:2408252-2408372 1.0000 120 chr2R:16576572-16576692 1.0000 120 chrX:9993856-9993976 1.0000 120 chr3L:22377618-22377738 1.0000 120 chr2L:7355751-7355871 1.0000 120 chr3L:15763315-15763435 1.0000 120 chr2L:21763743-21763863 1.0000 120 chr3L:13182989-13183109 1.0000 120 chr2L:2564910-2565030 1.0000 120 chr2L:13847816-13847936 1.0000 120 chr2R:16840710-16840830 1.0000 120 chr2L:13129989-13130109 1.0000 120 chr2R:18208100-18208220 1.0000 120 chr2L:7282501-7282621 1.0000 120 chr3L:7707487-7707607 1.0000 120 chr3R:20890547-20890667 1.0000 120 chr2R:13552506-13552626 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Vsx2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Vsx2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.258 C 0.236 G 0.244 T 0.262 Background letter frequencies (from file dataset with add-one prior applied): A 0.258 C 0.236 G 0.244 T 0.262 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TAATTAGC MEME-1 width = 8 sites = 68 llr = 574 E-value = 1.5e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAATTAGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 29a::8:: pos.-specific C 1::::::9 probability G :1:::1a1 matrix T 71:aa1:: bits 2.1 1.9 *** 1.7 *** ** 1.5 *** ** Relative 1.2 **** ** Entropy 1.0 ******* (12.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAATTAGC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAATTAGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:21763743-21763863 91 1.78e-05 TCGGTAGGCT TAATTAGC GGCGAGTAAT chr3R:29460530-29460650 22 1.78e-05 GATGAGCTGC TAATTAGC AGCTGCGAtt chr3L:11314791-11314911 42 1.78e-05 GAACGCAACT TAATTAGC CAACGACTTT chr3R:8787567-8787687 15 1.78e-05 AGCTGTCAGC TAATTAGC CTCTAAGCCC chr2L:1432754-1432874 94 1.78e-05 ATTTGGTCAT TAATTAGC CCACAGCTTT chr2R:8323374-8323494 85 1.78e-05 ATGCCTTTTG TAATTAGC AGCCATTTCA chr2L:8855013-8855133 39 1.78e-05 GTAAACAACT TAATTAGC AACCAGGTAG chr2L:12824345-12824465 16 1.78e-05 GAGCTCAAAC TAATTAGC CCGAGGGGCC chr3L:10406513-10406633 90 1.78e-05 TGTTCGTTGC TAATTAGC CCAAGGGGTT chr3L:8044017-8044137 70 1.78e-05 GCCAAAATGT TAATTAGC TGCAAGCCGC chrX:5735732-5735852 57 1.78e-05 GTGAGCATTT TAATTAGC CTGCATGCAA chrX:21128010-21128130 112 1.78e-05 CGCTGTATTT TAATTAGC C chr3L:8840968-8841088 22 1.78e-05 TTTGCCAAGG TAATTAGC CAGTCACAAC chr2R:16827862-16827982 17 1.78e-05 TTCGGTTTTT TAATTAGC CGCCGCTGGC chr2L:13552768-13552888 40 1.78e-05 CACTCTTGGC TAATTAGC CAAAGTCAAG chr3L:11695960-11696080 46 1.78e-05 CGAATTCTTA TAATTAGC CCACGTCAGG chr2R:20632188-20632308 19 1.78e-05 GTTTTATTGC TAATTAGC TGGACACACT chr3L:1514417-1514537 91 1.78e-05 GTCGTTTGTT TAATTAGC CAGGCAGGTG chr3R:8861152-8861272 63 3.53e-05 CGAGGATGCC AAATTAGC AGCTACCGTC chr3L:763932-764052 38 3.53e-05 GGGGAGCAGC AAATTAGC CTCTGACAAC chr3L:11021814-11021934 4 3.53e-05 CGA AAATTAGC TGCCGTATCT chrX:17917657-17917777 15 3.53e-05 GGGGCCGAGT AAATTAGC CAAAAGTCAA chr2R:7110481-7110601 23 3.53e-05 CCGCAAAATA AAATTAGC CAAACAAGCC chr3L:15196339-15196459 49 3.53e-05 CGGTTGATTC AAATTAGC CACGTCTCCT chr3R:28026186-28026306 19 3.53e-05 GAATATGTGC AAATTAGC ATATCAAATG chr3R:6832513-6832633 43 3.53e-05 ATGCGCACAT AAATTAGC CGAGCTGCGC chrX:13542234-13542354 74 3.53e-05 TTGAAATCAT AAATTAGC CCTAATTGGC chr3L:12325109-12325229 32 3.53e-05 GGGCACCGTC AAATTAGC CCACTTCAGG chr2L:17769187-17769307 85 3.53e-05 AGTGATGAGC AAATTAGC TGAAATTGAG chr3L:17392888-17393008 64 3.53e-05 CTCTGGTGCC AAATTAGC CTACTTGGGT chr3R:17051435-17051555 20 3.53e-05 GAACTCTCGA AAATTAGC TTATGAAACT chr3R:28996854-28996974 89 5.21e-05 TTACCTATGC TAATTGGC TTAAATGCAA chrX:18492071-18492191 78 5.21e-05 CCACATCGAC TAATTGGC CATAATGCTG chr2R:6970765-6970885 71 5.21e-05 CCAACCCCAG TAATTGGC ATTATTAGCC chr3L:2807535-2807655 108 5.21e-05 CTCGTTTCGC TAATTGGC CCCAA chr3L:4408594-4408714 85 5.21e-05 CTGGTCGCCT TAATTGGC CAAAAGGGTA chr3R:20002479-20002599 102 5.21e-05 GCTGATAGTT TAATTGGC CTGGACTTTA chr2R:8006975-8007095 20 7.02e-05 CAGTTTCTTA TAATTTGC CTAGAAATCA chr2R:18347940-18348060 64 7.02e-05 ATGTTGCAGC TAATTTGC TTGTTCGACC chr3R:30226271-30226391 46 7.02e-05 ACAACCAGGC TAATTTGC AAATAATATG chr3L:10379396-10379516 87 7.02e-05 TCATTGCATT TAATTTGC GGAGTACGCC chr3R:13938595-13938715 34 7.02e-05 AAATTTCAGC TAATTTGC CAACATTTAA chr2L:2564910-2565030 64 1.03e-04 GTTCTGGCTT TGATTAGC TGCAGTAAAT chrX:5245155-5245275 80 1.03e-04 acacacgcaG TGATTAGC TGTCATTtga chr3R:16501093-16501213 112 1.03e-04 TGCCCAACGT TGATTAGC C chrX:21071206-21071326 50 1.03e-04 ACTGACAGCT CAATTAGC ACTGAAAATG chr2R:22896729-22896849 12 1.03e-04 TTGCAACTTT TGATTAGC TTTGGATTCC chrX:13240510-13240630 57 1.03e-04 TATTTTCAGC CAATTAGC GGCGCAAAGG chr2L:19070174-19070294 89 1.03e-04 CAGCTGACTC CAATTAGC CACATGGCAC chr3R:14388384-14388504 48 1.03e-04 GACGTGCCGC TGATTAGC CGGCAGTTCT chr3L:620072-620192 30 1.21e-04 GTCGCCGGCT TTATTAGC CAAGTCTGCA chr3R:13883230-13883350 40 1.21e-04 TCTTGTCATG TTATTAGC AGCAATTTAA chr2R:9493354-9493474 97 1.21e-04 GCAGGATCGC TTATTAGC CATCGTTGAA chr2R:22845899-22846019 40 1.21e-04 TTGAAGCTGC TTATTAGC TGGCATTGCC chr2L:5427348-5427468 62 1.21e-04 CTCGAATTTA TTATTAGC CCTCTCCGAC chrX:17774673-17774793 76 1.39e-04 GCGGCACGCA TAATTAGG TACACTTAAC chr3R:19357964-19358084 49 1.39e-04 CGGCTTTGGC TAATTAGG AGCTTCGGGG chr3R:23164769-23164889 98 1.39e-04 CATTGGCAGC TAATTAGG CACAGTTTGT chrX:5718253-5718373 32 1.39e-04 TTTGCCTGGC TAATTAGG CGTAATCTCG chr2R:19912361-19912481 95 1.56e-04 AAAATTGTTT AAATTGGC TGGAATTTCT chr3L:12800339-12800459 43 1.56e-04 AAGGCAAGGC AAATTGGC TGTTTTGCTT chr3R:13938219-13938339 14 1.74e-04 TGCGCTCATA AAATTTGC GCCCTTTTTT chr3L:17493706-17493826 5 2.25e-04 CATC TAATTACC GCACTCGAAA chr3R:21913718-21913838 1 2.25e-04 . TAATTACC AAAGAGCCCT chr2L:13847816-13847936 2 2.45e-04 T TAATTAGT CCCCATTCCG chr3L:22179537-22179657 57 2.45e-04 GGACTCACTC TAATTAGT CAATTTTTTT chr2L:16482393-16482513 16 3.13e-04 CCCTTTTCCA TAATTAAC TAGATGGTTT chr3L:17485987-17486107 89 3.64e-04 GCGTTGCACT CAATTTGC TTGATTATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAATTAGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:21763743-21763863 1.8e-05 90_[+1]_22 chr3R:29460530-29460650 1.8e-05 21_[+1]_91 chr3L:11314791-11314911 1.8e-05 41_[+1]_71 chr3R:8787567-8787687 1.8e-05 14_[+1]_98 chr2L:1432754-1432874 1.8e-05 93_[+1]_19 chr2R:8323374-8323494 1.8e-05 84_[+1]_28 chr2L:8855013-8855133 1.8e-05 38_[+1]_74 chr2L:12824345-12824465 1.8e-05 15_[+1]_97 chr3L:10406513-10406633 1.8e-05 89_[+1]_23 chr3L:8044017-8044137 1.8e-05 69_[+1]_43 chrX:5735732-5735852 1.8e-05 56_[+1]_56 chrX:21128010-21128130 1.8e-05 111_[+1]_1 chr3L:8840968-8841088 1.8e-05 21_[+1]_91 chr2R:16827862-16827982 1.8e-05 16_[+1]_96 chr2L:13552768-13552888 1.8e-05 39_[+1]_73 chr3L:11695960-11696080 1.8e-05 45_[+1]_67 chr2R:20632188-20632308 1.8e-05 18_[+1]_94 chr3L:1514417-1514537 1.8e-05 90_[+1]_22 chr3R:8861152-8861272 3.5e-05 62_[+1]_50 chr3L:763932-764052 3.5e-05 37_[+1]_75 chr3L:11021814-11021934 3.5e-05 3_[+1]_109 chrX:17917657-17917777 3.5e-05 14_[+1]_98 chr2R:7110481-7110601 3.5e-05 22_[+1]_90 chr3L:15196339-15196459 3.5e-05 48_[+1]_64 chr3R:28026186-28026306 3.5e-05 18_[+1]_94 chr3R:6832513-6832633 3.5e-05 42_[+1]_70 chrX:13542234-13542354 3.5e-05 73_[+1]_39 chr3L:12325109-12325229 3.5e-05 31_[+1]_81 chr2L:17769187-17769307 3.5e-05 84_[+1]_28 chr3L:17392888-17393008 3.5e-05 63_[+1]_49 chr3R:17051435-17051555 3.5e-05 19_[+1]_93 chr3R:28996854-28996974 5.2e-05 88_[+1]_24 chrX:18492071-18492191 5.2e-05 77_[+1]_35 chr2R:6970765-6970885 5.2e-05 70_[+1]_42 chr3L:2807535-2807655 5.2e-05 107_[+1]_5 chr3L:4408594-4408714 5.2e-05 84_[+1]_28 chr3R:20002479-20002599 5.2e-05 101_[+1]_11 chr2R:8006975-8007095 7e-05 19_[+1]_93 chr2R:18347940-18348060 7e-05 63_[+1]_49 chr3R:30226271-30226391 7e-05 45_[+1]_67 chr3L:10379396-10379516 7e-05 86_[+1]_26 chr3R:13938595-13938715 7e-05 33_[+1]_79 chr2L:2564910-2565030 0.0001 63_[+1]_49 chrX:5245155-5245275 0.0001 79_[+1]_33 chr3R:16501093-16501213 0.0001 111_[+1]_1 chrX:21071206-21071326 0.0001 49_[+1]_63 chr2R:22896729-22896849 0.0001 11_[+1]_101 chrX:13240510-13240630 0.0001 56_[+1]_56 chr2L:19070174-19070294 0.0001 88_[+1]_24 chr3R:14388384-14388504 0.0001 47_[+1]_65 chr3L:620072-620192 0.00012 29_[+1]_83 chr3R:13883230-13883350 0.00012 39_[+1]_73 chr2R:9493354-9493474 0.00012 96_[+1]_16 chr2R:22845899-22846019 0.00012 39_[+1]_73 chr2L:5427348-5427468 0.00012 61_[+1]_51 chrX:17774673-17774793 0.00014 75_[+1]_37 chr3R:19357964-19358084 0.00014 48_[+1]_64 chr3R:23164769-23164889 0.00014 97_[+1]_15 chrX:5718253-5718373 0.00014 31_[+1]_81 chr2R:19912361-19912481 0.00016 94_[+1]_18 chr3L:12800339-12800459 0.00016 42_[+1]_70 chr3R:13938219-13938339 0.00017 13_[+1]_99 chr3L:17493706-17493826 0.00023 4_[+1]_108 chr3R:21913718-21913838 0.00023 [+1]_112 chr2L:13847816-13847936 0.00025 1_[+1]_111 chr3L:22179537-22179657 0.00025 56_[+1]_56 chr2L:16482393-16482513 0.00031 15_[+1]_97 chr3L:17485987-17486107 0.00036 88_[+1]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAATTAGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAATTAGC width=8 seqs=68 chr2L:21763743-21763863 ( 91) TAATTAGC 1 chr3R:29460530-29460650 ( 22) TAATTAGC 1 chr3L:11314791-11314911 ( 42) TAATTAGC 1 chr3R:8787567-8787687 ( 15) TAATTAGC 1 chr2L:1432754-1432874 ( 94) TAATTAGC 1 chr2R:8323374-8323494 ( 85) TAATTAGC 1 chr2L:8855013-8855133 ( 39) TAATTAGC 1 chr2L:12824345-12824465 ( 16) TAATTAGC 1 chr3L:10406513-10406633 ( 90) TAATTAGC 1 chr3L:8044017-8044137 ( 70) TAATTAGC 1 chrX:5735732-5735852 ( 57) TAATTAGC 1 chrX:21128010-21128130 ( 112) TAATTAGC 1 chr3L:8840968-8841088 ( 22) TAATTAGC 1 chr2R:16827862-16827982 ( 17) TAATTAGC 1 chr2L:13552768-13552888 ( 40) TAATTAGC 1 chr3L:11695960-11696080 ( 46) TAATTAGC 1 chr2R:20632188-20632308 ( 19) TAATTAGC 1 chr3L:1514417-1514537 ( 91) TAATTAGC 1 chr3R:8861152-8861272 ( 63) AAATTAGC 1 chr3L:763932-764052 ( 38) AAATTAGC 1 chr3L:11021814-11021934 ( 4) AAATTAGC 1 chrX:17917657-17917777 ( 15) AAATTAGC 1 chr2R:7110481-7110601 ( 23) AAATTAGC 1 chr3L:15196339-15196459 ( 49) AAATTAGC 1 chr3R:28026186-28026306 ( 19) AAATTAGC 1 chr3R:6832513-6832633 ( 43) AAATTAGC 1 chrX:13542234-13542354 ( 74) AAATTAGC 1 chr3L:12325109-12325229 ( 32) AAATTAGC 1 chr2L:17769187-17769307 ( 85) AAATTAGC 1 chr3L:17392888-17393008 ( 64) AAATTAGC 1 chr3R:17051435-17051555 ( 20) AAATTAGC 1 chr3R:28996854-28996974 ( 89) TAATTGGC 1 chrX:18492071-18492191 ( 78) TAATTGGC 1 chr2R:6970765-6970885 ( 71) TAATTGGC 1 chr3L:2807535-2807655 ( 108) TAATTGGC 1 chr3L:4408594-4408714 ( 85) TAATTGGC 1 chr3R:20002479-20002599 ( 102) TAATTGGC 1 chr2R:8006975-8007095 ( 20) TAATTTGC 1 chr2R:18347940-18348060 ( 64) TAATTTGC 1 chr3R:30226271-30226391 ( 46) TAATTTGC 1 chr3L:10379396-10379516 ( 87) TAATTTGC 1 chr3R:13938595-13938715 ( 34) TAATTTGC 1 chr2L:2564910-2565030 ( 64) TGATTAGC 1 chrX:5245155-5245275 ( 80) TGATTAGC 1 chr3R:16501093-16501213 ( 112) TGATTAGC 1 chrX:21071206-21071326 ( 50) CAATTAGC 1 chr2R:22896729-22896849 ( 12) TGATTAGC 1 chrX:13240510-13240630 ( 57) CAATTAGC 1 chr2L:19070174-19070294 ( 89) CAATTAGC 1 chr3R:14388384-14388504 ( 48) TGATTAGC 1 chr3L:620072-620192 ( 30) TTATTAGC 1 chr3R:13883230-13883350 ( 40) TTATTAGC 1 chr2R:9493354-9493474 ( 97) TTATTAGC 1 chr2R:22845899-22846019 ( 40) TTATTAGC 1 chr2L:5427348-5427468 ( 62) TTATTAGC 1 chrX:17774673-17774793 ( 76) TAATTAGG 1 chr3R:19357964-19358084 ( 49) TAATTAGG 1 chr3R:23164769-23164889 ( 98) TAATTAGG 1 chrX:5718253-5718373 ( 32) TAATTAGG 1 chr2R:19912361-19912481 ( 95) AAATTGGC 1 chr3L:12800339-12800459 ( 43) AAATTGGC 1 chr3R:13938219-13938339 ( 14) AAATTTGC 1 chr3L:17493706-17493826 ( 5) TAATTACC 1 chr3R:21913718-21913838 ( 1) TAATTACC 1 chr2L:13847816-13847936 ( 2) TAATTAGT 1 chr3L:22179537-22179657 ( 57) TAATTAGT 1 chr2L:16482393-16482513 ( 16) TAATTAAC 1 chr3L:17485987-17486107 ( 89) CAATTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAATTAGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.76473 E= 1.5e-028 -13 -201 -1273 143 173 -1273 -173 -183 196 -1273 -1273 -1273 -1273 -1273 -1273 193 -1273 -1273 -1273 193 160 -1273 -105 -135 -413 -300 197 -1273 -1273 195 -205 -315 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAATTAGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 1.5e-028 0.235294 0.058824 0.000000 0.705882 0.852941 0.000000 0.073529 0.073529 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.779412 0.000000 0.117647 0.102941 0.014706 0.029412 0.955882 0.000000 0.000000 0.911765 0.058824 0.029412 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAATTAGC MEME-1 regular expression -------------------------------------------------------------------------------- [TA]AATTAGC -------------------------------------------------------------------------------- Time 8.67 secs. ******************************************************************************** ******************************************************************************** MOTIF RGCYAATT MEME-2 width = 8 sites = 51 llr = 426 E-value = 3.5e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGCYAATT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3:::aa11 pos.-specific C ::a5:::: probability G 6a::::1: matrix T 1::5::89 bits 2.1 ** 1.9 ** ** 1.7 ** ** 1.5 ** ** * Relative 1.2 ** ** * Entropy 1.0 ******* (12.1 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCTAATT consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCYAATT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14320220-14320340 49 1.68e-05 CTCGCAGCAG GGCTAATT ATGGCAAATA chr2L:14507088-14507208 78 1.68e-05 ATTTAATTGA GGCTAATT TAAGGCGAAA chr3R:14462995-14463115 45 1.68e-05 CGATAAAAAT GGCTAATT AAAGTGGGAG chr3L:7949914-7950034 56 1.68e-05 GTGTGTGAGT GGCTAATT TAAAGTGCGA chr3R:11941238-11941358 10 1.68e-05 AGCGGAGGG GGCTAATT CCAGTTGATG chr3R:10068902-10069022 14 1.68e-05 aatcaTATGA GGCTAATT AAGAGCCCAT chrX:5563578-5563698 3 1.68e-05 AT GGCTAATT TTGCACAAAG chr3R:20002063-20002183 101 1.68e-05 TTCTGAGGCT GGCTAATT TGTCCAGGGG chrX:7970929-7971049 56 1.68e-05 GCTTTCGGCT GGCTAATT GCCTTGACAT chr3R:7970470-7970590 61 1.68e-05 CTTTTAACCT GGCTAATT TTCAGCTCCC chrX:6030732-6030852 55 1.68e-05 TGACAGGCAT GGCTAATT ATCGAGCGCC chrX:9993856-9993976 17 3.20e-05 cttttggcCT GGCCAATT CGGGTCTCGG chr3R:19310204-19310324 34 3.20e-05 TAACCTTTTG GGCCAATT TACTCGGTTT chr3R:16113297-16113417 48 3.20e-05 ATCAACATTT GGCCAATT TAAAGTGGCA chr2L:15227551-15227671 113 3.20e-05 ATGGGTCTTT GGCCAATT chr2L:8285628-8285748 20 3.20e-05 GAGTCAATTA GGCCAATT ACGTTGACTT chr3L:11631448-11631568 82 3.20e-05 CTTTTTCCTC GGCCAATT TCAGCACATT chr3R:9607253-9607373 71 3.20e-05 CCGTTTGCCA GGCCAATT ACCCCGCCCC chr2L:15387990-15388110 32 3.20e-05 ACGTCAATTT GGCCAATT ACCCAGAGCG chrX:2964804-2964924 54 4.98e-05 CTCCCCATGC AGCTAATT GAGTTATATC chr2R:20975349-20975469 20 4.98e-05 CATAAGAGAT AGCTAATT AAGTCTTAGC chr3L:22161903-22162023 59 4.98e-05 ACTGGCAAAC AGCTAATT AAGTATGGAG chr3R:17601983-17602103 68 4.98e-05 AAAGTGTACA AGCTAATT TTCATGCTCG chr3R:6922567-6922687 76 4.98e-05 AGATACTCGC AGCTAATT ATCGTAATTA chr3R:9917067-9917187 16 4.98e-05 GCATATAATG AGCTAATT AGAAATAAAA chrX:19326201-19326321 110 4.98e-05 CAGGTTCAGC AGCTAATT TTG chr2L:682545-682665 46 4.98e-05 GCGTTGATGA AGCTAATT ATATAGTGCA chrX:10818647-10818767 50 6.58e-05 AGCCGCGACA AGCCAATT AGAGGTGGCG chr2L:657779-657899 49 6.58e-05 ACTTAATGGT AGCCAATT AGTTGGCATT chr2R:7110481-7110601 79 8.23e-05 GGGAGGAGCT GGCTAAAT TGAAGGGCGT chr2L:702285-702405 70 1.14e-04 CACATAACTT GGCCAAAT GGGCAGATCG chr3L:10551239-10551359 101 1.14e-04 ATAATAATGA GGCTAATA TAGGGTGGTA chr2L:604828-604948 43 1.14e-04 TGTTGAATAT GGCTAATA ACCAAAAGAG chr2L:17769187-17769307 53 1.14e-04 TTTTTCTGTC GGCCAAAT GGAGTGTTTG chrX:17804181-17804301 46 1.14e-04 TGTTTTACCA GGCTAATA ACTGCCGAAA chrX:13241505-13241625 109 1.62e-04 TGTCGCCGGC TGCTAATT AAAG chr3L:19703427-19703547 33 1.62e-04 TGCCAATATT GGCCAATA ATCTGTCGTT chr3L:16811971-16812091 98 1.62e-04 CGAGCTTAGC GGCTAAGT CGGGCTCACA chr2R:22308065-22308185 109 1.93e-04 GCTTGGGGAA TGCCAATT TGAT chr2L:15389460-15389580 37 1.93e-04 ACAAATAAAC GGCCAAGT GTGTGCTGCG chr2R:12412917-12413037 26 1.93e-04 TGTCGCTTTT GGCCAAGT CAACAACGAA chr2L:14514468-14514588 76 1.93e-04 GCAGAAAATC TGCCAATT CAGATTGGCC chr3L:22179537-22179657 34 1.93e-04 TGTTGCCCGG GGCCAAGT GCTTTGGACT chr2R:22845899-22846019 54 1.93e-04 TAGCTGGCAT TGCCAATT TTTTGAACAT chr3R:8787567-8787687 105 2.44e-04 CAGTTCAAAA AGCCAAAT CACTTTCC chr3L:4408594-4408714 11 2.44e-04 ACGCGAACTC AGCCAAAT GTGTATCTGG chr3L:14157292-14157412 62 2.44e-04 CCCCTCCGCC AGCCAAAT GCAAATTCCA chrX:17761066-17761186 74 2.44e-04 CTTAAATGCA AGCTAATA AGCAGCGGAC chr3L:17485987-17486107 50 2.76e-04 CCAAAAGAGT AGCCAATA GATACGGCTG chr3R:30827704-30827824 41 2.91e-04 CTGGTGTTTG AGCCAAGT CGTACGCGAC chr3L:18253377-18253497 84 3.07e-04 GCTCACCATG CGCTAATT TGAGCAAATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCYAATT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14320220-14320340 1.7e-05 48_[+2]_64 chr2L:14507088-14507208 1.7e-05 77_[+2]_35 chr3R:14462995-14463115 1.7e-05 44_[+2]_68 chr3L:7949914-7950034 1.7e-05 55_[+2]_57 chr3R:11941238-11941358 1.7e-05 9_[+2]_103 chr3R:10068902-10069022 1.7e-05 13_[+2]_99 chrX:5563578-5563698 1.7e-05 2_[+2]_110 chr3R:20002063-20002183 1.7e-05 100_[+2]_12 chrX:7970929-7971049 1.7e-05 55_[+2]_57 chr3R:7970470-7970590 1.7e-05 60_[+2]_52 chrX:6030732-6030852 1.7e-05 54_[+2]_58 chrX:9993856-9993976 3.2e-05 16_[+2]_96 chr3R:19310204-19310324 3.2e-05 33_[+2]_79 chr3R:16113297-16113417 3.2e-05 47_[+2]_65 chr2L:15227551-15227671 3.2e-05 112_[+2] chr2L:8285628-8285748 3.2e-05 19_[+2]_93 chr3L:11631448-11631568 3.2e-05 81_[+2]_31 chr3R:9607253-9607373 3.2e-05 70_[+2]_42 chr2L:15387990-15388110 3.2e-05 31_[+2]_81 chrX:2964804-2964924 5e-05 53_[+2]_59 chr2R:20975349-20975469 5e-05 19_[+2]_93 chr3L:22161903-22162023 5e-05 58_[+2]_54 chr3R:17601983-17602103 5e-05 67_[+2]_45 chr3R:6922567-6922687 5e-05 75_[+2]_37 chr3R:9917067-9917187 5e-05 15_[+2]_97 chrX:19326201-19326321 5e-05 109_[+2]_3 chr2L:682545-682665 5e-05 45_[+2]_67 chrX:10818647-10818767 6.6e-05 49_[+2]_63 chr2L:657779-657899 6.6e-05 48_[+2]_64 chr2R:7110481-7110601 8.2e-05 78_[+2]_34 chr2L:702285-702405 0.00011 69_[+2]_43 chr3L:10551239-10551359 0.00011 100_[+2]_12 chr2L:604828-604948 0.00011 42_[+2]_70 chr2L:17769187-17769307 0.00011 52_[+2]_60 chrX:17804181-17804301 0.00011 45_[+2]_67 chrX:13241505-13241625 0.00016 108_[+2]_4 chr3L:19703427-19703547 0.00016 32_[+2]_80 chr3L:16811971-16812091 0.00016 97_[+2]_15 chr2R:22308065-22308185 0.00019 108_[+2]_4 chr2L:15389460-15389580 0.00019 36_[+2]_76 chr2R:12412917-12413037 0.00019 25_[+2]_87 chr2L:14514468-14514588 0.00019 75_[+2]_37 chr3L:22179537-22179657 0.00019 33_[+2]_79 chr2R:22845899-22846019 0.00019 53_[+2]_59 chr3R:8787567-8787687 0.00024 104_[+2]_8 chr3L:4408594-4408714 0.00024 10_[+2]_102 chr3L:14157292-14157412 0.00024 61_[+2]_51 chrX:17761066-17761186 0.00024 73_[+2]_39 chr3L:17485987-17486107 0.00028 49_[+2]_63 chr3R:30827704-30827824 0.00029 40_[+2]_72 chr3L:18253377-18253497 0.00031 83_[+2]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCYAATT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGCYAATT width=8 seqs=51 chr2R:14320220-14320340 ( 49) GGCTAATT 1 chr2L:14507088-14507208 ( 78) GGCTAATT 1 chr3R:14462995-14463115 ( 45) GGCTAATT 1 chr3L:7949914-7950034 ( 56) GGCTAATT 1 chr3R:11941238-11941358 ( 10) GGCTAATT 1 chr3R:10068902-10069022 ( 14) GGCTAATT 1 chrX:5563578-5563698 ( 3) GGCTAATT 1 chr3R:20002063-20002183 ( 101) GGCTAATT 1 chrX:7970929-7971049 ( 56) GGCTAATT 1 chr3R:7970470-7970590 ( 61) GGCTAATT 1 chrX:6030732-6030852 ( 55) GGCTAATT 1 chrX:9993856-9993976 ( 17) GGCCAATT 1 chr3R:19310204-19310324 ( 34) GGCCAATT 1 chr3R:16113297-16113417 ( 48) GGCCAATT 1 chr2L:15227551-15227671 ( 113) GGCCAATT 1 chr2L:8285628-8285748 ( 20) GGCCAATT 1 chr3L:11631448-11631568 ( 82) GGCCAATT 1 chr3R:9607253-9607373 ( 71) GGCCAATT 1 chr2L:15387990-15388110 ( 32) GGCCAATT 1 chrX:2964804-2964924 ( 54) AGCTAATT 1 chr2R:20975349-20975469 ( 20) AGCTAATT 1 chr3L:22161903-22162023 ( 59) AGCTAATT 1 chr3R:17601983-17602103 ( 68) AGCTAATT 1 chr3R:6922567-6922687 ( 76) AGCTAATT 1 chr3R:9917067-9917187 ( 16) AGCTAATT 1 chrX:19326201-19326321 ( 110) AGCTAATT 1 chr2L:682545-682665 ( 46) AGCTAATT 1 chrX:10818647-10818767 ( 50) AGCCAATT 1 chr2L:657779-657899 ( 49) AGCCAATT 1 chr2R:7110481-7110601 ( 79) GGCTAAAT 1 chr2L:702285-702405 ( 70) GGCCAAAT 1 chr3L:10551239-10551359 ( 101) GGCTAATA 1 chr2L:604828-604948 ( 43) GGCTAATA 1 chr2L:17769187-17769307 ( 53) GGCCAAAT 1 chrX:17804181-17804301 ( 46) GGCTAATA 1 chrX:13241505-13241625 ( 109) TGCTAATT 1 chr3L:19703427-19703547 ( 33) GGCCAATA 1 chr3L:16811971-16812091 ( 98) GGCTAAGT 1 chr2R:22308065-22308185 ( 109) TGCCAATT 1 chr2L:15389460-15389580 ( 37) GGCCAAGT 1 chr2R:12412917-12413037 ( 26) GGCCAAGT 1 chr2L:14514468-14514588 ( 76) TGCCAATT 1 chr3L:22179537-22179657 ( 34) GGCCAAGT 1 chr2R:22845899-22846019 ( 54) TGCCAATT 1 chr3R:8787567-8787687 ( 105) AGCCAAAT 1 chr3L:4408594-4408714 ( 11) AGCCAAAT 1 chr3L:14157292-14157412 ( 62) AGCCAAAT 1 chrX:17761066-17761186 ( 74) AGCTAATA 1 chr3L:17485987-17486107 ( 50) AGCCAATA 1 chr3R:30827704-30827824 ( 41) AGCCAAGT 1 chr3L:18253377-18253497 ( 84) CGCTAATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCYAATT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.62225 E= 3.5e-009 28 -359 127 -174 -1232 -1232 203 -1232 -1232 208 -1232 -1232 -1232 99 -1232 102 196 -1232 -1232 -1232 196 -1232 -1232 -1232 -113 -1232 -132 158 -113 -1232 -1232 175 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCYAATT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 3.5e-009 0.313725 0.019608 0.588235 0.078431 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.470588 0.000000 0.529412 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.117647 0.000000 0.098039 0.784314 0.117647 0.000000 0.000000 0.882353 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCYAATT MEME-2 regular expression -------------------------------------------------------------------------------- [GA]GC[TC]AATT -------------------------------------------------------------------------------- Time 14.81 secs. ******************************************************************************** ******************************************************************************** MOTIF AACYSGTT MEME-3 width = 8 sites = 40 llr = 346 E-value = 3.4e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif AACYSGTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A aa:11::: pos.-specific C ::a53::: probability G :::15a:: matrix T :::31:aa bits 2.1 * * 1.9 *** *** 1.7 *** *** 1.5 *** *** Relative 1.2 *** *** Entropy 1.0 *** *** (12.5 bits) 0.8 *** *** 0.6 *** *** 0.4 **** *** 0.2 ******** 0.0 -------- Multilevel AACCGGTT consensus TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACYSGTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14828719-14828839 23 1.52e-05 AGGCCTGTTA AACCGGTT CATTTGCATA chr3R:14917665-14917785 86 1.52e-05 AAGAGGATCC AACCGGTT TGCAAATGGT chr3L:3537081-3537201 37 1.52e-05 CTGCAACTGA AACCGGTT TTCCATTCAC chrX:6305503-6305623 91 1.52e-05 AATAGCTGGC AACCGGTT TGGTTCGGAT chr2R:15043921-15044041 42 1.52e-05 ATGTGCTGCA AACCGGTT GAACAACTGG chr2R:7261884-7262004 30 1.52e-05 TGCTTCCTTC AACCGGTT TGCCGATCCA chrX:3830959-3831079 48 1.52e-05 GCACGCGCCA AACCGGTT GACCAGCTGC chrX:19326201-19326321 1 1.52e-05 . AACCGGTT CCCTGCATAC chr2R:16576572-16576692 70 4.66e-05 CGCCCCGCGG AACTGGTT TCCCGACCCG chr2L:21070910-21071030 76 4.66e-05 TCTCATTAAA AACTGGTT ATGTTAATCG chr2R:11561537-11561657 50 4.66e-05 CTCGGACACG AACTGGTT GGACAGGCTC chrX:14173937-14174057 111 4.66e-05 AAATGAGCCA AACCCGTT TG chr3R:21648301-21648421 57 4.66e-05 TTGTTATCTT AACCCGTT TGTGGCCCCA chr2R:12785773-12785893 29 4.66e-05 ATCCCCATTA AACTGGTT TGGCAGCCAC chr3L:17625818-17625938 69 4.66e-05 TCCGAAATAA AACTGGTT TACGAGTGGA chr3L:14157292-14157412 84 4.66e-05 ATTCCAGTCG AACCCGTT CTCCGTCTCT chr3R:9607253-9607373 58 4.66e-05 CGTCAGCGTT AACCCGTT TGCCAGGCCA chr2L:16482393-16482513 67 4.66e-05 CGGCCAGTTC AACCCGTT CTTCACTGCA chr2R:12412917-12413037 58 6.29e-05 AAGCAAAAAA AACTCGTT CTGGCATGTT chr2R:7086168-7086288 71 6.29e-05 ATGAAATAAA AACTCGTT GCGAGAGGAG chr3L:2807535-2807655 96 6.29e-05 TTACACCAGA AACTCGTT TCGCTAATTG chr3R:15448759-15448879 55 6.29e-05 AGCGCGCCGA AACTCGTT TTGATATAAC chr3R:17051435-17051555 95 6.29e-05 AAAAGGCTGG AACTCGTT AAGGGGCAAA chr2L:702285-702405 6 1.11e-04 CTGAA AACCAGTT CAGTGTGTGT chr3R:24593893-24594013 47 1.11e-04 GGGTTGGGAA AACGGGTT TTCTTTTTTT chr3L:9007465-9007585 45 1.11e-04 GAGGCATAAA AACCAGTT CCTCCAGGCC chr3R:6832513-6832633 65 1.11e-04 CTGCGCGGAA AACCTGTT CTGTGTTTTC chr2L:5119160-5119280 60 1.11e-04 TCAATCCGAA AACCAGTT TCTCGACTGC chrX:9881945-9882065 5 1.11e-04 TGCA AACGGGTT TCAGTCGATT chr3R:20002063-20002183 72 1.11e-04 TAAACCAGTC AACGGGTT TTATTTCGGC chr2L:88657-88777 65 1.11e-04 GCTGCGGCCT AACCTGTT TTCTTCGATT chr2R:20632188-20632308 91 1.11e-04 TTATTTTCAA AACGGGTT TTTCGGCGGC chr3L:1514417-1514537 52 1.11e-04 GAGATCGCAG AACCTGTT GCCAACGTTC chr3R:11941238-11941358 52 1.78e-04 GAGGAGCGGA AACAGGTT TCGTCATCAT chr3L:17406498-17406618 22 1.78e-04 TGTTTTGTTG AACTTGTT AATCAGCGAA chr3L:3674599-3674719 75 1.78e-04 GGTCCGAGCC AACTTGTT TTGGCAAACA chr2L:14297625-14297745 67 1.78e-04 TAGCGGCAGG AACAGGTT CCAAAGTTTG chr2R:22845899-22846019 6 1.78e-04 TTGTA AACTAGTT TCGCAGCACA chr3L:17392888-17393008 107 1.94e-04 ACAAGCACTC AACACGTT ACTCCC chr2L:15385852-15385972 42 2.28e-04 GGCGAGTTTT AACGAGTT GAAAAAAATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACYSGTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14828719-14828839 1.5e-05 22_[+3]_90 chr3R:14917665-14917785 1.5e-05 85_[+3]_27 chr3L:3537081-3537201 1.5e-05 36_[+3]_76 chrX:6305503-6305623 1.5e-05 90_[+3]_22 chr2R:15043921-15044041 1.5e-05 41_[+3]_71 chr2R:7261884-7262004 1.5e-05 29_[+3]_83 chrX:3830959-3831079 1.5e-05 47_[+3]_65 chrX:19326201-19326321 1.5e-05 [+3]_112 chr2R:16576572-16576692 4.7e-05 69_[+3]_43 chr2L:21070910-21071030 4.7e-05 75_[+3]_37 chr2R:11561537-11561657 4.7e-05 49_[+3]_63 chrX:14173937-14174057 4.7e-05 110_[+3]_2 chr3R:21648301-21648421 4.7e-05 56_[+3]_56 chr2R:12785773-12785893 4.7e-05 28_[+3]_84 chr3L:17625818-17625938 4.7e-05 68_[+3]_44 chr3L:14157292-14157412 4.7e-05 83_[+3]_29 chr3R:9607253-9607373 4.7e-05 57_[+3]_55 chr2L:16482393-16482513 4.7e-05 66_[+3]_46 chr2R:12412917-12413037 6.3e-05 57_[+3]_55 chr2R:7086168-7086288 6.3e-05 70_[+3]_42 chr3L:2807535-2807655 6.3e-05 95_[+3]_17 chr3R:15448759-15448879 6.3e-05 54_[+3]_58 chr3R:17051435-17051555 6.3e-05 94_[+3]_18 chr2L:702285-702405 0.00011 5_[+3]_107 chr3R:24593893-24594013 0.00011 46_[+3]_66 chr3L:9007465-9007585 0.00011 44_[+3]_68 chr3R:6832513-6832633 0.00011 64_[+3]_48 chr2L:5119160-5119280 0.00011 59_[+3]_53 chrX:9881945-9882065 0.00011 4_[+3]_108 chr3R:20002063-20002183 0.00011 71_[+3]_41 chr2L:88657-88777 0.00011 64_[+3]_48 chr2R:20632188-20632308 0.00011 90_[+3]_22 chr3L:1514417-1514537 0.00011 51_[+3]_61 chr3R:11941238-11941358 0.00018 51_[+3]_61 chr3L:17406498-17406618 0.00018 21_[+3]_91 chr3L:3674599-3674719 0.00018 74_[+3]_38 chr2L:14297625-14297745 0.00018 66_[+3]_46 chr2R:22845899-22846019 0.00018 5_[+3]_107 chr3L:17392888-17393008 0.00019 106_[+3]_6 chr2L:15385852-15385972 0.00023 41_[+3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACYSGTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AACYSGTT width=8 seqs=40 chr2R:14828719-14828839 ( 23) AACCGGTT 1 chr3R:14917665-14917785 ( 86) AACCGGTT 1 chr3L:3537081-3537201 ( 37) AACCGGTT 1 chrX:6305503-6305623 ( 91) AACCGGTT 1 chr2R:15043921-15044041 ( 42) AACCGGTT 1 chr2R:7261884-7262004 ( 30) AACCGGTT 1 chrX:3830959-3831079 ( 48) AACCGGTT 1 chrX:19326201-19326321 ( 1) AACCGGTT 1 chr2R:16576572-16576692 ( 70) AACTGGTT 1 chr2L:21070910-21071030 ( 76) AACTGGTT 1 chr2R:11561537-11561657 ( 50) AACTGGTT 1 chrX:14173937-14174057 ( 111) AACCCGTT 1 chr3R:21648301-21648421 ( 57) AACCCGTT 1 chr2R:12785773-12785893 ( 29) AACTGGTT 1 chr3L:17625818-17625938 ( 69) AACTGGTT 1 chr3L:14157292-14157412 ( 84) AACCCGTT 1 chr3R:9607253-9607373 ( 58) AACCCGTT 1 chr2L:16482393-16482513 ( 67) AACCCGTT 1 chr2R:12412917-12413037 ( 58) AACTCGTT 1 chr2R:7086168-7086288 ( 71) AACTCGTT 1 chr3L:2807535-2807655 ( 96) AACTCGTT 1 chr3R:15448759-15448879 ( 55) AACTCGTT 1 chr3R:17051435-17051555 ( 95) AACTCGTT 1 chr2L:702285-702405 ( 6) AACCAGTT 1 chr3R:24593893-24594013 ( 47) AACGGGTT 1 chr3L:9007465-9007585 ( 45) AACCAGTT 1 chr3R:6832513-6832633 ( 65) AACCTGTT 1 chr2L:5119160-5119280 ( 60) AACCAGTT 1 chrX:9881945-9882065 ( 5) AACGGGTT 1 chr3R:20002063-20002183 ( 72) AACGGGTT 1 chr2L:88657-88777 ( 65) AACCTGTT 1 chr2R:20632188-20632308 ( 91) AACGGGTT 1 chr3L:1514417-1514537 ( 52) AACCTGTT 1 chr3R:11941238-11941358 ( 52) AACAGGTT 1 chr3L:17406498-17406618 ( 22) AACTTGTT 1 chr3L:3674599-3674719 ( 75) AACTTGTT 1 chr2L:14297625-14297745 ( 67) AACAGGTT 1 chr2R:22845899-22846019 ( 6) AACTAGTT 1 chr3L:17392888-17393008 ( 107) AACACGTT 1 chr2L:15385852-15385972 ( 42) AACGAGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACYSGTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9372 E= 3.4e-006 196 -1197 -1197 -1197 196 -1197 -1197 -1197 -1197 208 -1197 -1197 -178 101 -97 31 -104 22 96 -107 -1197 -1197 203 -1197 -1197 -1197 -1197 193 -1197 -1197 -1197 193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACYSGTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 3.4e-006 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.075000 0.475000 0.125000 0.325000 0.125000 0.275000 0.475000 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACYSGTT MEME-3 regular expression -------------------------------------------------------------------------------- AAC[CT][GC]GTT -------------------------------------------------------------------------------- Time 20.85 secs. ******************************************************************************** ******************************************************************************** MOTIF TKTKKKTK MEME-4 width = 8 sites = 81 llr = 580 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKTKKKTK MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::2:: probability G :5:533:6 matrix T a5a575a4 bits 2.1 1.9 * * * 1.7 * * * 1.5 * * * Relative 1.2 * * * Entropy 1.0 ***** ** (10.3 bits) 0.8 ***** ** 0.6 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTTTTTG consensus T GGG T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTKKKTK MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22308065-22308185 86 1.93e-05 ATCTTGACTT TGTTTTTG TTTCTGCTTG chr3R:19310204-19310324 61 1.93e-05 TCGCATGTTT TGTTTTTG CAGCCTGCAC chr2R:11414403-11414523 111 1.93e-05 TAAGTCAGTC TGTTTTTG GC chr3R:21648301-21648421 42 1.93e-05 AAATTTCGCC TGTTTTTG TTATCTTAAC chr3R:7970470-7970590 110 1.93e-05 AAATTTGAGA TGTTTTTG AAG chr2L:15385852-15385972 66 3.72e-05 AATCAACCAG TGTGTTTG TGTGTAGGAG chr2L:15387990-15388110 63 3.72e-05 GGTCCACTGT TGTGTTTG TCTGTGTGTG chr2L:13129989-13130109 73 7.85e-05 attttatttt tttttttg tatattttct chr3L:3337472-3337592 35 7.85e-05 CGCGTTCTCT TGTTTTTT ATAACCATCT chr3L:16935440-16935560 1 7.85e-05 . TTTTTTTG TCACGCACAA chr3R:25313856-25313976 66 7.85e-05 TTGAAGTTTT TTTTTTTG TAATTCAGTT chr3R:24593893-24594013 58 7.85e-05 ACGGGTTTTC TTTTTTTG GTCGAATGTt chr2R:19912361-19912481 73 7.85e-05 TTGACTGCTT TGTTTTTT GGCGAAAATT chr3L:18253377-18253497 32 7.85e-05 ATGTTGCGAG TGTTTTTT TTTTTTTTAG chr2R:5106865-5106985 58 7.85e-05 ataaacggtt ttTTTTTG TTTGGAATAA chr3L:22179537-22179657 5 7.85e-05 GACT TGTTTTTT TCCACCGCCT chr2L:2564910-2565030 1 1.17e-04 . TTTGTTTG GCACAGTGCA chr3R:30226271-30226391 70 1.17e-04 TATGCATGTG TGTGTTTT AGCGAGGGCG chr3L:17406498-17406618 10 1.17e-04 GGCTGCCAC TGTGTTTT GTTGAACTTG chrX:4440374-4440494 48 1.17e-04 CCCGTTTGGT TTTGTTTG TTTTTCGGTC chr3R:6832513-6832633 74 1.17e-04 AAACCTGTTC TGTGTTTT CGAGTGCTCT chrX:5718253-5718373 18 1.17e-04 GTGGATCGCA TTTGTTTG CCTGGCTAAT chr3L:6358195-6358315 59 1.35e-04 GCTTGGGGCG TGTTTGTG ATTGCAGCTT chr3L:2408252-2408372 111 2.09e-04 ATGGCCCGAC TGTTGTTG CT chrX:5245155-5245275 101 2.09e-04 CATTtgagtg tgtgtgtg tgcgtgtgag chr2R:10581027-10581147 69 2.09e-04 tttgtgtgtg tgtgtgtg CCCGTGGTGG chrX:10818647-10818767 29 2.09e-04 TCCATTCCTT TTTTTTTT TTCAGCCGCG chr2L:702285-702405 17 2.09e-04 ACCAGTTCAG TGTGTGTG CGTTTGTGCG chrX:4449974-4450094 105 2.09e-04 cgGAATCGCC TGTGTGTG TTCCCCCT chr3R:15454585-15454705 92 2.09e-04 tccttttctt tttttttt tcAACGAGCA chr3L:22161903-22162023 83 2.09e-04 GGAGTAGCAT TGTTGTTG TTCCTGTGCC chr2L:15227551-15227671 42 2.09e-04 TAGTCCTCTA TTTTTTTT AGTACAGCGC chr3R:13938219-13938339 26 2.09e-04 ATTTGCGCCC TTTTTTTT ACGGCCCCAA chr3R:13860315-13860435 80 2.09e-04 CATTTTTAAA TGTGTGTG CTGGCTGAGT chrX:12239833-12239953 110 2.09e-04 GATACGAAGA TTTTTTTT CTT chr3R:28026186-28026306 79 2.09e-04 TTAGTGACTG TGTGTGTG AGCCACTCTC chrX:4441088-4441208 23 2.09e-04 ATGCTGGTGG TGTTGTTG TTCTTGTTAA chr3R:16174633-16174753 99 2.09e-04 ATTGCAGGTG TGTGTGTG CTACTCAAAC chr3L:10551239-10551359 68 2.09e-04 tgtacatgtg tgtgtgtg tgAAACGAAA chrX:5735732-5735852 103 2.09e-04 GAGTCCAgtg tgtgtgtg tgttggtgcg chrX:5044871-5044991 17 2.09e-04 ttgatgttgt tgttgttg ctgttgttgt chr3L:14610925-14611045 38 2.09e-04 CCGCTCGGTG TGTTGTTG TTATTGCATT chr3R:29460530-29460650 39 2.63e-04 CAGCTGCGAt tgtggttg tgcttgggga chr3L:7949914-7950034 29 2.63e-04 GTATACGCCA TGTGTCTG CCGTCACAAG chr2R:20632188-20632308 6 2.63e-04 CCAAG TTTGTTTT ATTGCTAATT chr2R:16576572-16576692 17 3.01e-04 CTGTTCAGAA TTTTTGTG ACAATTCACT chrX:2919501-2919621 90 3.01e-04 ATGTGATCAG TGTTTGTT TATTGTTCCC chr3R:4884494-4884614 72 3.01e-04 TGATTGTTCT TGTTTGTT TATTTAATAT chr3L:10406513-10406633 59 3.01e-04 TTGATTGCAT TTTTTGTG TTCGTGCGAA chr2R:18347940-18348060 15 4.13e-04 TTGCCTCAAG TGTTTCTT CTCACTTCGC chrX:6305503-6305623 36 4.13e-04 ACTTGGCGCT TGTTTCTT GTTTTGCGCT chr2R:22845899-22846019 25 4.13e-04 CGCAGCACAA TTTTGTTG AAGCTGCTTA chr2L:17769187-17769307 43 4.13e-04 TTGGGGTCAC TTTTTCTG TCGGCCAAAT chrX:15091283-15091403 35 4.83e-04 CATTCCGTCG TGTGTCTT ACCCTGAGGC chr3L:763932-764052 101 4.83e-04 AAATGGACGA TTTGGTTG CATTCGGACC chrX:17917657-17917777 68 4.83e-04 GAATGTTGGC TTTGTCTG CCTGTTGACC chrX:5563578-5563698 53 4.83e-04 GCGGTCGGTT TGTGTCTT CGCTAATTAG chr2L:618613-618733 26 5.21e-04 CTCCCTTTCA TTTTTGTT CTTTTGTGAA chr2R:6970765-6970885 101 5.21e-04 CACTCGATTC TTTTTGTT GTTCTTGAAG chr3R:28996854-28996974 73 6.12e-04 CACTCAAATG TTTTGTTT ACCTATGCTA chr3L:14157292-14157412 104 6.12e-04 CCGTCTCTGA TTTTTCTT GGGGGGTTG chr2R:16827862-16827982 1 6.12e-04 . TTTTTCTT CGGTTTTTTA chr3R:25586585-25586705 77 6.12e-04 TGCATATGGC TGTGGGTG GAGGACGTGT chr3L:13182989-13183109 23 6.65e-04 ATGCTGGATC TGTGGCTG GAGATTGGGT chr2L:21024099-21024219 36 6.65e-04 TTTCGTCTTA TTTGGTTT TTGGCCAACA chr2R:17159176-17159296 74 6.65e-04 ttcgtttggc tttggttt caggttttgg chr3L:9007465-9007585 1 6.65e-04 . TTTGGTTT CGGTTTCATA chr3L:8044017-8044137 36 6.65e-04 AATGCATAAA TTTGGTTT CTGATTGCAA chr2L:682545-682665 113 6.65e-04 GGAGATGAAA TGTGGCTG chr2R:15237630-15237750 7 7.01e-04 GCGGTC Tgttggtt ggtcggttgg chr2L:14514468-14514588 33 7.01e-04 TGCATTGGCA TGTTGGTT GGCCGGCTGG chr3L:21188007-21188127 73 7.69e-04 AAGCCACCCT TTTTGCTG GAAAACGGAA chr3L:8703331-8703451 26 7.69e-04 TGTGCTTGCT TTTGGGTG GAGTTGATGA chr3L:19678351-19678471 43 7.69e-04 GAGCCCAGTT TTTTGCTG CCTTGCGAGT chr2R:24787742-24787862 88 7.69e-04 ACTCTGTAGA TGTGGGTT AATAAGGCTT chr3L:7610712-7610832 87 7.69e-04 TGATACCGGT TTTTGCTG TTACTTGCTA chrX:20238782-20238902 42 8.02e-04 ATGGTACCTG TTTGGCTG GCCTTTTGGT chr3R:30827704-30827824 19 8.02e-04 CTGTTGTGAA TGTGGCTT AAACCTGGTG chr3L:11520757-11520877 16 8.02e-04 CAATTTGATT TTTGGCTG ACTGTGATGC chr3L:12800339-12800459 53 8.57e-04 AAATTGGCTG TTTTGCTT GGGGGGCGCT chr3L:620072-620192 6 8.75e-04 TGGAA TTTGGCTT TCTCCTGTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTKKKTK MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22308065-22308185 1.9e-05 85_[+4]_27 chr3R:19310204-19310324 1.9e-05 60_[+4]_52 chr2R:11414403-11414523 1.9e-05 110_[+4]_2 chr3R:21648301-21648421 1.9e-05 41_[+4]_71 chr3R:7970470-7970590 1.9e-05 109_[+4]_3 chr2L:15385852-15385972 3.7e-05 65_[+4]_47 chr2L:15387990-15388110 3.7e-05 62_[+4]_50 chr2L:13129989-13130109 7.9e-05 72_[+4]_40 chr3L:3337472-3337592 7.9e-05 34_[+4]_78 chr3L:16935440-16935560 7.9e-05 [+4]_112 chr3R:25313856-25313976 7.9e-05 65_[+4]_47 chr3R:24593893-24594013 7.9e-05 57_[+4]_55 chr2R:19912361-19912481 7.9e-05 72_[+4]_40 chr3L:18253377-18253497 7.9e-05 31_[+4]_81 chr2R:5106865-5106985 7.9e-05 57_[+4]_55 chr3L:22179537-22179657 7.9e-05 4_[+4]_108 chr2L:2564910-2565030 0.00012 [+4]_112 chr3R:30226271-30226391 0.00012 69_[+4]_43 chr3L:17406498-17406618 0.00012 9_[+4]_103 chrX:4440374-4440494 0.00012 47_[+4]_65 chr3R:6832513-6832633 0.00012 73_[+4]_39 chrX:5718253-5718373 0.00012 17_[+4]_95 chr3L:6358195-6358315 0.00013 58_[+4]_54 chr3L:2408252-2408372 0.00021 110_[+4]_2 chrX:5245155-5245275 0.00021 100_[+4]_12 chr2R:10581027-10581147 0.00021 68_[+4]_44 chrX:10818647-10818767 0.00021 28_[+4]_84 chr2L:702285-702405 0.00021 16_[+4]_96 chrX:4449974-4450094 0.00021 104_[+4]_8 chr3R:15454585-15454705 0.00021 91_[+4]_21 chr3L:22161903-22162023 0.00021 82_[+4]_30 chr2L:15227551-15227671 0.00021 41_[+4]_71 chr3R:13938219-13938339 0.00021 25_[+4]_87 chr3R:13860315-13860435 0.00021 79_[+4]_33 chrX:12239833-12239953 0.00021 109_[+4]_3 chr3R:28026186-28026306 0.00021 78_[+4]_34 chrX:4441088-4441208 0.00021 22_[+4]_90 chr3R:16174633-16174753 0.00021 98_[+4]_14 chr3L:10551239-10551359 0.00021 67_[+4]_45 chrX:5735732-5735852 0.00021 102_[+4]_10 chrX:5044871-5044991 0.00021 16_[+4]_96 chr3L:14610925-14611045 0.00021 37_[+4]_75 chr3R:29460530-29460650 0.00026 38_[+4]_74 chr3L:7949914-7950034 0.00026 28_[+4]_84 chr2R:20632188-20632308 0.00026 5_[+4]_107 chr2R:16576572-16576692 0.0003 16_[+4]_96 chrX:2919501-2919621 0.0003 89_[+4]_23 chr3R:4884494-4884614 0.0003 71_[+4]_41 chr3L:10406513-10406633 0.0003 58_[+4]_54 chr2R:18347940-18348060 0.00041 14_[+4]_98 chrX:6305503-6305623 0.00041 35_[+4]_77 chr2R:22845899-22846019 0.00041 24_[+4]_88 chr2L:17769187-17769307 0.00041 42_[+4]_70 chrX:15091283-15091403 0.00048 34_[+4]_78 chr3L:763932-764052 0.00048 100_[+4]_12 chrX:17917657-17917777 0.00048 67_[+4]_45 chrX:5563578-5563698 0.00048 52_[+4]_60 chr2L:618613-618733 0.00052 25_[+4]_87 chr2R:6970765-6970885 0.00052 100_[+4]_12 chr3R:28996854-28996974 0.00061 72_[+4]_40 chr3L:14157292-14157412 0.00061 103_[+4]_9 chr2R:16827862-16827982 0.00061 [+4]_112 chr3R:25586585-25586705 0.00061 76_[+4]_36 chr3L:13182989-13183109 0.00067 22_[+4]_90 chr2L:21024099-21024219 0.00067 35_[+4]_77 chr2R:17159176-17159296 0.00067 73_[+4]_39 chr3L:9007465-9007585 0.00067 [+4]_112 chr3L:8044017-8044137 0.00067 35_[+4]_77 chr2L:682545-682665 0.00067 112_[+4] chr2R:15237630-15237750 0.0007 6_[+4]_106 chr2L:14514468-14514588 0.0007 32_[+4]_80 chr3L:21188007-21188127 0.00077 72_[+4]_40 chr3L:8703331-8703451 0.00077 25_[+4]_87 chr3L:19678351-19678471 0.00077 42_[+4]_70 chr2R:24787742-24787862 0.00077 87_[+4]_25 chr3L:7610712-7610832 0.00077 86_[+4]_26 chrX:20238782-20238902 0.0008 41_[+4]_71 chr3R:30827704-30827824 0.0008 18_[+4]_94 chr3L:11520757-11520877 0.0008 15_[+4]_97 chr3L:12800339-12800459 0.00086 52_[+4]_60 chr3L:620072-620192 0.00087 5_[+4]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTKKKTK MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKTKKKTK width=8 seqs=81 chr2R:22308065-22308185 ( 86) TGTTTTTG 1 chr3R:19310204-19310324 ( 61) TGTTTTTG 1 chr2R:11414403-11414523 ( 111) TGTTTTTG 1 chr3R:21648301-21648421 ( 42) TGTTTTTG 1 chr3R:7970470-7970590 ( 110) TGTTTTTG 1 chr2L:15385852-15385972 ( 66) TGTGTTTG 1 chr2L:15387990-15388110 ( 63) TGTGTTTG 1 chr2L:13129989-13130109 ( 73) TTTTTTTG 1 chr3L:3337472-3337592 ( 35) TGTTTTTT 1 chr3L:16935440-16935560 ( 1) TTTTTTTG 1 chr3R:25313856-25313976 ( 66) TTTTTTTG 1 chr3R:24593893-24594013 ( 58) TTTTTTTG 1 chr2R:19912361-19912481 ( 73) TGTTTTTT 1 chr3L:18253377-18253497 ( 32) TGTTTTTT 1 chr2R:5106865-5106985 ( 58) TTTTTTTG 1 chr3L:22179537-22179657 ( 5) TGTTTTTT 1 chr2L:2564910-2565030 ( 1) TTTGTTTG 1 chr3R:30226271-30226391 ( 70) TGTGTTTT 1 chr3L:17406498-17406618 ( 10) TGTGTTTT 1 chrX:4440374-4440494 ( 48) TTTGTTTG 1 chr3R:6832513-6832633 ( 74) TGTGTTTT 1 chrX:5718253-5718373 ( 18) TTTGTTTG 1 chr3L:6358195-6358315 ( 59) TGTTTGTG 1 chr3L:2408252-2408372 ( 111) TGTTGTTG 1 chrX:5245155-5245275 ( 101) TGTGTGTG 1 chr2R:10581027-10581147 ( 69) TGTGTGTG 1 chrX:10818647-10818767 ( 29) TTTTTTTT 1 chr2L:702285-702405 ( 17) TGTGTGTG 1 chrX:4449974-4450094 ( 105) TGTGTGTG 1 chr3R:15454585-15454705 ( 92) TTTTTTTT 1 chr3L:22161903-22162023 ( 83) TGTTGTTG 1 chr2L:15227551-15227671 ( 42) TTTTTTTT 1 chr3R:13938219-13938339 ( 26) TTTTTTTT 1 chr3R:13860315-13860435 ( 80) TGTGTGTG 1 chrX:12239833-12239953 ( 110) TTTTTTTT 1 chr3R:28026186-28026306 ( 79) TGTGTGTG 1 chrX:4441088-4441208 ( 23) TGTTGTTG 1 chr3R:16174633-16174753 ( 99) TGTGTGTG 1 chr3L:10551239-10551359 ( 68) TGTGTGTG 1 chrX:5735732-5735852 ( 103) TGTGTGTG 1 chrX:5044871-5044991 ( 17) TGTTGTTG 1 chr3L:14610925-14611045 ( 38) TGTTGTTG 1 chr3R:29460530-29460650 ( 39) TGTGGTTG 1 chr3L:7949914-7950034 ( 29) TGTGTCTG 1 chr2R:20632188-20632308 ( 6) TTTGTTTT 1 chr2R:16576572-16576692 ( 17) TTTTTGTG 1 chrX:2919501-2919621 ( 90) TGTTTGTT 1 chr3R:4884494-4884614 ( 72) TGTTTGTT 1 chr3L:10406513-10406633 ( 59) TTTTTGTG 1 chr2R:18347940-18348060 ( 15) TGTTTCTT 1 chrX:6305503-6305623 ( 36) TGTTTCTT 1 chr2R:22845899-22846019 ( 25) TTTTGTTG 1 chr2L:17769187-17769307 ( 43) TTTTTCTG 1 chrX:15091283-15091403 ( 35) TGTGTCTT 1 chr3L:763932-764052 ( 101) TTTGGTTG 1 chrX:17917657-17917777 ( 68) TTTGTCTG 1 chrX:5563578-5563698 ( 53) TGTGTCTT 1 chr2L:618613-618733 ( 26) TTTTTGTT 1 chr2R:6970765-6970885 ( 101) TTTTTGTT 1 chr3R:28996854-28996974 ( 73) TTTTGTTT 1 chr3L:14157292-14157412 ( 104) TTTTTCTT 1 chr2R:16827862-16827982 ( 1) TTTTTCTT 1 chr3R:25586585-25586705 ( 77) TGTGGGTG 1 chr3L:13182989-13183109 ( 23) TGTGGCTG 1 chr2L:21024099-21024219 ( 36) TTTGGTTT 1 chr2R:17159176-17159296 ( 74) TTTGGTTT 1 chr3L:9007465-9007585 ( 1) TTTGGTTT 1 chr3L:8044017-8044137 ( 36) TTTGGTTT 1 chr2L:682545-682665 ( 113) TGTGGCTG 1 chr2R:15237630-15237750 ( 7) TGTTGGTT 1 chr2L:14514468-14514588 ( 33) TGTTGGTT 1 chr3L:21188007-21188127 ( 73) TTTTGCTG 1 chr3L:8703331-8703451 ( 26) TTTGGGTG 1 chr3L:19678351-19678471 ( 43) TTTTGCTG 1 chr2R:24787742-24787862 ( 88) TGTGGGTT 1 chr3L:7610712-7610832 ( 87) TTTTGCTG 1 chrX:20238782-20238902 ( 42) TTTGGCTG 1 chr3R:30827704-30827824 ( 19) TGTGGCTT 1 chr3L:11520757-11520877 ( 16) TTTGGCTG 1 chr3L:12800339-12800459 ( 53) TTTTGCTT 1 chr3L:620072-620192 ( 6) TTTGGCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTKKKTK MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.9265 E= 1.5e+003 -1298 -1298 -1298 193 -1298 -1298 115 80 -1298 -1298 -1298 193 -1298 -1298 90 105 -1298 -1298 50 132 -1298 -1 9 95 -1298 -1298 -1298 193 -1298 -1298 125 68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTKKKTK MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 81 E= 1.5e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.543210 0.456790 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.456790 0.543210 0.000000 0.000000 0.345679 0.654321 0.000000 0.234568 0.259259 0.506173 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.580247 0.419753 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTKKKTK MEME-4 regular expression -------------------------------------------------------------------------------- T[GT]T[TG][TG][TGC]T[GT] -------------------------------------------------------------------------------- Time 26.81 secs. ******************************************************************************** ******************************************************************************** MOTIF MAAANAAA MEME-5 width = 8 sites = 52 llr = 411 E-value = 2.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAAANAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 57aa3aaa pos.-specific C 33::3::: probability G 2:::2::: matrix T ::::3::: bits 2.1 1.9 ** *** 1.7 ** *** 1.5 ** *** Relative 1.2 ** *** Entropy 1.0 *** *** (11.4 bits) 0.8 *** *** 0.6 *** *** 0.4 **** *** 0.2 **** *** 0.0 -------- Multilevel AAAAAAAA consensus CC C sequence G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAANAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6990545-6990665 97 3.76e-05 ATCTCAAGCA AAAACAAA CCTGATCGCG chr3L:17493706-17493826 53 3.76e-05 CGTCGCCAAA AAAAAAAA TTGAGAGAGT chr3R:24299340-24299460 48 3.76e-05 aaacaaaaca aaaaaaaa agcacacaca chr2L:8855013-8855133 62 3.76e-05 GGTAGCAGCA AAAAAAAA AGAAGAGAAT chr3R:30226271-30226391 113 3.76e-05 AATTTCAGCA AAAAAAAA chrX:4448612-4448732 11 3.76e-05 GTGTGTGGCA AAAACAAA CAACGACGCT chr3R:9917067-9917187 86 3.76e-05 Caaaaaatac aaaaaaaa taaaataaat chr3L:8044017-8044137 108 3.76e-05 TGAGACCCaa aaaaaaaa aagta chr2L:604828-604948 99 3.76e-05 AGCTCATGCG AAAACAAA CTGGGCAAAA chr3R:5284431-5284551 44 5.75e-05 AGGGTACTTA AAAATAAA CTGAAACCGG chr2L:18604043-18604163 25 5.75e-05 AAAGTGTGAT AAAATAAA TGATTTAATG chr3L:13474840-13474960 84 5.75e-05 CAGCGCGCCA AAAATAAA AACTCACTCA chr3L:17625818-17625938 17 5.75e-05 TTTTCGCTCG AAAATAAA AAACGTTTAC chr2L:15385852-15385972 105 5.75e-05 AAATGAATTT AAAATAAA TAAAAGCT chr2L:5428091-5428211 107 5.75e-05 AATACACCAG AAAATAAA CTCTGC chr3R:19286070-19286190 93 1.10e-04 ACGCAACTGC AAAAGAAA CAACCGGCCA chr2R:20564595-20564715 21 1.10e-04 AAGTGTGTGG CAAAAAAA GAACCGCAGA chr2R:18347940-18348060 45 1.10e-04 AATGCAAAGG AAAAGAAA AATGTTGCAG chr3L:3537081-3537201 95 1.10e-04 GGGCAGCAGG CAAACAAA ATGTTTGCAG chr3L:7949914-7950034 90 1.10e-04 TACAAAGAAG CAAACAAA TTAGAGGGAG chrX:5735732-5735852 34 1.10e-04 AATGCGAGAA AAAAGAAA TATAAGTGAG chr3R:17051435-17051555 109 1.10e-04 CGTTAAGGGG CAAACAAA TGCC chr2L:7355751-7355871 18 1.45e-04 CAATCGGTCC ACAAAAAA TGAGCCGGAG chr3L:11021814-11021934 79 1.45e-04 CAGGGGCAGG ACAACAAA GCATCCTGCA chrX:6734689-6734809 113 1.45e-04 GGCAAGGGGA ACAAAAAA chr3L:1452933-1453053 28 1.45e-04 CTGCGGCGAG ACAACAAA ATCATTTTGC chr2L:14297625-14297745 28 1.45e-04 TTGGCTTAGC ACAACAAA TAATGATTCA chr3R:13938595-13938715 56 1.45e-04 ATTTAAATAT ACAAAAAA GGGAACctca chr2R:16840710-16840830 76 1.99e-04 AACAAAGGCC GAAACAAA CGGACAAAAA chr2R:22308065-22308185 48 1.99e-04 TAAGAGCTCC CAAATAAA TATCCCCTTT chr2L:15389460-15389580 28 1.99e-04 TATATATACA CAAATAAA CGGCCAAGTG chrX:2919501-2919621 60 1.99e-04 ATCGAAACAG GAAAAAAA CCAACCAGCG chr3R:15454585-15454705 1 1.99e-04 . GAAACAAA CAGGCTCTGC chrX:14173937-14174057 82 1.99e-04 TGCGTGGATG GAAAAAAA TATAATATCG chr3L:10406513-10406633 108 1.99e-04 CCAAGGGGTT GAAACAAA GGACT chr3L:16935440-16935560 15 2.17e-04 TTTGTCACGC ACAATAAA TAGGGTCTGG chr2R:20974870-20974990 80 2.36e-04 ATCCCAAACC GAAATAAA GAGCCTACGT chr2R:7086168-7086288 63 2.36e-04 GCTGAAAAAT GAAATAAA AACTCGTTGC chr3R:21648301-21648421 100 2.36e-04 GCATTGCAAT GAAATAAA TGAAGTTAAG chrX:21071206-21071326 104 2.53e-04 CAAACTGAAG CAAAGAAA TACATAATT chr3R:20002063-20002183 51 2.53e-04 CTTTTATCAA CAAAGAAA AGCTAAACCA chr3L:12800339-12800459 97 3.01e-04 TCAACTAACA ACAAGAAA GGAAAACATT chr3L:4408594-4408714 66 3.01e-04 TCGATCGTGG CCAACAAA TCTGGTCGCC chr2R:9493354-9493474 20 3.01e-04 TTGTTTCCCC CCAAAAAA GGCCAGACCA chr2R:16827862-16827982 47 3.01e-04 ACAAATCGGC CCAAAAAA CAGGAAAAGG chr3L:9007465-9007585 100 3.19e-04 AACTTCTTGT GAAAGAAA GAAGGTTTCT chr3L:22377618-22377738 51 3.68e-04 CACAGCACAC GCAAAAAA TCGCAGCGCA chrX:10818647-10818767 105 3.68e-04 CCAGCAATTT GCAACAAA AGTGCAAC chr2R:12412917-12413037 50 3.68e-04 CGAAAGCAAA GCAAAAAA AACTCGTTCT chr2R:7261884-7262004 56 3.68e-04 CAGCCGCTGC CCAATAAA TTCAAGTTAA chr3R:25313856-25313976 27 4.01e-04 TGGGTATGGG CCAAGAAA TTCCTTATCG chrX:17804181-17804301 105 4.01e-04 AACGAGATCC CCAAGAAA CGGCATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAANAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6990545-6990665 3.8e-05 96_[+5]_16 chr3L:17493706-17493826 3.8e-05 52_[+5]_60 chr3R:24299340-24299460 3.8e-05 47_[+5]_65 chr2L:8855013-8855133 3.8e-05 61_[+5]_51 chr3R:30226271-30226391 3.8e-05 112_[+5] chrX:4448612-4448732 3.8e-05 10_[+5]_102 chr3R:9917067-9917187 3.8e-05 85_[+5]_27 chr3L:8044017-8044137 3.8e-05 107_[+5]_5 chr2L:604828-604948 3.8e-05 98_[+5]_14 chr3R:5284431-5284551 5.8e-05 43_[+5]_69 chr2L:18604043-18604163 5.8e-05 24_[+5]_88 chr3L:13474840-13474960 5.8e-05 83_[+5]_29 chr3L:17625818-17625938 5.8e-05 16_[+5]_96 chr2L:15385852-15385972 5.8e-05 104_[+5]_8 chr2L:5428091-5428211 5.8e-05 106_[+5]_6 chr3R:19286070-19286190 0.00011 92_[+5]_20 chr2R:20564595-20564715 0.00011 20_[+5]_92 chr2R:18347940-18348060 0.00011 44_[+5]_68 chr3L:3537081-3537201 0.00011 94_[+5]_18 chr3L:7949914-7950034 0.00011 89_[+5]_23 chrX:5735732-5735852 0.00011 33_[+5]_79 chr3R:17051435-17051555 0.00011 108_[+5]_4 chr2L:7355751-7355871 0.00014 17_[+5]_95 chr3L:11021814-11021934 0.00014 78_[+5]_34 chrX:6734689-6734809 0.00014 112_[+5] chr3L:1452933-1453053 0.00014 27_[+5]_85 chr2L:14297625-14297745 0.00014 27_[+5]_85 chr3R:13938595-13938715 0.00014 55_[+5]_57 chr2R:16840710-16840830 0.0002 75_[+5]_37 chr2R:22308065-22308185 0.0002 47_[+5]_65 chr2L:15389460-15389580 0.0002 27_[+5]_85 chrX:2919501-2919621 0.0002 59_[+5]_53 chr3R:15454585-15454705 0.0002 [+5]_112 chrX:14173937-14174057 0.0002 81_[+5]_31 chr3L:10406513-10406633 0.0002 107_[+5]_5 chr3L:16935440-16935560 0.00022 14_[+5]_98 chr2R:20974870-20974990 0.00024 79_[+5]_33 chr2R:7086168-7086288 0.00024 62_[+5]_50 chr3R:21648301-21648421 0.00024 99_[+5]_13 chrX:21071206-21071326 0.00025 103_[+5]_9 chr3R:20002063-20002183 0.00025 50_[+5]_62 chr3L:12800339-12800459 0.0003 96_[+5]_16 chr3L:4408594-4408714 0.0003 65_[+5]_47 chr2R:9493354-9493474 0.0003 19_[+5]_93 chr2R:16827862-16827982 0.0003 46_[+5]_66 chr3L:9007465-9007585 0.00032 99_[+5]_13 chr3L:22377618-22377738 0.00037 50_[+5]_62 chrX:10818647-10818767 0.00037 104_[+5]_8 chr2R:12412917-12413037 0.00037 49_[+5]_63 chr2R:7261884-7262004 0.00037 55_[+5]_57 chr3R:25313856-25313976 0.0004 26_[+5]_86 chrX:17804181-17804301 0.0004 104_[+5]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAANAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAAANAAA width=8 seqs=52 chrX:6990545-6990665 ( 97) AAAACAAA 1 chr3L:17493706-17493826 ( 53) AAAAAAAA 1 chr3R:24299340-24299460 ( 48) AAAAAAAA 1 chr2L:8855013-8855133 ( 62) AAAAAAAA 1 chr3R:30226271-30226391 ( 113) AAAAAAAA 1 chrX:4448612-4448732 ( 11) AAAACAAA 1 chr3R:9917067-9917187 ( 86) AAAAAAAA 1 chr3L:8044017-8044137 ( 108) AAAAAAAA 1 chr2L:604828-604948 ( 99) AAAACAAA 1 chr3R:5284431-5284551 ( 44) AAAATAAA 1 chr2L:18604043-18604163 ( 25) AAAATAAA 1 chr3L:13474840-13474960 ( 84) AAAATAAA 1 chr3L:17625818-17625938 ( 17) AAAATAAA 1 chr2L:15385852-15385972 ( 105) AAAATAAA 1 chr2L:5428091-5428211 ( 107) AAAATAAA 1 chr3R:19286070-19286190 ( 93) AAAAGAAA 1 chr2R:20564595-20564715 ( 21) CAAAAAAA 1 chr2R:18347940-18348060 ( 45) AAAAGAAA 1 chr3L:3537081-3537201 ( 95) CAAACAAA 1 chr3L:7949914-7950034 ( 90) CAAACAAA 1 chrX:5735732-5735852 ( 34) AAAAGAAA 1 chr3R:17051435-17051555 ( 109) CAAACAAA 1 chr2L:7355751-7355871 ( 18) ACAAAAAA 1 chr3L:11021814-11021934 ( 79) ACAACAAA 1 chrX:6734689-6734809 ( 113) ACAAAAAA 1 chr3L:1452933-1453053 ( 28) ACAACAAA 1 chr2L:14297625-14297745 ( 28) ACAACAAA 1 chr3R:13938595-13938715 ( 56) ACAAAAAA 1 chr2R:16840710-16840830 ( 76) GAAACAAA 1 chr2R:22308065-22308185 ( 48) CAAATAAA 1 chr2L:15389460-15389580 ( 28) CAAATAAA 1 chrX:2919501-2919621 ( 60) GAAAAAAA 1 chr3R:15454585-15454705 ( 1) GAAACAAA 1 chrX:14173937-14174057 ( 82) GAAAAAAA 1 chr3L:10406513-10406633 ( 108) GAAACAAA 1 chr3L:16935440-16935560 ( 15) ACAATAAA 1 chr2R:20974870-20974990 ( 80) GAAATAAA 1 chr2R:7086168-7086288 ( 63) GAAATAAA 1 chr3R:21648301-21648421 ( 100) GAAATAAA 1 chrX:21071206-21071326 ( 104) CAAAGAAA 1 chr3R:20002063-20002183 ( 51) CAAAGAAA 1 chr3L:12800339-12800459 ( 97) ACAAGAAA 1 chr3L:4408594-4408714 ( 66) CCAACAAA 1 chr2R:9493354-9493474 ( 20) CCAAAAAA 1 chr2R:16827862-16827982 ( 47) CCAAAAAA 1 chr3L:9007465-9007585 ( 100) GAAAGAAA 1 chr3L:22377618-22377738 ( 51) GCAAAAAA 1 chrX:10818647-10818767 ( 105) GCAACAAA 1 chr2R:12412917-12413037 ( 50) GCAAAAAA 1 chr2R:7261884-7262004 ( 56) CCAATAAA 1 chr3R:25313856-25313976 ( 27) CCAAGAAA 1 chrX:17804181-17804301 ( 105) CCAAGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAANAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7147 E= 2.0e-001 96 19 -8 -1234 139 47 -1234 -1234 196 -1234 -1234 -1234 196 -1234 -1234 -1234 26 19 -50 -7 196 -1234 -1234 -1234 196 -1234 -1234 -1234 196 -1234 -1234 -1234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAANAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 2.0e-001 0.500000 0.269231 0.230769 0.000000 0.673077 0.326923 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.307692 0.269231 0.173077 0.250000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAANAAA MEME-5 regular expression -------------------------------------------------------------------------------- [ACG][AC]AA[ACT]AAA -------------------------------------------------------------------------------- Time 32.62 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6030732-6030852 3.48e-02 54_[+2(1.68e-05)]_58 chrX:17761066-17761186 2.60e-01 120 chr3L:14610925-14611045 2.23e-01 120 chr3L:1514417-1514537 2.04e-03 90_[+1(1.78e-05)]_22 chr3R:17051435-17051555 4.77e-04 19_[+1(3.53e-05)]_67_[+3(6.29e-05)]_\ 18 chr2R:20632188-20632308 7.56e-05 18_[+1(1.78e-05)]_94 chr3R:7970470-7970590 1.60e-03 60_[+2(1.68e-05)]_41_[+4(1.93e-05)]_\ 3 chr3L:17392888-17393008 5.14e-03 63_[+1(3.53e-05)]_49 chr2L:5427348-5427468 2.84e-01 120 chr3R:15647646-15647766 3.71e-01 120 chr3L:11695960-11696080 3.22e-02 45_[+1(1.78e-05)]_67 chr2L:16482393-16482513 3.94e-03 66_[+3(4.66e-05)]_46 chr2L:15387990-15388110 5.00e-04 31_[+2(3.20e-05)]_23_[+4(3.72e-05)]_\ 50 chr2L:5428091-5428211 8.12e-02 106_[+5(5.75e-05)]_6 chr3R:14388384-14388504 1.85e-01 120 chr3R:20002479-20002599 1.17e-01 101_[+1(5.21e-05)]_11 chr2L:88657-88777 1.10e-01 120 chr3R:9607253-9607373 1.63e-03 57_[+3(4.66e-05)]_5_[+2(3.20e-05)]_\ 42 chr3R:25586585-25586705 1.61e-01 120 chr3L:7610712-7610832 1.61e-01 120 chrX:17804181-17804301 2.69e-02 120 chrX:5044871-5044991 2.38e-01 120 chrX:5718253-5718373 3.97e-04 28_[+2(1.68e-05)]_84 chr2L:13552768-13552888 1.18e-03 36_[+2(1.68e-05)]_76 chr2L:13136126-13136246 2.95e-01 120 chr3L:11520757-11520877 3.01e-01 120 chr2R:16827862-16827982 1.26e-03 16_[+1(1.78e-05)]_96 chr3L:8840968-8841088 6.83e-03 21_[+1(1.78e-05)]_91 chr2L:17769187-17769307 1.23e-03 84_[+1(3.53e-05)]_28 chr3R:23164769-23164889 3.47e-02 94_[+2(4.98e-05)]_18 chrX:7970929-7971049 3.40e-03 55_[+2(1.68e-05)]_57 chr2R:24681853-24681973 8.47e-01 120 chr3R:20002063-20002183 7.95e-05 100_[+2(1.68e-05)]_12 chrX:9881945-9882065 3.23e-02 120 chr3L:14157292-14157412 5.08e-03 83_[+3(4.66e-05)]_29 chr2R:6769730-6769850 8.38e-01 120 chr2L:604828-604948 6.62e-03 98_[+5(3.76e-05)]_14 chr2L:19070174-19070294 9.97e-02 120 chr3R:19357964-19358084 1.03e-04 45_[+2(1.68e-05)]_67 chr2R:22845899-22846019 7.69e-04 120 chr2L:5119160-5119280 1.17e-01 120 chrX:21128010-21128130 6.36e-03 111_[+1(1.78e-05)]_1 chr2L:15385852-15385972 9.84e-04 65_[+4(3.72e-05)]_31_[+5(5.75e-05)]_\ 8 chrX:5735732-5735852 5.96e-04 56_[+1(1.78e-05)]_56 chr3R:13938595-13938715 1.30e-03 30_[+2(4.98e-05)]_82 chr2L:682545-682665 2.70e-02 45_[+2(4.98e-05)]_67 chr3R:22681478-22681598 9.94e-01 120 chr2R:9493354-9493474 6.44e-03 120 chrX:19326201-19326321 8.77e-04 [+3(1.52e-05)]_101_[+2(4.98e-05)]_3 chr3L:10551239-10551359 2.37e-02 120 chr3L:16811971-16812091 1.55e-01 120 chr2L:14297625-14297745 1.06e-02 120 chr3L:8044017-8044137 8.27e-05 69_[+1(1.78e-05)]_28_[+5(3.76e-05)]_\ 7 chr3R:9917067-9917187 1.89e-03 15_[+2(4.98e-05)]_62_[+5(3.76e-05)]_\ 1_[+5(5.75e-05)]_18 chr3L:12325109-12325229 1.61e-01 31_[+1(3.53e-05)]_81 chrX:13542234-13542354 1.46e-02 73_[+1(3.53e-05)]_2_[+1(5.21e-05)]_\ 29 chrX:3830959-3831079 1.25e-01 47_[+3(1.52e-05)]_65 chr3L:22179537-22179657 1.28e-03 4_[+4(7.85e-05)]_108 chr3L:11631448-11631568 1.01e-01 81_[+2(3.20e-05)]_31 chr3R:13883230-13883350 1.72e-01 120 chr3R:6922567-6922687 1.32e-01 75_[+2(4.98e-05)]_37 chr2R:22942230-22942350 8.55e-01 120 chr3L:17625818-17625938 4.51e-04 16_[+5(5.75e-05)]_44_[+3(4.66e-05)]_\ 44 chrX:13240510-13240630 7.36e-03 53_[+2(6.58e-05)]_59 chr2R:12785773-12785893 1.77e-01 28_[+3(4.66e-05)]_84 chr2L:14512011-14512131 9.97e-01 120 chr3L:3674599-3674719 3.53e-02 120 chrX:5563578-5563698 3.32e-03 2_[+2(1.68e-05)]_110 chr3R:16174633-16174753 6.11e-02 120 chr2R:7261884-7262004 1.10e-02 29_[+3(1.52e-05)]_83 chr3R:6832513-6832633 6.79e-04 42_[+1(3.53e-05)]_70 chr2L:8285628-8285748 5.99e-02 19_[+2(3.20e-05)]_93 chr2R:24868792-24868912 3.94e-01 120 chr3L:1452933-1453053 2.35e-01 120 chr3L:4408594-4408714 1.58e-03 84_[+1(5.21e-05)]_28 chr2L:14571768-14571888 7.25e-01 120 chr2R:24787742-24787862 1.33e-01 120 chr2R:23643187-23643307 8.19e-01 120 chr3R:21913718-21913838 9.83e-02 120 chr2R:5106865-5106985 3.63e-03 57_[+4(7.85e-05)]_55 chrX:4441088-4441208 1.27e-01 120 chr2R:12961419-12961539 3.85e-01 120 chr3R:15448759-15448879 4.69e-02 54_[+3(6.29e-05)]_58 chr3L:10379396-10379516 1.27e-01 86_[+1(7.02e-05)]_26 chr2R:15043921-15044041 3.56e-02 41_[+3(1.52e-05)]_71 chr3L:18253377-18253497 6.13e-03 31_[+4(7.85e-05)]_81 chr3R:10068902-10069022 9.21e-03 13_[+2(1.68e-05)]_99 chrX:4440374-4440494 1.78e-01 120 chr3L:17406498-17406618 3.97e-03 120 chr2L:18469819-18469939 4.42e-01 120 chr3L:10406513-10406633 4.03e-05 89_[+1(1.78e-05)]_23 chr3R:11941238-11941358 7.45e-03 9_[+2(1.68e-05)]_103 chr2L:1748576-1748696 7.13e-01 120 chr3R:13890039-13890159 5.02e-01 120 chr3R:21648301-21648421 2.79e-04 41_[+4(1.93e-05)]_7_[+3(4.66e-05)]_\ 56 chr3R:28026186-28026306 1.00e-02 18_[+1(3.53e-05)]_94 chr3L:12800339-12800459 1.30e-03 120 chrX:4448612-4448732 3.96e-02 10_[+5(3.76e-05)]_102 chr2L:9213768-9213888 6.15e-01 120 chrX:12239833-12239953 1.30e-01 120 chr3R:13860315-13860435 4.13e-02 120 chr2R:11414403-11414523 1.21e-01 110_[+4(1.93e-05)]_2 chr3R:17601983-17602103 1.48e-01 67_[+2(4.98e-05)]_45 chrX:14173937-14174057 3.59e-03 64_[+3(4.66e-05)]_38_[+3(4.66e-05)]_\ 2 chrX:6305503-6305623 1.26e-02 90_[+3(1.52e-05)]_22 chr3R:13938219-13938339 3.96e-03 120 chr3L:17485987-17486107 5.20e-02 120 chr2R:19912361-19912481 1.85e-02 72_[+4(7.85e-05)]_40 chr2R:22896729-22896849 2.80e-01 120 chr2L:12824345-12824465 1.98e-02 15_[+1(1.78e-05)]_97 chr3L:620072-620192 2.71e-02 120 chr2L:15227551-15227671 2.87e-02 112_[+2(3.20e-05)] chr3L:8643920-8644040 6.81e-01 120 chr2R:7241307-7241427 4.18e-01 120 chr3R:4873597-4873717 5.08e-01 120 chr3L:22161903-22162023 9.99e-03 58_[+2(4.98e-05)]_54 chr2R:11561537-11561657 5.83e-02 49_[+3(4.66e-05)]_63 chr3L:7949914-7950034 2.94e-04 55_[+2(1.68e-05)]_57 chr2L:12840952-12841072 7.50e-01 120 chr3L:3537081-3537201 1.22e-02 36_[+3(1.52e-05)]_76 chr3R:16113297-16113417 4.72e-02 47_[+2(3.20e-05)]_65 chr3L:9007465-9007585 2.08e-02 120 chr3L:2807535-2807655 4.61e-04 95_[+3(6.29e-05)]_4_[+1(5.21e-05)]_\ 5 chr2R:20975349-20975469 2.70e-02 19_[+2(4.98e-05)]_93 chr3R:30226271-30226391 6.96e-06 42_[+2(1.68e-05)]_61_[+5(3.76e-05)]_\ 1 chr2R:7086168-7086288 4.55e-02 70_[+3(6.29e-05)]_42 chr2R:24858552-24858672 8.05e-01 120 chr2L:8855013-8855133 1.80e-03 38_[+1(1.78e-05)]_14_[+5(3.76e-05)]_\ 52 chr3L:19703427-19703547 1.96e-02 120 chr2R:6970765-6970885 6.53e-02 70_[+1(5.21e-05)]_42 chr3R:4884494-4884614 6.13e-01 120 chr2L:21245849-21245969 3.37e-01 120 chr2R:18347940-18348060 6.37e-05 60_[+2(4.98e-05)]_52 chr3R:7950040-7950160 2.25e-01 120 chr2R:20564595-20564715 1.01e-01 120 chr2L:14514468-14514588 1.41e-02 120 chr3R:24299340-24299460 3.61e-02 36_[+5(3.76e-05)]_2_[+5(3.76e-05)]_\ 66 chr3L:13474840-13474960 1.91e-02 83_[+5(5.75e-05)]_29 chr2R:8323374-8323494 2.65e-02 84_[+1(1.78e-05)]_28 chr2L:623355-623475 1.00e+00 120 chr3L:6358195-6358315 5.78e-02 120 chr3L:12543426-12543546 6.12e-01 120 chr3R:24593893-24594013 3.04e-02 57_[+4(7.85e-05)]_55 chr2R:9030926-9031046 9.64e-01 120 chr3R:19333836-19333956 4.49e-01 120 chr3R:30827704-30827824 1.16e-01 120 chr2L:1432754-1432874 7.95e-02 93_[+1(1.78e-05)]_19 chr3R:14917665-14917785 8.19e-02 85_[+3(1.52e-05)]_27 chr3L:19678351-19678471 4.54e-01 120 chr2L:11966566-11966686 8.94e-01 120 chr2R:12412917-12413037 3.54e-04 51_[+5(3.76e-05)]_61 chr2L:18604043-18604163 2.29e-01 24_[+5(5.75e-05)]_88 chr3L:15196339-15196459 2.78e-02 48_[+1(3.53e-05)]_64 chr3R:5284431-5284551 1.15e-01 43_[+5(5.75e-05)]_69 chrX:19667906-19668026 1.00e+00 120 chr2R:20974870-20974990 2.08e-01 120 chr3R:25313856-25313976 9.09e-04 65_[+4(7.85e-05)]_47 chr2R:19913465-19913585 1.46e-01 120 chr2L:657779-657899 5.46e-02 48_[+2(6.58e-05)]_64 chr2R:7110481-7110601 1.06e-04 22_[+1(3.53e-05)]_48_[+2(8.23e-05)]_\ 34 chr2R:17159176-17159296 4.34e-01 120 chr3R:15454585-15454705 9.83e-03 120 chr2R:14828719-14828839 3.40e-02 22_[+3(1.52e-05)]_90 chr3L:17493706-17493826 2.74e-03 49_[+5(3.76e-05)]_63 chr2L:21248895-21249015 4.38e-01 120 chrX:6734689-6734809 1.34e-01 120 chr2L:7911777-7911897 8.72e-01 120 chr2L:618613-618733 2.42e-01 120 chrX:20238782-20238902 1.16e-01 120 chr3L:8703331-8703451 3.12e-01 120 chr2R:23722532-23722652 9.97e-01 120 chr2R:9005312-9005432 5.16e-01 120 chrX:4449974-4450094 6.41e-01 120 chr3R:5554998-5555118 1.39e-01 120 chrX:17917657-17917777 1.58e-03 14_[+1(3.53e-05)]_98 chrX:2919501-2919621 1.20e-02 120 chrX:2964804-2964924 6.70e-02 53_[+2(4.98e-05)]_59 chr2L:5263876-5263996 1.89e-01 120 chrX:21071206-21071326 4.05e-02 120 chr2R:15237630-15237750 6.06e-01 120 chr2R:8006975-8007095 7.89e-02 19_[+1(7.02e-05)]_93 chr2L:21024099-21024219 5.01e-02 120 chr2L:702285-702405 2.70e-03 120 chr2L:1473929-1474049 9.09e-01 120 chr3R:16501093-16501213 2.67e-01 120 chrX:5573602-5573722 1.07e-01 120 chrX:1320216-1320336 9.99e-01 120 chrX:10818647-10818767 7.38e-04 49_[+2(6.58e-05)]_63 chrX:18492071-18492191 4.48e-02 77_[+1(5.21e-05)]_35 chrX:11527202-11527322 8.96e-01 120 chrX:15676207-15676327 6.50e-02 120 chr3R:5208474-5208594 2.62e-01 120 chr2R:21140251-21140371 1.72e-01 120 chr3R:28996854-28996974 6.29e-03 88_[+1(5.21e-05)]_24 chr3R:19310204-19310324 6.29e-05 33_[+2(3.20e-05)]_19_[+4(1.93e-05)]_\ 52 chrX:6990545-6990665 5.75e-02 24_[+5(5.75e-05)]_64_[+5(3.76e-05)]_\ 16 chr2L:13554701-13554821 1.89e-01 120 chrX:12745236-12745356 2.02e-01 120 chr3R:14462995-14463115 3.05e-02 44_[+2(1.68e-05)]_68 chr2L:669656-669776 5.38e-01 120 chr2L:9155087-9155207 3.78e-01 120 chr3L:16935440-16935560 2.93e-02 [+4(7.85e-05)]_112 chr2L:15389460-15389580 2.90e-02 120 chr3R:30029347-30029467 4.96e-01 120 chr3R:19286070-19286190 1.64e-01 120 chr3L:11021814-11021934 1.79e-02 3_[+1(3.53e-05)]_109 chrX:13241505-13241625 2.38e-01 120 chrX:17774673-17774793 3.44e-01 120 chr3L:763932-764052 9.58e-03 37_[+1(3.53e-05)]_75 chr2R:22308065-22308185 1.17e-03 85_[+4(1.93e-05)]_27 chrX:5549502-5549622 1.35e-01 120 chr3R:8861152-8861272 2.33e-02 62_[+1(3.53e-05)]_50 chr2R:16181234-16181354 1.86e-01 120 chrX:19001704-19001824 4.87e-01 120 chr2R:10581027-10581147 7.49e-02 120 chr3L:18186920-18187040 6.99e-01 120 chr2L:11871293-11871413 4.08e-01 120 chr2L:21070910-21071030 1.29e-01 75_[+3(4.66e-05)]_37 chr3L:21188007-21188127 5.68e-01 120 chr2L:358369-358489 1.10e-01 120 chrX:1169577-1169697 9.54e-01 120 chrX:15091283-15091403 1.40e-01 120 chr3R:8787567-8787687 9.73e-04 14_[+1(1.78e-05)]_98 chr2R:23419557-23419677 7.06e-01 120 chr2L:14507088-14507208 1.09e-02 77_[+2(1.68e-05)]_35 chr3L:11314791-11314911 2.10e-02 41_[+1(1.78e-05)]_71 chr2R:18648557-18648677 5.42e-01 120 chr3L:11008041-11008161 8.20e-01 120 chr3L:3337472-3337592 1.58e-01 34_[+4(7.85e-05)]_78 chr2R:14320220-14320340 2.27e-02 24_[+2(1.68e-05)]_16_[+2(1.68e-05)]_\ 64 chr3R:29460530-29460650 7.16e-04 21_[+1(1.78e-05)]_91 chr3L:14649206-14649326 8.03e-01 120 chrX:5245155-5245275 8.01e-02 120 chr3L:2408252-2408372 1.23e-01 120 chr2R:16576572-16576692 3.75e-03 69_[+3(4.66e-05)]_43 chrX:9993856-9993976 7.08e-02 16_[+2(3.20e-05)]_96 chr3L:22377618-22377738 3.20e-01 120 chr2L:7355751-7355871 1.65e-01 120 chr3L:15763315-15763435 9.60e-01 120 chr2L:21763743-21763863 5.04e-02 90_[+1(1.78e-05)]_22 chr3L:13182989-13183109 2.28e-01 120 chr2L:2564910-2565030 2.39e-02 120 chr2L:13847816-13847936 1.36e-01 120 chr2R:16840710-16840830 2.16e-02 120 chr2L:13129989-13130109 1.58e-01 72_[+4(7.85e-05)]_40 chr2R:18208100-18208220 9.99e-01 120 chr2L:7282501-7282621 8.96e-01 120 chr3L:7707487-7707607 2.28e-01 120 chr3R:20890547-20890667 3.76e-01 120 chr2R:13552506-13552626 3.65e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************