******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Vsx1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:16994948-16995068 1.0000 120 chr2L:6073996-6074116 1.0000 120 chrX:3356435-3356555 1.0000 120 chrX:5618718-5618838 1.0000 120 chr3L:11015340-11015460 1.0000 120 chr2L:6236631-6236751 1.0000 120 chrX:5718115-5718235 1.0000 120 chr3R:25060584-25060704 1.0000 120 chrX:10762722-10762842 1.0000 120 chr2L:8480947-8481067 1.0000 120 chr3R:22396396-22396516 1.0000 120 chr2R:23727478-23727598 1.0000 120 chr2L:13552781-13552901 1.0000 120 chr3L:20410902-20411022 1.0000 120 chr2R:12597176-12597296 1.0000 120 chr2R:9268696-9268816 1.0000 120 chr3L:21201390-21201510 1.0000 120 chr2R:15917360-15917480 1.0000 120 chr3L:8452394-8452514 1.0000 120 chrX:16309902-16310022 1.0000 120 chrX:1120401-1120521 1.0000 120 chr3R:16501175-16501295 1.0000 120 chr3R:11172537-11172657 1.0000 120 chr2R:15833216-15833336 1.0000 120 chr2R:6963326-6963446 1.0000 120 chr3L:15704900-15705020 1.0000 120 chr2L:19096416-19096536 1.0000 120 chr3L:13065725-13065845 1.0000 120 chr3R:18398106-18398226 1.0000 120 chr3R:16071835-16071955 1.0000 120 chr3L:1580040-1580160 1.0000 120 chr3R:22330695-22330815 1.0000 120 chr2L:11961570-11961690 1.0000 120 chr3L:13877134-13877254 1.0000 120 chr3R:30345594-30345714 1.0000 120 chr2R:7655311-7655431 1.0000 120 chr3R:14630263-14630383 1.0000 120 chr3R:30431373-30431493 1.0000 120 chr2L:392670-392790 1.0000 120 chr2R:12926126-12926246 1.0000 120 chr2L:16494239-16494359 1.0000 120 chrX:899523-899643 1.0000 120 chr3L:12078701-12078821 1.0000 120 chr3R:15451608-15451728 1.0000 120 chr2R:24082711-24082831 1.0000 120 chr3R:24926946-24927066 1.0000 120 chr2R:16571464-16571584 1.0000 120 chr3R:16446935-16447055 1.0000 120 chr3R:25660045-25660165 1.0000 120 chrX:15496879-15496999 1.0000 120 chr2R:21721503-21721623 1.0000 120 chr3R:5517974-5518094 1.0000 120 chr3L:19225732-19225852 1.0000 120 chr3L:9209869-9209989 1.0000 120 chr2L:15339729-15339849 1.0000 120 chr3R:10514909-10515029 1.0000 120 chr2R:16721204-16721324 1.0000 120 chr3R:27681944-27682064 1.0000 120 chr3R:13231369-13231489 1.0000 120 chr3L:10088595-10088715 1.0000 120 chrX:2199502-2199622 1.0000 120 chr3L:18686606-18686726 1.0000 120 chrX:5289813-5289933 1.0000 120 chr2R:24328234-24328354 1.0000 120 chr3L:6804202-6804322 1.0000 120 chr2L:20869467-20869587 1.0000 120 chr3L:8078060-8078180 1.0000 120 chr3L:1200826-1200946 1.0000 120 chr3R:9127361-9127481 1.0000 120 chrM:5683-5803 1.0000 120 chrX:13741279-13741399 1.0000 120 chr2R:20123616-20123736 1.0000 120 chr3R:10098445-10098565 1.0000 120 chr2L:6224939-6225059 1.0000 120 chr3L:7938749-7938869 1.0000 120 chr2L:20772369-20772489 1.0000 120 chr2R:21389820-21389940 1.0000 120 chr3R:28899308-28899428 1.0000 120 chrX:1050728-1050848 1.0000 120 chr3R:24799664-24799784 1.0000 120 chrX:17698034-17698154 1.0000 120 chr2R:22845215-22845335 1.0000 120 chr2L:20322399-20322519 1.0000 120 chr2L:15609294-15609414 1.0000 120 chr2L:14374114-14374234 1.0000 120 chr3L:14347387-14347507 1.0000 120 chr3R:23460735-23460855 1.0000 120 chr3L:13228004-13228124 1.0000 120 chr3L:12459607-12459727 1.0000 120 chr3L:18634847-18634967 1.0000 120 chr3L:8029016-8029136 1.0000 120 chr3R:26892026-26892146 1.0000 120 chr3L:6342688-6342808 1.0000 120 chr3R:16237452-16237572 1.0000 120 chr2R:8636160-8636280 1.0000 120 chr3R:23139116-23139236 1.0000 120 chr2R:6770320-6770440 1.0000 120 chr3R:20975513-20975633 1.0000 120 chr3R:31306662-31306782 1.0000 120 chr2L:6178189-6178309 1.0000 120 chr2R:16882682-16882802 1.0000 120 chr3R:9028804-9028924 1.0000 120 chr3R:13913420-13913540 1.0000 120 chr3L:12079760-12079880 1.0000 120 chr2R:17080938-17081058 1.0000 120 chr3R:16284990-16285110 1.0000 120 chr3R:13734623-13734743 1.0000 120 chr3R:16273627-16273747 1.0000 120 chr2R:5682500-5682620 1.0000 120 chr2R:18372607-18372727 1.0000 120 chr2R:22237241-22237361 1.0000 120 chr3L:11547715-11547835 1.0000 120 chrX:580892-581012 1.0000 120 chr2R:13836721-13836841 1.0000 120 chr3R:21887065-21887185 1.0000 120 chr3L:3351128-3351248 1.0000 120 chr2R:14492645-14492765 1.0000 120 chr2R:12645505-12645625 1.0000 120 chrX:10740208-10740328 1.0000 120 chr3R:15090287-15090407 1.0000 120 chr3L:20837712-20837832 1.0000 120 chr2R:19395008-19395128 1.0000 120 chr2R:8058458-8058578 1.0000 120 chr3L:11690322-11690442 1.0000 120 chr3R:29111930-29112050 1.0000 120 chr3R:5306018-5306138 1.0000 120 chr2R:14001902-14002022 1.0000 120 chr3R:27699708-27699828 1.0000 120 chr3R:20006726-20006846 1.0000 120 chr2L:9121671-9121791 1.0000 120 chr2L:17741301-17741421 1.0000 120 chr3R:16246732-16246852 1.0000 120 chr3R:8711923-8712043 1.0000 120 chr3L:8300174-8300294 1.0000 120 chr2R:17442806-17442926 1.0000 120 chr3R:4804157-4804277 1.0000 120 chr2L:14673793-14673913 1.0000 120 chr3L:11717380-11717500 1.0000 120 chrX:17123359-17123479 1.0000 120 chr3L:2144329-2144449 1.0000 120 chr2L:12421939-12422059 1.0000 120 chr3L:19902680-19902800 1.0000 120 chr2L:4995910-4996030 1.0000 120 chr3L:20616388-20616508 1.0000 120 chr3L:6615351-6615471 1.0000 120 chr3L:10862492-10862612 1.0000 120 chr3L:20548602-20548722 1.0000 120 chr3R:16081339-16081459 1.0000 120 chrX:19294105-19294225 1.0000 120 chr3R:12405173-12405293 1.0000 120 chr2R:18349350-18349470 1.0000 120 chr2L:5084664-5084784 1.0000 120 chrX:16572709-16572829 1.0000 120 chr3L:4460498-4460618 1.0000 120 chr2R:11507499-11507619 1.0000 120 chrX:13735775-13735895 1.0000 120 chrX:22634188-22634308 1.0000 120 chr2L:14398657-14398777 1.0000 120 chr3L:19872595-19872715 1.0000 120 chr2R:12262176-12262296 1.0000 120 chr3L:7263492-7263612 1.0000 120 chr3R:18196770-18196890 1.0000 120 chrX:4702245-4702365 1.0000 120 chr3L:19777345-19777465 1.0000 120 chr3L:811703-811823 1.0000 120 chr3R:13222213-13222333 1.0000 120 chrX:3057978-3058098 1.0000 120 chr2L:11738871-11738991 1.0000 120 chr3L:2388803-2388923 1.0000 120 chr2R:18602473-18602593 1.0000 120 chr2L:3308162-3308282 1.0000 120 chr3L:15538949-15539069 1.0000 120 chr2L:15065705-15065825 1.0000 120 chr3L:12057763-12057883 1.0000 120 chrX:10370428-10370548 1.0000 120 chr2L:11229778-11229898 1.0000 120 chr2R:9107003-9107123 1.0000 120 chr3L:8073475-8073595 1.0000 120 chr3L:12392890-12393010 1.0000 120 chr3R:25550504-25550624 1.0000 120 chr2R:13918412-13918532 1.0000 120 chr2R:20137936-20138056 1.0000 120 chr3L:19340623-19340743 1.0000 120 chr3L:19258352-19258472 1.0000 120 chr2R:16019748-16019868 1.0000 120 chr2L:17472743-17472863 1.0000 120 chr3L:439618-439738 1.0000 120 chrX:15333661-15333781 1.0000 120 chr2R:9601992-9602112 1.0000 120 chr2R:22590702-22590822 1.0000 120 chr2R:10130280-10130400 1.0000 120 chr2L:12593545-12593665 1.0000 120 chrX:17587809-17587929 1.0000 120 chr2R:21611363-21611483 1.0000 120 chr3L:3787471-3787591 1.0000 120 chr2L:8104195-8104315 1.0000 120 chr3L:21935847-21935967 1.0000 120 chr2R:11341599-11341719 1.0000 120 chr3R:23939151-23939271 1.0000 120 chr3L:16957658-16957778 1.0000 120 chr3R:17948665-17948785 1.0000 120 chr3L:780851-780971 1.0000 120 chrX:8140911-8141031 1.0000 120 chr3R:10045511-10045631 1.0000 120 chr2R:21548526-21548646 1.0000 120 chr2R:17737119-17737239 1.0000 120 chr3L:10954014-10954134 1.0000 120 chr3L:15695325-15695445 1.0000 120 chr2L:8371082-8371202 1.0000 120 chrX:246242-246362 1.0000 120 chr3R:16272696-16272816 1.0000 120 chr2L:8570596-8570716 1.0000 120 chr3R:30062583-30062703 1.0000 120 chr2R:17086981-17087101 1.0000 120 chr2L:10754722-10754842 1.0000 120 chr3L:11378569-11378689 1.0000 120 chr3L:15692369-15692489 1.0000 120 chr3R:9591912-9592032 1.0000 120 chr3L:4319305-4319425 1.0000 120 chr3L:17616024-17616144 1.0000 120 chr3L:20387564-20387684 1.0000 120 chr3R:23161620-23161740 1.0000 120 chr3L:16291813-16291933 1.0000 120 chr2L:11807455-11807575 1.0000 120 chrX:18492130-18492250 1.0000 120 chr2L:20265041-20265161 1.0000 120 chr2R:19462901-19463021 1.0000 120 chr3L:446005-446125 1.0000 120 chr3R:23091704-23091824 1.0000 120 chr2R:20975303-20975423 1.0000 120 chr2L:7533963-7534083 1.0000 120 chr2L:3057963-3058083 1.0000 120 chr3L:11684966-11685086 1.0000 120 chr3R:5065715-5065835 1.0000 120 chr3L:17003960-17004080 1.0000 120 chr3L:15741076-15741196 1.0000 120 chr2L:7284364-7284484 1.0000 120 chr3R:10053667-10053787 1.0000 120 chr3R:27071317-27071437 1.0000 120 chr2R:9610483-9610603 1.0000 120 chr3L:16985756-16985876 1.0000 120 chr2L:20069807-20069927 1.0000 120 chr3R:26120013-26120133 1.0000 120 chr3L:1742336-1742456 1.0000 120 chr3L:16877210-16877330 1.0000 120 chr3R:4814831-4814951 1.0000 120 chr2R:21550003-21550123 1.0000 120 chr3R:16092193-16092313 1.0000 120 chr2R:8458094-8458214 1.0000 120 chr3L:9425803-9425923 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Vsx1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Vsx1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.291 C 0.212 G 0.211 T 0.286 Background letter frequencies (from file dataset with add-one prior applied): A 0.291 C 0.212 G 0.211 T 0.286 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCTAATTA MEME-1 width = 8 sites = 129 llr = 1012 E-value = 1.7e-078 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTAATTA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a9::7 pos.-specific C :92:1:1: probability G a:::::11 matrix T ::8::a82 bits 2.2 2.0 * 1.8 * * * 1.6 ** *** Relative 1.3 ** *** Entropy 1.1 ****** (11.3 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTAATTA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTAATTA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9425803-9425923 111 2.58e-05 CACTGTGGAT GCTAATTA AA chr3R:16092193-16092313 12 2.58e-05 ATGAGACCTG GCTAATTA ACATGGATAG chr2R:21550003-21550123 59 2.58e-05 CCATTTTGGA GCTAATTA CGGCGACAGG chr2R:20975303-20975423 67 2.58e-05 ATAAGAGATA GCTAATTA AGTCTTAGCC chr2R:17737119-17737239 67 2.58e-05 GGTAGCAGTG GCTAATTA ATTTATCACT chr2L:12593545-12593665 69 2.58e-05 ATCTTCTTTG GCTAATTA CAGACCAGCC chr3L:811703-811823 90 2.58e-05 TCCGGCTGGG GCTAATTA TAATTATGTA chr3L:19777345-19777465 37 2.58e-05 ATATTTTTAA GCTAATTA CCCGGCGCCT chr2R:12262176-12262296 34 2.58e-05 CTTTAGCTCG GCTAATTA TGAGATACGT chr3L:10862492-10862612 110 2.58e-05 GGACCGACAA GCTAATTA TAC chr2L:9121671-9121791 67 2.58e-05 AATTTACACA GCTAATTA AAAGTACCCC chr2R:12645505-12645625 94 2.58e-05 ACCCTTGATG GCTAATTA CGATCTAGGA chr3L:11547715-11547835 56 2.58e-05 CGTAAGTCGC GCTAATTA AGCAAATTAG chr3R:16273627-16273747 61 2.58e-05 GGCCATGGCA GCTAATTA GCCTAATTTT chr3R:13913420-13913540 15 2.58e-05 GGCTCGGATA GCTAATTA AGTTTTAACA chr2R:6770320-6770440 77 2.58e-05 CGCCGTCGAA GCTAATTA AACTCGCTTG chr3R:16237452-16237572 27 2.58e-05 AACGAAAGAG GCTAATTA AGCCAAAGGA chr3L:8029016-8029136 60 2.58e-05 TCTATTACAG GCTAATTA GCTAAGGAAG chr3L:13228004-13228124 72 2.58e-05 AGCGGTGAAG GCTAATTA GCTGTGGGCG chr3R:5517974-5518094 52 2.58e-05 GAACCGATAG GCTAATTA CCGCGATAGC chrX:15496879-15496999 70 2.58e-05 ATTTTTATCT GCTAATTA AACACAGACG chr3R:25660045-25660165 77 2.58e-05 CATTGAAATG GCTAATTA TGCAGTGCTA chrX:899523-899643 10 2.58e-05 AAATAAGCA GCTAATTA AGAAGCATGA chr3R:14630263-14630383 38 2.58e-05 TTTACGGTTG GCTAATTA CTCGCGTGCC chr3L:13877134-13877254 74 2.58e-05 GCGTTCAATT GCTAATTA GCTTTGGTTA chr3R:22330695-22330815 23 2.58e-05 GCCATGAAAT GCTAATTA GCTAAATTGA chr3R:16071835-16071955 56 2.58e-05 TCCTCTTCCA GCTAATTA TGAGTATCGA chr3R:18398106-18398226 29 2.58e-05 GCTTTATATA GCTAATTA ACTGGACGAT chr3L:13065725-13065845 61 2.58e-05 TATATTTCAT GCTAATTA AAACGCCGAG chr2R:15833216-15833336 80 2.58e-05 ATTAACAGCC GCTAATTA AAATAAAAAA chrX:1120401-1120521 47 2.58e-05 AGGGTTCTAA GCTAATTA CCTTATCTGC chr2L:13552781-13552901 25 2.58e-05 TCCACTCTTG GCTAATTA GCCAAAGTCA chr2L:8480947-8481067 55 2.58e-05 TTTTTCATTA GCTAATTA ATTTGATTTC chr3R:30062583-30062703 28 4.49e-05 TATGGTCCGA GCCAATTA TCGACTGAAG chr3R:10045511-10045631 62 4.49e-05 CAGTTGACTG GCCAATTA CCGGGTAGTG chr2L:17472743-17472863 6 4.49e-05 TAATG GCCAATTA ACCGTGGGCT chrX:13735775-13735895 59 4.49e-05 AAATTTGTCA GCCAATTA GCGAGTTCTA chr3L:11690322-11690442 17 4.49e-05 TGGTAATTGA GCCAATTA ATTTAACTCT chr3L:20837712-20837832 72 4.49e-05 TATTGACGCG GCCAATTA AGAAGGCAGC chr3L:18634847-18634967 44 4.49e-05 CACTTTCGTG GCCAATTA GTCACCTAAA chr2L:15609294-15609414 82 4.49e-05 GTCATGTGTA GCCAATTA AAAAAACTTG chrX:17698034-17698154 34 4.49e-05 CGGGGTATTG GCCAATTA GCCAACATAC chr3R:24799664-24799784 14 4.49e-05 GCTGAGCGTG GCCAATTA GATAAGCACC chr3R:28899308-28899428 74 4.49e-05 GAAATATTAA GCCAATTA CCTTACACAA chr2L:20772369-20772489 22 4.49e-05 AGTCCAAATG GCCAATTA GCTCATAAAA chr3R:11172537-11172657 40 4.49e-05 GCCATATCAG GCCAATTA GCAGAATGCC chr3L:21201390-21201510 89 4.49e-05 CGCTGTAACA GCCAATTA AGAACTTGTG chr3L:20410902-20411022 73 4.49e-05 ACTTTTAAAG GCCAATTA ACTTCGTTTG chr3R:25060584-25060704 29 4.49e-05 TTCTTGCTAG GCCAATTA CTGAAAATGC chrX:5618718-5618838 28 4.49e-05 AAGGAATGCA GCCAATTA AGTAAAGTAT chr2L:6073996-6074116 59 4.49e-05 TTCTTCTCAA GCCAATTA AAAAATGATA chr3L:1742336-1742456 54 7.02e-05 AGGGTCGCCG GCTAATTT GAACTGATTA chr2L:10754722-10754842 97 7.02e-05 ATATTTGCCA GCTAATTT GGCCGCTCAG chr2L:8371082-8371202 71 7.02e-05 TTATCTGACG GCTAATTT TCCCCCGATA chrX:15333661-15333781 101 7.02e-05 ACAAAATAAG GCTAATTT ATAAAAGAAA chr2L:11229778-11229898 5 7.02e-05 TTTG GCTAATTT AATTTATGGC chr2L:5084664-5084784 72 7.02e-05 CTAATAAAAT GCTAATTT AACCCCCCCG chrX:19294105-19294225 38 7.02e-05 AGGTTCAAGT GCTAATTT GCCTCGTAAA chr2R:8058458-8058578 87 7.02e-05 TCTTCTCGCA GCTAATTT AATTCAACCT chr3L:6342688-6342808 3 7.02e-05 CC GCTAATTT AGTTACTAAC chr2R:21389820-21389940 64 7.02e-05 TTGCAAATAA GCTAATTT TCTTATCAGC chrX:5289813-5289933 42 7.02e-05 GGGCGCCACA GCTAATTT CATTTTATAG chr3R:16446935-16447055 45 7.02e-05 GTTGAAGTAA GCTAATTT GCCATAGGAC chr2R:7655311-7655431 79 7.02e-05 TCGTTTATTA GCTAATTT GTATATTTTT chrX:16309902-16310022 71 7.02e-05 TAATTTAGTA GCTAATTT AGCTTCCTGA chrX:10762722-10762842 51 7.02e-05 CTGATAGTAG GCTAATTT GTAATCCCCA chr3L:11015340-11015460 79 7.02e-05 CGAGTCTCGG GCTAATTT GAATTTTCAA chrX:246242-246362 69 8.94e-05 CAGCATGTGA GCTAATCA GCAAAGCAGC chr3L:19902680-19902800 53 8.94e-05 ACATATGCAT GCTAATCA ACGGAAAGCA chr2L:17741301-17741421 58 8.94e-05 TGTGAGATCT GCTAATCA GTTGACGAAG chr3R:16284990-16285110 50 8.94e-05 TGACGTCGCT GCTAATCA AGGCGCGCTT chr3R:23139116-23139236 73 8.94e-05 CGTTTATGGC GCTAATCA ATAACAAGGC chr3R:23460735-23460855 10 8.94e-05 CGAGCCTTG GCTAATCA CTAATCACCA chr2L:20869467-20869587 68 8.94e-05 TGTATTAATG GCTAATCA ACGCCGAACA chr3R:16272696-16272816 69 1.27e-04 AAATTTACCG GCTAATTG GTTTCGCCAG chr2R:18602473-18602593 32 1.27e-04 AATTAGAGGT GCTAATTG GGTGGAGCTG chr2L:14673793-14673913 31 1.27e-04 ATTTTCGGGC GCTAATTG AAGAGCCAGA chr2R:13836721-13836841 54 1.27e-04 CCTCGATGGA GCCAATTT GGGAGCTGAG chr3R:20975513-20975633 72 1.27e-04 GCTCGGGCTG GCTAATTG AGAATTTCAA chr2R:20123616-20123736 69 1.27e-04 GACATGACAA GCTAATTG AAATTTCATT chr2R:24082711-24082831 52 1.27e-04 TGTTACGGTG GCCAATTT GAATGTTTAT chr2R:17086981-17087101 96 1.46e-04 TAAATAACCA GCTAATGA ACAATTCATG chr2R:16882682-16882802 60 1.46e-04 GGTTAATGAA GCTAATGA ATCAATTAGT chr3R:10098445-10098565 24 1.46e-04 TTCATGAAGT GCTAATGA AAAATGCTCA chr3L:8452394-8452514 107 1.46e-04 CTTGTATACT GCTAATGA GTTGCC chr2R:9107003-9107123 112 1.65e-04 CATTTCATAA GCTACTTA A chr3R:16081339-16081459 65 1.65e-04 ACTGCCCTCG GCTACTTA TTTGTTATTC chr2L:4995910-4996030 61 1.65e-04 CAGGTAGCAA GCTACTTA GGGCAATCCA chrX:22634188-22634308 44 1.79e-04 ATGCATGACA GCCAATCA AGCAATCTGC chr3L:6615351-6615471 92 1.93e-04 TTTGGAGTGT GCCAATTG ACTGATAAGC chr2R:13918412-13918532 109 2.18e-04 AACATTTCGA GGTAATTA GTAA chr2R:9268696-9268816 64 2.18e-04 ACAAGTTCAC GGTAATTA GCTGGAACAG chr3R:10053667-10053787 17 2.77e-04 TCAACAAACA GCTAATCT CTTAGAAAAA chr2L:3057963-3058083 41 2.77e-04 CGAGTGTCTG GCTAATCT TTATCGGCTA chr2R:22590702-22590822 63 2.77e-04 TCGCAAATAA GCCAATGA CTTAATTAGC chr3R:25550504-25550624 48 2.77e-04 GTATAAAGTA GCCAATGA TATTTATTTT chr3L:7263492-7263612 47 2.77e-04 CTTGGCTAAG GCTAATAA TAGCAGCAGG chr3R:15090287-15090407 34 2.77e-04 ACCATTGAGA GCTAATAA TCAAGAAGCA chr2R:5682500-5682620 68 2.77e-04 AGCAAACAAA GCTAATAA AACCATAACA chr3L:1200826-1200946 110 2.77e-04 AACCGAGGCA GCTAATAA AAA chr3R:10514909-10515029 51 2.77e-04 CTGCCCAGCA GCTAATCT AATCGGCTGG chr3L:16985756-16985876 40 2.91e-04 CCAAGTTGAG GCCACTTA TTCATTTTGC chr3R:20006726-20006846 71 2.91e-04 CCCTTATCTA GCCACTTA CTTAGTAGCT chr3R:29111930-29112050 70 2.91e-04 AACAACTCCA GCCACTTA GGCACTTATC chr3L:10088595-10088715 3 2.91e-04 TC GCCACTTA ATGACCAATG chr3L:15692369-15692489 84 3.62e-04 AATTTGAATA GTTAATTA AAATATTTAT chr3L:16957658-16957778 54 3.62e-04 ACTATTTCAC ACTAATTA GCTCCATCAT chr2R:10130280-10130400 52 3.62e-04 GGGTCCCTGC ACTAATTA CCCCGAAACG chr3L:439618-439738 111 3.62e-04 TGCATTTACC GTTAATTA GC chr3R:12405173-12405293 65 3.62e-04 CCAATATGAA GTTAATTA ATAAATTAGA chr3L:20616388-20616508 86 3.62e-04 TCACATTTCA ACTAATTA ACACTACGAC chr3L:12079760-12079880 17 3.62e-04 TATCGGTGAG ACTAATTA AAAAGCAAGT chr3R:26892026-26892146 87 3.62e-04 CAGGCTACAA GTTAATTA GCCACAGAAA chr2L:20322399-20322519 79 3.62e-04 ACTGCAGTGC ACTAATTA AGCTTAGCTC chr3R:13231369-13231489 17 3.62e-04 AACCAATACG GTTAATTA GCATAAATTA chrX:5718115-5718235 109 3.62e-04 CACTGAATGA GTTAATTA AGTT chr3R:4814831-4814951 101 3.99e-04 TGGAACTATA GCTAATGT TTGATAGAAC chr2R:9610483-9610603 69 3.99e-04 TCAAACGGCA GCTAATTC CGGGCGATAA chr3L:15695325-15695445 23 3.99e-04 ATAAACGTGG GCTAATGT GCATTTTATT chr3L:16994948-16995068 101 3.99e-04 ATCTGGCCCG GCTAATTC TAACCCAGAT chr3L:11378569-11378689 101 4.37e-04 AATTAATTAT GGCAATTA GATCTTATCC chrX:8140911-8141031 43 4.37e-04 TGCGTGCTTT GGCAATTA AAACCTGATA chr3L:3351128-3351248 76 4.37e-04 TTTTTATAGA GGCAATTA TGTTGGCGAT chrX:17587809-17587929 70 4.84e-04 ATCGGTGTCA GCTAATCG AGCACCCACA chr2L:392670-392790 65 4.84e-04 GCGGAGCTAT GCTAATCG CTGGGATTAT chr3R:16246732-16246852 3 5.36e-04 AC ACCAATTA ATATTTCAGT chr3L:11717380-11717500 105 5.75e-04 GTAGCGAGCA GGTAATTT CTGCCTTC chr2L:16494239-16494359 9 6.43e-04 TTATTGAA GCTAATAT TTTCTAGTTA chr2R:11341599-11341719 47 6.70e-04 ATATTTAATT GCTACTTG AAGCAATAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTAATTA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9425803-9425923 2.6e-05 110_[+1]_2 chr3R:16092193-16092313 2.6e-05 11_[+1]_101 chr2R:21550003-21550123 2.6e-05 58_[+1]_54 chr2R:20975303-20975423 2.6e-05 66_[+1]_46 chr2R:17737119-17737239 2.6e-05 66_[+1]_46 chr2L:12593545-12593665 2.6e-05 68_[+1]_44 chr3L:811703-811823 2.6e-05 89_[+1]_23 chr3L:19777345-19777465 2.6e-05 36_[+1]_76 chr2R:12262176-12262296 2.6e-05 33_[+1]_79 chr3L:10862492-10862612 2.6e-05 109_[+1]_3 chr2L:9121671-9121791 2.6e-05 66_[+1]_46 chr2R:12645505-12645625 2.6e-05 93_[+1]_19 chr3L:11547715-11547835 2.6e-05 55_[+1]_57 chr3R:16273627-16273747 2.6e-05 60_[+1]_52 chr3R:13913420-13913540 2.6e-05 14_[+1]_98 chr2R:6770320-6770440 2.6e-05 76_[+1]_36 chr3R:16237452-16237572 2.6e-05 26_[+1]_86 chr3L:8029016-8029136 2.6e-05 59_[+1]_53 chr3L:13228004-13228124 2.6e-05 71_[+1]_41 chr3R:5517974-5518094 2.6e-05 51_[+1]_61 chrX:15496879-15496999 2.6e-05 69_[+1]_43 chr3R:25660045-25660165 2.6e-05 76_[+1]_36 chrX:899523-899643 2.6e-05 9_[+1]_103 chr3R:14630263-14630383 2.6e-05 37_[+1]_75 chr3L:13877134-13877254 2.6e-05 73_[+1]_39 chr3R:22330695-22330815 2.6e-05 22_[+1]_90 chr3R:16071835-16071955 2.6e-05 55_[+1]_57 chr3R:18398106-18398226 2.6e-05 28_[+1]_84 chr3L:13065725-13065845 2.6e-05 60_[+1]_52 chr2R:15833216-15833336 2.6e-05 79_[+1]_33 chrX:1120401-1120521 2.6e-05 46_[+1]_66 chr2L:13552781-13552901 2.6e-05 24_[+1]_88 chr2L:8480947-8481067 2.6e-05 54_[+1]_58 chr3R:30062583-30062703 4.5e-05 27_[+1]_85 chr3R:10045511-10045631 4.5e-05 61_[+1]_51 chr2L:17472743-17472863 4.5e-05 5_[+1]_107 chrX:13735775-13735895 4.5e-05 58_[+1]_54 chr3L:11690322-11690442 4.5e-05 16_[+1]_96 chr3L:20837712-20837832 4.5e-05 71_[+1]_41 chr3L:18634847-18634967 4.5e-05 43_[+1]_69 chr2L:15609294-15609414 4.5e-05 81_[+1]_31 chrX:17698034-17698154 4.5e-05 33_[+1]_79 chr3R:24799664-24799784 4.5e-05 13_[+1]_99 chr3R:28899308-28899428 4.5e-05 73_[+1]_39 chr2L:20772369-20772489 4.5e-05 21_[+1]_91 chr3R:11172537-11172657 4.5e-05 39_[+1]_73 chr3L:21201390-21201510 4.5e-05 88_[+1]_24 chr3L:20410902-20411022 4.5e-05 72_[+1]_40 chr3R:25060584-25060704 4.5e-05 28_[+1]_84 chrX:5618718-5618838 4.5e-05 27_[+1]_85 chr2L:6073996-6074116 4.5e-05 58_[+1]_54 chr3L:1742336-1742456 7e-05 53_[+1]_59 chr2L:10754722-10754842 7e-05 96_[+1]_16 chr2L:8371082-8371202 7e-05 70_[+1]_42 chrX:15333661-15333781 7e-05 100_[+1]_12 chr2L:11229778-11229898 7e-05 4_[+1]_108 chr2L:5084664-5084784 7e-05 71_[+1]_41 chrX:19294105-19294225 7e-05 37_[+1]_75 chr2R:8058458-8058578 7e-05 86_[+1]_26 chr3L:6342688-6342808 7e-05 2_[+1]_110 chr2R:21389820-21389940 7e-05 63_[+1]_49 chrX:5289813-5289933 7e-05 41_[+1]_71 chr3R:16446935-16447055 7e-05 44_[+1]_68 chr2R:7655311-7655431 7e-05 78_[+1]_34 chrX:16309902-16310022 7e-05 70_[+1]_42 chrX:10762722-10762842 7e-05 50_[+1]_62 chr3L:11015340-11015460 7e-05 78_[+1]_34 chrX:246242-246362 8.9e-05 68_[+1]_44 chr3L:19902680-19902800 8.9e-05 52_[+1]_60 chr2L:17741301-17741421 8.9e-05 57_[+1]_55 chr3R:16284990-16285110 8.9e-05 49_[+1]_63 chr3R:23139116-23139236 8.9e-05 72_[+1]_40 chr3R:23460735-23460855 8.9e-05 9_[+1]_103 chr2L:20869467-20869587 8.9e-05 67_[+1]_45 chr3R:16272696-16272816 0.00013 68_[+1]_44 chr2R:18602473-18602593 0.00013 31_[+1]_81 chr2L:14673793-14673913 0.00013 30_[+1]_82 chr2R:13836721-13836841 0.00013 53_[+1]_59 chr3R:20975513-20975633 0.00013 71_[+1]_41 chr2R:20123616-20123736 0.00013 68_[+1]_44 chr2R:24082711-24082831 0.00013 51_[+1]_61 chr2R:17086981-17087101 0.00015 95_[+1]_17 chr2R:16882682-16882802 0.00015 59_[+1]_53 chr3R:10098445-10098565 0.00015 23_[+1]_89 chr3L:8452394-8452514 0.00015 106_[+1]_6 chr2R:9107003-9107123 0.00016 111_[+1]_1 chr3R:16081339-16081459 0.00016 64_[+1]_48 chr2L:4995910-4996030 0.00016 60_[+1]_52 chrX:22634188-22634308 0.00018 43_[+1]_69 chr3L:6615351-6615471 0.00019 91_[+1]_21 chr2R:13918412-13918532 0.00022 108_[+1]_4 chr2R:9268696-9268816 0.00022 63_[+1]_49 chr3R:10053667-10053787 0.00028 16_[+1]_96 chr2L:3057963-3058083 0.00028 40_[+1]_72 chr2R:22590702-22590822 0.00028 62_[+1]_50 chr3R:25550504-25550624 0.00028 47_[+1]_65 chr3L:7263492-7263612 0.00028 46_[+1]_66 chr3R:15090287-15090407 0.00028 33_[+1]_79 chr2R:5682500-5682620 0.00028 67_[+1]_45 chr3L:1200826-1200946 0.00028 109_[+1]_3 chr3R:10514909-10515029 0.00028 50_[+1]_62 chr3L:16985756-16985876 0.00029 39_[+1]_73 chr3R:20006726-20006846 0.00029 70_[+1]_42 chr3R:29111930-29112050 0.00029 69_[+1]_43 chr3L:10088595-10088715 0.00029 2_[+1]_110 chr3L:15692369-15692489 0.00036 83_[+1]_29 chr3L:16957658-16957778 0.00036 53_[+1]_59 chr2R:10130280-10130400 0.00036 51_[+1]_61 chr3L:439618-439738 0.00036 110_[+1]_2 chr3R:12405173-12405293 0.00036 64_[+1]_48 chr3L:20616388-20616508 0.00036 85_[+1]_27 chr3L:12079760-12079880 0.00036 16_[+1]_96 chr3R:26892026-26892146 0.00036 86_[+1]_26 chr2L:20322399-20322519 0.00036 78_[+1]_34 chr3R:13231369-13231489 0.00036 16_[+1]_96 chrX:5718115-5718235 0.00036 108_[+1]_4 chr3R:4814831-4814951 0.0004 100_[+1]_12 chr2R:9610483-9610603 0.0004 68_[+1]_44 chr3L:15695325-15695445 0.0004 22_[+1]_90 chr3L:16994948-16995068 0.0004 100_[+1]_12 chr3L:11378569-11378689 0.00044 100_[+1]_12 chrX:8140911-8141031 0.00044 42_[+1]_70 chr3L:3351128-3351248 0.00044 75_[+1]_37 chrX:17587809-17587929 0.00048 69_[+1]_43 chr2L:392670-392790 0.00048 64_[+1]_48 chr3R:16246732-16246852 0.00054 2_[+1]_110 chr3L:11717380-11717500 0.00058 104_[+1]_8 chr2L:16494239-16494359 0.00064 8_[+1]_104 chr2R:11341599-11341719 0.00067 46_[+1]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTAATTA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTAATTA width=8 seqs=129 chr3L:9425803-9425923 ( 111) GCTAATTA 1 chr3R:16092193-16092313 ( 12) GCTAATTA 1 chr2R:21550003-21550123 ( 59) GCTAATTA 1 chr2R:20975303-20975423 ( 67) GCTAATTA 1 chr2R:17737119-17737239 ( 67) GCTAATTA 1 chr2L:12593545-12593665 ( 69) GCTAATTA 1 chr3L:811703-811823 ( 90) GCTAATTA 1 chr3L:19777345-19777465 ( 37) GCTAATTA 1 chr2R:12262176-12262296 ( 34) GCTAATTA 1 chr3L:10862492-10862612 ( 110) GCTAATTA 1 chr2L:9121671-9121791 ( 67) GCTAATTA 1 chr2R:12645505-12645625 ( 94) GCTAATTA 1 chr3L:11547715-11547835 ( 56) GCTAATTA 1 chr3R:16273627-16273747 ( 61) GCTAATTA 1 chr3R:13913420-13913540 ( 15) GCTAATTA 1 chr2R:6770320-6770440 ( 77) GCTAATTA 1 chr3R:16237452-16237572 ( 27) GCTAATTA 1 chr3L:8029016-8029136 ( 60) GCTAATTA 1 chr3L:13228004-13228124 ( 72) GCTAATTA 1 chr3R:5517974-5518094 ( 52) GCTAATTA 1 chrX:15496879-15496999 ( 70) GCTAATTA 1 chr3R:25660045-25660165 ( 77) GCTAATTA 1 chrX:899523-899643 ( 10) GCTAATTA 1 chr3R:14630263-14630383 ( 38) GCTAATTA 1 chr3L:13877134-13877254 ( 74) GCTAATTA 1 chr3R:22330695-22330815 ( 23) GCTAATTA 1 chr3R:16071835-16071955 ( 56) GCTAATTA 1 chr3R:18398106-18398226 ( 29) GCTAATTA 1 chr3L:13065725-13065845 ( 61) GCTAATTA 1 chr2R:15833216-15833336 ( 80) GCTAATTA 1 chrX:1120401-1120521 ( 47) GCTAATTA 1 chr2L:13552781-13552901 ( 25) GCTAATTA 1 chr2L:8480947-8481067 ( 55) GCTAATTA 1 chr3R:30062583-30062703 ( 28) GCCAATTA 1 chr3R:10045511-10045631 ( 62) GCCAATTA 1 chr2L:17472743-17472863 ( 6) GCCAATTA 1 chrX:13735775-13735895 ( 59) GCCAATTA 1 chr3L:11690322-11690442 ( 17) GCCAATTA 1 chr3L:20837712-20837832 ( 72) GCCAATTA 1 chr3L:18634847-18634967 ( 44) GCCAATTA 1 chr2L:15609294-15609414 ( 82) GCCAATTA 1 chrX:17698034-17698154 ( 34) GCCAATTA 1 chr3R:24799664-24799784 ( 14) GCCAATTA 1 chr3R:28899308-28899428 ( 74) GCCAATTA 1 chr2L:20772369-20772489 ( 22) GCCAATTA 1 chr3R:11172537-11172657 ( 40) GCCAATTA 1 chr3L:21201390-21201510 ( 89) GCCAATTA 1 chr3L:20410902-20411022 ( 73) GCCAATTA 1 chr3R:25060584-25060704 ( 29) GCCAATTA 1 chrX:5618718-5618838 ( 28) GCCAATTA 1 chr2L:6073996-6074116 ( 59) GCCAATTA 1 chr3L:1742336-1742456 ( 54) GCTAATTT 1 chr2L:10754722-10754842 ( 97) GCTAATTT 1 chr2L:8371082-8371202 ( 71) GCTAATTT 1 chrX:15333661-15333781 ( 101) GCTAATTT 1 chr2L:11229778-11229898 ( 5) GCTAATTT 1 chr2L:5084664-5084784 ( 72) GCTAATTT 1 chrX:19294105-19294225 ( 38) GCTAATTT 1 chr2R:8058458-8058578 ( 87) GCTAATTT 1 chr3L:6342688-6342808 ( 3) GCTAATTT 1 chr2R:21389820-21389940 ( 64) GCTAATTT 1 chrX:5289813-5289933 ( 42) GCTAATTT 1 chr3R:16446935-16447055 ( 45) GCTAATTT 1 chr2R:7655311-7655431 ( 79) GCTAATTT 1 chrX:16309902-16310022 ( 71) GCTAATTT 1 chrX:10762722-10762842 ( 51) GCTAATTT 1 chr3L:11015340-11015460 ( 79) GCTAATTT 1 chrX:246242-246362 ( 69) GCTAATCA 1 chr3L:19902680-19902800 ( 53) GCTAATCA 1 chr2L:17741301-17741421 ( 58) GCTAATCA 1 chr3R:16284990-16285110 ( 50) GCTAATCA 1 chr3R:23139116-23139236 ( 73) GCTAATCA 1 chr3R:23460735-23460855 ( 10) GCTAATCA 1 chr2L:20869467-20869587 ( 68) GCTAATCA 1 chr3R:16272696-16272816 ( 69) GCTAATTG 1 chr2R:18602473-18602593 ( 32) GCTAATTG 1 chr2L:14673793-14673913 ( 31) GCTAATTG 1 chr2R:13836721-13836841 ( 54) GCCAATTT 1 chr3R:20975513-20975633 ( 72) GCTAATTG 1 chr2R:20123616-20123736 ( 69) GCTAATTG 1 chr2R:24082711-24082831 ( 52) GCCAATTT 1 chr2R:17086981-17087101 ( 96) GCTAATGA 1 chr2R:16882682-16882802 ( 60) GCTAATGA 1 chr3R:10098445-10098565 ( 24) GCTAATGA 1 chr3L:8452394-8452514 ( 107) GCTAATGA 1 chr2R:9107003-9107123 ( 112) GCTACTTA 1 chr3R:16081339-16081459 ( 65) GCTACTTA 1 chr2L:4995910-4996030 ( 61) GCTACTTA 1 chrX:22634188-22634308 ( 44) GCCAATCA 1 chr3L:6615351-6615471 ( 92) GCCAATTG 1 chr2R:13918412-13918532 ( 109) GGTAATTA 1 chr2R:9268696-9268816 ( 64) GGTAATTA 1 chr3R:10053667-10053787 ( 17) GCTAATCT 1 chr2L:3057963-3058083 ( 41) GCTAATCT 1 chr2R:22590702-22590822 ( 63) GCCAATGA 1 chr3R:25550504-25550624 ( 48) GCCAATGA 1 chr3L:7263492-7263612 ( 47) GCTAATAA 1 chr3R:15090287-15090407 ( 34) GCTAATAA 1 chr2R:5682500-5682620 ( 68) GCTAATAA 1 chr3L:1200826-1200946 ( 110) GCTAATAA 1 chr3R:10514909-10515029 ( 51) GCTAATCT 1 chr3L:16985756-16985876 ( 40) GCCACTTA 1 chr3R:20006726-20006846 ( 71) GCCACTTA 1 chr3R:29111930-29112050 ( 70) GCCACTTA 1 chr3L:10088595-10088715 ( 3) GCCACTTA 1 chr3L:15692369-15692489 ( 84) GTTAATTA 1 chr3L:16957658-16957778 ( 54) ACTAATTA 1 chr2R:10130280-10130400 ( 52) ACTAATTA 1 chr3L:439618-439738 ( 111) GTTAATTA 1 chr3R:12405173-12405293 ( 65) GTTAATTA 1 chr3L:20616388-20616508 ( 86) ACTAATTA 1 chr3L:12079760-12079880 ( 17) ACTAATTA 1 chr3R:26892026-26892146 ( 87) GTTAATTA 1 chr2L:20322399-20322519 ( 79) ACTAATTA 1 chr3R:13231369-13231489 ( 17) GTTAATTA 1 chrX:5718115-5718235 ( 109) GTTAATTA 1 chr3R:4814831-4814951 ( 101) GCTAATGT 1 chr2R:9610483-9610603 ( 69) GCTAATTC 1 chr3L:15695325-15695445 ( 23) GCTAATGT 1 chr3L:16994948-16995068 ( 101) GCTAATTC 1 chr3L:11378569-11378689 ( 101) GGCAATTA 1 chrX:8140911-8141031 ( 43) GGCAATTA 1 chr3L:3351128-3351248 ( 76) GGCAATTA 1 chrX:17587809-17587929 ( 70) GCTAATCG 1 chr2L:392670-392790 ( 65) GCTAATCG 1 chr3R:16246732-16246852 ( 3) ACCAATTA 1 chr3L:11717380-11717500 ( 105) GGTAATTT 1 chr2L:16494239-16494359 ( 9) GCTAATAT 1 chr2R:11341599-11341719 ( 47) GCTACTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTAATTA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.09964 E= 1.7e-078 -264 -1366 217 -1366 -1366 210 -218 -262 -1366 23 -1366 139 178 -1366 -1366 -1366 169 -177 -1366 -1366 -1366 -1366 -1366 181 -291 -107 -177 148 131 -377 -160 -56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTAATTA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 129 E= 1.7e-078 0.046512 0.000000 0.953488 0.000000 0.000000 0.906977 0.046512 0.046512 0.000000 0.248062 0.000000 0.751938 1.000000 0.000000 0.000000 0.000000 0.937984 0.062016 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.038760 0.100775 0.062016 0.798450 0.720930 0.015504 0.069767 0.193798 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTAATTA MEME-1 regular expression -------------------------------------------------------------------------------- GC[TC]AATTA -------------------------------------------------------------------------------- Time 7.24 secs. ******************************************************************************** ******************************************************************************** MOTIF TAATTAGC MEME-2 width = 8 sites = 78 llr = 665 E-value = 1.1e-042 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAATTAGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 27a::8:: pos.-specific C 1::::::a probability G :2:::2a: matrix T 71:aa::: bits 2.2 ** 2.0 ** 1.8 *** ** 1.6 *** ** Relative 1.3 *** ** Entropy 1.1 ****** (12.3 bits) 0.9 ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAATTAGC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAATTAGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:26120013-26120133 14 2.58e-05 ACCCACGATC TAATTAGC CGACATAATG chr2L:7284364-7284484 47 2.58e-05 GAACATTTTT TAATTAGC AAAAACTCCT chr3L:11684966-11685086 111 2.58e-05 AATCGAAACT TAATTAGC TG chr3R:23161620-23161740 63 2.58e-05 TAGATATGTG TAATTAGC CAGACGGTGG chr3L:10954014-10954134 11 2.58e-05 CTGGGGGCAT TAATTAGC TCCGATTTAG chr2R:22590702-22590822 73 2.58e-05 GCCAATGACT TAATTAGC CTGACAAACA chr2R:20137936-20138056 64 2.58e-05 ACGAAGATTT TAATTAGC ATATTATGAG chr3L:20548602-20548722 15 2.58e-05 ATATAAATTT TAATTAGC CGAACGATAT chr2R:14001902-14002022 58 2.58e-05 TGAACTTCAT TAATTAGC CTCATGAAAT chrX:10740208-10740328 58 2.58e-05 AGCATCTATA TAATTAGC TTTTCGTTTG chr2R:12645505-12645625 52 2.58e-05 CAAATGATAG TAATTAGC TATTATGCGA chr2R:14492645-14492765 45 2.58e-05 AACGGTTATT TAATTAGC TAACAGCCAC chr3R:21887065-21887185 41 2.58e-05 ACAAGGCACT TAATTAGC TGTTACGGAA chr2R:18372607-18372727 41 2.58e-05 CCCCTACTCA TAATTAGC AGTAATCGAA chr3R:9028804-9028924 53 2.58e-05 CCTTCTAATA TAATTAGC CACCgaaagg chr2L:14374114-14374234 67 2.58e-05 GCGGTCAAAT TAATTAGC TGGGGCCTCA chr3R:24926946-24927066 17 2.58e-05 ACTGCTCATG TAATTAGC TAAATTAGAA chr2L:16494239-16494359 50 2.58e-05 GCTGAGCATT TAATTAGC TTAGGTAATA chr2R:12926126-12926246 61 2.58e-05 GGCAACAAAG TAATTAGC CTTCTGCGGG chr2L:392670-392790 90 2.58e-05 TATAATTAAT TAATTAGC CAGCCGGCAG chr3R:30345594-30345714 89 2.58e-05 CCTATGACAA TAATTAGC TGAGTAAACA chr2L:11961570-11961690 57 2.58e-05 TACACATGCA TAATTAGC AGGTCCGGCG chr3L:1580040-1580160 29 2.58e-05 TGGGCAAACT TAATTAGC TGAATGGCAC chr2R:23727478-23727598 53 2.58e-05 CTCACCCTTT TAATTAGC CAGTGTAACT chr3R:22396396-22396516 44 2.58e-05 ATATTACCTT TAATTAGC TTCAGTTCAT chr2L:6236631-6236751 81 2.58e-05 ATGTTCTGTC TAATTAGC AATATGTCAA chr3L:16985756-16985876 74 6.32e-05 TGTTTATGCA TAATTGGC TGTGCTCCAC chr3L:17003960-17004080 48 6.32e-05 GATTATGTTT TGATTAGC CCTCGGATAC chrX:18492130-18492250 19 6.32e-05 CCACATCGAC TAATTGGC CATAATGCTG chr2R:21548526-21548646 82 6.32e-05 CAGAACGCAC TGATTAGC CAAGCACTGA chrX:8140911-8141031 59 6.32e-05 TAAAACCTGA TAATTGGC TTGCATGTGT chr2R:21611363-21611483 45 6.32e-05 CAACAGTGGA TAATTGGC GGGTAGATCG chr3L:8073475-8073595 16 6.32e-05 GGTGAGCAAC TGATTAGC TCCGGTAATC chr3L:15538949-15539069 49 6.32e-05 TGCCCAATTT TGATTAGC CTTAGCGCAC chr2L:11738871-11738991 43 6.32e-05 AGCCCCAGTC TAATTGGC CATAGGGCTC chr3R:18196770-18196890 83 6.32e-05 tgttgttttt taattggc cgcgctttgg chrX:16572709-16572829 49 6.32e-05 GTCGATAAGG TAATTGGC CTAATTTCTC chr3R:5306018-5306138 53 6.32e-05 ATGACAAAAT TAATTGGC TTGTCGGCGG chrX:580892-581012 71 6.32e-05 TAAATTGAGC TGATTAGC CAGCATATCA chr3R:13734623-13734743 14 6.32e-05 taggttcGGT TAATTGGC CTCGCATGCG chr2L:6178189-6178309 50 6.32e-05 CGATATCAGT TGATTAGC GGCGATCCAC chr2R:22845215-22845335 63 6.32e-05 TAAGTGATTG TAATTGGC TCTGGCGATT chr2R:24328234-24328354 27 6.32e-05 AGATACGCCT TGATTAGC CATGTGTGCG chr3L:9209869-9209989 65 6.32e-05 TGACTATAAT TAATTGGC AATAAAATCT chr3L:19225732-19225852 13 6.32e-05 TCACGCTTCT TGATTAGC CGAAAGCAGT chr3R:16501175-16501295 30 6.32e-05 TGCCCAACGT TGATTAGC CTGCTCGAGG chr2R:15917360-15917480 61 6.32e-05 GTCGGGCGAT TAATTGGC GTTATAAATA chr3R:27071317-27071437 54 1.09e-04 CGAATCGCTT AAATTAGC CCGCCAGTCG chr3L:16291813-16291933 51 1.09e-04 TCGTTGCTCT CAATTAGC CGTGGAAAAG chr3R:23939151-23939271 22 1.09e-04 ATAAAATCCA AAATTAGC TTAATTTTTG chr2R:11341599-11341719 1 1.09e-04 . CAATTAGC CTTAGTTCAG chr2R:9601992-9602112 87 1.09e-04 GAACGAAAAT AAATTAGC TAGAGTGGCT chr2L:12421939-12422059 32 1.09e-04 CCCTCTCACT CAATTAGC CGCTGGGCTT chr2R:19395008-19395128 70 1.09e-04 GCACGGCGAT CAATTAGC TCCATTGTAT chr2R:8636160-8636280 32 1.09e-04 GGCCCATAGA AAATTAGC TGTATTTTCC chr3L:12459607-12459727 13 1.09e-04 TATACCCACT CAATTAGC TGCCGGCGAA chr3R:23460735-23460855 71 1.09e-04 TGCAACAAAT CAATTAGC CGCTTAATTA chr3R:27681944-27682064 42 1.09e-04 AAGATTTTCC AAATTAGC TTGAAGTGTG chr3R:30431373-30431493 66 1.09e-04 CGATTAGCGA AAATTAGC TTATTAAACC chrX:5618718-5618838 89 1.09e-04 AGACTGGCGA AAATTAGC GCGGTATTAA chrX:10370428-10370548 55 1.22e-04 GGGGCTCTAG TGATTGGC CCCGCCTATC chr2L:7533963-7534083 79 1.47e-04 AGGCCAACCT TTATTAGC CCCAAACTAT chr3L:19258352-19258472 85 1.47e-04 GATTGACTTT TTATTAGC CGGTTGTATA chr3L:19872595-19872715 54 1.47e-04 CGTGTGTTTC TTATTAGC CACTCCAACC chr3L:6804202-6804322 46 1.47e-04 TTTGTACCTC TTATTAGC CAGAAAAAAA chr3L:15704900-15705020 42 1.47e-04 TGATTGAACA TTATTAGC ACTCAAGCAT chr2R:12597176-12597296 43 1.47e-04 GCGTAATTCT TTATTAGC TCACACACTC chr3L:12392890-12393010 52 2.13e-04 TTGACTTAAC AGATTAGC GTTGCTTAAA chr2R:5682500-5682620 50 2.13e-04 CAATCGATAT CGATTAGC AGCAAACAAA chr2R:16882682-16882802 99 2.13e-04 AGCTCTCAAC AAATTGGC TTGCGCTTAC chrX:13741279-13741399 8 2.13e-04 TGTTGCC AGATTAGC CTATAAATTG chr3L:15741076-15741196 105 2.32e-04 GCAACCGATA TCATTAGC TGCCGTTG chr2L:8104195-8104315 23 2.32e-04 CGTTCTCTCC TCATTAGC CGCTCTCGCT chr2R:20123616-20123736 82 2.32e-04 AATTGAAATT TCATTAGC GTTGGCCCAC chr2R:8458094-8458214 16 2.74e-04 ATCATGAGAC AGATTGGC TGGTAAATGA chr3L:17616024-17616144 75 2.74e-04 ACAGCTTAGC CGATTGGC CAGATTACTA chr3R:15090287-15090407 1 2.74e-04 . AGATTGGC TCTGACCTTA chr3L:11015340-11015460 43 2.74e-04 TTTTATTGCC CGATTGGC TATAATATCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAATTAGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:26120013-26120133 2.6e-05 13_[+2]_99 chr2L:7284364-7284484 2.6e-05 46_[+2]_66 chr3L:11684966-11685086 2.6e-05 110_[+2]_2 chr3R:23161620-23161740 2.6e-05 62_[+2]_50 chr3L:10954014-10954134 2.6e-05 10_[+2]_102 chr2R:22590702-22590822 2.6e-05 72_[+2]_40 chr2R:20137936-20138056 2.6e-05 63_[+2]_49 chr3L:20548602-20548722 2.6e-05 14_[+2]_98 chr2R:14001902-14002022 2.6e-05 57_[+2]_55 chrX:10740208-10740328 2.6e-05 57_[+2]_55 chr2R:12645505-12645625 2.6e-05 51_[+2]_61 chr2R:14492645-14492765 2.6e-05 44_[+2]_68 chr3R:21887065-21887185 2.6e-05 40_[+2]_72 chr2R:18372607-18372727 2.6e-05 40_[+2]_72 chr3R:9028804-9028924 2.6e-05 52_[+2]_60 chr2L:14374114-14374234 2.6e-05 66_[+2]_46 chr3R:24926946-24927066 2.6e-05 16_[+2]_96 chr2L:16494239-16494359 2.6e-05 49_[+2]_63 chr2R:12926126-12926246 2.6e-05 60_[+2]_52 chr2L:392670-392790 2.6e-05 89_[+2]_23 chr3R:30345594-30345714 2.6e-05 88_[+2]_24 chr2L:11961570-11961690 2.6e-05 56_[+2]_56 chr3L:1580040-1580160 2.6e-05 28_[+2]_84 chr2R:23727478-23727598 2.6e-05 52_[+2]_60 chr3R:22396396-22396516 2.6e-05 43_[+2]_69 chr2L:6236631-6236751 2.6e-05 80_[+2]_32 chr3L:16985756-16985876 6.3e-05 73_[+2]_39 chr3L:17003960-17004080 6.3e-05 47_[+2]_65 chrX:18492130-18492250 6.3e-05 18_[+2]_94 chr2R:21548526-21548646 6.3e-05 81_[+2]_31 chrX:8140911-8141031 6.3e-05 58_[+2]_54 chr2R:21611363-21611483 6.3e-05 44_[+2]_68 chr3L:8073475-8073595 6.3e-05 15_[+2]_97 chr3L:15538949-15539069 6.3e-05 48_[+2]_64 chr2L:11738871-11738991 6.3e-05 42_[+2]_70 chr3R:18196770-18196890 6.3e-05 82_[+2]_30 chrX:16572709-16572829 6.3e-05 48_[+2]_64 chr3R:5306018-5306138 6.3e-05 52_[+2]_60 chrX:580892-581012 6.3e-05 70_[+2]_42 chr3R:13734623-13734743 6.3e-05 13_[+2]_99 chr2L:6178189-6178309 6.3e-05 49_[+2]_63 chr2R:22845215-22845335 6.3e-05 62_[+2]_50 chr2R:24328234-24328354 6.3e-05 26_[+2]_86 chr3L:9209869-9209989 6.3e-05 64_[+2]_48 chr3L:19225732-19225852 6.3e-05 12_[+2]_100 chr3R:16501175-16501295 6.3e-05 29_[+2]_83 chr2R:15917360-15917480 6.3e-05 60_[+2]_52 chr3R:27071317-27071437 0.00011 53_[+2]_59 chr3L:16291813-16291933 0.00011 50_[+2]_62 chr3R:23939151-23939271 0.00011 21_[+2]_91 chr2R:11341599-11341719 0.00011 [+2]_112 chr2R:9601992-9602112 0.00011 86_[+2]_26 chr2L:12421939-12422059 0.00011 31_[+2]_81 chr2R:19395008-19395128 0.00011 69_[+2]_43 chr2R:8636160-8636280 0.00011 31_[+2]_81 chr3L:12459607-12459727 0.00011 12_[+2]_100 chr3R:23460735-23460855 0.00011 70_[+2]_42 chr3R:27681944-27682064 0.00011 41_[+2]_71 chr3R:30431373-30431493 0.00011 65_[+2]_47 chrX:5618718-5618838 0.00011 88_[+2]_24 chrX:10370428-10370548 0.00012 54_[+2]_58 chr2L:7533963-7534083 0.00015 78_[+2]_34 chr3L:19258352-19258472 0.00015 84_[+2]_28 chr3L:19872595-19872715 0.00015 53_[+2]_59 chr3L:6804202-6804322 0.00015 45_[+2]_67 chr3L:15704900-15705020 0.00015 41_[+2]_71 chr2R:12597176-12597296 0.00015 42_[+2]_70 chr3L:12392890-12393010 0.00021 51_[+2]_61 chr2R:5682500-5682620 0.00021 49_[+2]_63 chr2R:16882682-16882802 0.00021 98_[+2]_14 chrX:13741279-13741399 0.00021 7_[+2]_105 chr3L:15741076-15741196 0.00023 104_[+2]_8 chr2L:8104195-8104315 0.00023 22_[+2]_90 chr2R:20123616-20123736 0.00023 81_[+2]_31 chr2R:8458094-8458214 0.00027 15_[+2]_97 chr3L:17616024-17616144 0.00027 74_[+2]_38 chr3R:15090287-15090407 0.00027 [+2]_112 chr3L:11015340-11015460 0.00027 42_[+2]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAATTAGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAATTAGC width=8 seqs=78 chr3R:26120013-26120133 ( 14) TAATTAGC 1 chr2L:7284364-7284484 ( 47) TAATTAGC 1 chr3L:11684966-11685086 ( 111) TAATTAGC 1 chr3R:23161620-23161740 ( 63) TAATTAGC 1 chr3L:10954014-10954134 ( 11) TAATTAGC 1 chr2R:22590702-22590822 ( 73) TAATTAGC 1 chr2R:20137936-20138056 ( 64) TAATTAGC 1 chr3L:20548602-20548722 ( 15) TAATTAGC 1 chr2R:14001902-14002022 ( 58) TAATTAGC 1 chrX:10740208-10740328 ( 58) TAATTAGC 1 chr2R:12645505-12645625 ( 52) TAATTAGC 1 chr2R:14492645-14492765 ( 45) TAATTAGC 1 chr3R:21887065-21887185 ( 41) TAATTAGC 1 chr2R:18372607-18372727 ( 41) TAATTAGC 1 chr3R:9028804-9028924 ( 53) TAATTAGC 1 chr2L:14374114-14374234 ( 67) TAATTAGC 1 chr3R:24926946-24927066 ( 17) TAATTAGC 1 chr2L:16494239-16494359 ( 50) TAATTAGC 1 chr2R:12926126-12926246 ( 61) TAATTAGC 1 chr2L:392670-392790 ( 90) TAATTAGC 1 chr3R:30345594-30345714 ( 89) TAATTAGC 1 chr2L:11961570-11961690 ( 57) TAATTAGC 1 chr3L:1580040-1580160 ( 29) TAATTAGC 1 chr2R:23727478-23727598 ( 53) TAATTAGC 1 chr3R:22396396-22396516 ( 44) TAATTAGC 1 chr2L:6236631-6236751 ( 81) TAATTAGC 1 chr3L:16985756-16985876 ( 74) TAATTGGC 1 chr3L:17003960-17004080 ( 48) TGATTAGC 1 chrX:18492130-18492250 ( 19) TAATTGGC 1 chr2R:21548526-21548646 ( 82) TGATTAGC 1 chrX:8140911-8141031 ( 59) TAATTGGC 1 chr2R:21611363-21611483 ( 45) TAATTGGC 1 chr3L:8073475-8073595 ( 16) TGATTAGC 1 chr3L:15538949-15539069 ( 49) TGATTAGC 1 chr2L:11738871-11738991 ( 43) TAATTGGC 1 chr3R:18196770-18196890 ( 83) TAATTGGC 1 chrX:16572709-16572829 ( 49) TAATTGGC 1 chr3R:5306018-5306138 ( 53) TAATTGGC 1 chrX:580892-581012 ( 71) TGATTAGC 1 chr3R:13734623-13734743 ( 14) TAATTGGC 1 chr2L:6178189-6178309 ( 50) TGATTAGC 1 chr2R:22845215-22845335 ( 63) TAATTGGC 1 chr2R:24328234-24328354 ( 27) TGATTAGC 1 chr3L:9209869-9209989 ( 65) TAATTGGC 1 chr3L:19225732-19225852 ( 13) TGATTAGC 1 chr3R:16501175-16501295 ( 30) TGATTAGC 1 chr2R:15917360-15917480 ( 61) TAATTGGC 1 chr3R:27071317-27071437 ( 54) AAATTAGC 1 chr3L:16291813-16291933 ( 51) CAATTAGC 1 chr3R:23939151-23939271 ( 22) AAATTAGC 1 chr2R:11341599-11341719 ( 1) CAATTAGC 1 chr2R:9601992-9602112 ( 87) AAATTAGC 1 chr2L:12421939-12422059 ( 32) CAATTAGC 1 chr2R:19395008-19395128 ( 70) CAATTAGC 1 chr2R:8636160-8636280 ( 32) AAATTAGC 1 chr3L:12459607-12459727 ( 13) CAATTAGC 1 chr3R:23460735-23460855 ( 71) CAATTAGC 1 chr3R:27681944-27682064 ( 42) AAATTAGC 1 chr3R:30431373-30431493 ( 66) AAATTAGC 1 chrX:5618718-5618838 ( 89) AAATTAGC 1 chrX:10370428-10370548 ( 55) TGATTGGC 1 chr2L:7533963-7534083 ( 79) TTATTAGC 1 chr3L:19258352-19258472 ( 85) TTATTAGC 1 chr3L:19872595-19872715 ( 54) TTATTAGC 1 chr3L:6804202-6804322 ( 46) TTATTAGC 1 chr3L:15704900-15705020 ( 42) TTATTAGC 1 chr2R:12597176-12597296 ( 43) TTATTAGC 1 chr3L:12392890-12393010 ( 52) AGATTAGC 1 chr2R:5682500-5682620 ( 50) CGATTAGC 1 chr2R:16882682-16882802 ( 99) AAATTGGC 1 chrX:13741279-13741399 ( 8) AGATTAGC 1 chr3L:15741076-15741196 ( 105) TCATTAGC 1 chr2L:8104195-8104315 ( 23) TCATTAGC 1 chr2R:20123616-20123736 ( 82) TCATTAGC 1 chr2R:8458094-8458214 ( 16) AGATTGGC 1 chr3L:17616024-17616144 ( 75) CGATTGGC 1 chr3R:15090287-15090407 ( 1) AGATTGGC 1 chr3L:11015340-11015460 ( 43) CGATTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAATTAGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.95669 E= 1.1e-042 -92 -87 -1293 135 120 -246 4 -189 178 -1293 -1293 -1293 -1293 -1293 -1293 180 -1293 -1293 -1293 180 140 -1293 13 -1293 -1293 -1293 224 -1293 -1293 224 -1293 -1293 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAATTAGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 78 E= 1.1e-042 0.153846 0.115385 0.000000 0.730769 0.666667 0.038462 0.217949 0.076923 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.769231 0.000000 0.230769 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAATTAGC MEME-2 regular expression -------------------------------------------------------------------------------- T[AG]ATT[AG]GC -------------------------------------------------------------------------------- Time 13.08 secs. ******************************************************************************** ******************************************************************************** MOTIF GSCGGCGA MEME-3 width = 8 sites = 9 llr = 99 E-value = 2.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSCGGCGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::8 pos.-specific C :3a::a:: probability G a7:aa:a2 matrix T :::::::: bits 2.2 * ***** 2.0 * ***** 1.8 * ***** 1.6 * ***** Relative 1.3 ******* Entropy 1.1 ******** (15.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCGGCGA consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGGCGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5065715-5065835 102 5.47e-06 AGCCAAGCCA GGCGGCGA TCACGTCGAA chr2L:11807455-11807575 81 5.47e-06 TCTAACATAT GGCGGCGA AAAAAGTGCC chr2L:392670-392790 39 5.47e-06 TATGAGACGG GGCGGCGA TCCGGGGAGC chrX:5618718-5618838 4 5.47e-06 GTA GGCGGCGA ATAATTAAGG chr3R:13222213-13222333 67 1.10e-05 AACGCAGTTG GCCGGCGA AAGCCTGTCC chr2L:5084664-5084784 17 1.10e-05 GAACTAAGAC GCCGGCGA CTTTGACGAT chr3L:12459607-12459727 22 1.10e-05 TCAATTAGCT GCCGGCGA AGTTGGGATA chr3L:13228004-13228124 86 1.49e-05 ATTAGCTGTG GGCGGCGG AAGTACGACA chr2L:11961570-11961690 71 1.49e-05 TAGCAGGTCC GGCGGCGG GAACTGGAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGGCGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5065715-5065835 5.5e-06 101_[+3]_11 chr2L:11807455-11807575 5.5e-06 80_[+3]_32 chr2L:392670-392790 5.5e-06 38_[+3]_74 chrX:5618718-5618838 5.5e-06 3_[+3]_109 chr3R:13222213-13222333 1.1e-05 66_[+3]_46 chr2L:5084664-5084784 1.1e-05 16_[+3]_96 chr3L:12459607-12459727 1.1e-05 21_[+3]_91 chr3L:13228004-13228124 1.5e-05 85_[+3]_27 chr2L:11961570-11961690 1.5e-05 70_[+3]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGGCGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSCGGCGA width=8 seqs=9 chr3R:5065715-5065835 ( 102) GGCGGCGA 1 chr2L:11807455-11807575 ( 81) GGCGGCGA 1 chr2L:392670-392790 ( 39) GGCGGCGA 1 chrX:5618718-5618838 ( 4) GGCGGCGA 1 chr3R:13222213-13222333 ( 67) GCCGGCGA 1 chr2L:5084664-5084784 ( 17) GCCGGCGA 1 chr3L:12459607-12459727 ( 22) GCCGGCGA 1 chr3L:13228004-13228124 ( 86) GGCGGCGG 1 chr2L:11961570-11961690 ( 71) GGCGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGGCGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4638 E= 2.5e+004 -982 -982 224 -982 -982 66 166 -982 -982 224 -982 -982 -982 -982 224 -982 -982 -982 224 -982 -982 224 -982 -982 -982 -982 224 -982 142 -982 7 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGGCGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.5e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.777778 0.000000 0.222222 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGGCGA MEME-3 regular expression -------------------------------------------------------------------------------- G[GC]CGGCG[AG] -------------------------------------------------------------------------------- Time 18.79 secs. ******************************************************************************** ******************************************************************************** MOTIF YGATAAGS MEME-4 width = 8 sites = 19 llr = 178 E-value = 5.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGATAAGS MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1:a:aa:: pos.-specific C 4::::::6 probability G :a::::a4 matrix T 5::a:::: bits 2.2 * * 2.0 * * 1.8 ****** 1.6 ****** Relative 1.3 ******* Entropy 1.1 ******* (13.5 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGATAAGC consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATAAGS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:15741076-15741196 62 1.41e-05 AATTAAGCAT CGATAAGC CATGTTTTTC chr3L:4319305-4319425 3 1.41e-05 CC CGATAAGC GGGCCACGCT chr2L:8371082-8371202 84 1.41e-05 AATTTTCCCC CGATAAGC CGGAATATAA chr2L:14673793-14673913 51 1.41e-05 GAGCCAGATC CGATAAGC TCGTCCGTCC chr2R:6770320-6770440 39 1.41e-05 TTCCGCCCGT CGATAAGC GACTTACGCT chr2R:18602473-18602593 107 3.31e-05 TCAAATTCAG TGATAAGC TTCCCG chr3L:6615351-6615471 102 3.31e-05 GCCAATTGAC TGATAAGC GGGCCAATGA chr3L:10088595-10088715 61 3.31e-05 TTTATTGGAT TGATAAGC CCCTAATGGT chr2R:21721503-21721623 68 3.31e-05 TTTATGAAGC TGATAAGC AGCACCCACC chr2R:9601992-9602112 69 4.72e-05 TTGAAGTGTC CGATAAGG GAACGAAAAT chrX:10370428-10370548 28 4.72e-05 CCACGCTGGG CGATAAGG CAATCAGCCG chrX:16572709-16572829 41 4.72e-05 TGACATTCGT CGATAAGG TAATTGGCCT chr2R:21611363-21611483 100 6.61e-05 GAGTTCGTGG TGATAAGG TGGCGGTAAA chr2L:6224939-6225059 50 6.61e-05 CGAAGTGGTT TGATAAGG CTTATCTGAG chr3L:19225732-19225852 64 6.61e-05 GAGTTGAAGA TGATAAGG AGCGATCAAA chr3L:8452394-8452514 44 6.61e-05 ATTAGATCGA TGATAAGG CTTACACATA chrX:10762722-10762842 19 6.61e-05 TCACTAGCAC TGATAAGG GGATAAGTTC chr2L:15065705-15065825 38 8.55e-05 GCATAGTCAC AGATAAGC CGACAGTAGC chrX:13741279-13741399 76 8.55e-05 TTTCTCAACC AGATAAGC TTGATTTTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATAAGS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:15741076-15741196 1.4e-05 61_[+4]_51 chr3L:4319305-4319425 1.4e-05 2_[+4]_110 chr2L:8371082-8371202 1.4e-05 83_[+4]_29 chr2L:14673793-14673913 1.4e-05 50_[+4]_62 chr2R:6770320-6770440 1.4e-05 38_[+4]_74 chr2R:18602473-18602593 3.3e-05 106_[+4]_6 chr3L:6615351-6615471 3.3e-05 101_[+4]_11 chr3L:10088595-10088715 3.3e-05 60_[+4]_52 chr2R:21721503-21721623 3.3e-05 67_[+4]_45 chr2R:9601992-9602112 4.7e-05 68_[+4]_44 chrX:10370428-10370548 4.7e-05 27_[+4]_85 chrX:16572709-16572829 4.7e-05 40_[+4]_72 chr2R:21611363-21611483 6.6e-05 99_[+4]_13 chr2L:6224939-6225059 6.6e-05 49_[+4]_63 chr3L:19225732-19225852 6.6e-05 63_[+4]_49 chr3L:8452394-8452514 6.6e-05 43_[+4]_69 chrX:10762722-10762842 6.6e-05 18_[+4]_94 chr2L:15065705-15065825 8.5e-05 37_[+4]_75 chrX:13741279-13741399 8.5e-05 75_[+4]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATAAGS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGATAAGS width=8 seqs=19 chr3L:15741076-15741196 ( 62) CGATAAGC 1 chr3L:4319305-4319425 ( 3) CGATAAGC 1 chr2L:8371082-8371202 ( 84) CGATAAGC 1 chr2L:14673793-14673913 ( 51) CGATAAGC 1 chr2R:6770320-6770440 ( 39) CGATAAGC 1 chr2R:18602473-18602593 ( 107) TGATAAGC 1 chr3L:6615351-6615471 ( 102) TGATAAGC 1 chr3L:10088595-10088715 ( 61) TGATAAGC 1 chr2R:21721503-21721623 ( 68) TGATAAGC 1 chr2R:9601992-9602112 ( 69) CGATAAGG 1 chrX:10370428-10370548 ( 28) CGATAAGG 1 chrX:16572709-16572829 ( 41) CGATAAGG 1 chr2R:21611363-21611483 ( 100) TGATAAGG 1 chr2L:6224939-6225059 ( 50) TGATAAGG 1 chr3L:19225732-19225852 ( 64) TGATAAGG 1 chr3L:8452394-8452514 ( 44) TGATAAGG 1 chrX:10762722-10762842 ( 19) TGATAAGG 1 chr2L:15065705-15065825 ( 38) AGATAAGC 1 chrX:13741279-13741399 ( 76) AGATAAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATAAGS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.90672 E= 5.0e+004 -146 99 -1089 73 -1089 -1089 224 -1089 178 -1089 -1089 -1089 -1089 -1089 -1089 180 178 -1089 -1089 -1089 178 -1089 -1089 -1089 -1089 -1089 224 -1089 -1089 145 99 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATAAGS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 5.0e+004 0.105263 0.421053 0.000000 0.473684 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.578947 0.421053 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATAAGS MEME-4 regular expression -------------------------------------------------------------------------------- [TC]GATAAG[CG] -------------------------------------------------------------------------------- Time 24.45 secs. ******************************************************************************** ******************************************************************************** MOTIF CCSCCGCC MEME-5 width = 8 sites = 13 llr = 130 E-value = 1.3e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCSCCGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::2::::: pos.-specific C 8a39a2aa probability G ::51:8:: matrix T 2::::::: bits 2.2 * * ** 2.0 * * ** 1.8 * ** ** 1.6 * ***** Relative 1.3 ** ***** Entropy 1.1 ** ***** (14.4 bits) 0.9 ** ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCGCC consensus T C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3057963-3058083 90 4.04e-06 GAACACGCGT CCGCCGCC GATCAAACAT chr3L:16291813-16291933 20 4.04e-06 CGATTTATTA CCGCCGCC AACAAAGCCA chr2L:12593545-12593665 31 8.10e-06 ATGCCTGCCA CCCCCGCC ACGCCCTTTA chr2L:5084664-5084784 84 8.10e-06 TAATTTAACC CCCCCGCC CCAGCGAACA chr3R:10514909-10515029 20 1.22e-05 GACAGGCGAC CCGCCCCC TTAACCCCTA chr3R:16446935-16447055 84 1.22e-05 AGCGATAACC CCGCCCCC CTGCCATCGA chr3R:27071317-27071437 69 1.76e-05 AGCCCGCCAG TCGCCGCC TTGGAGCGTG chr3L:11378569-11378689 70 1.76e-05 GTAGTCGCCT TCGCCGCC CAAATTATAT chr2R:21721503-21721623 81 2.32e-05 TAAGCAGCAC CCACCGCC CTGCTTATCA chr3R:14630263-14630383 5 2.32e-05 TCAC CCACCGCC CACTTGCCGG chr2R:15833216-15833336 22 2.73e-05 TCATTTGCTG CCCCCCCC GCAGATCAAT chr3R:26892026-26892146 10 3.27e-05 TACCATTTT TCCCCGCC CACTATTTAT chr3L:19777345-19777465 46 3.68e-05 AGCTAATTAC CCGGCGCC TCCGACTCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3057963-3058083 4e-06 89_[+5]_23 chr3L:16291813-16291933 4e-06 19_[+5]_93 chr2L:12593545-12593665 8.1e-06 30_[+5]_82 chr2L:5084664-5084784 8.1e-06 83_[+5]_29 chr3R:10514909-10515029 1.2e-05 19_[+5]_93 chr3R:16446935-16447055 1.2e-05 83_[+5]_29 chr3R:27071317-27071437 1.8e-05 68_[+5]_44 chr3L:11378569-11378689 1.8e-05 69_[+5]_43 chr2R:21721503-21721623 2.3e-05 80_[+5]_32 chr3R:14630263-14630383 2.3e-05 4_[+5]_108 chr2R:15833216-15833336 2.7e-05 21_[+5]_91 chr3R:26892026-26892146 3.3e-05 9_[+5]_103 chr3L:19777345-19777465 3.7e-05 45_[+5]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCSCCGCC width=8 seqs=13 chr2L:3057963-3058083 ( 90) CCGCCGCC 1 chr3L:16291813-16291933 ( 20) CCGCCGCC 1 chr2L:12593545-12593665 ( 31) CCCCCGCC 1 chr2L:5084664-5084784 ( 84) CCCCCGCC 1 chr3R:10514909-10515029 ( 20) CCGCCCCC 1 chr3R:16446935-16447055 ( 84) CCGCCCCC 1 chr3R:27071317-27071437 ( 69) TCGCCGCC 1 chr3L:11378569-11378689 ( 70) TCGCCGCC 1 chr2R:21721503-21721623 ( 81) CCACCGCC 1 chr3R:14630263-14630383 ( 5) CCACCGCC 1 chr2R:15833216-15833336 ( 22) CCCCCCCC 1 chr3R:26892026-26892146 ( 10) TCCCCGCC 1 chr3L:19777345-19777465 ( 46) CCGGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 1.3e+005 -1035 186 -1035 -31 -1035 224 -1035 -1035 -92 54 135 -1035 -1035 212 -146 -1035 -1035 224 -1035 -1035 -1035 12 186 -1035 -1035 224 -1035 -1035 -1035 224 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.3e+005 0.000000 0.769231 0.000000 0.230769 0.000000 1.000000 0.000000 0.000000 0.153846 0.307692 0.538462 0.000000 0.000000 0.923077 0.076923 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.230769 0.769231 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCGCC MEME-5 regular expression -------------------------------------------------------------------------------- [CT]C[GC]CC[GC]CC -------------------------------------------------------------------------------- Time 30.08 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16994948-16995068 7.14e-02 120 chr2L:6073996-6074116 3.10e-01 58_[+1(4.49e-05)]_54 chrX:3356435-3356555 8.36e-02 120 chrX:5618718-5618838 1.30e-04 3_[+3(5.47e-06)]_16_[+1(4.49e-05)]_\ 85 chr3L:11015340-11015460 3.58e-02 78_[+1(7.02e-05)]_34 chr2L:6236631-6236751 1.59e-02 80_[+2(2.58e-05)]_32 chrX:5718115-5718235 2.61e-01 120 chr3R:25060584-25060704 1.99e-01 28_[+1(4.49e-05)]_84 chrX:10762722-10762842 1.22e-02 18_[+4(6.61e-05)]_24_[+1(7.02e-05)]_\ 62 chr2L:8480947-8481067 1.60e-02 54_[+1(2.58e-05)]_58 chr3R:22396396-22396516 2.85e-02 43_[+2(2.58e-05)]_69 chr2R:23727478-23727598 1.03e-03 52_[+2(2.58e-05)]_27_[+5(7.99e-05)]_\ 25 chr2L:13552781-13552901 6.35e-04 24_[+1(2.58e-05)]_88 chr3L:20410902-20411022 1.90e-01 72_[+1(4.49e-05)]_40 chr2R:12597176-12597296 1.29e-01 120 chr2R:9268696-9268816 1.53e-02 65_[+2(2.58e-05)]_47 chr3L:21201390-21201510 6.59e-02 88_[+1(4.49e-05)]_24 chr2R:15917360-15917480 4.82e-02 60_[+2(6.32e-05)]_52 chr3L:8452394-8452514 2.50e-03 43_[+4(6.61e-05)]_69 chrX:16309902-16310022 3.92e-03 70_[+1(7.02e-05)]_42 chrX:1120401-1120521 5.44e-04 46_[+1(2.58e-05)]_66 chr3R:16501175-16501295 1.09e-02 29_[+2(6.32e-05)]_83 chr3R:11172537-11172657 4.34e-04 39_[+1(4.49e-05)]_73 chr2R:15833216-15833336 2.28e-03 21_[+5(2.73e-05)]_50_[+1(2.58e-05)]_\ 33 chr2R:6963326-6963446 8.42e-01 120 chr3L:15704900-15705020 2.62e-01 120 chr2L:19096416-19096536 4.45e-01 120 chr3L:13065725-13065845 7.15e-03 60_[+1(2.58e-05)]_52 chr3R:18398106-18398226 4.45e-02 28_[+1(2.58e-05)]_84 chr3R:16071835-16071955 8.83e-03 55_[+1(2.58e-05)]_57 chr3L:1580040-1580160 5.75e-02 28_[+2(2.58e-05)]_84 chr3R:22330695-22330815 1.75e-03 22_[+1(2.58e-05)]_90 chr2L:11961570-11961690 6.76e-04 56_[+2(2.58e-05)]_6_[+3(1.49e-05)]_\ 42 chr3L:13877134-13877254 2.26e-03 73_[+1(2.58e-05)]_39 chr3R:30345594-30345714 1.39e-01 88_[+2(2.58e-05)]_24 chr2R:7655311-7655431 2.22e-02 78_[+1(7.02e-05)]_34 chr3R:14630263-14630383 5.17e-04 4_[+5(2.32e-05)]_25_[+1(2.58e-05)]_\ 75 chr3R:30431373-30431493 5.34e-03 120 chr2L:392670-392790 4.60e-05 38_[+3(5.47e-06)]_43_[+2(2.58e-05)]_\ 23 chr2R:12926126-12926246 2.74e-04 60_[+2(2.58e-05)]_52 chr2L:16494239-16494359 3.73e-02 49_[+2(2.58e-05)]_63 chrX:899523-899643 1.87e-02 9_[+1(2.58e-05)]_103 chr3L:12078701-12078821 2.32e-01 120 chr3R:15451608-15451728 3.70e-01 120 chr2R:24082711-24082831 7.90e-02 120 chr3R:24926946-24927066 1.44e-01 16_[+2(2.58e-05)]_96 chr2R:16571464-16571584 2.34e-01 120 chr3R:16446935-16447055 9.01e-05 44_[+1(7.02e-05)]_31_[+5(1.22e-05)]_\ 29 chr3R:25660045-25660165 7.51e-02 3_[+1(8.94e-05)]_65_[+1(2.58e-05)]_\ 36 chrX:15496879-15496999 2.35e-01 69_[+1(2.58e-05)]_43 chr2R:21721503-21721623 1.62e-03 67_[+4(3.31e-05)]_5_[+5(2.32e-05)]_\ 32 chr3R:5517974-5518094 6.27e-04 51_[+1(2.58e-05)]_61 chr3L:19225732-19225852 6.57e-03 12_[+2(6.32e-05)]_43_[+4(6.61e-05)]_\ 49 chr3L:9209869-9209989 5.45e-02 64_[+2(6.32e-05)]_48 chr2L:15339729-15339849 9.79e-01 120 chr3R:10514909-10515029 2.86e-03 19_[+5(1.22e-05)]_93 chr2R:16721204-16721324 7.86e-02 120 chr3R:27681944-27682064 5.17e-02 120 chr3R:13231369-13231489 4.19e-03 18_[+2(2.58e-05)]_94 chr3L:10088595-10088715 3.81e-03 60_[+4(3.31e-05)]_52 chrX:2199502-2199622 1.14e-01 120 chr3L:18686606-18686726 3.39e-01 120 chrX:5289813-5289933 1.40e-01 41_[+1(7.02e-05)]_71 chr2R:24328234-24328354 4.17e-02 26_[+2(6.32e-05)]_86 chr3L:6804202-6804322 1.70e-01 120 chr2L:20869467-20869587 3.44e-02 67_[+1(8.94e-05)]_45 chr3L:8078060-8078180 9.60e-01 120 chr3L:1200826-1200946 9.76e-02 120 chr3R:9127361-9127481 8.62e-01 120 chrM:5683-5803 9.01e-01 120 chrX:13741279-13741399 6.58e-02 75_[+4(8.55e-05)]_37 chr2R:20123616-20123736 9.14e-03 120 chr3R:10098445-10098565 2.93e-01 120 chr2L:6224939-6225059 1.18e-02 49_[+4(6.61e-05)]_63 chr3L:7938749-7938869 3.98e-02 120 chr2L:20772369-20772489 4.47e-04 21_[+1(4.49e-05)]_91 chr2R:21389820-21389940 1.30e-02 63_[+1(7.02e-05)]_49 chr3R:28899308-28899428 6.67e-02 73_[+1(4.49e-05)]_39 chrX:1050728-1050848 2.57e-01 120 chr3R:24799664-24799784 8.12e-03 13_[+1(4.49e-05)]_99 chrX:17698034-17698154 3.02e-03 33_[+1(4.49e-05)]_79 chr2R:22845215-22845335 4.68e-03 62_[+2(6.32e-05)]_50 chr2L:20322399-20322519 4.82e-01 120 chr2L:15609294-15609414 6.56e-02 81_[+1(4.49e-05)]_31 chr2L:14374114-14374234 4.28e-02 66_[+2(2.58e-05)]_46 chr3L:14347387-14347507 6.87e-01 120 chr3R:23460735-23460855 1.22e-02 9_[+1(8.94e-05)]_103 chr3L:13228004-13228124 4.70e-05 71_[+1(2.58e-05)]_6_[+3(1.49e-05)]_\ 27 chr3L:12459607-12459727 3.48e-03 21_[+3(1.10e-05)]_91 chr3L:18634847-18634967 8.87e-02 43_[+1(4.49e-05)]_69 chr3L:8029016-8029136 1.22e-03 59_[+1(2.58e-05)]_53 chr3R:26892026-26892146 7.65e-05 9_[+5(3.27e-05)]_71_[+2(2.58e-05)]_\ 24 chr3L:6342688-6342808 1.05e-01 2_[+1(7.02e-05)]_110 chr3R:16237452-16237572 1.07e-01 26_[+1(2.58e-05)]_86 chr2R:8636160-8636280 1.01e-01 120 chr3R:23139116-23139236 1.94e-01 72_[+1(8.94e-05)]_40 chr2R:6770320-6770440 2.42e-05 38_[+4(1.41e-05)]_30_[+1(2.58e-05)]_\ 36 chr3R:20975513-20975633 2.09e-01 120 chr3R:31306662-31306782 3.32e-01 120 chr2L:6178189-6178309 1.66e-03 49_[+2(6.32e-05)]_63 chr2R:16882682-16882802 1.06e-02 120 chr3R:9028804-9028924 1.22e-02 52_[+2(2.58e-05)]_60 chr3R:13913420-13913540 1.62e-01 14_[+1(2.58e-05)]_98 chr3L:12079760-12079880 5.38e-01 120 chr2R:17080938-17081058 5.34e-01 120 chr3R:16284990-16285110 1.73e-01 49_[+1(8.94e-05)]_63 chr3R:13734623-13734743 3.79e-02 13_[+2(6.32e-05)]_99 chr3R:16273627-16273747 5.66e-04 60_[+1(2.58e-05)]_52 chr2R:5682500-5682620 2.65e-03 120 chr2R:18372607-18372727 2.20e-02 40_[+2(2.58e-05)]_72 chr2R:22237241-22237361 6.63e-01 120 chr3L:11547715-11547835 6.57e-02 55_[+1(2.58e-05)]_57 chrX:580892-581012 2.52e-02 70_[+2(6.32e-05)]_42 chr2R:13836721-13836841 2.47e-01 120 chr3R:21887065-21887185 1.03e-02 40_[+2(2.58e-05)]_72 chr3L:3351128-3351248 1.91e-01 120 chr2R:14492645-14492765 7.22e-03 44_[+2(2.58e-05)]_43_[+2(2.58e-05)]_\ 17 chr2R:12645505-12645625 4.66e-03 51_[+2(2.58e-05)]_34_[+1(2.58e-05)]_\ 19 chrX:10740208-10740328 1.67e-01 57_[+2(2.58e-05)]_55 chr3R:15090287-15090407 8.12e-02 120 chr3L:20837712-20837832 7.24e-03 71_[+1(4.49e-05)]_41 chr2R:19395008-19395128 1.62e-02 120 chr2R:8058458-8058578 2.95e-02 86_[+1(7.02e-05)]_26 chr3L:11690322-11690442 2.82e-02 16_[+1(4.49e-05)]_96 chr3R:29111930-29112050 2.26e-02 120 chr3R:5306018-5306138 5.49e-03 52_[+2(6.32e-05)]_60 chr2R:14001902-14002022 1.41e-02 57_[+2(2.58e-05)]_55 chr3R:27699708-27699828 5.15e-01 120 chr3R:20006726-20006846 1.78e-01 120 chr2L:9121671-9121791 1.36e-02 30_[+1(2.58e-05)]_28_[+1(2.58e-05)]_\ 46 chr2L:17741301-17741421 9.68e-02 57_[+1(8.94e-05)]_55 chr3R:16246732-16246852 4.54e-02 120 chr3R:8711923-8712043 9.78e-01 120 chr3L:8300174-8300294 6.04e-01 120 chr2R:17442806-17442926 7.54e-01 120 chr3R:4804157-4804277 7.70e-01 120 chr2L:14673793-14673913 5.91e-03 50_[+4(1.41e-05)]_62 chr3L:11717380-11717500 2.93e-02 120 chrX:17123359-17123479 4.38e-01 120 chr3L:2144329-2144449 6.66e-01 120 chr2L:12421939-12422059 2.62e-02 120 chr3L:19902680-19902800 9.85e-02 52_[+1(8.94e-05)]_60 chr2L:4995910-4996030 2.81e-01 120 chr3L:20616388-20616508 1.74e-01 120 chr3L:6615351-6615471 4.86e-03 101_[+4(3.31e-05)]_11 chr3L:10862492-10862612 4.75e-03 109_[+1(2.58e-05)]_3 chr3L:20548602-20548722 3.70e-02 14_[+2(2.58e-05)]_98 chr3R:16081339-16081459 6.20e-02 120 chrX:19294105-19294225 3.38e-02 37_[+1(7.02e-05)]_75 chr3R:12405173-12405293 2.11e-01 120 chr2R:18349350-18349470 7.14e-02 120 chr2L:5084664-5084784 2.98e-05 16_[+3(1.10e-05)]_47_[+1(7.02e-05)]_\ 4_[+5(8.10e-06)]_29 chrX:16572709-16572829 3.25e-03 40_[+4(4.72e-05)]_[+2(6.32e-05)]_64 chr3L:4460498-4460618 3.52e-01 120 chr2R:11507499-11507619 1.66e-01 120 chrX:13735775-13735895 3.69e-03 58_[+1(4.49e-05)]_54 chrX:22634188-22634308 1.14e-02 120 chr2L:14398657-14398777 3.81e-01 120 chr3L:19872595-19872715 3.39e-02 120 chr2R:12262176-12262296 9.34e-02 33_[+1(2.58e-05)]_79 chr3L:7263492-7263612 7.83e-02 120 chr3R:18196770-18196890 3.04e-02 82_[+2(6.32e-05)]_30 chrX:4702245-4702365 3.71e-01 120 chr3L:19777345-19777465 4.10e-04 36_[+1(2.58e-05)]_1_[+5(3.68e-05)]_\ 67 chr3L:811703-811823 7.18e-02 89_[+1(2.58e-05)]_23 chr3R:13222213-13222333 2.07e-02 66_[+3(1.10e-05)]_46 chrX:3057978-3058098 2.02e-01 120 chr2L:11738871-11738991 3.47e-03 42_[+2(6.32e-05)]_70 chr3L:2388803-2388923 1.22e-01 120 chr2R:18602473-18602593 1.19e-03 106_[+4(3.31e-05)]_6 chr2L:3308162-3308282 2.01e-01 120 chr3L:15538949-15539069 2.11e-02 48_[+2(6.32e-05)]_64 chr2L:15065705-15065825 5.30e-02 37_[+4(8.55e-05)]_75 chr3L:12057763-12057883 8.21e-02 120 chrX:10370428-10370548 2.41e-04 27_[+4(4.72e-05)]_85 chr2L:11229778-11229898 4.27e-02 4_[+1(7.02e-05)]_108 chr2R:9107003-9107123 3.06e-02 120 chr3L:8073475-8073595 1.96e-02 15_[+2(6.32e-05)]_97 chr3L:12392890-12393010 2.39e-01 120 chr3R:25550504-25550624 3.32e-01 120 chr2R:13918412-13918532 1.04e-01 120 chr2R:20137936-20138056 1.47e-02 63_[+2(2.58e-05)]_49 chr3L:19340623-19340743 9.43e-01 120 chr3L:19258352-19258472 1.78e-01 120 chr2R:16019748-16019868 7.97e-01 120 chr2L:17472743-17472863 5.67e-02 5_[+1(4.49e-05)]_107 chr3L:439618-439738 2.68e-02 112_[+2(2.58e-05)] chrX:15333661-15333781 1.27e-01 100_[+1(7.02e-05)]_12 chr2R:9601992-9602112 2.29e-03 68_[+4(4.72e-05)]_44 chr2R:22590702-22590822 3.81e-03 72_[+2(2.58e-05)]_40 chr2R:10130280-10130400 5.92e-02 120 chr2L:12593545-12593665 6.13e-04 30_[+5(8.10e-06)]_12_[+1(2.58e-05)]_\ 10_[+1(2.58e-05)]_44 chrX:17587809-17587929 1.42e-01 120 chr2R:21611363-21611483 2.48e-03 44_[+2(6.32e-05)]_47_[+4(6.61e-05)]_\ 13 chr3L:3787471-3787591 9.92e-01 120 chr2L:8104195-8104315 1.12e-01 120 chr3L:21935847-21935967 3.52e-01 120 chr2R:11341599-11341719 1.08e-01 120 chr3R:23939151-23939271 2.57e-01 120 chr3L:16957658-16957778 1.55e-02 55_[+2(2.58e-05)]_57 chr3R:17948665-17948785 2.60e-01 120 chr3L:780851-780971 2.57e-01 120 chrX:8140911-8141031 3.13e-02 58_[+2(6.32e-05)]_54 chr3R:10045511-10045631 1.63e-02 61_[+1(4.49e-05)]_51 chr2R:21548526-21548646 1.52e-02 81_[+2(6.32e-05)]_31 chr2R:17737119-17737239 5.20e-03 66_[+1(2.58e-05)]_46 chr3L:10954014-10954134 5.12e-02 10_[+2(2.58e-05)]_102 chr3L:15695325-15695445 1.27e-01 120 chr2L:8371082-8371202 5.92e-04 70_[+1(7.02e-05)]_5_[+4(1.41e-05)]_\ 29 chrX:246242-246362 4.80e-02 68_[+1(8.94e-05)]_44 chr3R:16272696-16272816 3.90e-02 120 chr2L:8570596-8570716 2.78e-01 120 chr3R:30062583-30062703 3.08e-02 27_[+1(4.49e-05)]_85 chr2R:17086981-17087101 4.50e-01 120 chr2L:10754722-10754842 1.04e-01 96_[+1(7.02e-05)]_16 chr3L:11378569-11378689 5.72e-03 69_[+5(1.76e-05)]_43 chr3L:15692369-15692489 1.49e-01 120 chr3R:9591912-9592032 5.82e-01 120 chr3L:4319305-4319425 3.48e-02 2_[+4(1.41e-05)]_110 chr3L:17616024-17616144 2.52e-01 120 chr3L:20387564-20387684 6.49e-01 120 chr3R:23161620-23161740 3.12e-02 62_[+2(2.58e-05)]_50 chr3L:16291813-16291933 2.40e-04 19_[+5(4.04e-06)]_93 chr2L:11807455-11807575 5.00e-03 80_[+3(5.47e-06)]_32 chrX:18492130-18492250 1.96e-02 18_[+2(6.32e-05)]_94 chr2L:20265041-20265161 1.22e-01 120 chr2R:19462901-19463021 9.92e-01 120 chr3L:446005-446125 8.82e-01 120 chr3R:23091704-23091824 9.43e-02 120 chr2R:20975303-20975423 4.78e-02 66_[+1(2.58e-05)]_46 chr2L:7533963-7534083 7.72e-02 120 chr2L:3057963-3058083 3.11e-04 89_[+5(4.04e-06)]_23 chr3L:11684966-11685086 9.61e-02 110_[+2(2.58e-05)]_2 chr3R:5065715-5065835 7.13e-04 101_[+3(5.47e-06)]_11 chr3L:17003960-17004080 4.05e-04 47_[+2(6.32e-05)]_65 chr3L:15741076-15741196 3.67e-03 61_[+4(1.41e-05)]_51 chr2L:7284364-7284484 1.96e-02 46_[+2(2.58e-05)]_66 chr3R:10053667-10053787 1.85e-01 120 chr3R:27071317-27071437 5.70e-03 68_[+5(1.76e-05)]_44 chr2R:9610483-9610603 7.01e-03 120 chr3L:16985756-16985876 1.06e-02 73_[+2(6.32e-05)]_39 chr2L:20069807-20069927 1.97e-01 120 chr3R:26120013-26120133 1.95e-02 13_[+2(2.58e-05)]_99 chr3L:1742336-1742456 2.12e-04 53_[+1(7.02e-05)]_59 chr3L:16877210-16877330 8.58e-02 16_[+3(4.32e-05)]_96 chr3R:4814831-4814951 4.10e-01 120 chr2R:21550003-21550123 1.55e-02 58_[+1(2.58e-05)]_54 chr3R:16092193-16092313 1.13e-02 11_[+1(2.58e-05)]_101 chr2R:8458094-8458214 3.66e-01 120 chr3L:9425803-9425923 2.30e-01 110_[+1(2.58e-05)]_2 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n02.farnam.hpc.yale.internal ********************************************************************************