******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Usf.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:5592298-5592418 1.0000 120 chr3L:21539763-21539883 1.0000 120 chr2R:9207476-9207596 1.0000 120 chr2R:15542558-15542678 1.0000 120 chr3R:15547929-15548049 1.0000 120 chr2R:15680030-15680150 1.0000 120 chr2R:4188133-4188253 1.0000 120 chr3L:7867502-7867622 1.0000 120 chrX:3880949-3881069 1.0000 120 chr3R:14894467-14894587 1.0000 120 chr3R:14903987-14904107 1.0000 120 chr3R:14308876-14308996 1.0000 120 chr3L:11535032-11535152 1.0000 120 chr3L:18225117-18225237 1.0000 120 chrX:15890367-15890487 1.0000 120 chr3L:14613774-14613894 1.0000 120 chr3L:7510849-7510969 1.0000 120 chr3R:4732350-4732470 1.0000 120 chr3L:17948843-17948963 1.0000 120 chr2L:13905433-13905553 1.0000 120 chr3R:27826327-27826447 1.0000 120 chr3R:16241932-16242052 1.0000 120 chr3R:18438830-18438950 1.0000 120 chrX:13676709-13676829 1.0000 120 chr4:1030916-1031036 1.0000 120 chr3R:10626152-10626272 1.0000 120 chr3L:6059219-6059339 1.0000 120 chrX:3403554-3403674 1.0000 120 chr3R:17049008-17049128 1.0000 120 chr2L:7295115-7295235 1.0000 120 chr2R:20270943-20271063 1.0000 120 chr2R:22886148-22886268 1.0000 120 chrX:17226784-17226904 1.0000 120 chr2R:16660178-16660298 1.0000 120 chrX:8196307-8196427 1.0000 120 chrX:7166484-7166604 1.0000 120 chr3R:8349628-8349748 1.0000 120 chr3L:19261179-19261299 1.0000 120 chr3L:20612984-20613104 1.0000 120 chr3R:6665431-6665551 1.0000 120 chrX:15453222-15453342 1.0000 120 chr2L:21196688-21196808 1.0000 120 chr3L:908604-908724 1.0000 120 chr3R:29772480-29772600 1.0000 120 chr2L:3058788-3058908 1.0000 120 chr3R:23300811-23300931 1.0000 120 chr3L:19674494-19674614 1.0000 120 chr3R:27205062-27205182 1.0000 120 chr4:709875-709995 1.0000 120 chr2R:18799983-18800103 1.0000 120 chr2L:18871974-18872094 1.0000 120 chr3L:17949858-17949978 1.0000 120 chr2R:21662446-21662566 1.0000 120 chr2L:12700701-12700821 1.0000 120 chr3L:27267086-27267206 1.0000 120 chrX:12496964-12497084 1.0000 120 chr3L:10847916-10848036 1.0000 120 chr2L:10683085-10683205 1.0000 120 chr3R:6791163-6791283 1.0000 120 chr2L:1629717-1629837 1.0000 120 chr3R:29550127-29550247 1.0000 120 chrX:3367434-3367554 1.0000 120 chrX:7556357-7556477 1.0000 120 chr3L:18402700-18402820 1.0000 120 chr3R:5861527-5861647 1.0000 120 chr3L:5630318-5630438 1.0000 120 chr3R:31704597-31704717 1.0000 120 chr3R:27988622-27988742 1.0000 120 chrX:10601818-10601938 1.0000 120 chr3L:26014180-26014300 1.0000 120 chr3L:1414131-1414251 1.0000 120 chr3R:22566609-22566729 1.0000 120 chrX:7703074-7703194 1.0000 120 chrX:4574160-4574280 1.0000 120 chr3R:21834408-21834528 1.0000 120 chr3R:6949387-6949507 1.0000 120 chr3L:15847877-15847997 1.0000 120 chr3R:14894671-14894791 1.0000 120 chr2L:16727706-16727826 1.0000 120 chr3R:19935393-19935513 1.0000 120 chr2L:19233455-19233575 1.0000 120 chr2L:6819476-6819596 1.0000 120 chr3R:12443316-12443436 1.0000 120 chr3R:27153528-27153648 1.0000 120 chr2R:6133627-6133747 1.0000 120 chr2R:11602036-11602156 1.0000 120 chr2L:6967827-6967947 1.0000 120 chrX:17780403-17780523 1.0000 120 chr2R:14645057-14645177 1.0000 120 chr3L:13356184-13356304 1.0000 120 chr2R:7490214-7490334 1.0000 120 chrX:9584820-9584940 1.0000 120 chr2L:14376970-14377090 1.0000 120 chr3L:18272331-18272451 1.0000 120 chr2L:20327528-20327648 1.0000 120 chr3L:4254552-4254672 1.0000 120 chr3R:15472786-15472906 1.0000 120 chr3R:13446604-13446724 1.0000 120 chr3R:24544431-24544551 1.0000 120 chr3R:16907899-16908019 1.0000 120 chr2R:11197759-11197879 1.0000 120 chrX:18404966-18405086 1.0000 120 chr2L:11189223-11189343 1.0000 120 chr2L:11066009-11066129 1.0000 120 chr3R:20950318-20950438 1.0000 120 chr4:570964-571084 1.0000 120 chrX:13391303-13391423 1.0000 120 chr3R:5660219-5660339 1.0000 120 chrX:3288906-3289026 1.0000 120 chr3L:17352924-17353044 1.0000 120 chrX:17830351-17830471 1.0000 120 chr3L:22910110-22910230 1.0000 120 chr2L:9996693-9996813 1.0000 120 chr3L:22277393-22277513 1.0000 120 chr3L:6981960-6982080 1.0000 120 chr2L:11199178-11199298 1.0000 120 chr3L:11322618-11322738 1.0000 120 chr2L:19219565-19219685 1.0000 120 chr2R:11176332-11176452 1.0000 120 chr3L:16165796-16165916 1.0000 120 chr2R:7054374-7054494 1.0000 120 chr3L:8526303-8526423 1.0000 120 chrX:457994-458114 1.0000 120 chrX:15043907-15044027 1.0000 120 chr3L:6969192-6969312 1.0000 120 chr2R:13015199-13015319 1.0000 120 chr3L:1151764-1151884 1.0000 120 chr2L:6088994-6089114 1.0000 120 chr2R:11204363-11204483 1.0000 120 chr2R:22690301-22690421 1.0000 120 chr2R:10899030-10899150 1.0000 120 chr3R:16209124-16209244 1.0000 120 chrX:19166625-19166745 1.0000 120 chr3R:27937959-27938079 1.0000 120 chr2L:3587412-3587532 1.0000 120 chr3L:13068385-13068505 1.0000 120 chr3R:17540127-17540247 1.0000 120 chr3L:3875203-3875323 1.0000 120 chr3R:31689852-31689972 1.0000 120 chrX:12583528-12583648 1.0000 120 chr2L:19121033-19121153 1.0000 120 chr2L:11528397-11528517 1.0000 120 chr3R:19164977-19165097 1.0000 120 chr3R:26052467-26052587 1.0000 120 chr2L:21310188-21310308 1.0000 120 chrX:5639248-5639368 1.0000 120 chr3L:19637026-19637146 1.0000 120 chr3R:11368919-11369039 1.0000 120 chr3L:10337640-10337760 1.0000 120 chr3R:12426016-12426136 1.0000 120 chr3L:15321109-15321229 1.0000 120 chr2R:9132244-9132364 1.0000 120 chr2L:19453538-19453658 1.0000 120 chrX:255358-255478 1.0000 120 chrX:17330476-17330596 1.0000 120 chr2R:20257445-20257565 1.0000 120 chr3L:11291578-11291698 1.0000 120 chr3R:25123360-25123480 1.0000 120 chr3L:11822473-11822593 1.0000 120 chr3L:699403-699523 1.0000 120 chr3L:15235302-15235422 1.0000 120 chr2L:11338399-11338519 1.0000 120 chr3L:16061055-16061175 1.0000 120 chr3L:15693162-15693282 1.0000 120 chr4:1181874-1181994 1.0000 120 chr3R:23445449-23445569 1.0000 120 chrX:13333083-13333203 1.0000 120 chr3L:6220365-6220485 1.0000 120 chr3R:21850325-21850445 1.0000 120 chr3L:20517009-20517129 1.0000 120 chrX:16102477-16102597 1.0000 120 chrX:2149673-2149793 1.0000 120 chr2R:21364861-21364981 1.0000 120 chr3L:9461745-9461865 1.0000 120 chr2L:3776017-3776137 1.0000 120 chr3L:18226083-18226203 1.0000 120 chr3R:29211199-29211319 1.0000 120 chr2L:3566714-3566834 1.0000 120 chrX:10488039-10488159 1.0000 120 chrX:14169209-14169329 1.0000 120 chr2R:22387705-22387825 1.0000 120 chr3R:9600732-9600852 1.0000 120 chr2L:8415413-8415533 1.0000 120 chr2L:14441023-14441143 1.0000 120 chr3R:5856372-5856492 1.0000 120 chr3R:18448635-18448755 1.0000 120 chr3R:29869225-29869345 1.0000 120 chr3R:30304921-30305041 1.0000 120 chr3R:9260593-9260713 1.0000 120 chr2L:18900022-18900142 1.0000 120 chrX:13634291-13634411 1.0000 120 chrX:7571342-7571462 1.0000 120 chrX:3968832-3968952 1.0000 120 chr2L:7871831-7871951 1.0000 120 chrX:7728598-7728718 1.0000 120 chr3R:8867861-8867981 1.0000 120 chrX:8445108-8445228 1.0000 120 chr3L:12037996-12038116 1.0000 120 chr2L:2176036-2176156 1.0000 120 chr2R:10077748-10077868 1.0000 120 chr3R:8207037-8207157 1.0000 120 chr3R:9055281-9055401 1.0000 120 chr2L:522876-522996 1.0000 120 chr2R:15835557-15835677 1.0000 120 chr2L:18305214-18305334 1.0000 120 chr3R:22420999-22421119 1.0000 120 chr2R:16691335-16691455 1.0000 120 chrX:19770302-19770422 1.0000 120 chr3L:8692207-8692327 1.0000 120 chr3R:18393552-18393672 1.0000 120 chr3L:18250801-18250921 1.0000 120 chr2L:19867014-19867134 1.0000 120 chrX:2146193-2146313 1.0000 120 chr3L:19000570-19000690 1.0000 120 chr3L:5857069-5857189 1.0000 120 chr2L:13205453-13205573 1.0000 120 chr2L:11950050-11950170 1.0000 120 chr3R:22625836-22625956 1.0000 120 chr3L:17659065-17659185 1.0000 120 chr3L:16165998-16166118 1.0000 120 chr2R:23577468-23577588 1.0000 120 chr2L:15743714-15743834 1.0000 120 chr3L:10784638-10784758 1.0000 120 chr3R:26117757-26117877 1.0000 120 chrX:5336832-5336952 1.0000 120 chr3L:21954666-21954786 1.0000 120 chr3L:3855296-3855416 1.0000 120 chr2L:21163366-21163486 1.0000 120 chr3R:25027641-25027761 1.0000 120 chrX:11570421-11570541 1.0000 120 chrX:13258829-13258949 1.0000 120 chr2L:21143080-21143200 1.0000 120 chrX:1907776-1907896 1.0000 120 chr2L:9598586-9598706 1.0000 120 chr3L:12644527-12644647 1.0000 120 chrX:5698189-5698309 1.0000 120 chr3R:9605161-9605281 1.0000 120 chrX:19667039-19667159 1.0000 120 chr3R:24917942-24918062 1.0000 120 chr3R:19858446-19858566 1.0000 120 chr2R:11275864-11275984 1.0000 120 chr3R:30305132-30305252 1.0000 120 chr2R:24748862-24748982 1.0000 120 chr3L:6264570-6264690 1.0000 120 chrX:5892186-5892306 1.0000 120 chrX:19663420-19663540 1.0000 120 chr3R:16355572-16355692 1.0000 120 chr2L:6830303-6830423 1.0000 120 chrX:12748428-12748548 1.0000 120 chr3L:19561906-19562026 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Usf/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Usf.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.331 C 0.166 G 0.168 T 0.335 Background letter frequencies (from file dataset with add-one prior applied): A 0.331 C 0.166 G 0.168 T 0.335 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCCVCGGC MEME-1 width = 8 sites = 13 llr = 137 E-value = 2.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCVCGGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::4::1: pos.-specific C :9a282:7 probability G a1:32893 matrix T :::1:::: bits 2.6 * * 2.3 * * 2.1 *** * * 1.8 *** **** Relative 1.6 *** **** Entropy 1.3 *** **** (15.2 bits) 1.0 *** **** 0.8 *** **** 0.5 *** **** 0.3 ******** 0.0 -------- Multilevel GCCACGGC consensus G C G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCVCGGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3880949-3881069 95 6.05e-07 GAGGGTCTGT GCCGCGGC TTCAAGTGCG chrX:5639248-5639368 99 2.39e-06 TCAGTGTAAC GCCACGGC ATCTAAGGAT chr3R:27937959-27938079 87 3.01e-06 AATCATAAGC GCCGCGGG GTGTTCTTTT chr3L:3875203-3875323 109 3.61e-06 TCAGTCTGTA GCCCCGGG CGCT chr2L:19867014-19867134 3 5.42e-06 GC GCCACGGG GGTCCTCGTT chrX:19667039-19667159 88 6.01e-06 GATCGAATGG GCCCCCGC GCGCACTGAA chr3R:5592298-5592418 58 6.01e-06 ATGTGACACG GCCCCCGC ATTGGAGCAA chr3R:30305132-30305252 58 7.18e-06 ATCGATTATG GCCACCGC AGGCTCTCCA chr2L:13205453-13205573 62 1.02e-05 CATGCCCTCC GCCTCGGC GATGGACCCC chr3L:19674494-19674614 107 1.14e-05 CCCCTGGAAA GCCAGGGC TTTGTG chr3R:19858446-19858566 32 1.44e-05 GCGGCTTTTT GGCGCGGC AGACAAAGCC chr3R:23445449-23445569 80 1.99e-05 CCAGCTATTA GCCAGGGG CTATCTCGTG chr3R:5861527-5861647 104 2.17e-05 TTGATGCGAA GCCGCGAC GTTTGATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCVCGGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3880949-3881069 6e-07 94_[+1]_18 chrX:5639248-5639368 2.4e-06 98_[+1]_14 chr3R:27937959-27938079 3e-06 86_[+1]_26 chr3L:3875203-3875323 3.6e-06 108_[+1]_4 chr2L:19867014-19867134 5.4e-06 2_[+1]_110 chrX:19667039-19667159 6e-06 87_[+1]_25 chr3R:5592298-5592418 6e-06 57_[+1]_55 chr3R:30305132-30305252 7.2e-06 57_[+1]_55 chr2L:13205453-13205573 1e-05 61_[+1]_51 chr3L:19674494-19674614 1.1e-05 106_[+1]_6 chr3R:19858446-19858566 1.4e-05 31_[+1]_81 chr3R:23445449-23445569 2e-05 79_[+1]_33 chr3R:5861527-5861647 2.2e-05 103_[+1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCVCGGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCVCGGC width=8 seqs=13 chrX:3880949-3881069 ( 95) GCCGCGGC 1 chrX:5639248-5639368 ( 99) GCCACGGC 1 chr3R:27937959-27938079 ( 87) GCCGCGGG 1 chr3L:3875203-3875323 ( 109) GCCCCGGG 1 chr2L:19867014-19867134 ( 3) GCCACGGG 1 chrX:19667039-19667159 ( 88) GCCCCCGC 1 chr3R:5592298-5592418 ( 58) GCCCCCGC 1 chr3R:30305132-30305252 ( 58) GCCACCGC 1 chr2L:13205453-13205573 ( 62) GCCTCGGC 1 chr3L:19674494-19674614 ( 107) GCCAGGGC 1 chr3R:19858446-19858566 ( 32) GGCGCGGC 1 chr3R:23445449-23445569 ( 80) GCCAGGGG 1 chr3R:5861527-5861647 ( 104) GCCGCGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCVCGGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 2.9e+000 -1035 -1035 257 -1035 -1035 247 -113 -1035 -1035 259 -1035 -1035 22 47 87 -212 -1035 235 -13 -1035 -1035 47 219 -1035 -210 -1035 245 -1035 -1035 206 87 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCVCGGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.9e+000 0.000000 0.000000 1.000000 0.000000 0.000000 0.923077 0.076923 0.000000 0.000000 1.000000 0.000000 0.000000 0.384615 0.230769 0.307692 0.076923 0.000000 0.846154 0.153846 0.000000 0.000000 0.230769 0.769231 0.000000 0.076923 0.000000 0.923077 0.000000 0.000000 0.692308 0.307692 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCVCGGC MEME-1 regular expression -------------------------------------------------------------------------------- GCC[AGC]C[GC]G[CG] -------------------------------------------------------------------------------- Time 7.52 secs. ******************************************************************************** ******************************************************************************** MOTIF GCACTGTG MEME-2 width = 8 sites = 18 llr = 172 E-value = 9.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACTGTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::922::: pos.-specific C :a:8::11 probability G 8:1::a39 matrix T 2:::8:7: bits 2.6 * * 2.3 * * 2.1 * * * 1.8 ** * * * Relative 1.6 ** * * * Entropy 1.3 **** * * (13.8 bits) 1.0 ****** * 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCACTGTG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:15235302-15235422 99 4.85e-06 GGCCCACTGT GCACTGTG GGCCATTACG chr2L:3587412-3587532 6 4.85e-06 GAAAT GCACTGTG AGAAAATATA chr2R:14645057-14645177 85 4.85e-06 GCACACAGGC GCACTGTG GCGTTTTAGC chr3R:31704597-31704717 39 7.29e-06 CACACCCCGT GCACTGGG GTTAAGTAAT chr2R:18799983-18800103 111 7.29e-06 GCCTTACACG GCACTGGG GT chr3R:19164977-19165097 37 1.21e-05 CCGCGCTCAC GCACAGTG GTCGCTTTTG chr3L:6969192-6969312 22 1.21e-05 CGCATTAACG GCACAGTG AAACTCCACA chr3R:16907899-16908019 2 1.21e-05 C GCACAGTG GGATAAATAA chr2R:9207476-9207596 51 1.69e-05 TTTTTAGACA GCACTGCG GTCAGCTGGT chr3R:30305132-30305252 102 2.42e-05 TTTTTGCCAC GCACTGTC AGTGGCCCGC chrX:12496964-12497084 112 2.42e-05 CTAGATAGCT GCACTGTC G chr3L:6264570-6264690 102 4.71e-05 GCGCTAAAAA GCAATGTG TAGAATACAT chr3R:9055281-9055401 9 4.71e-05 AACGTGGC GCGCTGGG TATCTTTTTT chrX:2149673-2149793 20 4.71e-05 CTGACTGCAT TCACTGTG GTGTCACGTG chr3R:21850325-21850445 113 4.71e-05 TATCGAGGGT TCACTGTG chr3R:5592298-5592418 72 4.71e-05 CCGCATTGGA GCAATGTG TTGGAGCGAG chr2R:7054374-7054494 32 5.69e-05 TCTAGTACAA TCACTGGG TAAATTTCGG chr2R:21662446-21662566 23 5.69e-05 TGGTGCCCTC GCAATGGG CTCGTCCATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:15235302-15235422 4.9e-06 98_[+2]_14 chr2L:3587412-3587532 4.9e-06 5_[+2]_107 chr2R:14645057-14645177 4.9e-06 84_[+2]_28 chr3R:31704597-31704717 7.3e-06 38_[+2]_74 chr2R:18799983-18800103 7.3e-06 110_[+2]_2 chr3R:19164977-19165097 1.2e-05 36_[+2]_76 chr3L:6969192-6969312 1.2e-05 21_[+2]_91 chr3R:16907899-16908019 1.2e-05 1_[+2]_111 chr2R:9207476-9207596 1.7e-05 50_[+2]_62 chr3R:30305132-30305252 2.4e-05 101_[+2]_11 chrX:12496964-12497084 2.4e-05 111_[+2]_1 chr3L:6264570-6264690 4.7e-05 101_[+2]_11 chr3R:9055281-9055401 4.7e-05 8_[+2]_104 chrX:2149673-2149793 4.7e-05 19_[+2]_93 chr3R:21850325-21850445 4.7e-05 112_[+2] chr3R:5592298-5592418 4.7e-05 71_[+2]_41 chr2R:7054374-7054494 5.7e-05 31_[+2]_81 chr2R:21662446-21662566 5.7e-05 22_[+2]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACTGTG width=8 seqs=18 chr3L:15235302-15235422 ( 99) GCACTGTG 1 chr2L:3587412-3587532 ( 6) GCACTGTG 1 chr2R:14645057-14645177 ( 85) GCACTGTG 1 chr3R:31704597-31704717 ( 39) GCACTGGG 1 chr2R:18799983-18800103 ( 111) GCACTGGG 1 chr3R:19164977-19165097 ( 37) GCACAGTG 1 chr3L:6969192-6969312 ( 22) GCACAGTG 1 chr3R:16907899-16908019 ( 2) GCACAGTG 1 chr2R:9207476-9207596 ( 51) GCACTGCG 1 chr3R:30305132-30305252 ( 102) GCACTGTC 1 chrX:12496964-12497084 ( 112) GCACTGTC 1 chr3L:6264570-6264690 ( 102) GCAATGTG 1 chr3R:9055281-9055401 ( 9) GCGCTGGG 1 chrX:2149673-2149793 ( 20) TCACTGTG 1 chr3R:21850325-21850445 ( 113) TCACTGTG 1 chr3R:5592298-5592418 ( 72) GCAATGTG 1 chr2R:7054374-7054494 ( 32) TCACTGGG 1 chr2R:21662446-21662566 ( 23) GCAATGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.91657 E= 9.5e+002 -1081 -1081 231 -101 -1081 259 -1081 -1081 151 -1081 -160 -1081 -99 233 -1081 -1081 -99 -1081 -1081 131 -1081 -1081 257 -1081 -1081 -158 72 99 -1081 -58 240 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 9.5e+002 0.000000 0.000000 0.833333 0.166667 0.000000 1.000000 0.000000 0.000000 0.944444 0.000000 0.055556 0.000000 0.166667 0.833333 0.000000 0.000000 0.166667 0.000000 0.000000 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.055556 0.277778 0.666667 0.000000 0.111111 0.888889 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGTG MEME-2 regular expression -------------------------------------------------------------------------------- GCACTG[TG]G -------------------------------------------------------------------------------- Time 13.84 secs. ******************************************************************************** ******************************************************************************** MOTIF GCACCGCA MEME-3 width = 8 sites = 4 llr = 50 E-value = 9.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACCGCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a::::a pos.-specific C :a:8a:a: probability G a::3:a:: matrix T :::::::: bits 2.6 ** *** 2.3 ** *** 2.1 ** *** 1.8 ** **** Relative 1.6 ******** Entropy 1.3 ******** (17.9 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCACCGCA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACCGCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3288906-3289026 37 2.35e-06 TGCCATGGTC GCACCGCA CCTTAAATAC chr3R:24544431-24544551 97 2.35e-06 GTGTAAACAC GCACCGCA ACAGTTGTTC chr2R:15680030-15680150 91 2.35e-06 GCGCCTAACA GCACCGCA TTGGTATTCT chrX:3968832-3968952 87 4.72e-06 CACAGGTCTG GCAGCGCA AAAGCTTGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACCGCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3288906-3289026 2.3e-06 36_[+3]_76 chr3R:24544431-24544551 2.3e-06 96_[+3]_16 chr2R:15680030-15680150 2.3e-06 90_[+3]_22 chrX:3968832-3968952 4.7e-06 86_[+3]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACCGCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACCGCA width=8 seqs=4 chrX:3288906-3289026 ( 37) GCACCGCA 1 chr3R:24544431-24544551 ( 97) GCACCGCA 1 chr2R:15680030-15680150 ( 91) GCACCGCA 1 chrX:3968832-3968952 ( 87) GCAGCGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACCGCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9376 E= 9.7e+003 -865 -865 257 -865 -865 259 -865 -865 159 -865 -865 -865 -865 217 57 -865 -865 259 -865 -865 -865 -865 257 -865 -865 259 -865 -865 159 -865 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACCGCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 9.7e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACCGCA MEME-3 regular expression -------------------------------------------------------------------------------- GCA[CG]CGCA -------------------------------------------------------------------------------- Time 20.09 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCCCCT MEME-4 width = 8 sites = 2 llr = 27 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCCCCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:aaaaa: probability G :a:::::: matrix T :::::::a bits 2.6 ******* 2.3 ******* 2.1 ******* 1.8 ******* Relative 1.6 ******** Entropy 1.3 ******** (19.7 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCCCCCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21834408-21834528 110 1.18e-06 CATCAGTGTA CGCCCCCT ACC chr3R:4732350-4732470 5 1.18e-06 ATAG CGCCCCCT ACGATAATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21834408-21834528 1.2e-06 109_[+4]_3 chr3R:4732350-4732470 1.2e-06 4_[+4]_108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCCCCT width=8 seqs=2 chr3R:21834408-21834528 ( 110) CGCCCCCT 1 chr3R:4732350-4732470 ( 5) CGCCCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.0e+004 -765 258 -765 -765 -765 -765 257 -765 -765 258 -765 -765 -765 258 -765 -765 -765 258 -765 -765 -765 258 -765 -765 -765 258 -765 -765 -765 -765 -765 157 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.0e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCCT MEME-4 regular expression -------------------------------------------------------------------------------- CGCCCCCT -------------------------------------------------------------------------------- Time 26.34 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACCCC MEME-5 width = 8 sites = 2 llr = 26 E-value = 1.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:a:::: pos.-specific C a:a:aaaa probability G :::::::: matrix T :::::::: bits 2.6 * * **** 2.3 * * **** 2.1 * * **** 1.8 * * **** Relative 1.6 ******** Entropy 1.3 ******** (18.7 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CACACCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:13205453-13205573 79 2.29e-06 CGATGGACCC CACACCCC TTTTGCACCA chr3R:31704597-31704717 29 2.29e-06 CTACCGATCA CACACCCC GTGCACTGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:13205453-13205573 2.3e-06 78_[+5]_34 chr3R:31704597-31704717 2.3e-06 28_[+5]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACCCC width=8 seqs=2 chr2L:13205453-13205573 ( 79) CACACCCC 1 chr3R:31704597-31704717 ( 29) CACACCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.9e+004 -765 258 -765 -765 159 -765 -765 -765 -765 258 -765 -765 159 -765 -765 -765 -765 258 -765 -765 -765 258 -765 -765 -765 258 -765 -765 -765 258 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.9e+004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACCCC MEME-5 regular expression -------------------------------------------------------------------------------- CACACCCC -------------------------------------------------------------------------------- Time 32.59 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5592298-5592418 3.55e-07 57_[+1(6.01e-06)]_6_[+2(4.71e-05)]_\ 22_[+3(8.23e-05)]_11 chr3L:21539763-21539883 1.16e-01 120 chr2R:9207476-9207596 6.56e-03 50_[+2(1.69e-05)]_62 chr2R:15542558-15542678 3.52e-02 44_[+2(6.64e-05)]_68 chr3R:15547929-15548049 9.20e-01 120 chr2R:15680030-15680150 1.27e-03 90_[+3(2.35e-06)]_22 chr2R:4188133-4188253 5.25e-01 120 chr3L:7867502-7867622 1.96e-01 120 chrX:3880949-3881069 5.58e-03 94_[+1(6.05e-07)]_18 chr3R:14894467-14894587 1.66e-01 120 chr3R:14903987-14904107 7.38e-03 107_[+2(6.64e-05)]_5 chr3R:14308876-14308996 1.00e+00 120 chr3L:11535032-11535152 1.00e+00 120 chr3L:18225117-18225237 3.31e-01 120 chrX:15890367-15890487 9.58e-01 120 chr3L:14613774-14613894 7.01e-01 120 chr3L:7510849-7510969 9.29e-01 120 chr3R:4732350-4732470 1.95e-03 4_[+4(1.18e-06)]_108 chr3L:17948843-17948963 7.61e-01 120 chr2L:13905433-13905553 9.12e-01 120 chr3R:27826327-27826447 4.28e-01 120 chr3R:16241932-16242052 4.25e-01 120 chr3R:18438830-18438950 6.81e-01 120 chrX:13676709-13676829 2.03e-01 120 chr4:1030916-1031036 4.01e-03 33_[+5(8.07e-05)]_79 chr3R:10626152-10626272 8.43e-02 120 chr3L:6059219-6059339 2.25e-01 120 chrX:3403554-3403674 9.37e-01 120 chr3R:17049008-17049128 9.41e-01 120 chr2L:7295115-7295235 9.98e-01 120 chr2R:20270943-20271063 9.87e-01 120 chr2R:22886148-22886268 5.82e-01 120 chrX:17226784-17226904 9.42e-01 120 chr2R:16660178-16660298 8.76e-01 120 chrX:8196307-8196427 1.56e-01 120 chrX:7166484-7166604 4.31e-01 120 chr3R:8349628-8349748 2.49e-01 120 chr3L:19261179-19261299 3.27e-01 120 chr3L:20612984-20613104 8.01e-01 120 chr3R:6665431-6665551 8.99e-02 120 chrX:15453222-15453342 6.65e-01 120 chr2L:21196688-21196808 3.28e-01 120 chr3L:908604-908724 2.39e-01 120 chr3R:29772480-29772600 9.99e-01 120 chr2L:3058788-3058908 2.74e-01 120 chr3R:23300811-23300931 1.14e-01 120 chr3L:19674494-19674614 2.91e-03 106_[+1(1.14e-05)]_6 chr3R:27205062-27205182 5.82e-01 120 chr4:709875-709995 3.62e-01 120 chr2R:18799983-18800103 3.84e-05 110_[+2(7.29e-06)]_2 chr2L:18871974-18872094 9.88e-01 120 chr3L:17949858-17949978 5.98e-01 120 chr2R:21662446-21662566 1.08e-02 22_[+2(5.69e-05)]_90 chr2L:12700701-12700821 7.37e-02 120 chr3L:27267086-27267206 9.84e-01 120 chrX:12496964-12497084 1.17e-01 111_[+2(2.42e-05)]_1 chr3L:10847916-10848036 9.87e-01 120 chr2L:10683085-10683205 9.81e-01 120 chr3R:6791163-6791283 8.62e-01 120 chr2L:1629717-1629837 3.63e-01 120 chr3R:29550127-29550247 9.72e-01 120 chrX:3367434-3367554 9.99e-01 120 chrX:7556357-7556477 6.40e-01 120 chr3L:18402700-18402820 9.77e-01 120 chr3R:5861527-5861647 1.31e-03 37_[+5(8.07e-05)]_58_[+1(2.17e-05)]_\ 9 chr3L:5630318-5630438 9.66e-01 120 chr3R:31704597-31704717 2.18e-06 28_[+5(2.29e-06)]_2_[+2(7.29e-06)]_\ 74 chr3R:27988622-27988742 1.10e-01 120 chrX:10601818-10601938 1.00e+00 120 chr3L:26014180-26014300 5.84e-01 120 chr3L:1414131-1414251 3.50e-01 120 chr3R:22566609-22566729 9.46e-01 120 chrX:7703074-7703194 9.97e-01 120 chrX:4574160-4574280 5.87e-01 120 chr3R:21834408-21834528 1.20e-03 109_[+4(1.18e-06)]_3 chr3R:6949387-6949507 1.02e-02 26_[+2(4.85e-06)]_2_[+2(4.85e-06)]_\ 76 chr3L:15847877-15847997 7.97e-01 120 chr3R:14894671-14894791 1.27e-01 120 chr2L:16727706-16727826 6.43e-02 65_[+3(8.23e-05)]_47 chr3R:19935393-19935513 9.31e-01 120 chr2L:19233455-19233575 6.78e-01 120 chr2L:6819476-6819596 1.73e-01 120 chr3R:12443316-12443436 7.85e-01 120 chr3R:27153528-27153648 9.18e-01 120 chr2R:6133627-6133747 9.81e-01 120 chr2R:11602036-11602156 9.96e-01 120 chr2L:6967827-6967947 1.00e+00 120 chrX:17780403-17780523 6.98e-01 120 chr2R:14645057-14645177 3.69e-02 84_[+2(4.85e-06)]_28 chr3L:13356184-13356304 8.34e-01 120 chr2R:7490214-7490334 9.89e-01 120 chrX:9584820-9584940 4.75e-01 120 chr2L:14376970-14377090 3.69e-01 120 chr3L:18272331-18272451 3.47e-01 120 chr2L:20327528-20327648 4.34e-02 120 chr3L:4254552-4254672 9.99e-01 120 chr3R:15472786-15472906 1.82e-01 [+3(2.36e-05)]_112 chr3R:13446604-13446724 9.98e-01 120 chr3R:24544431-24544551 1.28e-05 57_[+5(8.07e-05)]_31_[+3(2.35e-06)]_\ 16 chr3R:16907899-16908019 7.92e-02 1_[+2(1.21e-05)]_111 chr2R:11197759-11197879 5.39e-01 120 chrX:18404966-18405086 6.30e-01 120 chr2L:11189223-11189343 9.11e-01 120 chr2L:11066009-11066129 9.31e-01 120 chr3R:20950318-20950438 8.54e-01 120 chr4:570964-571084 8.19e-01 120 chrX:13391303-13391423 3.79e-01 120 chr3R:5660219-5660339 7.31e-01 120 chrX:3288906-3289026 2.77e-05 36_[+3(2.35e-06)]_76 chr3L:17352924-17353044 1.97e-02 120 chrX:17830351-17830471 8.68e-01 120 chr3L:22910110-22910230 8.41e-02 120 chr2L:9996693-9996813 4.05e-01 120 chr3L:22277393-22277513 2.01e-01 120 chr3L:6981960-6982080 1.00e+00 120 chr2L:11199178-11199298 4.75e-01 120 chr3L:11322618-11322738 6.76e-01 120 chr2L:19219565-19219685 9.62e-01 120 chr2R:11176332-11176452 1.00e+00 120 chr3L:16165796-16165916 9.20e-01 120 chr2R:7054374-7054494 4.20e-01 31_[+2(5.69e-05)]_81 chr3L:8526303-8526423 1.18e-01 120 chrX:457994-458114 3.76e-01 120 chrX:15043907-15044027 2.78e-01 120 chr3L:6969192-6969312 4.44e-02 21_[+2(1.21e-05)]_91 chr2R:13015199-13015319 9.48e-01 120 chr3L:1151764-1151884 4.66e-01 120 chr2L:6088994-6089114 1.12e-01 120 chr2R:11204363-11204483 6.85e-01 120 chr2R:22690301-22690421 9.96e-01 120 chr2R:10899030-10899150 6.64e-02 120 chr3R:16209124-16209244 1.00e+00 120 chrX:19166625-19166745 2.51e-01 120 chr3R:27937959-27938079 1.28e-04 86_[+1(3.01e-06)]_26 chr2L:3587412-3587532 6.89e-02 5_[+2(4.85e-06)]_107 chr3L:13068385-13068505 4.33e-01 120 chr3R:17540127-17540247 9.57e-01 120 chr3L:3875203-3875323 4.44e-03 108_[+1(3.61e-06)]_4 chr3R:31689852-31689972 6.50e-01 120 chrX:12583528-12583648 1.40e-02 120 chr2L:19121033-19121153 9.74e-01 120 chr2L:11528397-11528517 1.46e-01 88_[+3(8.23e-05)]_24 chr3R:19164977-19165097 6.17e-03 36_[+2(1.21e-05)]_76 chr3R:26052467-26052587 9.15e-01 120 chr2L:21310188-21310308 4.17e-01 120 chrX:5639248-5639368 4.15e-03 98_[+1(2.39e-06)]_14 chr3L:19637026-19637146 6.06e-01 120 chr3R:11368919-11369039 1.00e+00 120 chr3L:10337640-10337760 9.97e-01 120 chr3R:12426016-12426136 6.04e-02 120 chr3L:15321109-15321229 9.76e-01 120 chr2R:9132244-9132364 9.96e-01 120 chr2L:19453538-19453658 1.25e-01 120 chrX:255358-255478 9.90e-01 120 chrX:17330476-17330596 6.75e-01 120 chr2R:20257445-20257565 9.94e-01 120 chr3L:11291578-11291698 2.50e-01 120 chr3R:25123360-25123480 6.89e-01 120 chr3L:11822473-11822593 5.69e-01 120 chr3L:699403-699523 9.80e-01 120 chr3L:15235302-15235422 2.42e-03 98_[+2(4.85e-06)]_14 chr2L:11338399-11338519 4.60e-01 120 chr3L:16061055-16061175 9.57e-01 120 chr3L:15693162-15693282 7.08e-01 120 chr4:1181874-1181994 9.89e-01 120 chr3R:23445449-23445569 1.58e-02 40_[+1(1.99e-05)]_31_[+1(1.99e-05)]_\ 33 chrX:13333083-13333203 6.10e-01 120 chr3L:6220365-6220485 4.77e-02 87_[+1(8.89e-05)]_25 chr3R:21850325-21850445 2.01e-03 112_[+2(4.71e-05)] chr3L:20517009-20517129 2.47e-02 55_[+5(8.07e-05)]_57 chrX:16102477-16102597 2.46e-02 120 chrX:2149673-2149793 4.33e-02 19_[+2(4.71e-05)]_93 chr2R:21364861-21364981 8.87e-01 120 chr3L:9461745-9461865 2.88e-02 120 chr2L:3776017-3776137 3.06e-01 120 chr3L:18226083-18226203 8.07e-01 120 chr3R:29211199-29211319 6.28e-01 120 chr2L:3566714-3566834 7.50e-01 120 chrX:10488039-10488159 8.90e-01 120 chrX:14169209-14169329 2.49e-01 120 chr2R:22387705-22387825 7.96e-01 120 chr3R:9600732-9600852 9.98e-01 120 chr2L:8415413-8415533 1.00e+00 120 chr2L:14441023-14441143 9.94e-01 120 chr3R:5856372-5856492 8.26e-01 120 chr3R:18448635-18448755 9.57e-01 120 chr3R:29869225-29869345 3.15e-02 120 chr3R:30304921-30305041 9.92e-01 120 chr3R:9260593-9260713 1.54e-01 120 chr2L:18900022-18900142 1.09e-01 120 chrX:13634291-13634411 9.93e-01 120 chrX:7571342-7571462 1.00e+00 120 chrX:3968832-3968952 3.46e-04 86_[+3(4.72e-06)]_26 chr2L:7871831-7871951 8.53e-01 120 chrX:7728598-7728718 9.69e-01 120 chr3R:8867861-8867981 1.00e+00 120 chrX:8445108-8445228 4.51e-01 120 chr3L:12037996-12038116 3.42e-01 120 chr2L:2176036-2176156 6.92e-01 120 chr2R:10077748-10077868 8.42e-01 120 chr3R:8207037-8207157 9.97e-01 120 chr3R:9055281-9055401 1.76e-02 8_[+2(4.71e-05)]_104 chr2L:522876-522996 9.78e-01 120 chr2R:15835557-15835677 9.61e-01 120 chr2L:18305214-18305334 9.97e-01 120 chr3R:22420999-22421119 1.48e-01 120 chr2R:16691335-16691455 9.99e-01 120 chrX:19770302-19770422 9.89e-01 120 chr3L:8692207-8692327 9.99e-01 120 chr3R:18393552-18393672 1.61e-01 120 chr3L:18250801-18250921 7.58e-01 120 chr2L:19867014-19867134 3.65e-03 2_[+1(5.42e-06)]_110 chrX:2146193-2146313 1.19e-01 80_[+1(9.43e-05)]_32 chr3L:19000570-19000690 4.35e-01 120 chr3L:5857069-5857189 8.87e-01 120 chr2L:13205453-13205573 4.33e-06 61_[+1(1.02e-05)]_9_[+5(2.29e-06)]_\ 34 chr2L:11950050-11950170 9.98e-01 120 chr3R:22625836-22625956 9.77e-01 120 chr3L:17659065-17659185 4.79e-01 120 chr3L:16165998-16166118 9.74e-01 120 chr2R:23577468-23577588 9.22e-01 120 chr2L:15743714-15743834 6.82e-01 120 chr3L:10784638-10784758 7.39e-01 120 chr3R:26117757-26117877 7.29e-01 120 chrX:5336832-5336952 7.69e-01 120 chr3L:21954666-21954786 3.31e-01 120 chr3L:3855296-3855416 9.97e-01 120 chr2L:21163366-21163486 9.05e-01 120 chr3R:25027641-25027761 8.30e-01 120 chrX:11570421-11570541 1.91e-01 120 chrX:13258829-13258949 9.38e-01 120 chr2L:21143080-21143200 5.07e-01 120 chrX:1907776-1907896 6.04e-01 120 chr2L:9598586-9598706 6.33e-03 120 chr3L:12644527-12644647 1.00e+00 120 chrX:5698189-5698309 4.72e-01 120 chr3R:9605161-9605281 6.03e-01 120 chrX:19667039-19667159 6.95e-04 87_[+1(6.01e-06)]_25 chr3R:24917942-24918062 9.93e-01 120 chr3R:19858446-19858566 1.48e-02 31_[+1(1.44e-05)]_81 chr2R:11275864-11275984 8.70e-01 120 chr3R:30305132-30305252 5.65e-06 57_[+1(7.18e-06)]_36_[+2(2.42e-05)]_\ 11 chr2R:24748862-24748982 3.64e-01 120 chr3L:6264570-6264690 1.46e-02 101_[+2(4.71e-05)]_11 chrX:5892186-5892306 9.98e-01 120 chrX:19663420-19663540 4.28e-01 120 chr3R:16355572-16355692 7.42e-02 120 chr2L:6830303-6830423 2.91e-01 120 chrX:12748428-12748548 1.00e+00 120 chr3L:19561906-19562026 8.11e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************