******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Trl.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:12252924-12253044 1.0000 120 chr2L:21221919-21222039 1.0000 120 chrX:3190961-3191081 1.0000 120 chr3L:9188328-9188448 1.0000 120 chr2L:2798986-2799106 1.0000 120 chr3R:14986264-14986384 1.0000 120 chr2R:9566811-9566931 1.0000 120 chrX:2743743-2743863 1.0000 120 chr2L:13113702-13113822 1.0000 120 chr3L:625982-626102 1.0000 120 chr3L:6997609-6997729 1.0000 120 chr2L:12134114-12134234 1.0000 120 chrX:9588679-9588799 1.0000 120 chr3R:10035314-10035434 1.0000 120 chrX:12869686-12869806 1.0000 120 chr3R:18584667-18584787 1.0000 120 chr3L:19432364-19432484 1.0000 120 chr2R:24712821-24712941 1.0000 120 chr3L:9190299-9190419 1.0000 120 chr3L:5664699-5664819 1.0000 120 chr3L:13904520-13904640 1.0000 120 chr2R:12868672-12868792 1.0000 120 chr3L:17148817-17148937 1.0000 120 chrX:9190803-9190923 1.0000 120 chrX:3295643-3295763 1.0000 120 chr3R:20204610-20204730 1.0000 120 chr3R:9979486-9979606 1.0000 120 chrX:12471927-12472047 1.0000 120 chrX:16687525-16687645 1.0000 120 chr2L:10757197-10757317 1.0000 120 chr2L:2797520-2797640 1.0000 120 chr3L:10658865-10658985 1.0000 120 chrX:17963460-17963580 1.0000 120 chrX:1514214-1514334 1.0000 120 chr3R:17916692-17916812 1.0000 120 chr3R:7974216-7974336 1.0000 120 chr3R:9359515-9359635 1.0000 120 chr3R:18094790-18094910 1.0000 120 chr3L:2896513-2896633 1.0000 120 chr3R:14580145-14580265 1.0000 120 chr3R:21060074-21060194 1.0000 120 chr3R:9460763-9460883 1.0000 120 chr3R:12477801-12477921 1.0000 120 chr2L:9272334-9272454 1.0000 120 chrX:2255163-2255283 1.0000 120 chr3L:13902054-13902174 1.0000 120 chr2R:18407714-18407834 1.0000 120 chr2R:14715864-14715984 1.0000 120 chr2L:11879058-11879178 1.0000 120 chr3R:27157675-27157795 1.0000 120 chr2R:9389980-9390100 1.0000 120 chr2L:3426044-3426164 1.0000 120 chr3L:12892528-12892648 1.0000 120 chr3R:13240565-13240685 1.0000 120 chr3L:22720837-22720957 1.0000 120 chr2R:9519428-9519548 1.0000 120 chr2R:11232005-11232125 1.0000 120 chr2R:9376758-9376878 1.0000 120 chr3R:7750058-7750178 1.0000 120 chr3L:20105120-20105240 1.0000 120 chr3R:22733155-22733275 1.0000 120 chr3L:21193674-21193794 1.0000 120 chrX:11370308-11370428 1.0000 120 chr3R:24485121-24485241 1.0000 120 chrX:19690190-19690310 1.0000 120 chr2R:9519628-9519748 1.0000 120 chr2L:13084522-13084642 1.0000 120 chr3R:24260579-24260699 1.0000 120 chr3R:23228459-23228579 1.0000 120 chr3L:3757821-3757941 1.0000 120 chr2R:21175174-21175294 1.0000 120 chr2L:1927530-1927650 1.0000 120 chrX:10245351-10245471 1.0000 120 chr2R:21843189-21843309 1.0000 120 chrX:17291761-17291881 1.0000 120 chr3R:12467787-12467907 1.0000 120 chr3R:25783123-25783243 1.0000 120 chr3L:3828263-3828383 1.0000 120 chr3L:16661142-16661262 1.0000 120 chr3R:12468016-12468136 1.0000 120 chrX:12431852-12431972 1.0000 120 chr3R:6082272-6082392 1.0000 120 chr3L:16029114-16029234 1.0000 120 chr2L:20829481-20829601 1.0000 120 chr2R:12054836-12054956 1.0000 120 chrX:13763270-13763390 1.0000 120 chr3R:7973820-7973940 1.0000 120 chrX:11791788-11791908 1.0000 120 chr3L:17149967-17150087 1.0000 120 chr2L:3730171-3730291 1.0000 120 chrX:6860723-6860843 1.0000 120 chr2L:14230211-14230331 1.0000 120 chr3L:9179492-9179612 1.0000 120 chr3L:16660940-16661060 1.0000 120 chrX:3191185-3191305 1.0000 120 chr3L:7313847-7313967 1.0000 120 chr3R:20741565-20741685 1.0000 120 chr3L:11197032-11197152 1.0000 120 chr3R:23239166-23239286 1.0000 120 chr2R:11116455-11116575 1.0000 120 chrX:7695924-7696044 1.0000 120 chr3L:3747407-3747527 1.0000 120 chr3L:5657668-5657788 1.0000 120 chr2L:21401711-21401831 1.0000 120 chr3L:21047873-21047993 1.0000 120 chr2R:18514897-18515017 1.0000 120 chr3L:6623806-6623926 1.0000 120 chr3L:1637031-1637151 1.0000 120 chrX:22712594-22712714 1.0000 120 chr2R:18406800-18406920 1.0000 120 chr2R:23796402-23796522 1.0000 120 chrX:6757321-6757441 1.0000 120 chr3R:18931838-18931958 1.0000 120 chr2L:4281936-4282056 1.0000 120 chrX:4694214-4694334 1.0000 120 chr3R:17069497-17069617 1.0000 120 chr3L:4430438-4430558 1.0000 120 chr2R:12271601-12271721 1.0000 120 chrX:3292848-3292968 1.0000 120 chr2L:1663247-1663367 1.0000 120 chr2L:6874216-6874336 1.0000 120 chr2L:9863734-9863854 1.0000 120 chr3R:8261778-8261898 1.0000 120 chr2R:15425054-15425174 1.0000 120 chrX:3677270-3677390 1.0000 120 chrX:5364194-5364314 1.0000 120 chr2R:19231350-19231470 1.0000 120 chr3R:14021046-14021166 1.0000 120 chr3R:13258850-13258970 1.0000 120 chr3L:13991471-13991591 1.0000 120 chr2L:3766120-3766240 1.0000 120 chr3L:11428542-11428662 1.0000 120 chr3R:28654698-28654818 1.0000 120 chrX:499356-499476 1.0000 120 chr3R:21581954-21582074 1.0000 120 chrX:7629334-7629454 1.0000 120 chr2R:6828219-6828339 1.0000 120 chr2R:25114380-25114500 1.0000 120 chr3L:8285455-8285575 1.0000 120 chr2R:14959033-14959153 1.0000 120 chr3R:21096656-21096776 1.0000 120 chr3R:29458155-29458275 1.0000 120 chr2R:12099568-12099688 1.0000 120 chr3L:21319477-21319597 1.0000 120 chr2R:9567014-9567134 1.0000 120 chr3R:9866394-9866514 1.0000 120 chr2L:16720298-16720418 1.0000 120 chr2L:17621334-17621454 1.0000 120 chr3R:12653635-12653755 1.0000 120 chr3R:30881141-30881261 1.0000 120 chr3L:15090425-15090545 1.0000 120 chr3R:22598332-22598452 1.0000 120 chr3R:24457619-24457739 1.0000 120 chr2L:12504150-12504270 1.0000 120 chrX:541811-541931 1.0000 120 chr2R:17802529-17802649 1.0000 120 chr2L:10757419-10757539 1.0000 120 chr3R:28324974-28325094 1.0000 120 chr3L:6717121-6717241 1.0000 120 chrX:10620375-10620495 1.0000 120 chr2R:17097763-17097883 1.0000 120 chr3R:13240766-13240886 1.0000 120 chr3R:27426168-27426288 1.0000 120 chr2R:14139929-14140049 1.0000 120 chr3R:4797721-4797841 1.0000 120 chr3R:19731242-19731362 1.0000 120 chrX:11791990-11792110 1.0000 120 chr3L:2171005-2171125 1.0000 120 chr3L:6552541-6552661 1.0000 120 chr3L:3763313-3763433 1.0000 120 chr3L:2427328-2427448 1.0000 120 chr3R:31822742-31822862 1.0000 120 chrX:8414001-8414121 1.0000 120 chr2L:20242864-20242984 1.0000 120 chrX:13395225-13395345 1.0000 120 chr3R:19731013-19731133 1.0000 120 chr3R:18265357-18265477 1.0000 120 chr3L:9251757-9251877 1.0000 120 chr2L:15332709-15332829 1.0000 120 chr2R:11107592-11107712 1.0000 120 chr3L:13902258-13902378 1.0000 120 chrX:15633486-15633606 1.0000 120 chr2L:14797716-14797836 1.0000 120 chrX:10247494-10247614 1.0000 120 chr2L:13332036-13332156 1.0000 120 chrX:16562443-16562563 1.0000 120 chr3L:1275730-1275850 1.0000 120 chr3L:21770553-21770673 1.0000 120 chr3R:24092727-24092847 1.0000 120 chr3R:5414298-5414418 1.0000 120 chr3R:20739988-20740108 1.0000 120 chr2L:21151383-21151503 1.0000 120 chr3R:12080731-12080851 1.0000 120 chr3R:11458140-11458260 1.0000 120 chr3L:2169182-2169302 1.0000 120 chr2L:9744737-9744857 1.0000 120 chr2L:487013-487133 1.0000 120 chr3L:22721037-22721157 1.0000 120 chr3L:10722782-10722902 1.0000 120 chr3R:6407654-6407774 1.0000 120 chr3L:7313019-7313139 1.0000 120 chr2R:20943500-20943620 1.0000 120 chrX:6317740-6317860 1.0000 120 chr3R:19503445-19503565 1.0000 120 chr2L:12288646-12288766 1.0000 120 chrX:19260063-19260183 1.0000 120 chr3R:4565452-4565572 1.0000 120 chr3R:11982666-11982786 1.0000 120 chr2R:24903309-24903429 1.0000 120 chr3L:7847798-7847918 1.0000 120 chr3R:30281996-30282116 1.0000 120 chr3L:12914149-12914269 1.0000 120 chr4:388917-389037 1.0000 120 chr3R:19015532-19015652 1.0000 120 chr4:276469-276589 1.0000 120 chr3R:27987907-27988027 1.0000 120 chr2R:19395070-19395190 1.0000 120 chr2L:21151182-21151302 1.0000 120 chrX:7285521-7285641 1.0000 120 chr3R:24667961-24668081 1.0000 120 chr3R:18450419-18450539 1.0000 120 chr2L:5147675-5147795 1.0000 120 chr3R:29760146-29760266 1.0000 120 chr3L:15625369-15625489 1.0000 120 chr3R:17920452-17920572 1.0000 120 chr2R:12045059-12045179 1.0000 120 chrX:8414201-8414321 1.0000 120 chr3L:18539761-18539881 1.0000 120 chrX:3332719-3332839 1.0000 120 chr3L:9340269-9340389 1.0000 120 chrX:20411784-20411904 1.0000 120 chrX:5637689-5637809 1.0000 120 chrX:8115424-8115544 1.0000 120 chr3R:22998246-22998366 1.0000 120 chr3R:23965303-23965423 1.0000 120 chr3R:14064701-14064821 1.0000 120 chr3R:24862730-24862850 1.0000 120 chr2R:19411395-19411515 1.0000 120 chrX:11372873-11372993 1.0000 120 chr3R:11984592-11984712 1.0000 120 chr2L:21618055-21618175 1.0000 120 chr3L:13993518-13993638 1.0000 120 chrX:17657762-17657882 1.0000 120 chr3R:11543212-11543332 1.0000 120 chr2L:19519740-19519860 1.0000 120 chr3L:5665555-5665675 1.0000 120 chr2L:16798892-16799012 1.0000 120 chr3L:1883323-1883443 1.0000 120 chr2R:13191576-13191696 1.0000 120 chr2R:13620361-13620481 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Trl/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Trl.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.277 C 0.222 G 0.23 T 0.271 Background letter frequencies (from file dataset with add-one prior applied): A 0.277 C 0.222 G 0.23 T 0.271 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTCTCTCT MEME-1 width = 8 sites = 125 llr = 1169 E-value = 9.8e-157 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::1 pos.-specific C a:a:a:8: probability G :2:::::1 matrix T :8:a:a28 bits 2.2 * * 2.0 * *** 1.7 * *** 1.5 * ***** Relative 1.3 * ***** Entropy 1.1 ******** (13.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTCTCT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5665555-5665675 31 1.31e-05 CAGCAtccct ctctctct ctctctctcA chr3R:11543212-11543332 105 1.31e-05 ctctctctct ctctctct ctTGGGCT chrX:5637689-5637809 70 1.31e-05 cgctcgctct ctctctct ctccctcgtt chrX:3332719-3332839 67 1.31e-05 ccctctctct ctctctct acccctctgt chr2R:19395070-19395190 58 1.31e-05 GTGCCTCCAt ctctctct ctctctcgct chr3R:19015532-19015652 58 1.31e-05 ctctctctcc ctctctct gtcactcact chr3R:30281996-30282116 101 1.31e-05 GCTTGCctct ctctctct ctctatctct chr3L:7847798-7847918 72 1.31e-05 CTCTCGCCCG CTCTCTCT GTGTGAGTAA chr2L:12288646-12288766 49 1.31e-05 tgctctctct ctctctct cttgctcttt chr2L:487013-487133 47 1.31e-05 TTTtctctcc ctctctct ctcccgctct chr2L:9744737-9744857 54 1.31e-05 ATTTTCCAGG CTCTCTCT CTCTCTGGTG chr3R:12080731-12080851 76 1.31e-05 AGAAAGCGTG CTCTCTCT TACTCTCTTT chr3R:5414298-5414418 10 1.31e-05 ATCTGAGAG ctctctct ctctctctcg chrX:10247494-10247614 79 1.31e-05 atctgtctgc ctctctct ctctctctct chrX:15633486-15633606 36 1.31e-05 cgatctccct ctctctct ctctctctct chr3L:6552541-6552661 56 1.31e-05 TGAAGTTTTG CTCTCTCT CCCCGGCATT chr2R:14139929-14140049 69 1.31e-05 ctcacactct ctctctct ctcttccttt chr3R:27426168-27426288 78 1.31e-05 ctctgtctct ctctctct GTCTTTCTGT chr2R:17097763-17097883 24 1.31e-05 AAATGGAACT CTCTCTCT GTTCTTAAAA chrX:10620375-10620495 68 1.31e-05 cttactcgct ctctctct cgctcagtat chrX:541811-541931 54 1.31e-05 ctctctctct ctctctct gttctcggtc chr3R:22598332-22598452 77 1.31e-05 TTTCCCGGCT CTCTCTCT TAGCCCAGTT chr3R:30881141-30881261 54 1.31e-05 TTTGctctct ctctctct ctcttttctc chr3R:29458155-29458275 70 1.31e-05 aactctctct ctctctct ctctctTTAT chr3R:21096656-21096776 42 1.31e-05 GCTGGTAGTA CTCTCTCT GGCTCTCTCC chr2R:14959033-14959153 95 1.31e-05 ctctctcgct ctctctct ctctctgtcc chr2R:25114380-25114500 51 1.31e-05 TGCGctctcc ctctctct ctctctctct chr3R:28654698-28654818 79 1.31e-05 AAAGctctct ctctctct ctcctccctG chr3R:13258850-13258970 74 1.31e-05 TACCATCTCT CTCTCTCT CTTTATTTTT chr3R:14021046-14021166 76 1.31e-05 ATAACTCTTT CTCTCTCT GTCTCTTTAT chr3L:4430438-4430558 49 1.31e-05 ctctctcttg ctctctct ttctctcccg chrX:4694214-4694334 58 1.31e-05 cgctctctcg ctctctct ctctctccct chr2R:23796402-23796522 86 1.31e-05 CCctctctca ctctctct ctctctctct chr3L:1637031-1637151 74 1.31e-05 ctctgtttct ctctctct ctgtcgctct chr2R:18514897-18515017 52 1.31e-05 Ttctctctcg ctctctct atctctctct chr3L:21047873-21047993 67 1.31e-05 ctctctctct ctctctct ctctcGTTTT chr3L:5657668-5657788 67 1.31e-05 ctctttttct ctctctct ttttctccag chr2R:11116455-11116575 49 1.31e-05 GGGCCGCTCG CTCTCTCT TTCCCACACT chr3R:20741565-20741685 42 1.31e-05 GGGACAGTCT CTCTCTCT CTCGCGACTG chr2L:3730171-3730291 69 1.31e-05 TTTTGGGGGA CTCTCTCT CAGTTTCTCT chr3L:17149967-17150087 65 1.31e-05 CGCTCTCTCA CTCTCTCT AGCTACCGCT chr2R:12054836-12054956 61 1.31e-05 ctctctctct ctctctct ctctttgcct chrX:12431852-12431972 47 1.31e-05 atctatgtag ctctctct ctctctTTGG chr3L:3828263-3828383 46 1.31e-05 GCTTCCGAct ctctctct ctctctctct chr3R:25783123-25783243 78 1.31e-05 ctctctctct ctctctct GAGAGAAAAA chr2L:1927530-1927650 104 1.31e-05 GAGCGTTTTC CTCTCTCT ACAATTTTT chr2R:21175174-21175294 73 1.31e-05 ccctctctct ctctctct ctctctcGCG chr3R:23228459-23228579 70 1.31e-05 ccctctctct ctctctct ctctctctct chrX:11370308-11370428 54 1.31e-05 CTCTTTCGTC CTCTCTCT TTTGCTCTCC chr3R:7750058-7750178 73 1.31e-05 TTTCGTCTCT CTCTCTCT TGGGTTTCTC chr2R:9519428-9519548 81 1.31e-05 TGTtctctca ctctctct ccctctttct chr2R:9389980-9390100 75 1.31e-05 cgctctcaat ctctctct ctcCGGCTTT chr2R:14715864-14715984 73 1.31e-05 CActctctct ctctctct ctctccctct chr3L:13902054-13902174 76 1.31e-05 GGGTGCTACT CTCTCTCT CTCTCGCCAA chrX:2255163-2255283 86 1.31e-05 ctcgctcAct ctctctct ctctctctct chr3R:17916692-17916812 40 1.31e-05 TGAAAAGGGA ctctctct ctctctctct chr2L:2797520-2797640 69 1.31e-05 ctctctctct ctctctct ttctgtttct chrX:16687525-16687645 47 1.31e-05 CACACACAct ctctctct ctctctctct chr2R:12868672-12868792 46 1.31e-05 AGATCTGTCT CTCTCTCT CTATAAATAT chr3L:13904520-13904640 65 1.31e-05 AGTTTCctct ctctctct gtctctctct chr3R:18584667-18584787 100 1.31e-05 gttctcttct ctctctct ctttctcCAA chr3L:6997609-6997729 54 1.31e-05 cacgcgctct ctctctct ctctctttct chr2R:9566811-9566931 64 1.31e-05 ctctctctct ctctctct ctATATATTC chr2R:12252924-12253044 81 1.31e-05 gaatctctct ctctctct TGTTATGTCC chr3R:14064701-14064821 13 2.42e-05 CCTGCTTTTC CGCTCTCT CGCAGTCTAT chr3R:23965303-23965423 96 2.42e-05 CCCCATTtct cgctctct ttctagcttt chrX:8115424-8115544 21 2.42e-05 CACTCTGTTT CGCTCTCT GCCGCTCTCT chr3L:9340269-9340389 47 2.42e-05 AAACGCCGAC CGCTCTCT CCCCATCATT chrX:7285521-7285641 38 2.42e-05 TCTATTCTGG CGCTCTCT TTCCCTCTca chr2L:21151182-21151302 102 2.42e-05 tagcgctctc cgctctct cgctctcgaa chr2R:24903309-24903429 68 2.42e-05 CTTTTCTCAC CGCTCTCT TTCTTTCACT chrX:6317740-6317860 55 2.42e-05 AAGCACGCGG CGCTCTCT TATCCTCTTC chr2R:6828219-6828339 23 2.42e-05 GCGGGGAGAG CGCTCTCT CGgaggagat chr3R:21581954-21582074 89 2.42e-05 TCTCCGATTT CGCTCTCT CACGCACACG chrX:499356-499476 20 2.42e-05 CAGctctctc cgctctct tctgtctctc chr3L:13991471-13991591 18 2.42e-05 TTGCTTGGCC CGCTCTCT GCCTCTCTTC chrX:22712594-22712714 42 2.42e-05 ttgagctttc cgctctct cgctcttaaa chr3L:6623806-6623926 21 2.42e-05 CTCTCGCTGG CGCTCTCT CATTTCCACT chr3L:9179492-9179612 43 2.42e-05 GAAGCTCTCT CGCTCTCT GAGCACCTCG chr3R:12467787-12467907 71 2.42e-05 ATTCGAGGCG CGCTCTCT CGAACCAACG chr2R:9519628-9519748 94 2.42e-05 TGCTCACCTG CGctctct ttctcgtatt chr2L:9272334-9272454 103 2.42e-05 CGCTCTCTCA CGCTCTCT CGTACAATTT chr3R:7974216-7974336 36 2.42e-05 tagcgctctt cgctctct cgctctctaa chr2L:12134114-12134234 23 2.42e-05 GAGAAGCACT CGCTCTCT TGGCAGTAGC chr3L:21770553-21770673 86 4.02e-05 TAGCAGCTTA CTCTCTTT TGTTGCTGCG chr3L:13902258-13902378 101 4.02e-05 ATAGTTTCTG CTCTCTTT ACGCCTATAA chr2L:20242864-20242984 36 4.02e-05 CTCAAATTTG CTCTCTTT ACTACTCAAT chrX:8414001-8414121 75 4.02e-05 TCGACTTCCA CTCTCTTT CTTTTTCCCT chr3R:31822742-31822862 47 4.02e-05 TTGGCATTTT CTCTCTTT TCGCTCTTCT chr2R:18406800-18406920 75 4.02e-05 CTCTTAATTA CTCTCTTT CGAAATTCTA chr3L:7313847-7313967 88 4.02e-05 TCTCGCCGTT CTCTCTTT TGTCGCGCGC chrX:13763270-13763390 80 4.02e-05 CACGCTTTTG CTCTCTTT TACAAACAAC chr2L:3426044-3426164 8 4.02e-05 GGGTGCA CTCTCTTT CTCTTTCTCT chr3R:21060074-21060194 38 4.02e-05 TTATACATTA CTCTCTTT GCCGGTTAGA chr3R:20204610-20204730 93 4.02e-05 GGGCCTCTCA CTCTCTTT ACGGAGAGAA chr3L:5664699-5664819 81 4.02e-05 CTCTACTTTG CTCTCTTT CTACGCTCTT chr3L:15625369-15625489 93 5.13e-05 tgttctctcc ctctctcg tctcctctGT chrX:6757321-6757441 41 5.13e-05 tggctccagg ctctctcg attttttgtt chrX:1514214-1514334 63 5.13e-05 tggctccagg ctctctcg aatttttgtt chr3L:9190299-9190419 16 5.13e-05 AAGGATGCTA CTCTCTCG CAGTCTGCAC chr3R:22733155-22733275 1 6.47e-05 . ctctctca tttttattca chr3R:27987907-27988027 66 7.83e-05 aggcaaagag CGCTCTTT CTTCATTTCC chr3R:11458140-11458260 86 7.83e-05 TCTCGCCGCT CGCTCTTT GATTTCGATT chr3L:10658865-10658985 59 7.83e-05 TGCTCAGTGC CGCTCTTT TCTCACCCTG chrX:11791990-11792110 102 9.17e-05 ACTCGCTTCG CTCTCACT CTGACATCTT chr3R:23239166-23239286 64 9.17e-05 GGCTGGAGCG CTCTCACT GGAATCAGTG chr3L:16660940-16661060 39 9.17e-05 cttttacgca ctctcact cactctcgca chr3L:625982-626102 50 1.01e-04 GCTTGATTTT CGCTCTCG GCGAGATTAT chr3R:4565452-4565572 66 1.12e-04 aggtttctta cgctctca gcgggagtga chr3L:3747407-3747527 79 1.12e-04 TTCTCTTTCC CGCTCTCA TTGGCTATTA chr3L:9251757-9251877 74 1.23e-04 ATGGAAAAAT CTCTCTCC AAGCCGCCCT chr3L:11428542-11428662 12 1.39e-04 AAGAGATCAG CTTTCTCT TGAGTGATCG chr2R:9376758-9376878 82 1.39e-04 agCAAGAGTC CTTTCTCT GCTGTCTCTC chr3L:17148817-17148937 38 1.39e-04 ATAACAAGGG CTTTCTCT CGGTCTCTCG chr2R:18407714-18407834 42 1.64e-04 TTTTTGTCAA CTCTCTTG CGAAAATGTG chr3L:9188328-9188448 95 1.64e-04 GTTTTCCCTG CGCTCACT TTCGAGTTTT chr2R:11107592-11107712 56 1.80e-04 GAGCGAGATA CTCTCTTA ATCTGGAAAC chr3R:24457619-24457739 44 1.80e-04 TAGCCTTTCA CTCTCTTA TCTGCAACTC chr2L:11879058-11879178 87 1.80e-04 TAAATGCAAA CTCTCTTA GTTATCCAAA chr4:388917-389037 17 2.06e-04 TCTCGGTCAT CGCTCTCC ATCGCTTTCA chr2L:5147675-5147795 26 2.31e-04 CCGGAGCTTG CGCTCTTG TAGTTTATCA chr3R:11984592-11984712 82 2.56e-04 AGAGAAGGTT CGCTCTTA GTTCTTTATA chr3L:2171005-2171125 87 2.56e-04 AAGTTGTATT CTCTCACG AGCTCTTATT chr3R:6082272-6082392 101 2.56e-04 CAGGGAAATT CGCTCTTA GCGCTCGGGG chr3L:16661142-16661262 48 2.56e-04 CCTAACTTTG CTCTCACG CAAAAACACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5665555-5665675 1.3e-05 30_[+1]_82 chr3R:11543212-11543332 1.3e-05 104_[+1]_8 chrX:5637689-5637809 1.3e-05 69_[+1]_43 chrX:3332719-3332839 1.3e-05 66_[+1]_46 chr2R:19395070-19395190 1.3e-05 57_[+1]_55 chr3R:19015532-19015652 1.3e-05 57_[+1]_55 chr3R:30281996-30282116 1.3e-05 100_[+1]_12 chr3L:7847798-7847918 1.3e-05 71_[+1]_41 chr2L:12288646-12288766 1.3e-05 48_[+1]_64 chr2L:487013-487133 1.3e-05 46_[+1]_66 chr2L:9744737-9744857 1.3e-05 53_[+1]_59 chr3R:12080731-12080851 1.3e-05 75_[+1]_37 chr3R:5414298-5414418 1.3e-05 9_[+1]_103 chrX:10247494-10247614 1.3e-05 78_[+1]_34 chrX:15633486-15633606 1.3e-05 35_[+1]_77 chr3L:6552541-6552661 1.3e-05 55_[+1]_57 chr2R:14139929-14140049 1.3e-05 68_[+1]_44 chr3R:27426168-27426288 1.3e-05 77_[+1]_35 chr2R:17097763-17097883 1.3e-05 23_[+1]_89 chrX:10620375-10620495 1.3e-05 67_[+1]_45 chrX:541811-541931 1.3e-05 53_[+1]_59 chr3R:22598332-22598452 1.3e-05 76_[+1]_36 chr3R:30881141-30881261 1.3e-05 53_[+1]_59 chr3R:29458155-29458275 1.3e-05 69_[+1]_43 chr3R:21096656-21096776 1.3e-05 41_[+1]_71 chr2R:14959033-14959153 1.3e-05 94_[+1]_18 chr2R:25114380-25114500 1.3e-05 50_[+1]_62 chr3R:28654698-28654818 1.3e-05 78_[+1]_34 chr3R:13258850-13258970 1.3e-05 73_[+1]_39 chr3R:14021046-14021166 1.3e-05 75_[+1]_37 chr3L:4430438-4430558 1.3e-05 48_[+1]_64 chrX:4694214-4694334 1.3e-05 57_[+1]_55 chr2R:23796402-23796522 1.3e-05 85_[+1]_27 chr3L:1637031-1637151 1.3e-05 73_[+1]_39 chr2R:18514897-18515017 1.3e-05 51_[+1]_61 chr3L:21047873-21047993 1.3e-05 66_[+1]_46 chr3L:5657668-5657788 1.3e-05 66_[+1]_46 chr2R:11116455-11116575 1.3e-05 48_[+1]_64 chr3R:20741565-20741685 1.3e-05 41_[+1]_71 chr2L:3730171-3730291 1.3e-05 68_[+1]_44 chr3L:17149967-17150087 1.3e-05 64_[+1]_48 chr2R:12054836-12054956 1.3e-05 60_[+1]_52 chrX:12431852-12431972 1.3e-05 46_[+1]_66 chr3L:3828263-3828383 1.3e-05 45_[+1]_67 chr3R:25783123-25783243 1.3e-05 77_[+1]_35 chr2L:1927530-1927650 1.3e-05 103_[+1]_9 chr2R:21175174-21175294 1.3e-05 72_[+1]_40 chr3R:23228459-23228579 1.3e-05 69_[+1]_43 chrX:11370308-11370428 1.3e-05 53_[+1]_59 chr3R:7750058-7750178 1.3e-05 72_[+1]_40 chr2R:9519428-9519548 1.3e-05 80_[+1]_32 chr2R:9389980-9390100 1.3e-05 74_[+1]_38 chr2R:14715864-14715984 1.3e-05 72_[+1]_40 chr3L:13902054-13902174 1.3e-05 75_[+1]_37 chrX:2255163-2255283 1.3e-05 85_[+1]_27 chr3R:17916692-17916812 1.3e-05 39_[+1]_73 chr2L:2797520-2797640 1.3e-05 68_[+1]_44 chrX:16687525-16687645 1.3e-05 46_[+1]_66 chr2R:12868672-12868792 1.3e-05 45_[+1]_67 chr3L:13904520-13904640 1.3e-05 64_[+1]_48 chr3R:18584667-18584787 1.3e-05 99_[+1]_13 chr3L:6997609-6997729 1.3e-05 53_[+1]_59 chr2R:9566811-9566931 1.3e-05 63_[+1]_49 chr2R:12252924-12253044 1.3e-05 80_[+1]_32 chr3R:14064701-14064821 2.4e-05 12_[+1]_100 chr3R:23965303-23965423 2.4e-05 95_[+1]_17 chrX:8115424-8115544 2.4e-05 20_[+1]_92 chr3L:9340269-9340389 2.4e-05 46_[+1]_66 chrX:7285521-7285641 2.4e-05 37_[+1]_75 chr2L:21151182-21151302 2.4e-05 101_[+1]_11 chr2R:24903309-24903429 2.4e-05 67_[+1]_45 chrX:6317740-6317860 2.4e-05 54_[+1]_58 chr2R:6828219-6828339 2.4e-05 22_[+1]_90 chr3R:21581954-21582074 2.4e-05 88_[+1]_24 chrX:499356-499476 2.4e-05 19_[+1]_93 chr3L:13991471-13991591 2.4e-05 17_[+1]_95 chrX:22712594-22712714 2.4e-05 41_[+1]_71 chr3L:6623806-6623926 2.4e-05 20_[+1]_92 chr3L:9179492-9179612 2.4e-05 42_[+1]_70 chr3R:12467787-12467907 2.4e-05 70_[+1]_42 chr2R:9519628-9519748 2.4e-05 93_[+1]_19 chr2L:9272334-9272454 2.4e-05 102_[+1]_10 chr3R:7974216-7974336 2.4e-05 35_[+1]_77 chr2L:12134114-12134234 2.4e-05 22_[+1]_90 chr3L:21770553-21770673 4e-05 85_[+1]_27 chr3L:13902258-13902378 4e-05 100_[+1]_12 chr2L:20242864-20242984 4e-05 35_[+1]_77 chrX:8414001-8414121 4e-05 74_[+1]_38 chr3R:31822742-31822862 4e-05 46_[+1]_66 chr2R:18406800-18406920 4e-05 74_[+1]_38 chr3L:7313847-7313967 4e-05 87_[+1]_25 chrX:13763270-13763390 4e-05 79_[+1]_33 chr2L:3426044-3426164 4e-05 7_[+1]_105 chr3R:21060074-21060194 4e-05 37_[+1]_75 chr3R:20204610-20204730 4e-05 92_[+1]_20 chr3L:5664699-5664819 4e-05 80_[+1]_32 chr3L:15625369-15625489 5.1e-05 92_[+1]_20 chrX:6757321-6757441 5.1e-05 40_[+1]_72 chrX:1514214-1514334 5.1e-05 62_[+1]_50 chr3L:9190299-9190419 5.1e-05 15_[+1]_97 chr3R:22733155-22733275 6.5e-05 [+1]_112 chr3R:27987907-27988027 7.8e-05 65_[+1]_47 chr3R:11458140-11458260 7.8e-05 85_[+1]_27 chr3L:10658865-10658985 7.8e-05 58_[+1]_54 chrX:11791990-11792110 9.2e-05 101_[+1]_11 chr3R:23239166-23239286 9.2e-05 63_[+1]_49 chr3L:16660940-16661060 9.2e-05 38_[+1]_74 chr3L:625982-626102 0.0001 49_[+1]_63 chr3R:4565452-4565572 0.00011 65_[+1]_47 chr3L:3747407-3747527 0.00011 78_[+1]_34 chr3L:9251757-9251877 0.00012 73_[+1]_39 chr3L:11428542-11428662 0.00014 11_[+1]_101 chr2R:9376758-9376878 0.00014 81_[+1]_31 chr3L:17148817-17148937 0.00014 37_[+1]_75 chr2R:18407714-18407834 0.00016 41_[+1]_71 chr3L:9188328-9188448 0.00016 94_[+1]_18 chr2R:11107592-11107712 0.00018 55_[+1]_57 chr3R:24457619-24457739 0.00018 43_[+1]_69 chr2L:11879058-11879178 0.00018 86_[+1]_26 chr4:388917-389037 0.00021 16_[+1]_96 chr2L:5147675-5147795 0.00023 25_[+1]_87 chr3R:11984592-11984712 0.00026 81_[+1]_31 chr3L:2171005-2171125 0.00026 86_[+1]_26 chr3R:6082272-6082392 0.00026 100_[+1]_12 chr3L:16661142-16661262 0.00026 47_[+1]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTCTCT width=8 seqs=125 chr3L:5665555-5665675 ( 31) CTCTCTCT 1 chr3R:11543212-11543332 ( 105) CTCTCTCT 1 chrX:5637689-5637809 ( 70) CTCTCTCT 1 chrX:3332719-3332839 ( 67) CTCTCTCT 1 chr2R:19395070-19395190 ( 58) CTCTCTCT 1 chr3R:19015532-19015652 ( 58) CTCTCTCT 1 chr3R:30281996-30282116 ( 101) CTCTCTCT 1 chr3L:7847798-7847918 ( 72) CTCTCTCT 1 chr2L:12288646-12288766 ( 49) CTCTCTCT 1 chr2L:487013-487133 ( 47) CTCTCTCT 1 chr2L:9744737-9744857 ( 54) CTCTCTCT 1 chr3R:12080731-12080851 ( 76) CTCTCTCT 1 chr3R:5414298-5414418 ( 10) CTCTCTCT 1 chrX:10247494-10247614 ( 79) CTCTCTCT 1 chrX:15633486-15633606 ( 36) CTCTCTCT 1 chr3L:6552541-6552661 ( 56) CTCTCTCT 1 chr2R:14139929-14140049 ( 69) CTCTCTCT 1 chr3R:27426168-27426288 ( 78) CTCTCTCT 1 chr2R:17097763-17097883 ( 24) CTCTCTCT 1 chrX:10620375-10620495 ( 68) CTCTCTCT 1 chrX:541811-541931 ( 54) CTCTCTCT 1 chr3R:22598332-22598452 ( 77) CTCTCTCT 1 chr3R:30881141-30881261 ( 54) CTCTCTCT 1 chr3R:29458155-29458275 ( 70) CTCTCTCT 1 chr3R:21096656-21096776 ( 42) CTCTCTCT 1 chr2R:14959033-14959153 ( 95) CTCTCTCT 1 chr2R:25114380-25114500 ( 51) CTCTCTCT 1 chr3R:28654698-28654818 ( 79) CTCTCTCT 1 chr3R:13258850-13258970 ( 74) CTCTCTCT 1 chr3R:14021046-14021166 ( 76) CTCTCTCT 1 chr3L:4430438-4430558 ( 49) CTCTCTCT 1 chrX:4694214-4694334 ( 58) CTCTCTCT 1 chr2R:23796402-23796522 ( 86) CTCTCTCT 1 chr3L:1637031-1637151 ( 74) CTCTCTCT 1 chr2R:18514897-18515017 ( 52) CTCTCTCT 1 chr3L:21047873-21047993 ( 67) CTCTCTCT 1 chr3L:5657668-5657788 ( 67) CTCTCTCT 1 chr2R:11116455-11116575 ( 49) CTCTCTCT 1 chr3R:20741565-20741685 ( 42) CTCTCTCT 1 chr2L:3730171-3730291 ( 69) CTCTCTCT 1 chr3L:17149967-17150087 ( 65) CTCTCTCT 1 chr2R:12054836-12054956 ( 61) CTCTCTCT 1 chrX:12431852-12431972 ( 47) CTCTCTCT 1 chr3L:3828263-3828383 ( 46) CTCTCTCT 1 chr3R:25783123-25783243 ( 78) CTCTCTCT 1 chr2L:1927530-1927650 ( 104) CTCTCTCT 1 chr2R:21175174-21175294 ( 73) CTCTCTCT 1 chr3R:23228459-23228579 ( 70) CTCTCTCT 1 chrX:11370308-11370428 ( 54) CTCTCTCT 1 chr3R:7750058-7750178 ( 73) CTCTCTCT 1 chr2R:9519428-9519548 ( 81) CTCTCTCT 1 chr2R:9389980-9390100 ( 75) CTCTCTCT 1 chr2R:14715864-14715984 ( 73) CTCTCTCT 1 chr3L:13902054-13902174 ( 76) CTCTCTCT 1 chrX:2255163-2255283 ( 86) CTCTCTCT 1 chr3R:17916692-17916812 ( 40) CTCTCTCT 1 chr2L:2797520-2797640 ( 69) CTCTCTCT 1 chrX:16687525-16687645 ( 47) CTCTCTCT 1 chr2R:12868672-12868792 ( 46) CTCTCTCT 1 chr3L:13904520-13904640 ( 65) CTCTCTCT 1 chr3R:18584667-18584787 ( 100) CTCTCTCT 1 chr3L:6997609-6997729 ( 54) CTCTCTCT 1 chr2R:9566811-9566931 ( 64) CTCTCTCT 1 chr2R:12252924-12253044 ( 81) CTCTCTCT 1 chr3R:14064701-14064821 ( 13) CGCTCTCT 1 chr3R:23965303-23965423 ( 96) CGCTCTCT 1 chrX:8115424-8115544 ( 21) CGCTCTCT 1 chr3L:9340269-9340389 ( 47) CGCTCTCT 1 chrX:7285521-7285641 ( 38) CGCTCTCT 1 chr2L:21151182-21151302 ( 102) CGCTCTCT 1 chr2R:24903309-24903429 ( 68) CGCTCTCT 1 chrX:6317740-6317860 ( 55) CGCTCTCT 1 chr2R:6828219-6828339 ( 23) CGCTCTCT 1 chr3R:21581954-21582074 ( 89) CGCTCTCT 1 chrX:499356-499476 ( 20) CGCTCTCT 1 chr3L:13991471-13991591 ( 18) CGCTCTCT 1 chrX:22712594-22712714 ( 42) CGCTCTCT 1 chr3L:6623806-6623926 ( 21) CGCTCTCT 1 chr3L:9179492-9179612 ( 43) CGCTCTCT 1 chr3R:12467787-12467907 ( 71) CGCTCTCT 1 chr2R:9519628-9519748 ( 94) CGCTCTCT 1 chr2L:9272334-9272454 ( 103) CGCTCTCT 1 chr3R:7974216-7974336 ( 36) CGCTCTCT 1 chr2L:12134114-12134234 ( 23) CGCTCTCT 1 chr3L:21770553-21770673 ( 86) CTCTCTTT 1 chr3L:13902258-13902378 ( 101) CTCTCTTT 1 chr2L:20242864-20242984 ( 36) CTCTCTTT 1 chrX:8414001-8414121 ( 75) CTCTCTTT 1 chr3R:31822742-31822862 ( 47) CTCTCTTT 1 chr2R:18406800-18406920 ( 75) CTCTCTTT 1 chr3L:7313847-7313967 ( 88) CTCTCTTT 1 chrX:13763270-13763390 ( 80) CTCTCTTT 1 chr2L:3426044-3426164 ( 8) CTCTCTTT 1 chr3R:21060074-21060194 ( 38) CTCTCTTT 1 chr3R:20204610-20204730 ( 93) CTCTCTTT 1 chr3L:5664699-5664819 ( 81) CTCTCTTT 1 chr3L:15625369-15625489 ( 93) CTCTCTCG 1 chrX:6757321-6757441 ( 41) CTCTCTCG 1 chrX:1514214-1514334 ( 63) CTCTCTCG 1 chr3L:9190299-9190419 ( 16) CTCTCTCG 1 chr3R:22733155-22733275 ( 1) CTCTCTCA 1 chr3R:27987907-27988027 ( 66) CGCTCTTT 1 chr3R:11458140-11458260 ( 86) CGCTCTTT 1 chr3L:10658865-10658985 ( 59) CGCTCTTT 1 chrX:11791990-11792110 ( 102) CTCTCACT 1 chr3R:23239166-23239286 ( 64) CTCTCACT 1 chr3L:16660940-16661060 ( 39) CTCTCACT 1 chr3L:625982-626102 ( 50) CGCTCTCG 1 chr3R:4565452-4565572 ( 66) CGCTCTCA 1 chr3L:3747407-3747527 ( 79) CGCTCTCA 1 chr3L:9251757-9251877 ( 74) CTCTCTCC 1 chr3L:11428542-11428662 ( 12) CTTTCTCT 1 chr2R:9376758-9376878 ( 82) CTTTCTCT 1 chr3L:17148817-17148937 ( 38) CTTTCTCT 1 chr2R:18407714-18407834 ( 42) CTCTCTTG 1 chr3L:9188328-9188448 ( 95) CGCTCACT 1 chr2R:11107592-11107712 ( 56) CTCTCTTA 1 chr3R:24457619-24457739 ( 44) CTCTCTTA 1 chr2L:11879058-11879178 ( 87) CTCTCTTA 1 chr4:388917-389037 ( 17) CGCTCTCC 1 chr2L:5147675-5147795 ( 26) CGCTCTTG 1 chr3R:11984592-11984712 ( 82) CGCTCTTA 1 chr3L:2171005-2171125 ( 87) CTCTCACG 1 chr3R:6082272-6082392 ( 101) CGCTCTTA 1 chr3L:16661142-16661262 ( 48) CTCTCACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.9669 E= 9.8e-157 -1361 217 -1361 -1361 -1361 -1361 11 147 -1361 214 -1361 -350 -1361 -1361 -1361 188 -1361 217 -1361 -1361 -253 -1361 -1361 181 -1361 189 -1361 -62 -211 -379 -168 164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 125 E= 9.8e-157 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.248000 0.752000 0.000000 0.976000 0.000000 0.024000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.048000 0.000000 0.000000 0.952000 0.000000 0.824000 0.000000 0.176000 0.064000 0.016000 0.072000 0.848000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 regular expression -------------------------------------------------------------------------------- C[TG]CTCTCT -------------------------------------------------------------------------------- Time 7.58 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAGAGAG MEME-2 width = 8 sites = 140 llr = 1188 E-value = 6.9e-133 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 83a:a:72 pos.-specific C 1:::::3: probability G 17:a:a:8 matrix T :::::::: bits 2.2 * * 2.0 *** 1.7 **** 1.5 **** * Relative 1.3 **** * Entropy 1.1 ******* (12.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAGAG consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13191576-13191696 65 1.65e-05 aggacgaaag agagagag CTTGCAGCCA chr3L:1883323-1883443 55 1.65e-05 ATGTGCCAag agagagag agagggaggt chr3L:13993518-13993638 48 1.65e-05 agagaaggga agagagag ccgagagaga chrX:11372873-11372993 52 1.65e-05 agagtgagag agagagag agagGTGGCG chr2R:19411395-19411515 50 1.65e-05 TGCAACCAAT AGAGAGAG ATATGGAATG chrX:20411784-20411904 62 1.65e-05 gagaatgagg agagagag aatgagagag chr3R:29760146-29760266 61 1.65e-05 ACAAagagag agagagag agagagaagg chr3R:24667961-24668081 69 1.65e-05 tgagccagaa agagagag ggatggagag chr3R:27987907-27988027 26 1.65e-05 GCCAagagag agagagag agagagaaag chrX:19260063-19260183 34 1.65e-05 cgacagagag agagagag agagaaagga chr2R:20943500-20943620 41 1.65e-05 GGAGAACAGG AGAGAGAG AGAGAGCGAC chr3R:6407654-6407774 37 1.65e-05 GAGAGCAGTG AGAGAGAG GCGTCGGCTA chr3L:10722782-10722902 19 1.65e-05 GGATATGgag agagagag agagcgagag chr3R:20739988-20740108 54 1.65e-05 CGTAGCTCAG AGAGAGAG GCTGGGAGAG chr3R:24092727-24092847 55 1.65e-05 GGTCCGCAAG AGAGAGAG TCGTGCGCAG chrX:16562443-16562563 54 1.65e-05 agagagagag agagagag aaaagaagag chr3R:19731013-19731133 42 1.65e-05 tgtgtgtgtg agagagag cgagagcgcg chr3L:2427328-2427448 82 1.65e-05 agagcagagg agagagag agcgaAGTTG chr3R:4797721-4797841 68 1.65e-05 agagagagag agagagag agagTATTGG chr3L:6717121-6717241 29 1.65e-05 agagagagag agagagag agagagCGAG chr3R:28324974-28325094 28 1.65e-05 TCGGGTCAAC AGAGAGAG TCGGAGTGCC chr2R:6828219-6828339 43 1.65e-05 gaggagatag agagagag acagagagag chrX:7629334-7629454 55 1.65e-05 agagagcgag agagagag gagagcgagC chr2L:3766120-3766240 23 1.65e-05 agagagagaa agagagag aTTGGGAAAA chrX:5364194-5364314 62 1.65e-05 agagagggag agagagag agtgaaaatg chr2R:15425054-15425174 61 1.65e-05 agagagtgag agagagag agagagagag chr2L:1663247-1663367 32 1.65e-05 gcaggacagc agagagag tgagctgaag chrX:3292848-3292968 44 1.65e-05 AGCGCgagag agagagag agggagcgag chr2R:12271601-12271721 75 1.65e-05 agagtgtgag agagagag agagcgagag chr3R:17069497-17069617 37 1.65e-05 gagcaaagag agagagag agagagagaa chr3L:11197032-11197152 48 1.65e-05 agagtaagaa agagagag agagcgagTA chr3R:6082272-6082392 7 1.65e-05 TGAAAA AGAGAGAG GAGGGTTACA chr2R:21843189-21843309 29 1.65e-05 GGCAagagag agagagag agagagagag chrX:10245351-10245471 29 1.65e-05 aaagagagag agagagag agagCGCGCT chr3L:3757821-3757941 45 1.65e-05 CTTAACAGAG AGAGAGAG AGAGCAAAAT chr3R:24260579-24260699 72 1.65e-05 agagagagag agagagag aaaaagatag chr2R:9376758-9376878 56 1.65e-05 agagagagag agagagag agagcgagag chr2R:11232005-11232125 33 1.65e-05 GCTgagagag agagagag agactgacag chr3L:12892528-12892648 55 1.65e-05 agagagagcg agagagag agagagaTGT chr3R:27157675-27157795 45 1.65e-05 CAAGAGAATG AGAGAGAG CGGCTTGGGA chr3L:2896513-2896633 70 1.65e-05 tagcagagcg agagagag tgagagcacg chr3R:9359515-9359635 31 1.65e-05 GACACgagcg agagagag tatagctata chrX:17963460-17963580 28 1.65e-05 Ggagagagag agagagag ggcaagggct chr3R:9979486-9979606 72 1.65e-05 TGATGAACGg agagagag agagagagag chr3R:20204610-20204730 47 1.65e-05 agagagagag agagagag agagagCTTT chrX:9190803-9190923 68 1.65e-05 agagagagag agagagag agaAAAGTGG chr3L:17148817-17148937 59 1.65e-05 TCTCTCGAAA AGAGAGAG CAAAAGCGAG chr2R:24712821-24712941 65 1.65e-05 agagagagag agagagag agGGCGTCCT chr3L:19432364-19432484 72 1.65e-05 attgagaaaa agagagag cagagCACGT chr3R:10035314-10035434 47 1.65e-05 agagagagag agagagag agagagagag chrX:9588679-9588799 65 1.65e-05 agcgagagaa agagagag agGATTACTA chr2L:12134114-12134234 53 1.65e-05 TTAAGCTTTC AGAGAGAG CTTTTTTTTA chrX:2743743-2743863 59 1.65e-05 ATGgagagag agagagag agagagaggg chr3R:14986264-14986384 62 1.65e-05 agcgaaagag agagagag agagagagaa chrX:3190961-3191081 53 1.65e-05 GAGAATTGCA agagagag agagagagag chr2L:21221919-21222039 76 1.65e-05 GCTCAATGGC AGAGAGAG CACTGCGATT chr3L:5665555-5665675 77 2.97e-05 AAGGAAAACG AGAGAGCG AGTCCTTTGC chr3R:18450419-18450539 112 2.97e-05 AATGCGAGAA AGAGAGCG A chr3R:19503445-19503565 94 2.97e-05 CAAATCTAAA agagagcg agaaagtggg chr3L:7313019-7313139 78 2.97e-05 CGAGAGCCGC AGAGAGCG AGAGTGTGTG chr3L:2169182-2169302 54 2.97e-05 ACCAACTATA AGAGAGCG AAGAATTTGT chr2L:13332036-13332156 66 2.97e-05 TGGCCAAGCG AGAGAGCG AGCTCTCCGC chr2R:11107592-11107712 43 2.97e-05 AAGCCGGCTA AGAGAGCG AGATACTCTC chr3L:2171005-2171125 52 2.97e-05 TTAATAATTA AGAGAGCG AGATAAGATT chr3R:12653635-12653755 33 2.97e-05 CAGGGCGATC AGAGAGCG GCAATATTAC chr3L:13991471-13991591 58 2.97e-05 AGCAAGTCGG AGAGAGCG GAAGAGCGGT chrX:6757321-6757441 67 2.97e-05 ttcgagagcg agagagcg gagagcgcta chr3R:23239166-23239286 10 2.97e-05 atgggagta agagagcg agagcttgga chr3R:22733155-22733275 25 2.97e-05 ttcaagagcg agagagcg gagagctcta chr3R:9460763-9460883 46 2.97e-05 gtgagagaga agagagCG TAGCAGGATA chrX:3295643-3295763 17 2.97e-05 aATTTCAGGA AGAGAGCG GCAGAGCAAA chr3L:9188328-9188448 40 2.97e-05 atagtggggg agagagcg ggagagagTC chr2L:21618055-21618175 65 4.95e-05 CCTAGGTATT AAAGAGAG GGTGGAGGGA chr3R:17920452-17920572 80 4.95e-05 CATTACTGCG AAAGAGAG CCAGAGTCGG chr3R:11982666-11982786 38 4.95e-05 GCCTCTTATC AAAGAGAG AATAGTTCTG chr3R:4565452-4565572 88 4.95e-05 gagtgagcgg aaagagag taattttggc chr2L:20242864-20242984 101 4.95e-05 ACTCACCACT AAAGAGAG TGACTAAATT chr3L:3763313-3763433 77 4.95e-05 GCAAAAAGGG AAAGAGAG CCGCCCAATG chr3L:15090425-15090545 44 4.95e-05 GGAGAGTCCA AAAGAGAG AATTCAATGT chr2L:16720298-16720418 36 4.95e-05 TTACATGAGC AAAGAGAG TGGCGTACCC chr3L:21319477-21319597 83 4.95e-05 GAAAGTAACA AAAGAGAG ACACAGCTTA chr3L:8285455-8285575 91 4.95e-05 AAGGCCAAAA AAAGAGAG CAGGAGAAAG chr3L:11428542-11428662 63 4.95e-05 AATTGAAAAA AAAGAGAG CAACAATTTC chr2L:4281936-4282056 46 4.95e-05 TCAGAGAGCA AAAGAGAG AAAGAGGCCA chrX:7695924-7696044 102 4.95e-05 ACAGCCGGAG AAAGAGAG GGATATAAAC chrX:6860723-6860843 75 4.95e-05 GGTGGCATCG AAAGAGAG GAGAGGACAG chrX:17291761-17291881 37 4.95e-05 GAAGCCGTGC AAAGAGAG GCAGACGAAC chr2L:13084522-13084642 54 4.95e-05 ACACCGATAG AAAGAGAG ACGAAGAGAG chr3R:24485121-24485241 106 4.95e-05 AGTGTGTGGC AAAGAGAG CATCCGT chr2L:11879058-11879178 42 4.95e-05 AGAGAGTAGT AAAGAGAG CCACAATATT chr3L:10658865-10658985 26 4.95e-05 AACAGCATTT AAAGAGAG CAAAAGATAG chrX:12471927-12472047 38 4.95e-05 AAAAGTGCAA AAAGAGAG GGAAAAATTA chr3L:9190299-9190419 111 4.95e-05 AAAGCCATGG AAAGAGAG AA chr2L:13113702-13113822 52 4.95e-05 GGTGTCTACC AAAGAGAG TATCTCTGAG chr3R:22998246-22998366 9 6.54e-05 ATAATGCC AAAGAGCG ACAACTGCTG chrX:19690190-19690310 106 6.54e-05 GACAAAGTCA AAAGAGCG CCAAATC chr2L:10757197-10757317 23 6.54e-05 AAAAGCGCCA AAAGAGCG GATGCACAAC chr3R:25783123-25783243 8 8.53e-05 TTTTTGC AGAGAGAA CCAGTGAGAA chr3R:13240565-13240685 70 8.53e-05 agccaggagc agagagaa agcggaaagc chr4:276469-276589 87 9.85e-05 TGGAACTAAA CGAGAGAG CTCATTGAAA chrX:22712594-22712714 68 9.85e-05 aacaaacatt cgagagag cctggagcca chr3R:7974216-7974336 62 9.85e-05 aacaaaaatt cgagagag cctggagcca chr3R:21060074-21060194 68 1.12e-04 GAGAGCGGAC GGAGAGAG GGTGCACCAC chr2L:19519740-19519860 52 1.28e-04 AAGTTCTCGC AGAGAGCA TGCGTTCGCC chr3L:16029114-16029234 66 1.28e-04 CGGCGCAAAC AGAGAGCA GCATCTTTTC chr2L:15332709-15332829 20 1.39e-04 GAGAAAATTT CGAGAGCG AAACAGAAAC chr2L:12504150-12504270 113 1.39e-04 TCTATGCgag cgagagcg chr2R:13620361-13620481 42 1.73e-04 AACAAAACGC AAAGAGAA TTGGCACTTC chr3R:24862730-24862850 73 1.73e-04 GACCTATTTT GGAGAGCG GTTAAGATCT chr2R:17802529-17802649 74 1.73e-04 catgtctctc ggagagcg tgagcttaaa chr2L:17621334-17621454 54 1.73e-04 CAGTTAAAAG AAAGAGAA TCGTGGCTAA chr2L:3730171-3730291 30 1.73e-04 TTTTTCGGGA GGAGAGCG GATCTAGAAA chr2R:12045059-12045179 51 1.89e-04 CTTCAGAACT CAAGAGAG CCAAAAGCTC chr3L:1275730-1275850 19 1.89e-04 GCGATTTTTC CAAGAGAG GACCATGTGC chrX:1514214-1514334 87 2.22e-04 tgttagagtg tgagagag ctgagagcgc chr2R:24903309-24903429 42 2.54e-04 GGTTATGTCG AAAGAGCA CGCTTGCCCT chr3L:6623806-6623926 96 2.54e-04 CTTTTAGTAC AAAGAGCA CAGCATCCCT chr3L:9179492-9179612 23 2.54e-04 CATTTTCTGC AAAGAGCA AAGAAGCTCT chr2R:18407714-18407834 14 2.54e-04 TAAAAATACT AAAGAGCA CCTCGCCAGG chr2L:2798986-2799106 110 2.54e-04 TCCTTGCCCA AAAGAGCA TGT chr2L:6874216-6874336 83 2.93e-04 ATACACACAC GAAGAGCG ACTCTCACAA chr2L:2797520-2797640 11 2.93e-04 TGGAAAACTA TGAGAGCG GAAGGATGGA chr2L:10757419-10757539 22 3.20e-04 ATGGCCAAGA AGCGAGCG GAAAAAAAGT chr3R:12467787-12467907 85 3.87e-04 CTCTCGAACC AACGAGAG CAGTATGTCG chr2L:9272334-9272454 27 3.87e-04 AGCACGCCGA AACGAGAG ACAGTCTTTG chr2R:12054836-12054956 39 4.00e-04 AGGAGCCTTA ACAGAGCG ctcgctctct chr3L:21193674-21193794 51 4.00e-04 GCCAACCAAA ACAGAGCG GCAAACCGAA chr3R:24457619-24457739 107 4.28e-04 GTCTACAAAC CGAGAGCA TCCTTC chr2R:18406800-18406920 20 4.28e-04 ATAGAAGAGG CGAGAGCA AAAACCTAAC chr2L:20829481-20829601 78 4.28e-04 CTTTTAAGCC TAAGAGCG GGGCACAGAA chr3R:5414298-5414418 92 4.42e-04 CCTCagcaga ggagagca gggcagagga chr2R:21175174-21175294 12 4.42e-04 CACAATAGCC GGAGAGCA ATTACAGTTA chr2L:1927530-1927650 91 4.54e-04 ACAGGTCTCA AACGAGCG TTTTCCTCTC chr3R:12080731-12080851 62 4.74e-04 ATTGAACAAG CAAGAGAA AGCGTGCTCT chr3R:11984592-11984712 70 5.13e-04 ATAAGCTGTG GAAGAGAA GGTTCGCTCT chr4:388917-389037 109 5.13e-04 AGATGTAGTA GAAGAGAA ACGA chr3R:9866394-9866514 111 5.13e-04 CGATTGCAAA TGAGAGAA TG chr3R:18094790-18094910 72 5.13e-04 GTGGAGAAAA TGAGAGAA Atgtgtgtgt chrX:12869686-12869806 85 5.13e-04 GGAAAAACAT GAAGAGAA AAAAATATTT chr3L:3747407-3747527 1 5.55e-04 . CAAGAGCA GGAAAAGCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13191576-13191696 1.6e-05 64_[+2]_48 chr3L:1883323-1883443 1.6e-05 54_[+2]_58 chr3L:13993518-13993638 1.6e-05 47_[+2]_65 chrX:11372873-11372993 1.6e-05 51_[+2]_61 chr2R:19411395-19411515 1.6e-05 49_[+2]_63 chrX:20411784-20411904 1.6e-05 61_[+2]_51 chr3R:29760146-29760266 1.6e-05 60_[+2]_52 chr3R:24667961-24668081 1.6e-05 68_[+2]_44 chr3R:27987907-27988027 1.6e-05 25_[+2]_87 chrX:19260063-19260183 1.6e-05 33_[+2]_79 chr2R:20943500-20943620 1.6e-05 40_[+2]_72 chr3R:6407654-6407774 1.6e-05 36_[+2]_76 chr3L:10722782-10722902 1.6e-05 18_[+2]_94 chr3R:20739988-20740108 1.6e-05 53_[+2]_59 chr3R:24092727-24092847 1.6e-05 54_[+2]_58 chrX:16562443-16562563 1.6e-05 53_[+2]_59 chr3R:19731013-19731133 1.6e-05 41_[+2]_71 chr3L:2427328-2427448 1.6e-05 81_[+2]_31 chr3R:4797721-4797841 1.6e-05 67_[+2]_45 chr3L:6717121-6717241 1.6e-05 28_[+2]_84 chr3R:28324974-28325094 1.6e-05 27_[+2]_85 chr2R:6828219-6828339 1.6e-05 42_[+2]_70 chrX:7629334-7629454 1.6e-05 54_[+2]_58 chr2L:3766120-3766240 1.6e-05 22_[+2]_90 chrX:5364194-5364314 1.6e-05 61_[+2]_51 chr2R:15425054-15425174 1.6e-05 60_[+2]_52 chr2L:1663247-1663367 1.6e-05 31_[+2]_81 chrX:3292848-3292968 1.6e-05 43_[+2]_69 chr2R:12271601-12271721 1.6e-05 74_[+2]_38 chr3R:17069497-17069617 1.6e-05 36_[+2]_76 chr3L:11197032-11197152 1.6e-05 47_[+2]_65 chr3R:6082272-6082392 1.6e-05 6_[+2]_106 chr2R:21843189-21843309 1.6e-05 28_[+2]_84 chrX:10245351-10245471 1.6e-05 28_[+2]_84 chr3L:3757821-3757941 1.6e-05 44_[+2]_68 chr3R:24260579-24260699 1.6e-05 71_[+2]_41 chr2R:9376758-9376878 1.6e-05 55_[+2]_57 chr2R:11232005-11232125 1.6e-05 32_[+2]_80 chr3L:12892528-12892648 1.6e-05 54_[+2]_58 chr3R:27157675-27157795 1.6e-05 44_[+2]_68 chr3L:2896513-2896633 1.6e-05 69_[+2]_43 chr3R:9359515-9359635 1.6e-05 30_[+2]_82 chrX:17963460-17963580 1.6e-05 27_[+2]_85 chr3R:9979486-9979606 1.6e-05 71_[+2]_41 chr3R:20204610-20204730 1.6e-05 46_[+2]_66 chrX:9190803-9190923 1.6e-05 67_[+2]_45 chr3L:17148817-17148937 1.6e-05 58_[+2]_54 chr2R:24712821-24712941 1.6e-05 64_[+2]_48 chr3L:19432364-19432484 1.6e-05 71_[+2]_41 chr3R:10035314-10035434 1.6e-05 46_[+2]_66 chrX:9588679-9588799 1.6e-05 64_[+2]_48 chr2L:12134114-12134234 1.6e-05 52_[+2]_60 chrX:2743743-2743863 1.6e-05 58_[+2]_54 chr3R:14986264-14986384 1.6e-05 61_[+2]_51 chrX:3190961-3191081 1.6e-05 52_[+2]_60 chr2L:21221919-21222039 1.6e-05 75_[+2]_37 chr3L:5665555-5665675 3e-05 76_[+2]_36 chr3R:18450419-18450539 3e-05 111_[+2]_1 chr3R:19503445-19503565 3e-05 93_[+2]_19 chr3L:7313019-7313139 3e-05 77_[+2]_35 chr3L:2169182-2169302 3e-05 53_[+2]_59 chr2L:13332036-13332156 3e-05 65_[+2]_47 chr2R:11107592-11107712 3e-05 42_[+2]_70 chr3L:2171005-2171125 3e-05 51_[+2]_61 chr3R:12653635-12653755 3e-05 32_[+2]_80 chr3L:13991471-13991591 3e-05 57_[+2]_55 chrX:6757321-6757441 3e-05 66_[+2]_46 chr3R:23239166-23239286 3e-05 9_[+2]_103 chr3R:22733155-22733275 3e-05 24_[+2]_88 chr3R:9460763-9460883 3e-05 45_[+2]_67 chrX:3295643-3295763 3e-05 16_[+2]_96 chr3L:9188328-9188448 3e-05 39_[+2]_73 chr2L:21618055-21618175 5e-05 64_[+2]_48 chr3R:17920452-17920572 5e-05 79_[+2]_33 chr3R:11982666-11982786 5e-05 37_[+2]_75 chr3R:4565452-4565572 5e-05 87_[+2]_25 chr2L:20242864-20242984 5e-05 100_[+2]_12 chr3L:3763313-3763433 5e-05 76_[+2]_36 chr3L:15090425-15090545 5e-05 43_[+2]_69 chr2L:16720298-16720418 5e-05 35_[+2]_77 chr3L:21319477-21319597 5e-05 82_[+2]_30 chr3L:8285455-8285575 5e-05 90_[+2]_22 chr3L:11428542-11428662 5e-05 62_[+2]_50 chr2L:4281936-4282056 5e-05 45_[+2]_67 chrX:7695924-7696044 5e-05 101_[+2]_11 chrX:6860723-6860843 5e-05 74_[+2]_38 chrX:17291761-17291881 5e-05 36_[+2]_76 chr2L:13084522-13084642 5e-05 53_[+2]_59 chr3R:24485121-24485241 5e-05 105_[+2]_7 chr2L:11879058-11879178 5e-05 41_[+2]_71 chr3L:10658865-10658985 5e-05 25_[+2]_87 chrX:12471927-12472047 5e-05 37_[+2]_75 chr3L:9190299-9190419 5e-05 110_[+2]_2 chr2L:13113702-13113822 5e-05 51_[+2]_61 chr3R:22998246-22998366 6.5e-05 8_[+2]_104 chrX:19690190-19690310 6.5e-05 105_[+2]_7 chr2L:10757197-10757317 6.5e-05 22_[+2]_90 chr3R:25783123-25783243 8.5e-05 7_[+2]_105 chr3R:13240565-13240685 8.5e-05 69_[+2]_43 chr4:276469-276589 9.8e-05 86_[+2]_26 chrX:22712594-22712714 9.8e-05 67_[+2]_45 chr3R:7974216-7974336 9.8e-05 61_[+2]_51 chr3R:21060074-21060194 0.00011 67_[+2]_45 chr2L:19519740-19519860 0.00013 51_[+2]_61 chr3L:16029114-16029234 0.00013 65_[+2]_47 chr2L:15332709-15332829 0.00014 19_[+2]_93 chr2L:12504150-12504270 0.00014 112_[+2] chr2R:13620361-13620481 0.00017 41_[+2]_71 chr3R:24862730-24862850 0.00017 72_[+2]_40 chr2R:17802529-17802649 0.00017 73_[+2]_39 chr2L:17621334-17621454 0.00017 53_[+2]_59 chr2L:3730171-3730291 0.00017 29_[+2]_83 chr2R:12045059-12045179 0.00019 50_[+2]_62 chr3L:1275730-1275850 0.00019 18_[+2]_94 chrX:1514214-1514334 0.00022 86_[+2]_26 chr2R:24903309-24903429 0.00025 41_[+2]_71 chr3L:6623806-6623926 0.00025 95_[+2]_17 chr3L:9179492-9179612 0.00025 22_[+2]_90 chr2R:18407714-18407834 0.00025 13_[+2]_99 chr2L:2798986-2799106 0.00025 109_[+2]_3 chr2L:6874216-6874336 0.00029 82_[+2]_30 chr2L:2797520-2797640 0.00029 10_[+2]_102 chr2L:10757419-10757539 0.00032 21_[+2]_91 chr3R:12467787-12467907 0.00039 84_[+2]_28 chr2L:9272334-9272454 0.00039 26_[+2]_86 chr2R:12054836-12054956 0.0004 38_[+2]_74 chr3L:21193674-21193794 0.0004 50_[+2]_62 chr3R:24457619-24457739 0.00043 106_[+2]_6 chr2R:18406800-18406920 0.00043 19_[+2]_93 chr2L:20829481-20829601 0.00043 77_[+2]_35 chr3R:5414298-5414418 0.00044 91_[+2]_21 chr2R:21175174-21175294 0.00044 11_[+2]_101 chr2L:1927530-1927650 0.00045 90_[+2]_22 chr3R:12080731-12080851 0.00047 61_[+2]_51 chr3R:11984592-11984712 0.00051 69_[+2]_43 chr4:388917-389037 0.00051 108_[+2]_4 chr3R:9866394-9866514 0.00051 110_[+2]_2 chr3R:18094790-18094910 0.00051 71_[+2]_41 chrX:12869686-12869806 0.00051 84_[+2]_28 chr3L:3747407-3747527 0.00055 [+2]_112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGAGAG width=8 seqs=140 chr2R:13191576-13191696 ( 65) AGAGAGAG 1 chr3L:1883323-1883443 ( 55) AGAGAGAG 1 chr3L:13993518-13993638 ( 48) AGAGAGAG 1 chrX:11372873-11372993 ( 52) AGAGAGAG 1 chr2R:19411395-19411515 ( 50) AGAGAGAG 1 chrX:20411784-20411904 ( 62) AGAGAGAG 1 chr3R:29760146-29760266 ( 61) AGAGAGAG 1 chr3R:24667961-24668081 ( 69) AGAGAGAG 1 chr3R:27987907-27988027 ( 26) AGAGAGAG 1 chrX:19260063-19260183 ( 34) AGAGAGAG 1 chr2R:20943500-20943620 ( 41) AGAGAGAG 1 chr3R:6407654-6407774 ( 37) AGAGAGAG 1 chr3L:10722782-10722902 ( 19) AGAGAGAG 1 chr3R:20739988-20740108 ( 54) AGAGAGAG 1 chr3R:24092727-24092847 ( 55) AGAGAGAG 1 chrX:16562443-16562563 ( 54) AGAGAGAG 1 chr3R:19731013-19731133 ( 42) AGAGAGAG 1 chr3L:2427328-2427448 ( 82) AGAGAGAG 1 chr3R:4797721-4797841 ( 68) AGAGAGAG 1 chr3L:6717121-6717241 ( 29) AGAGAGAG 1 chr3R:28324974-28325094 ( 28) AGAGAGAG 1 chr2R:6828219-6828339 ( 43) AGAGAGAG 1 chrX:7629334-7629454 ( 55) AGAGAGAG 1 chr2L:3766120-3766240 ( 23) AGAGAGAG 1 chrX:5364194-5364314 ( 62) AGAGAGAG 1 chr2R:15425054-15425174 ( 61) AGAGAGAG 1 chr2L:1663247-1663367 ( 32) AGAGAGAG 1 chrX:3292848-3292968 ( 44) AGAGAGAG 1 chr2R:12271601-12271721 ( 75) AGAGAGAG 1 chr3R:17069497-17069617 ( 37) AGAGAGAG 1 chr3L:11197032-11197152 ( 48) AGAGAGAG 1 chr3R:6082272-6082392 ( 7) AGAGAGAG 1 chr2R:21843189-21843309 ( 29) AGAGAGAG 1 chrX:10245351-10245471 ( 29) AGAGAGAG 1 chr3L:3757821-3757941 ( 45) AGAGAGAG 1 chr3R:24260579-24260699 ( 72) AGAGAGAG 1 chr2R:9376758-9376878 ( 56) AGAGAGAG 1 chr2R:11232005-11232125 ( 33) AGAGAGAG 1 chr3L:12892528-12892648 ( 55) AGAGAGAG 1 chr3R:27157675-27157795 ( 45) AGAGAGAG 1 chr3L:2896513-2896633 ( 70) AGAGAGAG 1 chr3R:9359515-9359635 ( 31) AGAGAGAG 1 chrX:17963460-17963580 ( 28) AGAGAGAG 1 chr3R:9979486-9979606 ( 72) AGAGAGAG 1 chr3R:20204610-20204730 ( 47) AGAGAGAG 1 chrX:9190803-9190923 ( 68) AGAGAGAG 1 chr3L:17148817-17148937 ( 59) AGAGAGAG 1 chr2R:24712821-24712941 ( 65) AGAGAGAG 1 chr3L:19432364-19432484 ( 72) AGAGAGAG 1 chr3R:10035314-10035434 ( 47) AGAGAGAG 1 chrX:9588679-9588799 ( 65) AGAGAGAG 1 chr2L:12134114-12134234 ( 53) AGAGAGAG 1 chrX:2743743-2743863 ( 59) AGAGAGAG 1 chr3R:14986264-14986384 ( 62) AGAGAGAG 1 chrX:3190961-3191081 ( 53) AGAGAGAG 1 chr2L:21221919-21222039 ( 76) AGAGAGAG 1 chr3L:5665555-5665675 ( 77) AGAGAGCG 1 chr3R:18450419-18450539 ( 112) AGAGAGCG 1 chr3R:19503445-19503565 ( 94) AGAGAGCG 1 chr3L:7313019-7313139 ( 78) AGAGAGCG 1 chr3L:2169182-2169302 ( 54) AGAGAGCG 1 chr2L:13332036-13332156 ( 66) AGAGAGCG 1 chr2R:11107592-11107712 ( 43) AGAGAGCG 1 chr3L:2171005-2171125 ( 52) AGAGAGCG 1 chr3R:12653635-12653755 ( 33) AGAGAGCG 1 chr3L:13991471-13991591 ( 58) AGAGAGCG 1 chrX:6757321-6757441 ( 67) AGAGAGCG 1 chr3R:23239166-23239286 ( 10) AGAGAGCG 1 chr3R:22733155-22733275 ( 25) AGAGAGCG 1 chr3R:9460763-9460883 ( 46) AGAGAGCG 1 chrX:3295643-3295763 ( 17) AGAGAGCG 1 chr3L:9188328-9188448 ( 40) AGAGAGCG 1 chr2L:21618055-21618175 ( 65) AAAGAGAG 1 chr3R:17920452-17920572 ( 80) AAAGAGAG 1 chr3R:11982666-11982786 ( 38) AAAGAGAG 1 chr3R:4565452-4565572 ( 88) AAAGAGAG 1 chr2L:20242864-20242984 ( 101) AAAGAGAG 1 chr3L:3763313-3763433 ( 77) AAAGAGAG 1 chr3L:15090425-15090545 ( 44) AAAGAGAG 1 chr2L:16720298-16720418 ( 36) AAAGAGAG 1 chr3L:21319477-21319597 ( 83) AAAGAGAG 1 chr3L:8285455-8285575 ( 91) AAAGAGAG 1 chr3L:11428542-11428662 ( 63) AAAGAGAG 1 chr2L:4281936-4282056 ( 46) AAAGAGAG 1 chrX:7695924-7696044 ( 102) AAAGAGAG 1 chrX:6860723-6860843 ( 75) AAAGAGAG 1 chrX:17291761-17291881 ( 37) AAAGAGAG 1 chr2L:13084522-13084642 ( 54) AAAGAGAG 1 chr3R:24485121-24485241 ( 106) AAAGAGAG 1 chr2L:11879058-11879178 ( 42) AAAGAGAG 1 chr3L:10658865-10658985 ( 26) AAAGAGAG 1 chrX:12471927-12472047 ( 38) AAAGAGAG 1 chr3L:9190299-9190419 ( 111) AAAGAGAG 1 chr2L:13113702-13113822 ( 52) AAAGAGAG 1 chr3R:22998246-22998366 ( 9) AAAGAGCG 1 chrX:19690190-19690310 ( 106) AAAGAGCG 1 chr2L:10757197-10757317 ( 23) AAAGAGCG 1 chr3R:25783123-25783243 ( 8) AGAGAGAA 1 chr3R:13240565-13240685 ( 70) AGAGAGAA 1 chr4:276469-276589 ( 87) CGAGAGAG 1 chrX:22712594-22712714 ( 68) CGAGAGAG 1 chr3R:7974216-7974336 ( 62) CGAGAGAG 1 chr3R:21060074-21060194 ( 68) GGAGAGAG 1 chr2L:19519740-19519860 ( 52) AGAGAGCA 1 chr3L:16029114-16029234 ( 66) AGAGAGCA 1 chr2L:15332709-15332829 ( 20) CGAGAGCG 1 chr2L:12504150-12504270 ( 113) CGAGAGCG 1 chr2R:13620361-13620481 ( 42) AAAGAGAA 1 chr3R:24862730-24862850 ( 73) GGAGAGCG 1 chr2R:17802529-17802649 ( 74) GGAGAGCG 1 chr2L:17621334-17621454 ( 54) AAAGAGAA 1 chr2L:3730171-3730291 ( 30) GGAGAGCG 1 chr2R:12045059-12045179 ( 51) CAAGAGAG 1 chr3L:1275730-1275850 ( 19) CAAGAGAG 1 chrX:1514214-1514334 ( 87) TGAGAGAG 1 chr2R:24903309-24903429 ( 42) AAAGAGCA 1 chr3L:6623806-6623926 ( 96) AAAGAGCA 1 chr3L:9179492-9179612 ( 23) AAAGAGCA 1 chr2R:18407714-18407834 ( 14) AAAGAGCA 1 chr2L:2798986-2799106 ( 110) AAAGAGCA 1 chr2L:6874216-6874336 ( 83) GAAGAGCG 1 chr2L:2797520-2797640 ( 11) TGAGAGCG 1 chr2L:10757419-10757539 ( 22) AGCGAGCG 1 chr3R:12467787-12467907 ( 85) AACGAGAG 1 chr2L:9272334-9272454 ( 27) AACGAGAG 1 chr2R:12054836-12054956 ( 39) ACAGAGCG 1 chr3L:21193674-21193794 ( 51) ACAGAGCG 1 chr3R:24457619-24457739 ( 107) CGAGAGCA 1 chr2R:18406800-18406920 ( 20) CGAGAGCA 1 chr2L:20829481-20829601 ( 78) TAAGAGCG 1 chr3R:5414298-5414418 ( 92) GGAGAGCA 1 chr2R:21175174-21175294 ( 12) GGAGAGCA 1 chr2L:1927530-1927650 ( 91) AACGAGCG 1 chr3R:12080731-12080851 ( 62) CAAGAGAA 1 chr3R:11984592-11984712 ( 70) GAAGAGAA 1 chr4:388917-389037 ( 109) GAAGAGAA 1 chr3R:9866394-9866514 ( 111) TGAGAGAA 1 chr3R:18094790-18094910 ( 72) TGAGAGAA 1 chrX:12869686-12869806 ( 85) GAAGAGAA 1 chr3L:3747407-3747527 ( 1) CAAGAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.47448 E= 6.9e-133 156 -150 -169 -293 18 -396 154 -1377 181 -296 -1377 -1377 -1377 -1377 212 -1377 185 -1377 -1377 -1377 -1377 -1377 212 -1377 132 47 -1377 -1377 -82 -1377 187 -1377 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 140 E= 6.9e-133 0.814286 0.078571 0.071429 0.035714 0.314286 0.014286 0.671429 0.000000 0.971429 0.028571 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.692857 0.307143 0.000000 0.000000 0.157143 0.000000 0.842857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-2 regular expression -------------------------------------------------------------------------------- A[GA]AGAG[AC]G -------------------------------------------------------------------------------- Time 13.75 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCTCTC MEME-3 width = 8 sites = 94 llr = 835 E-value = 3.2e-079 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 181a:a:a probability G 311::::: matrix T 619:a:a: bits 2.2 * 2.0 *** * 1.7 *** * 1.5 ***** Relative 1.3 ******* Entropy 1.1 ******* (12.8 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCTC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5665555-5665675 40 1.31e-05 tctctctctc tctctctc AGCAAACACA chr3R:11543212-11543332 94 1.31e-05 tctccctcgc tctctctc tctctctctc chr3R:23965303-23965423 72 1.31e-05 ACGCGTGCCT TCTCTCTC GCGCAGCCCC chrX:5637689-5637809 47 1.31e-05 cctcgcgctt tctctctc gctttcgctc chrX:3332719-3332839 84 1.31e-05 tacccctctg tctctctc tctcgctccc chr3R:19015532-19015652 45 1.31e-05 CTActcactc tctctctc tctccctctc chr2L:487013-487133 82 1.31e-05 tctctctctc tctctctc cctctTTATG chr3R:5414298-5414418 19 1.31e-05 Gctctctctc tctctctc gctctcGAAG chrX:10247494-10247614 12 1.31e-05 CCTCTCTGGG TCTCTCTC CATTTTACCC chrX:15633486-15633606 47 1.31e-05 tctctctctc tctctctc tGGTGCCATC chr3R:27426168-27426288 53 1.31e-05 tctctctctc tctctctc tctctctctc chrX:10620375-10620495 109 1.31e-05 tctctcccct tctctctc gcgc chrX:541811-541931 43 1.31e-05 TATGGGCAtc tctctctc tctctctctc chr3R:22598332-22598452 112 1.31e-05 CATTTCCGAc tctctctc t chr3R:29458155-29458275 43 1.31e-05 CGAGTAtctc tctctctc tcgccgagga chr2R:25114380-25114500 62 1.31e-05 tctctctctc tctctctc tTGCTGGTCT chr3R:13258850-13258970 34 1.31e-05 tttctctccc tctctctc GACAGCTTTT chr3L:4430438-4430558 36 1.31e-05 tatctctctc tctctctc tcttgctctc chr2R:23796402-23796522 99 1.31e-05 tctctctctc tctctctc gcactctctc chr3L:1637031-1637151 57 1.31e-05 CGCTtctctc tctctctc tctgtttctc chr2R:18514897-18515017 63 1.31e-05 tctctctatc tctctctc AGGACAGACT chr3L:21047873-21047993 54 1.31e-05 TCTCATtctc tctctctc tctctctctc chr2R:12054836-12054956 52 1.31e-05 GAGCGctcgc tctctctc tctctctctc chrX:12431852-12431972 26 1.31e-05 tctcgatctc tctctctc tccatctatg chr3L:3828263-3828383 57 1.31e-05 tctctctctc tctctctc GCGTGCGCGT chr3R:25783123-25783243 67 1.31e-05 tctctctctc tctctctc tctctctctc chr3R:23228459-23228579 85 1.31e-05 tctctctctc tctctctc tttctctttc chr2R:9389980-9390100 19 1.31e-05 CGTGAGAATT tctctctc gatcattctc chr2R:14715864-14715984 88 1.31e-05 tctctctccc tctctctc tctGGTTTTC chrX:2255163-2255283 111 1.31e-05 tctctctctc tctctctc tc chr3R:17916692-17916812 51 1.31e-05 tctctctctc tctctctc tcACACACAC chr2L:2797520-2797640 58 1.31e-05 TGCCCACAGc tctctctc tctctctctc chrX:16687525-16687645 56 1.31e-05 tctctctctc tctctctc tctctctctG chr3L:13904520-13904640 74 1.31e-05 tctctctctg tctctctc tctctTTTGT chr2R:9566811-9566931 49 1.31e-05 GAGctctctc tctctctc tctctctctc chrX:8115424-8115544 32 2.42e-05 GCTCTCTGCC GCTCTCTC GCTGCAGTTT chr2R:19395070-19395190 77 2.42e-05 tctctcgctt gctctctc CGCTTGCCAA chr3L:7847798-7847918 59 2.42e-05 GCAACCGATA GCTCTCTC GCCCGCTCTC chr2L:12288646-12288766 40 2.42e-05 AACGctcttt gctctctc tctctctctc chr3R:21096656-21096776 51 2.42e-05 ACTCTCTCTG GCTCTCTC CATTTGGCAC chr2R:14959033-14959153 84 2.42e-05 CTGGGGAAAT Gctctctc gctctctctc chrX:499356-499476 12 2.42e-05 CGTTCTTTCA Gctctctc cgctctcttc chrX:4694214-4694334 49 2.42e-05 ctttctctcc gctctctc gctctctctc chr2R:11116455-11116575 30 2.42e-05 TTGCGAACTC GCTCTCTC CGGGCCGCTC chr2L:3730171-3730291 49 2.42e-05 ATCTAGAAAA GCTCTCTC CTTTTTGGGG chr3L:17149967-17150087 56 2.42e-05 ACTCACTTCC GCTCTCTC ACTCTCTCTA chrX:13763270-13763390 44 2.42e-05 GGTCCCGTTA GCTCTCTC CCACCGCTCT chrX:11370308-11370428 35 2.42e-05 AGTTTACAAT GCTCTCTC GCTCTTTCGT chr2L:9272334-9272454 94 2.42e-05 CCAATGTGGC GCTCTCTC ACGCTCTCTC chr2R:12868672-12868792 19 2.42e-05 CAAGCCAAAA GCTCTCTC CCATTATTCA chr2R:12252924-12253044 58 2.42e-05 TGAGGCGctc gctctctc tttctgaatc chrX:6317740-6317860 101 3.50e-05 CCACTTTATT CCTCTCTC ACTCGCTCTC chr3R:30881141-30881261 74 3.50e-05 cttttctccg cctctctc CGAACTCACA chr3R:21581954-21582074 75 3.50e-05 AACAAATCGC CCTCTCTC CGATTTCGCT chr2R:21175174-21175294 64 3.50e-05 CATTGctcgc cctctctc tctctctctc chr3L:6997609-6997729 85 3.50e-05 tggctctttt cctctctc AATTTTTTTT chr3L:9188328-9188448 113 3.50e-05 TTCGAGTTTT CCTCTCTC chr4:388917-389037 3 4.85e-05 TC TGTCTCTC GGTCATCGCT chr2R:17802529-17802649 66 4.85e-05 tacgtgtgca tgtctctc ggagagcgtg chr2L:14230211-14230331 88 4.85e-05 ATTTTGCGTG TGTCTCTC CCCGCAAGTT chr2R:9376758-9376878 92 4.85e-05 CTTTCTCTGC TGTCTCTC TGCGCAACTG chr3R:18584667-18584787 78 4.85e-05 CATGATCGTG TGtctctc ccgcgttctc chrX:7285521-7285641 47 5.93e-05 GCGCTCTCTT TCCCTCTc acacacacag chr2L:9744737-9744857 107 5.93e-05 AATTTTCCTG TCCCTCTC TGGATG chr3L:21770553-21770673 36 5.93e-05 CATGAAAAGC TCCCTCTC TAACAAAATA chrX:8414001-8414121 88 5.93e-05 TCTTTCTTTT TCCCTCTC TTGCCTTTTT chr2L:3426044-3426164 67 5.93e-05 GTTCTCTGTC TCCCTCTC ACGCTTACAC chr3L:6552541-6552661 74 7.52e-05 CCCCGGCATT TTTCTCTC TTCATTTTGA chr3R:20741565-20741685 87 7.52e-05 TCCGGCGCAC TTTCTCTC CCGTTCAGCT chr3L:16029114-16029234 80 7.52e-05 AGCAGCATCT TTTCTCTC ATCTAAGACT chr3R:7750058-7750178 85 7.52e-05 CTCTCTTGGG TTTCTCTC GGCATCTCTC chr3L:9251757-9251877 52 8.64e-05 GCGTGTGCGC TCGCTCTC CGCAATGGAA chr2R:14139929-14140049 48 8.64e-05 TTGctcttcc tcgctctc cttctcacac chr3L:5657668-5657788 52 8.64e-05 CTTTTTTTGG tcgctctc tttttctctc chr3L:7313847-7313967 74 8.64e-05 GAAAAAGCTT TCGCTCTC GCCGTTCTCT chr3L:17148817-17148937 47 9.79e-05 GCTTTCTCTC GGTCTCTC GAAAAGAGAG chr3L:15625369-15625489 84 1.21e-04 tcccctcttt gttctctc cctctctcgt chr2R:9519428-9519548 72 1.21e-04 CTTTAGCTTT GTtctctc actctctctc chr2L:21151182-21151302 94 1.41e-04 gttcgttgta gcgctctc cgctctctcg chr2R:19231350-19231470 85 1.52e-04 TCCCAGAGCG CGTCTCTC CGTATTCTCT chr2L:4281936-4282056 76 1.52e-04 ATATTGAGGG CGTCTCTC AGCAGGATTT chr3R:24862730-24862850 54 1.75e-04 ATTATGATCA TCTCTCTG AGACCTATTT chr2L:16798892-16799012 80 1.88e-04 GGTTTTTTCT CTTCTCTC GAGAACTATC chr3R:28324974-28325094 4 1.88e-04 CAC CTTCTCTC GGAGCATCGG chr3R:11458140-11458260 74 2.13e-04 GCCCCCCAAC GCTCTCGC CGCTCGCTCT chrX:11791990-11792110 65 2.13e-04 ATAAGGCCTT GCTCTCGC TTTTTCGCTT chr2R:18406800-18406920 55 2.13e-04 CTTATCTACT GCTCTCGC TTCTCTTAAT chr3L:3747407-3747527 70 2.13e-04 GGCTGCAATT TCTCTTTC CCGCTCTCAT chr2R:18407714-18407834 72 2.13e-04 TCTTTAACGT TCTCTTTC CAAATCAAAT chr3R:14021046-14021166 18 2.24e-04 GGGCCAATTT TGCCTCTC ACTCACTTCA chr3L:625982-626102 81 2.24e-04 TAATTTCGGG TGCCTCTC TTGTGTGATA chr3L:13991471-13991591 33 2.57e-04 TCTGCCTCTC TTCCTCTC TGAGAGGAGC chr2L:19519740-19519860 90 2.69e-04 TTTTCTCTTT GCTCTCTG CTCTCAGCCC chr3L:9340269-9340389 93 3.35e-04 TCAGCGATCT GCTCTCCC TCACACACGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5665555-5665675 1.3e-05 39_[+3]_73 chr3R:11543212-11543332 1.3e-05 93_[+3]_19 chr3R:23965303-23965423 1.3e-05 71_[+3]_41 chrX:5637689-5637809 1.3e-05 46_[+3]_66 chrX:3332719-3332839 1.3e-05 83_[+3]_29 chr3R:19015532-19015652 1.3e-05 44_[+3]_68 chr2L:487013-487133 1.3e-05 81_[+3]_31 chr3R:5414298-5414418 1.3e-05 18_[+3]_94 chrX:10247494-10247614 1.3e-05 11_[+3]_101 chrX:15633486-15633606 1.3e-05 46_[+3]_66 chr3R:27426168-27426288 1.3e-05 52_[+3]_60 chrX:10620375-10620495 1.3e-05 108_[+3]_4 chrX:541811-541931 1.3e-05 42_[+3]_70 chr3R:22598332-22598452 1.3e-05 111_[+3]_1 chr3R:29458155-29458275 1.3e-05 42_[+3]_70 chr2R:25114380-25114500 1.3e-05 61_[+3]_51 chr3R:13258850-13258970 1.3e-05 33_[+3]_79 chr3L:4430438-4430558 1.3e-05 35_[+3]_77 chr2R:23796402-23796522 1.3e-05 98_[+3]_14 chr3L:1637031-1637151 1.3e-05 56_[+3]_56 chr2R:18514897-18515017 1.3e-05 62_[+3]_50 chr3L:21047873-21047993 1.3e-05 53_[+3]_59 chr2R:12054836-12054956 1.3e-05 51_[+3]_61 chrX:12431852-12431972 1.3e-05 25_[+3]_87 chr3L:3828263-3828383 1.3e-05 56_[+3]_56 chr3R:25783123-25783243 1.3e-05 66_[+3]_46 chr3R:23228459-23228579 1.3e-05 84_[+3]_28 chr2R:9389980-9390100 1.3e-05 18_[+3]_94 chr2R:14715864-14715984 1.3e-05 87_[+3]_25 chrX:2255163-2255283 1.3e-05 110_[+3]_2 chr3R:17916692-17916812 1.3e-05 50_[+3]_62 chr2L:2797520-2797640 1.3e-05 57_[+3]_55 chrX:16687525-16687645 1.3e-05 55_[+3]_57 chr3L:13904520-13904640 1.3e-05 73_[+3]_39 chr2R:9566811-9566931 1.3e-05 48_[+3]_64 chrX:8115424-8115544 2.4e-05 31_[+3]_81 chr2R:19395070-19395190 2.4e-05 76_[+3]_36 chr3L:7847798-7847918 2.4e-05 58_[+3]_54 chr2L:12288646-12288766 2.4e-05 39_[+3]_73 chr3R:21096656-21096776 2.4e-05 50_[+3]_62 chr2R:14959033-14959153 2.4e-05 83_[+3]_29 chrX:499356-499476 2.4e-05 11_[+3]_101 chrX:4694214-4694334 2.4e-05 48_[+3]_64 chr2R:11116455-11116575 2.4e-05 29_[+3]_83 chr2L:3730171-3730291 2.4e-05 48_[+3]_64 chr3L:17149967-17150087 2.4e-05 55_[+3]_57 chrX:13763270-13763390 2.4e-05 43_[+3]_69 chrX:11370308-11370428 2.4e-05 34_[+3]_78 chr2L:9272334-9272454 2.4e-05 93_[+3]_19 chr2R:12868672-12868792 2.4e-05 18_[+3]_94 chr2R:12252924-12253044 2.4e-05 57_[+3]_55 chrX:6317740-6317860 3.5e-05 100_[+3]_12 chr3R:30881141-30881261 3.5e-05 73_[+3]_39 chr3R:21581954-21582074 3.5e-05 74_[+3]_38 chr2R:21175174-21175294 3.5e-05 63_[+3]_49 chr3L:6997609-6997729 3.5e-05 84_[+3]_28 chr3L:9188328-9188448 3.5e-05 112_[+3] chr4:388917-389037 4.9e-05 2_[+3]_110 chr2R:17802529-17802649 4.9e-05 65_[+3]_47 chr2L:14230211-14230331 4.9e-05 87_[+3]_25 chr2R:9376758-9376878 4.9e-05 91_[+3]_21 chr3R:18584667-18584787 4.9e-05 77_[+3]_35 chrX:7285521-7285641 5.9e-05 46_[+3]_66 chr2L:9744737-9744857 5.9e-05 106_[+3]_6 chr3L:21770553-21770673 5.9e-05 35_[+3]_77 chrX:8414001-8414121 5.9e-05 87_[+3]_25 chr2L:3426044-3426164 5.9e-05 66_[+3]_46 chr3L:6552541-6552661 7.5e-05 73_[+3]_39 chr3R:20741565-20741685 7.5e-05 86_[+3]_26 chr3L:16029114-16029234 7.5e-05 79_[+3]_33 chr3R:7750058-7750178 7.5e-05 84_[+3]_28 chr3L:9251757-9251877 8.6e-05 51_[+3]_61 chr2R:14139929-14140049 8.6e-05 47_[+3]_65 chr3L:5657668-5657788 8.6e-05 51_[+3]_61 chr3L:7313847-7313967 8.6e-05 73_[+3]_39 chr3L:17148817-17148937 9.8e-05 46_[+3]_66 chr3L:15625369-15625489 0.00012 83_[+3]_29 chr2R:9519428-9519548 0.00012 71_[+3]_41 chr2L:21151182-21151302 0.00014 93_[+3]_19 chr2R:19231350-19231470 0.00015 84_[+3]_28 chr2L:4281936-4282056 0.00015 75_[+3]_37 chr3R:24862730-24862850 0.00017 53_[+3]_59 chr2L:16798892-16799012 0.00019 79_[+3]_33 chr3R:28324974-28325094 0.00019 3_[+3]_109 chr3R:11458140-11458260 0.00021 73_[+3]_39 chrX:11791990-11792110 0.00021 64_[+3]_48 chr2R:18406800-18406920 0.00021 54_[+3]_58 chr3L:3747407-3747527 0.00021 69_[+3]_43 chr2R:18407714-18407834 0.00021 71_[+3]_41 chr3R:14021046-14021166 0.00022 17_[+3]_95 chr3L:625982-626102 0.00022 80_[+3]_32 chr3L:13991471-13991591 0.00026 32_[+3]_80 chr2L:19519740-19519860 0.00027 89_[+3]_23 chr3L:9340269-9340389 0.00034 92_[+3]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCTCTC width=8 seqs=94 chr3L:5665555-5665675 ( 40) TCTCTCTC 1 chr3R:11543212-11543332 ( 94) TCTCTCTC 1 chr3R:23965303-23965423 ( 72) TCTCTCTC 1 chrX:5637689-5637809 ( 47) TCTCTCTC 1 chrX:3332719-3332839 ( 84) TCTCTCTC 1 chr3R:19015532-19015652 ( 45) TCTCTCTC 1 chr2L:487013-487133 ( 82) TCTCTCTC 1 chr3R:5414298-5414418 ( 19) TCTCTCTC 1 chrX:10247494-10247614 ( 12) TCTCTCTC 1 chrX:15633486-15633606 ( 47) TCTCTCTC 1 chr3R:27426168-27426288 ( 53) TCTCTCTC 1 chrX:10620375-10620495 ( 109) TCTCTCTC 1 chrX:541811-541931 ( 43) TCTCTCTC 1 chr3R:22598332-22598452 ( 112) TCTCTCTC 1 chr3R:29458155-29458275 ( 43) TCTCTCTC 1 chr2R:25114380-25114500 ( 62) TCTCTCTC 1 chr3R:13258850-13258970 ( 34) TCTCTCTC 1 chr3L:4430438-4430558 ( 36) TCTCTCTC 1 chr2R:23796402-23796522 ( 99) TCTCTCTC 1 chr3L:1637031-1637151 ( 57) TCTCTCTC 1 chr2R:18514897-18515017 ( 63) TCTCTCTC 1 chr3L:21047873-21047993 ( 54) TCTCTCTC 1 chr2R:12054836-12054956 ( 52) TCTCTCTC 1 chrX:12431852-12431972 ( 26) TCTCTCTC 1 chr3L:3828263-3828383 ( 57) TCTCTCTC 1 chr3R:25783123-25783243 ( 67) TCTCTCTC 1 chr3R:23228459-23228579 ( 85) TCTCTCTC 1 chr2R:9389980-9390100 ( 19) TCTCTCTC 1 chr2R:14715864-14715984 ( 88) TCTCTCTC 1 chrX:2255163-2255283 ( 111) TCTCTCTC 1 chr3R:17916692-17916812 ( 51) TCTCTCTC 1 chr2L:2797520-2797640 ( 58) TCTCTCTC 1 chrX:16687525-16687645 ( 56) TCTCTCTC 1 chr3L:13904520-13904640 ( 74) TCTCTCTC 1 chr2R:9566811-9566931 ( 49) TCTCTCTC 1 chrX:8115424-8115544 ( 32) GCTCTCTC 1 chr2R:19395070-19395190 ( 77) GCTCTCTC 1 chr3L:7847798-7847918 ( 59) GCTCTCTC 1 chr2L:12288646-12288766 ( 40) GCTCTCTC 1 chr3R:21096656-21096776 ( 51) GCTCTCTC 1 chr2R:14959033-14959153 ( 84) GCTCTCTC 1 chrX:499356-499476 ( 12) GCTCTCTC 1 chrX:4694214-4694334 ( 49) GCTCTCTC 1 chr2R:11116455-11116575 ( 30) GCTCTCTC 1 chr2L:3730171-3730291 ( 49) GCTCTCTC 1 chr3L:17149967-17150087 ( 56) GCTCTCTC 1 chrX:13763270-13763390 ( 44) GCTCTCTC 1 chrX:11370308-11370428 ( 35) GCTCTCTC 1 chr2L:9272334-9272454 ( 94) GCTCTCTC 1 chr2R:12868672-12868792 ( 19) GCTCTCTC 1 chr2R:12252924-12253044 ( 58) GCTCTCTC 1 chrX:6317740-6317860 ( 101) CCTCTCTC 1 chr3R:30881141-30881261 ( 74) CCTCTCTC 1 chr3R:21581954-21582074 ( 75) CCTCTCTC 1 chr2R:21175174-21175294 ( 64) CCTCTCTC 1 chr3L:6997609-6997729 ( 85) CCTCTCTC 1 chr3L:9188328-9188448 ( 113) CCTCTCTC 1 chr4:388917-389037 ( 3) TGTCTCTC 1 chr2R:17802529-17802649 ( 66) TGTCTCTC 1 chr2L:14230211-14230331 ( 88) TGTCTCTC 1 chr2R:9376758-9376878 ( 92) TGTCTCTC 1 chr3R:18584667-18584787 ( 78) TGTCTCTC 1 chrX:7285521-7285641 ( 47) TCCCTCTC 1 chr2L:9744737-9744857 ( 107) TCCCTCTC 1 chr3L:21770553-21770673 ( 36) TCCCTCTC 1 chrX:8414001-8414121 ( 88) TCCCTCTC 1 chr2L:3426044-3426164 ( 67) TCCCTCTC 1 chr3L:6552541-6552661 ( 74) TTTCTCTC 1 chr3R:20741565-20741685 ( 87) TTTCTCTC 1 chr3L:16029114-16029234 ( 80) TTTCTCTC 1 chr3R:7750058-7750178 ( 85) TTTCTCTC 1 chr3L:9251757-9251877 ( 52) TCGCTCTC 1 chr2R:14139929-14140049 ( 48) TCGCTCTC 1 chr3L:5657668-5657788 ( 52) TCGCTCTC 1 chr3L:7313847-7313967 ( 74) TCGCTCTC 1 chr3L:17148817-17148937 ( 47) GGTCTCTC 1 chr3L:15625369-15625489 ( 84) GTTCTCTC 1 chr2R:9519428-9519548 ( 72) GTTCTCTC 1 chr2L:21151182-21151302 ( 94) GCGCTCTC 1 chr2R:19231350-19231470 ( 85) CGTCTCTC 1 chr2L:4281936-4282056 ( 76) CGTCTCTC 1 chr3R:24862730-24862850 ( 54) TCTCTCTG 1 chr2L:16798892-16799012 ( 80) CTTCTCTC 1 chr3R:28324974-28325094 ( 4) CTTCTCTC 1 chr3R:11458140-11458260 ( 74) GCTCTCGC 1 chrX:11791990-11792110 ( 65) GCTCTCGC 1 chr2R:18406800-18406920 ( 55) GCTCTCGC 1 chr3L:3747407-3747527 ( 70) TCTCTTTC 1 chr2R:18407714-18407834 ( 72) TCTCTTTC 1 chr3R:14021046-14021166 ( 18) TGCCTCTC 1 chr3L:625982-626102 ( 81) TGCCTCTC 1 chr3L:13991471-13991591 ( 33) TTCCTCTC 1 chr2L:19519740-19519860 ( 90) GCTCTCTG 1 chr3L:9340269-9340389 ( 93) GCTCTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4344 E= 3.2e-079 -1320 -106 21 121 -1320 185 -111 -150 -1320 -138 -211 167 -1320 217 -1320 -1320 -1320 -1320 -1320 188 -1320 214 -1320 -367 -1320 -438 -285 182 -1320 214 -343 -1320 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 94 E= 3.2e-079 0.000000 0.106383 0.265957 0.627660 0.000000 0.797872 0.106383 0.095745 0.000000 0.085106 0.053191 0.861702 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.978723 0.000000 0.021277 0.000000 0.010638 0.031915 0.957447 0.000000 0.978723 0.021277 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-3 regular expression -------------------------------------------------------------------------------- [TG]CTCTCTC -------------------------------------------------------------------------------- Time 19.62 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGAGAGA MEME-4 width = 8 sites = 86 llr = 740 E-value = 3.5e-058 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a1a:8:6 pos.-specific C 1::::1:2 probability G 9:9:a:a1 matrix T :::::::2 bits 2.2 * 2.0 ** * 1.7 ***** * 1.5 ***** * Relative 1.3 ***** * Entropy 1.1 ******* (12.4 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel GAGAGAGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13191576-13191696 16 1.65e-05 gagagagcag gagagaga tagagagaaa chr3L:1883323-1883443 93 1.65e-05 tgagtgcgca gagagaga AAATCGTTTT chr3L:13993518-13993638 58 1.65e-05 agagagagcc gagagaga gTCGTTGTGA chrX:11372873-11372993 35 1.65e-05 GTCGAagaga gagagaga gagtgagaga chrX:20411784-20411904 32 1.65e-05 gcgagagaga gagagaga cggcaagcga chr3R:24667961-24668081 36 1.65e-05 GCCGgagagc gagagaga tggccggaga chr3R:24092727-24092847 35 1.65e-05 CGGCCGACGT GAGAGAGA ATGGTCCGCA chrX:16562443-16562563 15 1.65e-05 ttcacagtgc gagagaga cggagagaga chr3R:4797721-4797841 55 1.65e-05 Aagagagaga gagagaga gagagagaga chr3L:6717121-6717241 20 1.65e-05 TTTCCACaga gagagaga gagagagaga chr2R:6828219-6828339 54 1.65e-05 gagagagaca gagagaga gagagagagc chrX:7629334-7629454 42 1.65e-05 gagccaaaag gagagaga gcgagagaga chr2L:3766120-3766240 14 1.65e-05 ATgagaaata gagagaga aagagagaga chrX:5364194-5364314 90 1.65e-05 gcagatggaa gagagaga aagGCGAGGC chr2R:15425054-15425174 70 1.65e-05 gagagagaga gagagaga gagCGCGCGC chr2L:1663247-1663367 73 1.65e-05 gcgagagaga gagagaga gagagagTGG chrX:3292848-3292968 73 1.65e-05 gagtgagaga gagagaga gGGGAAGATT chr2R:12271601-12271721 60 1.65e-05 CTgagcgaga gagagaga gtgtgagaga chr3R:17069497-17069617 21 1.65e-05 CATTAagaga gagagaga gcaaagagag chr2R:21843189-21843309 38 1.65e-05 gagagagaga gagagaga gagagCGAGG chr3R:24260579-24260699 61 1.65e-05 Cagagaatca gagagaga gagagagaga chr2R:9376758-9376878 47 1.65e-05 GACagagaga gagagaga gagagagaga chr3R:9460763-9460883 38 1.65e-05 caaaaagagt gagagaga agagagCGTA chr3R:9359515-9359635 59 1.65e-05 tagagagaga gagagaga gcggagaAGC chrX:17963460-17963580 19 1.65e-05 TCATTGTAAG gagagaga gagagagagg chr3R:9979486-9979606 85 1.65e-05 gagagagaga gagagaga gagagagaga chr3R:20204610-20204730 24 1.65e-05 TTCGATTGAa gagagaga gagagagaga chr3L:17148817-17148937 74 1.65e-05 GAGCAAAAGC GAGAGAGA ACTTGGCGCT chr3L:9190299-9190419 94 1.65e-05 CAACGAGAGC GAGAGAGA AAGCCATGGA chr2R:24712821-24712941 50 1.65e-05 cagaaagaaa gagagaga gagagagaga chr3L:19432364-19432484 55 1.65e-05 AGgagagagg gagagaga ttgagaaaaa chr3R:10035314-10035434 56 1.65e-05 gagagagaga gagagaga gGGTGGGATA chrX:9588679-9588799 44 1.65e-05 ggaagagagc gagagaga gcgagcgaga chr3R:14986264-14986384 71 1.65e-05 gagagagaga gagagaga aagaaagtcg chrX:3190961-3191081 76 1.65e-05 gagagaaaga gagagaga TTTAACTGAC chrX:19260063-19260183 50 2.97e-05 agagagaaag gagagagc atgacgagcg chr3L:2427328-2427448 69 2.97e-05 gagcgagagc gagagagc agaggagaga chr3L:11197032-11197152 13 2.97e-05 GCgacagaaa gagagagc gccacagcga chr3L:16029114-16029234 34 2.97e-05 TGGGTCGCGT GAGAGAGC CGTGAGTGAT chr3R:13240565-13240685 49 2.97e-05 ggtgagcggt gagagagc aggagccagg chr3L:12892528-12892648 46 2.97e-05 CAAAACgaaa gagagagc gagagagaga chr2R:19411395-19411515 12 4.58e-05 TGGCAAACAA GAGAGAGT GGAAAACGAA chr3L:10722782-10722902 32 4.58e-05 gagagagagc gagagagt gagagggaga chr2L:16720298-16720418 15 4.58e-05 AAAAGCCCCG GAGAGAGT CGATTACATG chrX:17291761-17291881 8 4.58e-05 AGTAAAT GAGAGAGT AAAAGAGGGG chrX:19690190-19690310 32 4.58e-05 CGGTGTCGGT GAGAGAGT GTGATGTTTC chr2R:11232005-11232125 53 4.58e-05 actgacagct gagagagT GTTAAAAGTT chr3R:27157675-27157795 9 4.58e-05 GAGCTTTC GAGAGAGT TTCAAGATTG chr2L:11879058-11879178 31 4.58e-05 TGCTTATAGT GAGAGAGT AGTAAAGAGA chr3L:2896513-2896633 11 4.58e-05 AAACCAGCGG GAGAGAGT AAAGTCCCAA chr3L:9188328-9188448 49 4.58e-05 gagagagcgg gagagagT CCTGTTGGCA chr3R:29760146-29760266 80 5.95e-05 gagagaaggt gagagagg agTTACACTA chr3R:27987907-27988027 51 5.95e-05 aagtcgcagt gagagagg caaagagCGC chr3R:6407654-6407774 82 5.95e-05 AAAGCGCAAA GAGAGAGG GAGAAGAAGC chrX:6860723-6860843 50 5.95e-05 AAAGGAGAAT GAGAGAGG TCGTAGGGGT chrX:2743743-2743863 68 5.95e-05 gagagagaga gagagagg gacagtcaga chr2R:20943500-20943620 50 7.27e-05 GAGAGAGAGA GAGAGCGA CTCGCTGAGA chr3R:20739988-20740108 29 7.27e-05 CCAAACCGAA GAGAGCGA GGGAAAGCGT chr3L:8285455-8285575 74 8.86e-05 ATGAGCGGAG CAGAGAGA AGGCCAAAAA chr2L:21221919-21222039 50 8.86e-05 CTTGGCTCGT CAGAGAGA AAGAGATTGC chr2L:21618055-21618175 108 1.08e-04 ACTTgaaaga gaaagaga atcac chrX:10245351-10245471 18 1.08e-04 GACCAagaga gaaagaga gagagagaga chr2L:13113702-13113822 34 1.08e-04 CAATTGCAGC GAAAGAGA GGTGTCTACC chr3L:7313019-7313139 61 1.19e-04 TGGTGTGCGT GAGAGCGC GAGAGCCGCA chr3R:19731013-19731133 51 1.19e-04 gagagagagc gagagcgc gcgcgtgtgt chrX:6757321-6757441 75 1.19e-04 cgagagagcg gagagcgc tacagcaaac chrX:1514214-1514334 97 1.19e-04 tgagagagct gagagcgc tacagcgaac chr2R:13620361-13620481 91 1.48e-04 GCACTGCGCA GAGAGTGA AAAGTGCCGG chr2L:15332709-15332829 57 1.48e-04 TCGAAACAGT GAGAGTGA AGAGAAGCAA chr3R:28324974-28325094 47 1.85e-04 CGGAGTGCCA GAGAGCGG GAGACACGTG chr2L:4281936-4282056 37 1.85e-04 TGGTGATTCT CAGAGAGC AAAAGAGAGA chr3L:21193674-21193794 102 1.85e-04 TTCCAAATGG GCGAGAGA TTGCCAATTC chr3L:13902054-13902174 109 1.85e-04 CTCCCACGCT CAGAGAGC TAGG chr3R:21060074-21060194 58 1.85e-04 CGGTTAGAGG GAGAGCGG ACGGAGAGAG chr2L:13332036-13332156 85 2.20e-04 GCTCTCCGCT CAGAGAGT TGATGTAACC chr3L:15090425-15090545 78 2.20e-04 ACCAGATCGC GAGAGAAA CAAAGAGAAA chr3R:25783123-25783243 86 2.20e-04 ctctctctct GAGAGAAA AAGAAATTCT chr3R:24485121-24485241 68 2.20e-04 AGCACATCTT CAGAGAGT CCGGCGAGCA chr2L:17621334-17621454 1 2.36e-04 . GAAAGAGC TGGGAGAACT chr3L:2169182-2169302 10 2.56e-04 ACGCCGATA GAAAGAGT AGCTGTTTTT chr2R:12045059-12045179 76 2.69e-04 CTCAAGCTAA GAGAGTGC CGAAAGCTCA chr3R:23239166-23239286 38 2.98e-04 agtgagagtg gagagtgt gagtgagTGG chr3R:9866394-9866514 96 3.10e-04 GTACATCTTG CAGAGCGA TTGCAAATGA chr3L:3763313-3763433 34 3.27e-04 GGGAGAGCAA GAAAGAGG AGAACGAGAG chr2R:17802529-17802649 35 3.95e-04 tgtgttgagt gcgagagt atctgtgtgt chr2L:20829481-20829601 34 5.26e-04 TTCAAGAGAT GAGAGCAA ATTAAAATGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13191576-13191696 1.6e-05 15_[+4]_97 chr3L:1883323-1883443 1.6e-05 92_[+4]_20 chr3L:13993518-13993638 1.6e-05 57_[+4]_55 chrX:11372873-11372993 1.6e-05 34_[+4]_78 chrX:20411784-20411904 1.6e-05 31_[+4]_81 chr3R:24667961-24668081 1.6e-05 35_[+4]_77 chr3R:24092727-24092847 1.6e-05 34_[+4]_78 chrX:16562443-16562563 1.6e-05 14_[+4]_98 chr3R:4797721-4797841 1.6e-05 54_[+4]_58 chr3L:6717121-6717241 1.6e-05 19_[+4]_93 chr2R:6828219-6828339 1.6e-05 53_[+4]_59 chrX:7629334-7629454 1.6e-05 41_[+4]_71 chr2L:3766120-3766240 1.6e-05 13_[+4]_99 chrX:5364194-5364314 1.6e-05 89_[+4]_23 chr2R:15425054-15425174 1.6e-05 69_[+4]_43 chr2L:1663247-1663367 1.6e-05 72_[+4]_40 chrX:3292848-3292968 1.6e-05 72_[+4]_40 chr2R:12271601-12271721 1.6e-05 59_[+4]_53 chr3R:17069497-17069617 1.6e-05 20_[+4]_92 chr2R:21843189-21843309 1.6e-05 37_[+4]_75 chr3R:24260579-24260699 1.6e-05 60_[+4]_52 chr2R:9376758-9376878 1.6e-05 46_[+4]_66 chr3R:9460763-9460883 1.6e-05 37_[+4]_75 chr3R:9359515-9359635 1.6e-05 58_[+4]_54 chrX:17963460-17963580 1.6e-05 18_[+4]_94 chr3R:9979486-9979606 1.6e-05 84_[+4]_28 chr3R:20204610-20204730 1.6e-05 23_[+4]_89 chr3L:17148817-17148937 1.6e-05 73_[+4]_39 chr3L:9190299-9190419 1.6e-05 93_[+4]_19 chr2R:24712821-24712941 1.6e-05 49_[+4]_63 chr3L:19432364-19432484 1.6e-05 54_[+4]_58 chr3R:10035314-10035434 1.6e-05 55_[+4]_57 chrX:9588679-9588799 1.6e-05 43_[+4]_69 chr3R:14986264-14986384 1.6e-05 70_[+4]_42 chrX:3190961-3191081 1.6e-05 75_[+4]_37 chrX:19260063-19260183 3e-05 49_[+4]_63 chr3L:2427328-2427448 3e-05 68_[+4]_44 chr3L:11197032-11197152 3e-05 12_[+4]_100 chr3L:16029114-16029234 3e-05 33_[+4]_79 chr3R:13240565-13240685 3e-05 48_[+4]_64 chr3L:12892528-12892648 3e-05 45_[+4]_67 chr2R:19411395-19411515 4.6e-05 11_[+4]_101 chr3L:10722782-10722902 4.6e-05 31_[+4]_81 chr2L:16720298-16720418 4.6e-05 14_[+4]_98 chrX:17291761-17291881 4.6e-05 7_[+4]_105 chrX:19690190-19690310 4.6e-05 31_[+4]_81 chr2R:11232005-11232125 4.6e-05 52_[+4]_60 chr3R:27157675-27157795 4.6e-05 8_[+4]_104 chr2L:11879058-11879178 4.6e-05 30_[+4]_82 chr3L:2896513-2896633 4.6e-05 10_[+4]_102 chr3L:9188328-9188448 4.6e-05 48_[+4]_64 chr3R:29760146-29760266 5.9e-05 79_[+4]_33 chr3R:27987907-27988027 5.9e-05 50_[+4]_62 chr3R:6407654-6407774 5.9e-05 81_[+4]_31 chrX:6860723-6860843 5.9e-05 49_[+4]_63 chrX:2743743-2743863 5.9e-05 67_[+4]_45 chr2R:20943500-20943620 7.3e-05 49_[+4]_63 chr3R:20739988-20740108 7.3e-05 28_[+4]_84 chr3L:8285455-8285575 8.9e-05 73_[+4]_39 chr2L:21221919-21222039 8.9e-05 49_[+4]_63 chr2L:21618055-21618175 0.00011 107_[+4]_5 chrX:10245351-10245471 0.00011 17_[+4]_95 chr2L:13113702-13113822 0.00011 33_[+4]_79 chr3L:7313019-7313139 0.00012 60_[+4]_52 chr3R:19731013-19731133 0.00012 50_[+4]_62 chrX:6757321-6757441 0.00012 74_[+4]_38 chrX:1514214-1514334 0.00012 96_[+4]_16 chr2R:13620361-13620481 0.00015 90_[+4]_22 chr2L:15332709-15332829 0.00015 56_[+4]_56 chr3R:28324974-28325094 0.00018 46_[+4]_66 chr2L:4281936-4282056 0.00018 36_[+4]_76 chr3L:21193674-21193794 0.00018 101_[+4]_11 chr3L:13902054-13902174 0.00018 108_[+4]_4 chr3R:21060074-21060194 0.00018 57_[+4]_55 chr2L:13332036-13332156 0.00022 84_[+4]_28 chr3L:15090425-15090545 0.00022 77_[+4]_35 chr3R:25783123-25783243 0.00022 85_[+4]_27 chr3R:24485121-24485241 0.00022 67_[+4]_45 chr2L:17621334-17621454 0.00024 [+4]_112 chr3L:2169182-2169302 0.00026 9_[+4]_103 chr2R:12045059-12045179 0.00027 75_[+4]_37 chr3R:23239166-23239286 0.0003 37_[+4]_75 chr3R:9866394-9866514 0.00031 95_[+4]_17 chr3L:3763313-3763433 0.00033 33_[+4]_79 chr2R:17802529-17802649 0.0004 34_[+4]_78 chr2L:20829481-20829601 0.00053 33_[+4]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAGAGA width=8 seqs=86 chr2R:13191576-13191696 ( 16) GAGAGAGA 1 chr3L:1883323-1883443 ( 93) GAGAGAGA 1 chr3L:13993518-13993638 ( 58) GAGAGAGA 1 chrX:11372873-11372993 ( 35) GAGAGAGA 1 chrX:20411784-20411904 ( 32) GAGAGAGA 1 chr3R:24667961-24668081 ( 36) GAGAGAGA 1 chr3R:24092727-24092847 ( 35) GAGAGAGA 1 chrX:16562443-16562563 ( 15) GAGAGAGA 1 chr3R:4797721-4797841 ( 55) GAGAGAGA 1 chr3L:6717121-6717241 ( 20) GAGAGAGA 1 chr2R:6828219-6828339 ( 54) GAGAGAGA 1 chrX:7629334-7629454 ( 42) GAGAGAGA 1 chr2L:3766120-3766240 ( 14) GAGAGAGA 1 chrX:5364194-5364314 ( 90) GAGAGAGA 1 chr2R:15425054-15425174 ( 70) GAGAGAGA 1 chr2L:1663247-1663367 ( 73) GAGAGAGA 1 chrX:3292848-3292968 ( 73) GAGAGAGA 1 chr2R:12271601-12271721 ( 60) GAGAGAGA 1 chr3R:17069497-17069617 ( 21) GAGAGAGA 1 chr2R:21843189-21843309 ( 38) GAGAGAGA 1 chr3R:24260579-24260699 ( 61) GAGAGAGA 1 chr2R:9376758-9376878 ( 47) GAGAGAGA 1 chr3R:9460763-9460883 ( 38) GAGAGAGA 1 chr3R:9359515-9359635 ( 59) GAGAGAGA 1 chrX:17963460-17963580 ( 19) GAGAGAGA 1 chr3R:9979486-9979606 ( 85) GAGAGAGA 1 chr3R:20204610-20204730 ( 24) GAGAGAGA 1 chr3L:17148817-17148937 ( 74) GAGAGAGA 1 chr3L:9190299-9190419 ( 94) GAGAGAGA 1 chr2R:24712821-24712941 ( 50) GAGAGAGA 1 chr3L:19432364-19432484 ( 55) GAGAGAGA 1 chr3R:10035314-10035434 ( 56) GAGAGAGA 1 chrX:9588679-9588799 ( 44) GAGAGAGA 1 chr3R:14986264-14986384 ( 71) GAGAGAGA 1 chrX:3190961-3191081 ( 76) GAGAGAGA 1 chrX:19260063-19260183 ( 50) GAGAGAGC 1 chr3L:2427328-2427448 ( 69) GAGAGAGC 1 chr3L:11197032-11197152 ( 13) GAGAGAGC 1 chr3L:16029114-16029234 ( 34) GAGAGAGC 1 chr3R:13240565-13240685 ( 49) GAGAGAGC 1 chr3L:12892528-12892648 ( 46) GAGAGAGC 1 chr2R:19411395-19411515 ( 12) GAGAGAGT 1 chr3L:10722782-10722902 ( 32) GAGAGAGT 1 chr2L:16720298-16720418 ( 15) GAGAGAGT 1 chrX:17291761-17291881 ( 8) GAGAGAGT 1 chrX:19690190-19690310 ( 32) GAGAGAGT 1 chr2R:11232005-11232125 ( 53) GAGAGAGT 1 chr3R:27157675-27157795 ( 9) GAGAGAGT 1 chr2L:11879058-11879178 ( 31) GAGAGAGT 1 chr3L:2896513-2896633 ( 11) GAGAGAGT 1 chr3L:9188328-9188448 ( 49) GAGAGAGT 1 chr3R:29760146-29760266 ( 80) GAGAGAGG 1 chr3R:27987907-27988027 ( 51) GAGAGAGG 1 chr3R:6407654-6407774 ( 82) GAGAGAGG 1 chrX:6860723-6860843 ( 50) GAGAGAGG 1 chrX:2743743-2743863 ( 68) GAGAGAGG 1 chr2R:20943500-20943620 ( 50) GAGAGCGA 1 chr3R:20739988-20740108 ( 29) GAGAGCGA 1 chr3L:8285455-8285575 ( 74) CAGAGAGA 1 chr2L:21221919-21222039 ( 50) CAGAGAGA 1 chr2L:21618055-21618175 ( 108) GAAAGAGA 1 chrX:10245351-10245471 ( 18) GAAAGAGA 1 chr2L:13113702-13113822 ( 34) GAAAGAGA 1 chr3L:7313019-7313139 ( 61) GAGAGCGC 1 chr3R:19731013-19731133 ( 51) GAGAGCGC 1 chrX:6757321-6757441 ( 75) GAGAGCGC 1 chrX:1514214-1514334 ( 97) GAGAGCGC 1 chr2R:13620361-13620481 ( 91) GAGAGTGA 1 chr2L:15332709-15332829 ( 57) GAGAGTGA 1 chr3R:28324974-28325094 ( 47) GAGAGCGG 1 chr2L:4281936-4282056 ( 37) CAGAGAGC 1 chr3L:21193674-21193794 ( 102) GCGAGAGA 1 chr3L:13902054-13902174 ( 109) CAGAGAGC 1 chr3R:21060074-21060194 ( 58) GAGAGCGG 1 chr2L:13332036-13332156 ( 85) CAGAGAGT 1 chr3L:15090425-15090545 ( 78) GAGAGAAA 1 chr3R:25783123-25783243 ( 86) GAGAGAAA 1 chr3R:24485121-24485241 ( 68) CAGAGAGT 1 chr2L:17621334-17621454 ( 1) GAAAGAGC 1 chr3L:2169182-2169302 ( 10) GAAAGAGT 1 chr2R:12045059-12045179 ( 76) GAGAGTGC 1 chr3R:23239166-23239286 ( 38) GAGAGTGT 1 chr3R:9866394-9866514 ( 96) CAGAGCGA 1 chr3L:3763313-3763433 ( 34) GAAAGAGG 1 chr2R:17802529-17802649 ( 35) GCGAGAGT 1 chr2L:20829481-20829601 ( 34) GAGAGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.87754 E= 3.5e-058 -1307 -145 200 -1307 182 -325 -1307 -1307 -199 -1307 202 -1307 185 -1307 -1307 -1307 -1307 -1307 212 -1307 160 -93 -1307 -254 -299 -1307 207 -1307 104 -45 -131 -64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 86 E= 3.5e-058 0.000000 0.081395 0.918605 0.000000 0.976744 0.023256 0.000000 0.000000 0.069767 0.000000 0.930233 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.837209 0.116279 0.000000 0.046512 0.034884 0.000000 0.965116 0.000000 0.569767 0.162791 0.093023 0.174419 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-4 regular expression -------------------------------------------------------------------------------- GAGAGAGA -------------------------------------------------------------------------------- Time 25.29 secs. ******************************************************************************** ******************************************************************************** MOTIF TYTCTCTY MEME-5 width = 8 sites = 75 llr = 615 E-value = 3.1e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYTCTCTY MEME-5 Description -------------------------------------------------------------------------------- Simplified A 2::::::: pos.-specific C :4:a:a:5 probability G 2:3::::: matrix T 667:a:a5 bits 2.2 * * 2.0 **** 1.7 **** 1.5 **** Relative 1.3 **** Entropy 1.1 ******* (11.8 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCTCTC consensus ACG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTY MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23965303-23965423 111 1.60e-05 tctttctagc tttctctc tc chr3L:7847798-7847918 91 1.60e-05 TGTGAGTAAG TTTCTCTC CATTTTTCCA chr2L:12288646-12288766 64 1.60e-05 tctcttgctc tttctctc tgtctgtgtg chr2L:487013-487133 38 1.60e-05 TGTCACTAGT TTtctctc cctctctctc chrX:8414001-8414121 52 1.60e-05 TTCAATGCTG TTTCTCTC TGCTCTCGAC chr3R:22598332-22598452 23 1.60e-05 Actcactctc tttctctc tgtcccctct chr3R:13258850-13258970 24 1.60e-05 cactctctct tttctctc cctctctctc chrX:4694214-4694334 40 1.60e-05 TTActcttcc tttctctc cgctctctcg chr3L:21047873-21047993 40 1.60e-05 AACTCTACAT TTTCTCTC ATtctctctc chr3L:6997609-6997729 67 1.60e-05 tctctctctc tttctctc tggctctttt chrX:10247494-10247614 90 2.91e-05 tctctctctc tctctctc tttctcGTTT chr3R:27426168-27426288 61 2.91e-05 tctctctctc tctctctc tctgtctctc chrX:10620375-10620495 97 2.91e-05 tctcggccgc tctctctc cccttctctc chr3L:4430438-4430558 28 2.91e-05 GCTTTAGcta tctctctc tctctctctc chr2R:18514897-18515017 43 2.91e-05 TTCCTGTCCT tctctctc gctctctcta chr3R:25783123-25783243 55 2.91e-05 tctctaactc tctctctc tctctctctc chr2R:9389980-9390100 33 2.91e-05 tctcgatcat tctctctc ttcgcactct chrX:2255163-2255283 101 2.91e-05 tctctctctc tctctctc tctctctctc chrX:16687525-16687645 64 2.91e-05 tctctctctc tctctctc tGTTGCTTGC chr2L:19519740-19519860 81 4.86e-05 CGCGAAAGCT TTTCTCTT TGCTCTCTGC chr2L:9744737-9744857 32 4.86e-05 TTGGTCAACT TTTCTCTT TGCCATTTTC chr3L:1275730-1275850 46 4.86e-05 CTCTTCACCT TTTCTCTT GCGGATAAAT chr3L:6552541-6552661 1 4.86e-05 . TTTCTCTT TCGTTCACTT chr2R:14959033-14959153 42 4.86e-05 TGGCAATACC TTTCTCTT TGGCTCAGCT chr3R:18931838-18931958 68 4.86e-05 aaaccacaca TTTCTCTT TTGTCTCTTC chr3L:3747407-3747527 25 4.86e-05 GCTATGCCAT TTTCTCTT GGCCAAGAAA chr2L:3730171-3730291 80 4.86e-05 TCTCTCTCAG TTTCTCTT TGGGGGCATC chr3L:3828263-3828383 76 4.86e-05 CGTGCGCGTT TTTCTCTT TTGGGGAAAA chr3R:23228459-23228579 45 4.86e-05 TTATTTTGTG TTtctctt tctccctccc chr2R:9519428-9519548 94 4.86e-05 tctctccctc tttctctt tgtatccacc chr2L:3426044-3426164 19 4.86e-05 TCTCTTTCTC TTTCTCTT TGGGTTTATT chr3L:5664699-5664819 105 4.86e-05 TCTTGCCCGC TTTCTCTT CTCGCCAC chr2L:13113702-13113822 70 4.86e-05 TATCTCTGAG TTTCTCTT GAACTTGAAA chr3R:11543212-11543332 76 6.46e-05 TCCGTCGCAG tctctctt tctccctcgc chr3R:30881141-30881261 45 7.82e-05 GGGAGAGCTT TTGctctc tctctctctc chrX:11370308-11370428 63 7.82e-05 CCTCTCTCTT TTGCTCTC CCTCGCCGTC chr2L:9272334-9272454 63 9.18e-05 TATAGCAAGG GTTCTCTC CTCACAAATG chrX:3332719-3332839 48 1.19e-04 TAACCTActc tcgctctc tccctctctc chrX:6317740-6317860 111 1.19e-04 CCTCTCTCAC TCGCTCTC TG chrX:15633486-15633606 13 1.19e-04 ACATAGCGGT tcgctctc tcactcgatc chr3L:9251757-9251877 7 1.19e-04 AGGCGG ATTCTCTC GCATTTTCGC chr2R:19231350-19231470 106 1.19e-04 ATTCTCTCGG ATTCTCTC GTCGGAA chr2R:14715864-14715984 16 1.19e-04 ACAATGGGAA ATTCTCTC CACTGCACAG chr3R:17916692-17916812 21 1.19e-04 TATCACTCGG ATTCTCTC ATGAAAAGGG chr3R:19503445-19503565 15 1.47e-04 TTTGTTTATT TTGCTCTT TGAAGTATTT chr3R:5414298-5414418 47 1.47e-04 GACTCGTTCC TTGCTCTT TGCAGAGATT chr2R:14139929-14140049 38 1.47e-04 TATATCGGGA TTGctctt cctcgctctc chr3R:28654698-28654818 18 1.47e-04 ATCGTAGGAA TTGCTCTT AGGTGTTGAT chr3L:11428542-11428662 88 1.47e-04 TTCCACTCAA TTGCTCTT AAATTGGCGT chr3L:13904520-13904640 39 1.47e-04 TTGCAGAAAA GCTCTCTC CTTGACAGAG chr2R:9566811-9566931 41 1.47e-04 TCGTCGCCGA Gctctctc tctctctctc chr3R:31822742-31822862 71 1.77e-04 TTCTACCCCA GTTCTCTT TTCCCGAATT chr3R:24457619-24457739 27 1.77e-04 AAAATAAATG GTTCTCTT AGCCTTTCAC chr3R:29458155-29458275 61 1.77e-04 tcgccgagga actctctc tctctctctc chr2R:23796402-23796522 109 1.77e-04 tctctctcgc actctctc gctc chr2R:11116455-11116575 64 1.77e-04 TCTTTCCCAC ACTCTCTC GGCCATTTTG chrX:12431852-12431972 12 1.77e-04 TTCGACTGCG Actctctc gatctctctc chr3R:18584667-18584787 90 1.77e-04 tctctcccgc gttctctt ctctctctct chr3L:9340269-9340389 62 2.10e-04 TCTCCCCATC ATTCTCTT TGTTTTTTTT chr3L:2171005-2171125 21 2.10e-04 AGATCTTGCT ATTCTCTT AATTAACTCT chr3L:1637031-1637151 85 2.10e-04 tctctctctg tcgctctT CCGCCAGAGC chrX:3190961-3191081 105 2.10e-04 AATGAGCTGC ATTCTCTT AGAGTATT chr2L:2797520-2797640 93 2.24e-04 ttctgtttct gctctctT TACTGCGCAC chr2L:5147675-5147795 54 2.40e-04 CGCTCTTCGG ACTCTCTT AAAACGACTC chr3R:12080731-12080851 85 2.40e-04 GCTCTCTCTT ACTCTCTT TTCATTCAAA chr3R:21581954-21582074 112 2.52e-04 ACACGTTTGT GTGCTCTC A chrX:5637689-5637809 110 2.66e-04 AGCTCGCAGG ATGCTCTC GAT chrX:8115424-8115544 94 2.75e-04 CGCTGTTTTT GCGCTCTC ACTATTTCCT chr2R:25114380-25114500 42 2.75e-04 ATGCCTACTT GCGctctc cctctctctc chr2R:12252924-12253044 4 2.75e-04 AGG GCGCTCTC CCGTTACTCC chr2L:15332709-15332829 95 3.17e-04 GAGAATGCTT ATGCTCTT TTTCGTACTG chr2L:17621334-17621454 78 3.17e-04 CTAACAGAGC ATGCTCTT TGGGAATTTT chr3L:7313847-7313967 102 3.29e-04 CTTTTGTCGC GCGCTCTT CAACATGTTG chr3R:12467787-12467907 44 3.29e-04 TTATACTGCT GCGCTCTT TTCGCGAACA chr3R:7974216-7974336 28 3.29e-04 gttcgctgta gcgctctt cgctctctcg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTY MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23965303-23965423 1.6e-05 110_[+5]_2 chr3L:7847798-7847918 1.6e-05 90_[+5]_22 chr2L:12288646-12288766 1.6e-05 63_[+5]_49 chr2L:487013-487133 1.6e-05 37_[+5]_75 chrX:8414001-8414121 1.6e-05 51_[+5]_61 chr3R:22598332-22598452 1.6e-05 22_[+5]_90 chr3R:13258850-13258970 1.6e-05 23_[+5]_89 chrX:4694214-4694334 1.6e-05 39_[+5]_73 chr3L:21047873-21047993 1.6e-05 39_[+5]_73 chr3L:6997609-6997729 1.6e-05 66_[+5]_46 chrX:10247494-10247614 2.9e-05 89_[+5]_23 chr3R:27426168-27426288 2.9e-05 60_[+5]_52 chrX:10620375-10620495 2.9e-05 96_[+5]_16 chr3L:4430438-4430558 2.9e-05 27_[+5]_85 chr2R:18514897-18515017 2.9e-05 42_[+5]_70 chr3R:25783123-25783243 2.9e-05 54_[+5]_58 chr2R:9389980-9390100 2.9e-05 32_[+5]_80 chrX:2255163-2255283 2.9e-05 100_[+5]_12 chrX:16687525-16687645 2.9e-05 63_[+5]_49 chr2L:19519740-19519860 4.9e-05 80_[+5]_32 chr2L:9744737-9744857 4.9e-05 31_[+5]_81 chr3L:1275730-1275850 4.9e-05 45_[+5]_67 chr3L:6552541-6552661 4.9e-05 [+5]_112 chr2R:14959033-14959153 4.9e-05 41_[+5]_71 chr3R:18931838-18931958 4.9e-05 67_[+5]_45 chr3L:3747407-3747527 4.9e-05 24_[+5]_88 chr2L:3730171-3730291 4.9e-05 79_[+5]_33 chr3L:3828263-3828383 4.9e-05 75_[+5]_37 chr3R:23228459-23228579 4.9e-05 44_[+5]_68 chr2R:9519428-9519548 4.9e-05 93_[+5]_19 chr2L:3426044-3426164 4.9e-05 18_[+5]_94 chr3L:5664699-5664819 4.9e-05 104_[+5]_8 chr2L:13113702-13113822 4.9e-05 69_[+5]_43 chr3R:11543212-11543332 6.5e-05 75_[+5]_37 chr3R:30881141-30881261 7.8e-05 44_[+5]_68 chrX:11370308-11370428 7.8e-05 62_[+5]_50 chr2L:9272334-9272454 9.2e-05 62_[+5]_50 chrX:3332719-3332839 0.00012 47_[+5]_65 chrX:6317740-6317860 0.00012 110_[+5]_2 chrX:15633486-15633606 0.00012 12_[+5]_100 chr3L:9251757-9251877 0.00012 6_[+5]_106 chr2R:19231350-19231470 0.00012 105_[+5]_7 chr2R:14715864-14715984 0.00012 15_[+5]_97 chr3R:17916692-17916812 0.00012 20_[+5]_92 chr3R:19503445-19503565 0.00015 14_[+5]_98 chr3R:5414298-5414418 0.00015 46_[+5]_66 chr2R:14139929-14140049 0.00015 37_[+5]_75 chr3R:28654698-28654818 0.00015 17_[+5]_95 chr3L:11428542-11428662 0.00015 87_[+5]_25 chr3L:13904520-13904640 0.00015 38_[+5]_74 chr2R:9566811-9566931 0.00015 40_[+5]_72 chr3R:31822742-31822862 0.00018 70_[+5]_42 chr3R:24457619-24457739 0.00018 26_[+5]_86 chr3R:29458155-29458275 0.00018 60_[+5]_52 chr2R:23796402-23796522 0.00018 108_[+5]_4 chr2R:11116455-11116575 0.00018 63_[+5]_49 chrX:12431852-12431972 0.00018 11_[+5]_101 chr3R:18584667-18584787 0.00018 89_[+5]_23 chr3L:9340269-9340389 0.00021 61_[+5]_51 chr3L:2171005-2171125 0.00021 20_[+5]_92 chr3L:1637031-1637151 0.00021 84_[+5]_28 chrX:3190961-3191081 0.00021 104_[+5]_8 chr2L:2797520-2797640 0.00022 92_[+5]_20 chr2L:5147675-5147795 0.00024 53_[+5]_59 chr3R:12080731-12080851 0.00024 84_[+5]_28 chr3R:21581954-21582074 0.00025 111_[+5]_1 chrX:5637689-5637809 0.00027 109_[+5]_3 chrX:8115424-8115544 0.00028 93_[+5]_19 chr2R:25114380-25114500 0.00028 41_[+5]_71 chr2R:12252924-12253044 0.00028 3_[+5]_109 chr2L:15332709-15332829 0.00032 94_[+5]_18 chr2L:17621334-17621454 0.00032 77_[+5]_35 chr3L:7313847-7313967 0.00033 101_[+5]_11 chr3R:12467787-12467907 0.00033 43_[+5]_69 chr3R:7974216-7974336 0.00033 27_[+5]_85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTY MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYTCTCTY width=8 seqs=75 chr3R:23965303-23965423 ( 111) TTTCTCTC 1 chr3L:7847798-7847918 ( 91) TTTCTCTC 1 chr2L:12288646-12288766 ( 64) TTTCTCTC 1 chr2L:487013-487133 ( 38) TTTCTCTC 1 chrX:8414001-8414121 ( 52) TTTCTCTC 1 chr3R:22598332-22598452 ( 23) TTTCTCTC 1 chr3R:13258850-13258970 ( 24) TTTCTCTC 1 chrX:4694214-4694334 ( 40) TTTCTCTC 1 chr3L:21047873-21047993 ( 40) TTTCTCTC 1 chr3L:6997609-6997729 ( 67) TTTCTCTC 1 chrX:10247494-10247614 ( 90) TCTCTCTC 1 chr3R:27426168-27426288 ( 61) TCTCTCTC 1 chrX:10620375-10620495 ( 97) TCTCTCTC 1 chr3L:4430438-4430558 ( 28) TCTCTCTC 1 chr2R:18514897-18515017 ( 43) TCTCTCTC 1 chr3R:25783123-25783243 ( 55) TCTCTCTC 1 chr2R:9389980-9390100 ( 33) TCTCTCTC 1 chrX:2255163-2255283 ( 101) TCTCTCTC 1 chrX:16687525-16687645 ( 64) TCTCTCTC 1 chr2L:19519740-19519860 ( 81) TTTCTCTT 1 chr2L:9744737-9744857 ( 32) TTTCTCTT 1 chr3L:1275730-1275850 ( 46) TTTCTCTT 1 chr3L:6552541-6552661 ( 1) TTTCTCTT 1 chr2R:14959033-14959153 ( 42) TTTCTCTT 1 chr3R:18931838-18931958 ( 68) TTTCTCTT 1 chr3L:3747407-3747527 ( 25) TTTCTCTT 1 chr2L:3730171-3730291 ( 80) TTTCTCTT 1 chr3L:3828263-3828383 ( 76) TTTCTCTT 1 chr3R:23228459-23228579 ( 45) TTTCTCTT 1 chr2R:9519428-9519548 ( 94) TTTCTCTT 1 chr2L:3426044-3426164 ( 19) TTTCTCTT 1 chr3L:5664699-5664819 ( 105) TTTCTCTT 1 chr2L:13113702-13113822 ( 70) TTTCTCTT 1 chr3R:11543212-11543332 ( 76) TCTCTCTT 1 chr3R:30881141-30881261 ( 45) TTGCTCTC 1 chrX:11370308-11370428 ( 63) TTGCTCTC 1 chr2L:9272334-9272454 ( 63) GTTCTCTC 1 chrX:3332719-3332839 ( 48) TCGCTCTC 1 chrX:6317740-6317860 ( 111) TCGCTCTC 1 chrX:15633486-15633606 ( 13) TCGCTCTC 1 chr3L:9251757-9251877 ( 7) ATTCTCTC 1 chr2R:19231350-19231470 ( 106) ATTCTCTC 1 chr2R:14715864-14715984 ( 16) ATTCTCTC 1 chr3R:17916692-17916812 ( 21) ATTCTCTC 1 chr3R:19503445-19503565 ( 15) TTGCTCTT 1 chr3R:5414298-5414418 ( 47) TTGCTCTT 1 chr2R:14139929-14140049 ( 38) TTGCTCTT 1 chr3R:28654698-28654818 ( 18) TTGCTCTT 1 chr3L:11428542-11428662 ( 88) TTGCTCTT 1 chr3L:13904520-13904640 ( 39) GCTCTCTC 1 chr2R:9566811-9566931 ( 41) GCTCTCTC 1 chr3R:31822742-31822862 ( 71) GTTCTCTT 1 chr3R:24457619-24457739 ( 27) GTTCTCTT 1 chr3R:29458155-29458275 ( 61) ACTCTCTC 1 chr2R:23796402-23796522 ( 109) ACTCTCTC 1 chr2R:11116455-11116575 ( 64) ACTCTCTC 1 chrX:12431852-12431972 ( 12) ACTCTCTC 1 chr3R:18584667-18584787 ( 90) GTTCTCTT 1 chr3L:9340269-9340389 ( 62) ATTCTCTT 1 chr3L:2171005-2171125 ( 21) ATTCTCTT 1 chr3L:1637031-1637151 ( 85) TCGCTCTT 1 chrX:3190961-3191081 ( 105) ATTCTCTT 1 chr2L:2797520-2797640 ( 93) GCTCTCTT 1 chr2L:5147675-5147795 ( 54) ACTCTCTT 1 chr3R:12080731-12080851 ( 85) ACTCTCTT 1 chr3R:21581954-21582074 ( 112) GTGCTCTC 1 chrX:5637689-5637809 ( 110) ATGCTCTC 1 chrX:8115424-8115544 ( 94) GCGCTCTC 1 chr2R:25114380-25114500 ( 42) GCGCTCTC 1 chr2R:12252924-12253044 ( 4) GCGCTCTC 1 chr2L:15332709-15332829 ( 95) ATGCTCTT 1 chr2L:17621334-17621454 ( 78) ATGCTCTT 1 chr3L:7313847-7313967 ( 102) GCGCTCTT 1 chr3R:12467787-12467907 ( 44) GCGCTCTT 1 chr3R:7974216-7974336 ( 28) GCGCTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTY MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.732 E= 3.1e-028 -37 -1287 -30 114 -1287 80 -1287 118 -1287 -1287 28 141 -1287 217 -1287 -1287 -1287 -1287 -1287 188 -1287 217 -1287 -1287 -1287 -1287 -1287 188 -1287 126 -1287 78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTY MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 75 E= 3.1e-028 0.213333 0.000000 0.186667 0.600000 0.000000 0.386667 0.000000 0.613333 0.000000 0.000000 0.280000 0.720000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.533333 0.000000 0.466667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTY MEME-5 regular expression -------------------------------------------------------------------------------- [TA][TC][TG]CTCT[CT] -------------------------------------------------------------------------------- Time 30.81 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12252924-12253044 4.62e-05 58_[+1(1.31e-05)]_7_[+3(1.31e-05)]_\ [+5(6.46e-05)]_31 chr2L:21221919-21222039 3.77e-04 50_[+2(8.53e-05)]_17_[+2(1.65e-05)]_\ 37 chrX:3190961-3191081 1.45e-05 52_[+2(1.65e-05)]_1_[+4(1.65e-05)]_\ 4_[+4(1.65e-05)]_39 chr3L:9188328-9188448 6.70e-07 17_[+2(8.53e-05)]_13_[+4(2.97e-05)]_\ 2_[+4(4.58e-05)]_56_[+3(3.50e-05)] chr2L:2798986-2799106 1.94e-01 120 chr3R:14986264-14986384 6.65e-04 39_[+2(1.65e-05)]_1_[+4(7.27e-05)]_\ 1_[+2(1.65e-05)]_1_[+4(1.65e-05)]_24_[+4(2.97e-05)]_14 chr2R:9566811-9566931 2.76e-05 41_[+1(1.31e-05)]_[+1(1.31e-05)]_\ [+1(1.31e-05)]_[+1(1.31e-05)]_47 chrX:2743743-2743863 1.65e-03 51_[+4(1.65e-05)]_[+4(1.65e-05)]_\ [+4(5.95e-05)]_45 chr2L:13113702-13113822 1.83e-04 34_[+2(4.95e-05)]_9_[+2(4.95e-05)]_\ 10_[+5(4.86e-05)]_43 chr3L:625982-626102 5.52e-04 48_[+3(8.64e-05)]_64 chr3L:6997609-6997729 2.79e-05 18_[+1(2.42e-05)]_23_[+1(1.31e-05)]_\ 1_[+3(1.31e-05)]_[+5(1.60e-05)]_10_[+3(3.50e-05)]_28 chr2L:12134114-12134234 5.58e-08 22_[+1(2.42e-05)]_22_[+2(1.65e-05)]_\ 60 chrX:9588679-9588799 3.30e-04 36_[+2(2.97e-05)]_[+2(1.65e-05)]_13_\ [+4(1.65e-05)]_47 chr3R:10035314-10035434 4.50e-03 32_[+2(1.65e-05)]_[+2(1.65e-05)]_\ [+2(1.65e-05)]_[+2(1.65e-05)]_56 chrX:12869686-12869806 5.16e-01 120 chr3R:18584667-18584787 3.95e-05 77_[+3(4.85e-05)]_11_[+3(1.31e-05)]_\ 16 chr3L:19432364-19432484 2.09e-03 [+4(5.95e-05)]_38_[+4(5.95e-05)]_\ [+4(1.65e-05)]_9_[+2(1.65e-05)]_41 chr2R:24712821-24712941 2.98e-03 31_[+4(1.65e-05)]_9_[+2(1.65e-05)]_\ [+2(1.65e-05)]_1_[+4(1.65e-05)]_12_[+2(2.97e-05)]_18_[+2(2.97e-05)]_1 chr3L:9190299-9190419 3.25e-07 15_[+1(5.13e-05)]_70_[+4(1.65e-05)]_\ 9_[+2(4.95e-05)]_2 chr3L:5664699-5664819 1.90e-04 80_[+1(4.02e-05)]_16_[+5(4.86e-05)]_\ 8 chr3L:13904520-13904640 7.07e-06 38_[+3(2.42e-05)]_15_[+3(1.31e-05)]_\ 4_[+3(1.31e-05)]_39 chr2R:12868672-12868792 4.32e-05 18_[+3(2.42e-05)]_16_[+3(1.31e-05)]_\ 70 chr3L:17148817-17148937 2.39e-08 14_[+2(1.65e-05)]_16_[+5(1.60e-05)]_\ [+3(9.79e-05)]_4_[+2(1.65e-05)]_7_[+4(1.65e-05)]_39 chrX:9190803-9190923 4.88e-03 4_[+4(1.65e-05)]_10_[+4(1.65e-05)]_\ [+4(1.65e-05)]_[+4(1.65e-05)]_[+4(1.65e-05)]_[+4(1.65e-05)]_[+4(1.65e-05)]_\ [+4(1.65e-05)]_12_[+2(4.95e-05)]_22 chrX:3295643-3295763 3.65e-02 16_[+2(2.97e-05)]_96 chr3R:20204610-20204730 2.78e-07 22_[+2(1.65e-05)]_[+2(1.65e-05)]_\ [+2(1.65e-05)]_1_[+4(1.65e-05)]_37_[+1(4.02e-05)]_20 chr3R:9979486-9979606 4.89e-03 70_[+4(1.65e-05)]_[+4(1.65e-05)]_\ [+4(1.65e-05)]_[+4(1.65e-05)]_18 chrX:12471927-12472047 8.85e-02 37_[+2(4.95e-05)]_55_[+2(4.95e-05)]_\ 12 chrX:16687525-16687645 4.63e-05 44_[+1(1.31e-05)]_[+1(1.31e-05)]_1_\ [+3(1.31e-05)]_8_[+5(7.82e-05)]_35 chr2L:10757197-10757317 2.55e-01 22_[+2(6.54e-05)]_90 chr2L:2797520-2797640 1.09e-07 56_[+1(1.31e-05)]_1_[+3(1.31e-05)]_\ 20_[+1(4.02e-05)]_19 chr3L:10658865-10658985 1.01e-04 25_[+2(4.95e-05)]_25_[+1(7.83e-05)]_\ 54 chrX:17963460-17963580 4.99e-03 18_[+4(1.65e-05)]_[+4(1.65e-05)]_21_\ [+2(4.95e-05)]_57 chrX:1514214-1514334 3.88e-07 61_[+3(2.42e-05)]_18_[+4(2.97e-05)]_\ 25 chr3R:17916692-17916812 1.80e-05 39_[+1(1.31e-05)]_1_[+3(1.31e-05)]_\ 64 chr3R:7974216-7974336 8.67e-08 35_[+1(2.42e-05)]_[+1(2.42e-05)]_11_\ [+4(2.97e-05)]_50 chr3R:9359515-9359635 4.86e-03 29_[+4(1.65e-05)]_12_[+2(1.65e-05)]_\ 1_[+4(1.65e-05)]_54 chr3R:18094790-18094910 1.33e-03 120 chr3L:2896513-2896633 1.74e-03 10_[+4(4.58e-05)]_13_[+2(8.53e-05)]_\ 29_[+4(1.65e-05)]_10_[+4(7.27e-05)]_26 chr3R:14580145-14580265 4.88e-01 120 chr3R:21060074-21060194 9.98e-06 37_[+1(4.02e-05)]_23_[+4(5.95e-05)]_\ 44 chr3R:9460763-9460883 6.90e-03 16_[+2(8.53e-05)]_13_[+4(1.65e-05)]_\ [+2(2.97e-05)]_67 chr3R:12477801-12477921 6.02e-01 120 chr2L:9272334-9272454 7.50e-06 62_[+5(9.18e-05)]_23_[+3(2.42e-05)]_\ 2_[+3(2.42e-05)]_9 chrX:2255163-2255283 4.62e-05 83_[+1(1.31e-05)]_[+1(1.31e-05)]_\ [+1(1.31e-05)]_1_[+3(1.31e-05)]_4 chr3L:13902054-13902174 2.62e-07 73_[+1(1.31e-05)]_[+1(5.13e-05)]_31 chr2R:18407714-18407834 4.25e-04 120 chr2R:14715864-14715984 2.51e-05 64_[+1(1.31e-05)]_1_[+3(1.31e-05)]_\ 6_[+3(1.31e-05)]_25 chr2L:11879058-11879178 4.39e-05 30_[+4(4.58e-05)]_3_[+2(4.95e-05)]_\ 71 chr3R:27157675-27157795 4.38e-04 8_[+4(4.58e-05)]_27_[+4(1.65e-05)]_\ 69 chr2R:9389980-9390100 6.79e-06 18_[+3(1.31e-05)]_6_[+3(1.31e-05)]_\ 9_[+3(5.93e-05)]_16_[+3(1.31e-05)]_39 chr2L:3426044-3426164 5.38e-04 7_[+1(4.02e-05)]_3_[+5(4.86e-05)]_\ 40_[+3(5.93e-05)]_46 chr3L:12892528-12892648 2.76e-03 11_[+4(8.86e-05)]_25_[+2(1.65e-05)]_\ 1_[+4(1.65e-05)]_[+4(1.65e-05)]_51 chr3R:13240565-13240685 2.20e-02 48_[+4(2.97e-05)]_13_[+2(8.53e-05)]_\ 43 chr3L:22720837-22720957 5.15e-01 120 chr2R:9519428-9519548 4.63e-05 71_[+5(9.18e-05)]_2_[+3(1.31e-05)]_\ 4_[+5(4.86e-05)]_9_[+1(4.02e-05)]_2 chr2R:11232005-11232125 3.01e-03 25_[+4(1.65e-05)]_[+4(1.65e-05)]_11_\ [+4(4.58e-05)]_60 chr2R:9376758-9376878 2.46e-07 39_[+2(1.65e-05)]_[+2(1.65e-05)]_1_\ [+4(1.65e-05)]_27_[+3(4.85e-05)]_21 chr3R:7750058-7750178 9.77e-06 67_[+3(1.31e-05)]_9_[+5(1.60e-05)]_\ 28 chr3L:20105120-20105240 9.97e-01 120 chr3R:22733155-22733275 4.68e-05 [+1(6.47e-05)]_15_[+4(2.97e-05)]_89 chr3L:21193674-21193794 3.21e-02 120 chrX:11370308-11370428 1.41e-04 34_[+3(2.42e-05)]_11_[+1(1.31e-05)]_\ 1_[+5(7.82e-05)]_50 chr3R:24485121-24485241 3.90e-02 105_[+2(4.95e-05)]_7 chrX:19690190-19690310 4.09e-04 13_[+4(4.58e-05)]_10_[+4(4.58e-05)]_\ 66_[+2(6.54e-05)]_7 chr2R:9519628-9519748 1.05e-03 93_[+1(2.42e-05)]_19 chr2L:13084522-13084642 1.11e-02 53_[+2(4.95e-05)]_59 chr3R:24260579-24260699 2.31e-03 59_[+2(1.65e-05)]_1_[+4(1.65e-05)]_\ 44 chr3R:23228459-23228579 4.58e-05 44_[+5(4.86e-05)]_9_[+1(1.31e-05)]_\ [+1(1.31e-05)]_[+1(1.31e-05)]_[+1(1.31e-05)]_27 chr3L:3757821-3757941 9.29e-04 40_[+2(1.65e-05)]_[+2(1.65e-05)]_10_\ [+2(6.54e-05)]_46 chr2R:21175174-21175294 3.66e-07 64_[+1(1.31e-05)]_[+1(1.31e-05)]_\ [+1(5.13e-05)]_32 chr2L:1927530-1927650 1.34e-05 103_[+1(1.31e-05)]_9 chrX:10245351-10245471 7.33e-04 20_[+2(1.65e-05)]_1_[+4(1.65e-05)]_\ 83 chr2R:21843189-21843309 1.44e-03 22_[+2(1.65e-05)]_[+2(1.65e-05)]_1_\ [+4(1.65e-05)]_22_[+4(1.65e-05)]_43 chrX:17291761-17291881 1.44e-02 7_[+4(4.58e-05)]_21_[+2(4.95e-05)]_\ 76 chr3R:12467787-12467907 5.72e-06 44_[+1(7.83e-05)]_19_[+3(2.42e-05)]_\ 41 chr3R:25783123-25783243 2.04e-08 7_[+2(8.53e-05)]_26_[+1(1.31e-05)]_\ 2_[+1(1.31e-05)]_[+1(1.31e-05)]_[+1(1.31e-05)]_1_[+3(1.31e-05)]_36 chr3L:3828263-3828383 2.34e-05 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31_[+1(7.83e-05)]_1_[+1(1.31e-05)]_\ 1_[+3(1.31e-05)]_6_[+5(1.60e-05)]_49 chrX:19260063-19260183 5.07e-03 18_[+4(7.27e-05)]_1_[+2(1.65e-05)]_\ 1_[+4(1.65e-05)]_5_[+4(2.97e-05)]_63 chr3R:4565452-4565572 5.65e-05 87_[+2(4.95e-05)]_25 chr3R:11982666-11982786 5.19e-03 37_[+2(4.95e-05)]_75 chr2R:24903309-24903429 1.10e-05 67_[+1(2.42e-05)]_45 chr3L:7847798-7847918 3.09e-05 22_[+3(4.85e-05)]_28_[+3(2.42e-05)]_\ 5_[+1(1.31e-05)]_11_[+5(1.60e-05)]_22 chr3R:30281996-30282116 1.94e-05 96_[+1(1.31e-05)]_[+1(1.31e-05)]_8 chr3L:12914149-12914269 8.54e-01 120 chr4:388917-389037 1.97e-04 2_[+3(4.85e-05)]_5_[+3(8.64e-05)]_\ 97 chr3R:19015532-19015652 3.49e-05 42_[+3(1.31e-05)]_7_[+1(1.31e-05)]_\ 55 chr4:276469-276589 1.97e-03 87_[+4(2.97e-05)]_25 chr3R:27987907-27988027 6.01e-07 19_[+2(1.65e-05)]_1_[+4(1.65e-05)]_\ 14_[+4(5.95e-05)]_1_[+2(6.54e-05)]_53 chr2R:19395070-19395190 3.63e-05 56_[+3(1.31e-05)]_[+3(1.31e-05)]_4_\ [+3(2.42e-05)]_36 chr2L:21151182-21151302 6.46e-05 102_[+3(2.42e-05)]_10 chrX:7285521-7285641 2.89e-04 37_[+1(2.42e-05)]_1_[+3(5.93e-05)]_\ 66 chr3R:24667961-24668081 5.01e-03 35_[+4(1.65e-05)]_25_[+2(1.65e-05)]_\ 44 chr3R:18450419-18450539 1.16e-02 111_[+2(2.97e-05)]_1 chr2L:5147675-5147795 5.09e-02 120 chr3R:29760146-29760266 4.81e-03 54_[+2(1.65e-05)]_1_[+4(1.65e-05)]_\ 8_[+4(5.95e-05)]_33 chr3L:15625369-15625489 4.05e-04 83_[+5(9.18e-05)]_[+3(3.50e-05)]_21 chr3R:17920452-17920572 3.51e-02 79_[+2(4.95e-05)]_33 chr2R:12045059-12045179 7.06e-02 120 chrX:8414201-8414321 9.00e-01 120 chr3L:18539761-18539881 9.89e-01 120 chrX:3332719-3332839 4.63e-05 49_[+3(2.42e-05)]_1_[+1(1.31e-05)]_\ [+1(1.31e-05)]_9_[+3(1.31e-05)]_8_[+3(3.50e-05)]_13 chr3L:9340269-9340389 3.54e-04 47_[+3(2.42e-05)]_65 chrX:20411784-20411904 5.07e-03 23_[+4(1.65e-05)]_[+4(1.65e-05)]_21_\ [+4(1.65e-05)]_4_[+4(2.97e-05)]_[+4(1.65e-05)]_[+4(1.65e-05)]_4_\ [+4(2.97e-05)]_12 chrX:5637689-5637809 2.50e-05 46_[+3(1.31e-05)]_12_[+3(1.31e-05)]_\ 46 chrX:8115424-8115544 3.66e-04 20_[+1(2.42e-05)]_3_[+3(2.42e-05)]_\ 57_[+1(9.17e-05)]_16 chr3R:22998246-22998366 9.02e-02 8_[+2(6.54e-05)]_104 chr3R:23965303-23965423 2.15e-05 71_[+3(1.31e-05)]_16_[+1(2.42e-05)]_\ 9_[+3(1.31e-05)] chr3R:14064701-14064821 2.45e-04 13_[+3(2.42e-05)]_99 chr3R:24862730-24862850 2.16e-04 120 chr2R:19411395-19411515 6.74e-04 10_[+2(1.65e-05)]_32_[+4(1.65e-05)]_\ 15_[+2(2.97e-05)]_39 chrX:11372873-11372993 1.03e-03 29_[+2(1.65e-05)]_[+2(1.65e-05)]_1_\ [+4(1.65e-05)]_[+4(1.65e-05)]_58 chr3R:11984592-11984712 2.44e-03 120 chr2L:21618055-21618175 3.26e-02 64_[+2(4.95e-05)]_48 chr3L:13993518-13993638 3.45e-03 35_[+2(8.53e-05)]_4_[+2(1.65e-05)]_\ 2_[+4(1.65e-05)]_55 chrX:17657762-17657882 4.69e-02 120 chr3R:11543212-11543332 4.57e-05 48_[+5(7.82e-05)]_20_[+1(4.02e-05)]_\ 8_[+1(1.31e-05)]_1_[+3(1.31e-05)]_11 chr2L:19519740-19519860 4.20e-05 80_[+5(4.86e-05)]_32 chr3L:5665555-5665675 3.18e-09 28_[+1(1.31e-05)]_1_[+3(1.31e-05)]_\ 30_[+4(2.97e-05)]_37 chr2L:16798892-16799012 8.71e-03 74_[+5(4.86e-05)]_38 chr3L:1883323-1883443 3.24e-03 24_[+4(7.27e-05)]_21_[+4(1.65e-05)]_\ 31_[+4(1.65e-05)]_20 chr2R:13191576-13191696 4.90e-03 3_[+4(1.65e-05)]_4_[+4(1.65e-05)]_1_\ [+2(8.53e-05)]_2_[+2(1.65e-05)]_21_[+4(1.65e-05)]_49 chr2R:13620361-13620481 1.01e-03 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************