******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Tbp.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:2945658-2945778 1.0000 120 chrX:19175035-19175155 1.0000 120 chr3R:4479327-4479447 1.0000 120 chr3L:3593732-3593852 1.0000 120 chr3L:14946108-14946228 1.0000 120 chr2L:7542317-7542437 1.0000 120 chr2L:2945860-2945980 1.0000 120 chr3R:22633065-22633185 1.0000 120 chr2R:13979680-13979800 1.0000 120 chr2L:7071449-7071569 1.0000 120 chr3R:25999731-25999851 1.0000 120 chrX:19162798-19162918 1.0000 120 chr3R:24279464-24279584 1.0000 120 chr3L:19086407-19086527 1.0000 120 chr3R:15094392-15094512 1.0000 120 chr3L:18992943-18993063 1.0000 120 chr3L:9898871-9898991 1.0000 120 chr3L:8719826-8719946 1.0000 120 chrX:1135057-1135177 1.0000 120 chr3R:23735799-23735919 1.0000 120 chr3R:9214401-9214521 1.0000 120 chr3R:12477370-12477490 1.0000 120 chrX:2387656-2387776 1.0000 120 chr2R:9979308-9979428 1.0000 120 chr3L:748820-748940 1.0000 120 chr3L:8798739-8798859 1.0000 120 chr3L:1885209-1885329 1.0000 120 chr3R:26040111-26040231 1.0000 120 chr3L:21706360-21706480 1.0000 120 chr3R:31231307-31231427 1.0000 120 chr2R:18819218-18819338 1.0000 120 chr3R:13674810-13674930 1.0000 120 chr3R:24555979-24556099 1.0000 120 chr2R:24186864-24186984 1.0000 120 chr3R:22794129-22794249 1.0000 120 chrX:2112857-2112977 1.0000 120 chr2L:15478245-15478365 1.0000 120 chr3L:10246500-10246620 1.0000 120 chr3L:673508-673628 1.0000 120 chr3R:15263122-15263242 1.0000 120 chrX:7969507-7969627 1.0000 120 chr2R:15010929-15011049 1.0000 120 chr3L:7157047-7157167 1.0000 120 chr3L:21027424-21027544 1.0000 120 chr3R:31404993-31405113 1.0000 120 chrX:19637422-19637542 1.0000 120 chr3L:18439921-18440041 1.0000 120 chr2R:12780461-12780581 1.0000 120 chrX:17507239-17507359 1.0000 120 chrX:9247131-9247251 1.0000 120 chr3L:14975173-14975293 1.0000 120 chr2L:3825568-3825688 1.0000 120 chr3L:3072343-3072463 1.0000 120 chr3L:14972576-14972696 1.0000 120 chrX:15996971-15997091 1.0000 120 chr2L:3606715-3606835 1.0000 120 chr2L:19363505-19363625 1.0000 120 chr3R:9868743-9868863 1.0000 120 chrX:2585755-2585875 1.0000 120 chr3L:14969281-14969401 1.0000 120 chr3R:9768042-9768162 1.0000 120 chr3L:16419482-16419602 1.0000 120 chr3R:31458335-31458455 1.0000 120 chr3L:3143483-3143603 1.0000 120 chr2R:21101780-21101900 1.0000 120 chr2L:21156594-21156714 1.0000 120 chr3R:9628861-9628981 1.0000 120 chr3L:15336580-15336700 1.0000 120 chrX:18506959-18507079 1.0000 120 chr2R:18134323-18134443 1.0000 120 chr2R:9114067-9114187 1.0000 120 chr3R:9050704-9050824 1.0000 120 chr2L:10333648-10333768 1.0000 120 chr3R:8863303-8863423 1.0000 120 chr3R:17605142-17605262 1.0000 120 chr2L:19817273-19817393 1.0000 120 chr3R:19326205-19326325 1.0000 120 chr2L:17260755-17260875 1.0000 120 chr2R:22197317-22197437 1.0000 120 chrX:11368270-11368390 1.0000 120 chr3R:20832691-20832811 1.0000 120 chrX:2184669-2184789 1.0000 120 chr2R:9251955-9252075 1.0000 120 chr3R:26010763-26010883 1.0000 120 chr3R:23730372-23730492 1.0000 120 chr3R:31945736-31945856 1.0000 120 chr3R:13016472-13016592 1.0000 120 chrX:2065229-2065349 1.0000 120 chr3L:223998-224118 1.0000 120 chr2L:11445633-11445753 1.0000 120 chr3R:11773700-11773820 1.0000 120 chr2R:10026747-10026867 1.0000 120 chr3R:16338550-16338670 1.0000 120 chr2R:17716568-17716688 1.0000 120 chr3R:11372495-11372615 1.0000 120 chr3L:324605-324725 1.0000 120 chr2R:6494403-6494523 1.0000 120 chr2R:7387263-7387383 1.0000 120 chr2R:13934436-13934556 1.0000 120 chr3R:29799161-29799281 1.0000 120 chr2R:13586130-13586250 1.0000 120 chr2L:2365356-2365476 1.0000 120 chr2L:12692871-12692991 1.0000 120 chr3R:5600874-5600994 1.0000 120 chr3R:29255307-29255427 1.0000 120 chrX:8409119-8409239 1.0000 120 chr3R:18121919-18122039 1.0000 120 chrX:9042479-9042599 1.0000 120 chrX:9135153-9135273 1.0000 120 chrX:9554100-9554220 1.0000 120 chrX:19480045-19480165 1.0000 120 chrX:12611774-12611894 1.0000 120 chr3R:24057351-24057471 1.0000 120 chr3L:18398376-18398496 1.0000 120 chr3L:749069-749189 1.0000 120 chr2R:24797381-24797501 1.0000 120 chr3R:14278571-14278691 1.0000 120 chr2L:15333718-15333838 1.0000 120 chr3L:5366134-5366254 1.0000 120 chr3R:11741969-11742089 1.0000 120 chr2R:10645540-10645660 1.0000 120 chr3R:21186921-21187041 1.0000 120 chr3R:15803962-15804082 1.0000 120 chrX:3162780-3162900 1.0000 120 chrX:2790245-2790365 1.0000 120 chr3R:28600271-28600391 1.0000 120 chr2L:5093501-5093621 1.0000 120 chr2L:8415403-8415523 1.0000 120 chrX:19704171-19704291 1.0000 120 chr2L:21899360-21899480 1.0000 120 chr2R:20836215-20836335 1.0000 120 chr3L:9430177-9430297 1.0000 120 chrX:6279300-6279420 1.0000 120 chr3R:9550938-9551058 1.0000 120 chr2R:6632588-6632708 1.0000 120 chr3R:24031928-24032048 1.0000 120 chr3L:5765565-5765685 1.0000 120 chrX:10745148-10745268 1.0000 120 chr2L:8415618-8415738 1.0000 120 chr2R:24669168-24669288 1.0000 120 chr2R:21522376-21522496 1.0000 120 chr2R:12174248-12174368 1.0000 120 chr2R:8122917-8123037 1.0000 120 chr3R:30004699-30004819 1.0000 120 chrX:13755442-13755562 1.0000 120 chrX:17077890-17078010 1.0000 120 chr2R:21142019-21142139 1.0000 120 chr3L:14274137-14274257 1.0000 120 chr3R:21187140-21187260 1.0000 120 chr3R:23358850-23358970 1.0000 120 chr3L:20784930-20785050 1.0000 120 chr3L:1463695-1463815 1.0000 120 chr3R:29774570-29774690 1.0000 120 chr2R:23697960-23698080 1.0000 120 chr3R:28845118-28845238 1.0000 120 chr3R:4429094-4429214 1.0000 120 chrX:13616496-13616616 1.0000 120 chrX:487642-487762 1.0000 120 chr2R:10813443-10813563 1.0000 120 chr2L:7306935-7307055 1.0000 120 chr2R:20111229-20111349 1.0000 120 chr3R:11431637-11431757 1.0000 120 chr3R:16702975-16703095 1.0000 120 chr2L:5237473-5237593 1.0000 120 chr2R:9847878-9847998 1.0000 120 chr3L:22408094-22408214 1.0000 120 chr3L:16129495-16129615 1.0000 120 chr3L:16780036-16780156 1.0000 120 chr2R:14621552-14621672 1.0000 120 chr2R:18652923-18653043 1.0000 120 chr2R:22270676-22270796 1.0000 120 chr2R:17698981-17699101 1.0000 120 chr2L:18881335-18881455 1.0000 120 chr3R:14904127-14904247 1.0000 120 chr3R:22421044-22421164 1.0000 120 chr2R:19275502-19275622 1.0000 120 chr3R:29556180-29556300 1.0000 120 chr3L:3374180-3374300 1.0000 120 chr3L:699470-699590 1.0000 120 chr2R:8649519-8649639 1.0000 120 chr2R:20106530-20106650 1.0000 120 chr2L:11447788-11447908 1.0000 120 chr2L:14355167-14355287 1.0000 120 chr3R:26006045-26006165 1.0000 120 chr3R:5856349-5856469 1.0000 120 chr3R:9510278-9510398 1.0000 120 chr2R:10810915-10811035 1.0000 120 chr3R:12425994-12426114 1.0000 120 chr2L:14234176-14234296 1.0000 120 chr3L:5932589-5932709 1.0000 120 chr3L:21049789-21049909 1.0000 120 chr3R:26036929-26037049 1.0000 120 chr3L:21484027-21484147 1.0000 120 chr3R:9986086-9986206 1.0000 120 chr3R:24870762-24870882 1.0000 120 chr3L:9899072-9899192 1.0000 120 chr3R:21856257-21856377 1.0000 120 chr3R:17540094-17540214 1.0000 120 chrX:20257235-20257355 1.0000 120 chr2R:9971187-9971307 1.0000 120 chr3L:3090657-3090777 1.0000 120 chr3R:10350647-10350767 1.0000 120 chr3R:13030717-13030837 1.0000 120 chr2L:6079108-6079228 1.0000 120 chr3R:13683734-13683854 1.0000 120 chrX:13385102-13385222 1.0000 120 chr3R:20830387-20830507 1.0000 120 chr3R:23295448-23295568 1.0000 120 chr3R:5613109-5613229 1.0000 120 chr2R:14981158-14981278 1.0000 120 chr2L:4892072-4892192 1.0000 120 chr3R:21065103-21065223 1.0000 120 chr2L:7220070-7220190 1.0000 120 chr2R:9398672-9398792 1.0000 120 chr3L:7356631-7356751 1.0000 120 chr3R:25265753-25265873 1.0000 120 chr3L:19062903-19063023 1.0000 120 chrX:4105993-4106113 1.0000 120 chr2L:14490668-14490788 1.0000 120 chr2R:23580832-23580952 1.0000 120 chr2L:2753113-2753233 1.0000 120 chr3R:16748707-16748827 1.0000 120 chr2R:14618581-14618701 1.0000 120 chr2R:22688913-22689033 1.0000 120 chr3R:23118072-23118192 1.0000 120 chr3R:15973252-15973372 1.0000 120 chrX:2732209-2732329 1.0000 120 chr3L:16581566-16581686 1.0000 120 chr3L:17644837-17644957 1.0000 120 chr3R:5474663-5474783 1.0000 120 chr2R:13583927-13584047 1.0000 120 chr3R:31609739-31609859 1.0000 120 chr2R:19451607-19451727 1.0000 120 chr2L:19127130-19127250 1.0000 120 chrX:16422655-16422775 1.0000 120 chr2L:21215141-21215261 1.0000 120 chr2L:7281594-7281714 1.0000 120 chr2L:5009753-5009873 1.0000 120 chr3R:24349059-24349179 1.0000 120 chr2L:11988024-11988144 1.0000 120 chr3L:13228532-13228652 1.0000 120 chr3R:24294945-24295065 1.0000 120 chr2L:1420416-1420536 1.0000 120 chr2L:18443292-18443412 1.0000 120 chr2L:3457220-3457340 1.0000 120 chr2R:10541684-10541804 1.0000 120 chr3R:7474951-7475071 1.0000 120 chr3R:27636425-27636545 1.0000 120 chr2R:6501796-6501916 1.0000 120 chrX:11339653-11339773 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Tbp/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Tbp.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.285 C 0.219 G 0.219 T 0.277 Background letter frequencies (from file dataset with add-one prior applied): A 0.285 C 0.219 G 0.219 T 0.277 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGAGAGCR MEME-1 width = 8 sites = 24 llr = 223 E-value = 1.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGAGCR MEME-1 Description -------------------------------------------------------------------------------- Simplified A a:9:9:23 pos.-specific C ::1:::8: probability G :a:a1a:7 matrix T :::::::: bits 2.2 * * * 2.0 * * * 1.8 * * * 1.5 **** ** Relative 1.3 **** ** Entropy 1.1 ******** (13.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAGCG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGCR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21065103-21065223 97 1.17e-05 ACTTCCAGCG AGAGAGCG CGAGTATAAA chr3R:23295448-23295568 90 1.17e-05 CGTGTGTGGG AGAGAGCG CTTCGTGTGT chr2L:6079108-6079228 82 1.17e-05 GGCGAGATAG AGAGAGCG AGCGAGAAAA chr2R:20106530-20106650 84 1.17e-05 GCTAGATCCG AGAGAGCG GAGAGAGATT chr2R:20111229-20111349 69 1.17e-05 gcagcagagc agagagcg aaagcagcgc chr3R:29774570-29774690 56 1.17e-05 agagagagcc agagagcg cgagCAGCTC chr2L:5093501-5093621 41 1.17e-05 ATTACGAAGA AGAGAGCG TTGCGGGTTG chr2L:15333718-15333838 59 1.17e-05 GGAACGCCCG AGAGAGCG TTCTCTTTTG chr2L:19127130-19127250 81 2.68e-05 ATTTATTAGT AGAGAGCA TCACTGTTCC chr2L:2753113-2753233 40 2.68e-05 AGAGCGAAAA AGAGAGCA GCGAGAGCGT chr3L:3090657-3090777 37 2.68e-05 TCAGCCCAAA AGAGAGCA ACAGTTTTTA chr3R:24870762-24870882 40 2.68e-05 CCGGAGGGAT AGAGAGCA CTGAGTAAAA chr3L:14969281-14969401 21 2.68e-05 GAGAAACCAA AGAGAGCA AATCGTATAT chrX:2387656-2387776 107 2.68e-05 ACCAACCACC AGAGAGCA AGCAGC chr2R:8649519-8649639 34 4.20e-05 CCGCTGGGCA agagagag tgagagagag chr3R:29556180-29556300 93 4.20e-05 CACGGGAGTG AGAGAGAG GCACGCTCTA chr2R:22270676-22270796 78 4.20e-05 agcagcagag agagagag agCCAAGAGC chr2R:19275502-19275622 58 5.99e-05 TGCGCGAAAG AGAGGGCG CGAGGGTGGA chr3L:10246500-10246620 107 5.99e-05 TCCTGCCGAT AGAGGGCG CTAGTG chr3R:22633065-22633185 105 5.99e-05 CCGCCAAGGG AGCGAGCG AGTGAAAG chr2R:19451607-19451727 2 6.89e-05 G AGAGCGCG GGCTTTTATA chr2R:23580832-23580952 52 9.76e-05 TAGCGAAGCG CGAGAGCG CCGCTCCCGA chr3L:7157047-7157167 25 9.76e-05 GAAAAATTAC AGAGAGAA TGCGTTGCGA chr3L:1463695-1463815 81 1.21e-04 TGCACCGCAC AGCGAGCA CTTATAAAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGCR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21065103-21065223 1.2e-05 96_[+1]_16 chr3R:23295448-23295568 1.2e-05 89_[+1]_23 chr2L:6079108-6079228 1.2e-05 81_[+1]_31 chr2R:20106530-20106650 1.2e-05 83_[+1]_29 chr2R:20111229-20111349 1.2e-05 68_[+1]_44 chr3R:29774570-29774690 1.2e-05 55_[+1]_57 chr2L:5093501-5093621 1.2e-05 40_[+1]_72 chr2L:15333718-15333838 1.2e-05 58_[+1]_54 chr2L:19127130-19127250 2.7e-05 80_[+1]_32 chr2L:2753113-2753233 2.7e-05 39_[+1]_73 chr3L:3090657-3090777 2.7e-05 36_[+1]_76 chr3R:24870762-24870882 2.7e-05 39_[+1]_73 chr3L:14969281-14969401 2.7e-05 20_[+1]_92 chrX:2387656-2387776 2.7e-05 106_[+1]_6 chr2R:8649519-8649639 4.2e-05 33_[+1]_79 chr3R:29556180-29556300 4.2e-05 92_[+1]_20 chr2R:22270676-22270796 4.2e-05 77_[+1]_35 chr2R:19275502-19275622 6e-05 57_[+1]_55 chr3L:10246500-10246620 6e-05 106_[+1]_6 chr3R:22633065-22633185 6e-05 104_[+1]_8 chr2R:19451607-19451727 6.9e-05 1_[+1]_111 chr2R:23580832-23580952 9.8e-05 51_[+1]_61 chr3L:7157047-7157167 9.8e-05 24_[+1]_88 chr3L:1463695-1463815 0.00012 80_[+1]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGCR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGAGCR width=8 seqs=24 chr3R:21065103-21065223 ( 97) AGAGAGCG 1 chr3R:23295448-23295568 ( 90) AGAGAGCG 1 chr2L:6079108-6079228 ( 82) AGAGAGCG 1 chr2R:20106530-20106650 ( 84) AGAGAGCG 1 chr2R:20111229-20111349 ( 69) AGAGAGCG 1 chr3R:29774570-29774690 ( 56) AGAGAGCG 1 chr2L:5093501-5093621 ( 41) AGAGAGCG 1 chr2L:15333718-15333838 ( 59) AGAGAGCG 1 chr2L:19127130-19127250 ( 81) AGAGAGCA 1 chr2L:2753113-2753233 ( 40) AGAGAGCA 1 chr3L:3090657-3090777 ( 37) AGAGAGCA 1 chr3R:24870762-24870882 ( 40) AGAGAGCA 1 chr3L:14969281-14969401 ( 21) AGAGAGCA 1 chrX:2387656-2387776 ( 107) AGAGAGCA 1 chr2R:8649519-8649639 ( 34) AGAGAGAG 1 chr3R:29556180-29556300 ( 93) AGAGAGAG 1 chr2R:22270676-22270796 ( 78) AGAGAGAG 1 chr2R:19275502-19275622 ( 58) AGAGGGCG 1 chr3L:10246500-10246620 ( 107) AGAGGGCG 1 chr3R:22633065-22633185 ( 105) AGCGAGCG 1 chr2R:19451607-19451727 ( 2) AGAGCGCG 1 chr2R:23580832-23580952 ( 52) CGAGAGCG 1 chr3L:7157047-7157167 ( 25) AGAGAGAA 1 chr3L:1463695-1463815 ( 81) AGCGAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGCR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1076 E= 1.3e+001 175 -239 -1123 -1123 -1123 -1123 219 -1123 169 -139 -1123 -1123 -1123 -1123 219 -1123 162 -239 -139 -1123 -1123 -1123 219 -1123 -77 193 -1123 -1123 23 -1123 161 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGCR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.3e+001 0.958333 0.041667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.875000 0.041667 0.083333 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGCR MEME-1 regular expression -------------------------------------------------------------------------------- AGAGAGC[GA] -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGRCC MEME-2 width = 8 sites = 12 llr = 127 E-value = 2.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::6:: pos.-specific C :::1::aa probability G a:a:a4:: matrix T :a:9:::: bits 2.2 * * * ** 2.0 * * * ** 1.8 *** * ** 1.5 ***** ** Relative 1.3 ***** ** Entropy 1.1 ******** (15.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGACC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16422655-16422775 79 1.10e-05 ACAGTGGTAA GTGTGACC ACGCATGCGT chrX:4105993-4106113 28 1.10e-05 CCCAGGCCCA GTGTGACC GTGCAACCGC chr3R:21856257-21856377 50 1.10e-05 ATATGGCGCA GTGTGACC AGTTGCTCCC chr3R:24870762-24870882 103 1.10e-05 GCGGCCTGCA GTGTGACC GTACCGCGGC chr3R:22421044-22421164 7 1.10e-05 CTTCAA GTGTGACC ATAGCAAGCC chr3R:28845118-28845238 35 1.10e-05 ATAAATACCG GTGTGACC GTCACCGCTA chrX:9247131-9247251 6 1.10e-05 GGAGA GTGTGACC GTATACGCGT chr3R:24294945-24295065 6 1.95e-05 TATCA GTGTGGCC ATGCATGTTG chr2R:19451607-19451727 31 1.95e-05 GATGGCCGCA GTGTGGCC ATACTACATG chr2L:12692871-12692991 50 1.95e-05 GTTAAGGAAA GTGTGGCC GCACTCGCTG chr3R:16338550-16338670 30 1.95e-05 TTGTTTGCCA GTGTGGCC GTGCTGCAAA chr3R:20830387-20830507 4 3.49e-05 TTG GTGCGGCC TTGGTGCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16422655-16422775 1.1e-05 78_[+2]_34 chrX:4105993-4106113 1.1e-05 27_[+2]_85 chr3R:21856257-21856377 1.1e-05 49_[+2]_63 chr3R:24870762-24870882 1.1e-05 102_[+2]_10 chr3R:22421044-22421164 1.1e-05 6_[+2]_106 chr3R:28845118-28845238 1.1e-05 34_[+2]_78 chrX:9247131-9247251 1.1e-05 5_[+2]_107 chr3R:24294945-24295065 1.9e-05 5_[+2]_107 chr2R:19451607-19451727 1.9e-05 30_[+2]_82 chr2L:12692871-12692991 1.9e-05 49_[+2]_63 chr3R:16338550-16338670 1.9e-05 29_[+2]_83 chr3R:20830387-20830507 3.5e-05 3_[+2]_109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGRCC width=8 seqs=12 chrX:16422655-16422775 ( 79) GTGTGACC 1 chrX:4105993-4106113 ( 28) GTGTGACC 1 chr3R:21856257-21856377 ( 50) GTGTGACC 1 chr3R:24870762-24870882 ( 103) GTGTGACC 1 chr3R:22421044-22421164 ( 7) GTGTGACC 1 chr3R:28845118-28845238 ( 35) GTGTGACC 1 chrX:9247131-9247251 ( 6) GTGTGACC 1 chr3R:24294945-24295065 ( 6) GTGTGGCC 1 chr2R:19451607-19451727 ( 31) GTGTGGCC 1 chr2L:12692871-12692991 ( 50) GTGTGGCC 1 chr3R:16338550-16338670 ( 30) GTGTGGCC 1 chr3R:20830387-20830507 ( 4) GTGCGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8592 E= 2.3e+002 -1023 -1023 219 -1023 -1023 -1023 -1023 185 -1023 -1023 219 -1023 -1023 -139 -1023 172 -1023 -1023 219 -1023 103 -1023 93 -1023 -1023 219 -1023 -1023 -1023 219 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.3e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.000000 0.916667 0.000000 0.000000 1.000000 0.000000 0.583333 0.000000 0.416667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 regular expression -------------------------------------------------------------------------------- GTGTG[AG]CC -------------------------------------------------------------------------------- Time 13.71 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGCTGGC MEME-3 width = 8 sites = 11 llr = 113 E-value = 8.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGCTGGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::a:22a probability G :7a::88: matrix T :3::a::: bits 2.2 * ** * 2.0 * ** * 1.8 * *** * 1.5 * ****** Relative 1.3 ******** Entropy 1.1 ******** (14.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGGCTGGC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTGGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6501796-6501916 111 6.69e-06 CTAAGCCATT CGGCTGGC AC chr2R:20106530-20106650 55 6.69e-06 ATAGAATTCC CGGCTGGC GAAAAAGGGA chr2R:10645540-10645660 110 6.69e-06 TCAATATTGT CGGCTGGC CTC chr2R:21101780-21101900 65 6.69e-06 ACTCCTGCTT CGGCTGGC ATTCGTGTGC chr2R:8122917-8123037 22 1.52e-05 CGATTTTGTG CTGCTGGC GTCTCGCTGT chr3L:223998-224118 35 1.52e-05 AACAGTTTCC CTGCTGGC TGAGACAAGA chr2L:3606715-3606835 42 1.52e-05 CTGACTGCAA CTGCTGGC AGGGCGACCC chr3L:1463695-1463815 100 2.85e-05 TTATAAAGGC CGGCTGCC TTGCCTTTCG chrX:8409119-8409239 111 2.85e-05 CATACGCACA CGGCTCGC GG chr2L:11445633-11445753 46 2.85e-05 CGGCTTTGTT CGGCTGCC TTCGTGAGCA chr3L:15336580-15336700 30 2.85e-05 CAGCCCCCTT CGGCTCGC GTTCGGCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTGGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6501796-6501916 6.7e-06 110_[+3]_2 chr2R:20106530-20106650 6.7e-06 54_[+3]_58 chr2R:10645540-10645660 6.7e-06 109_[+3]_3 chr2R:21101780-21101900 6.7e-06 64_[+3]_48 chr2R:8122917-8123037 1.5e-05 21_[+3]_91 chr3L:223998-224118 1.5e-05 34_[+3]_78 chr2L:3606715-3606835 1.5e-05 41_[+3]_71 chr3L:1463695-1463815 2.9e-05 99_[+3]_13 chrX:8409119-8409239 2.9e-05 110_[+3]_2 chr2L:11445633-11445753 2.9e-05 45_[+3]_67 chr3L:15336580-15336700 2.9e-05 29_[+3]_83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTGGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGCTGGC width=8 seqs=11 chr2R:6501796-6501916 ( 111) CGGCTGGC 1 chr2R:20106530-20106650 ( 55) CGGCTGGC 1 chr2R:10645540-10645660 ( 110) CGGCTGGC 1 chr2R:21101780-21101900 ( 65) CGGCTGGC 1 chr2R:8122917-8123037 ( 22) CTGCTGGC 1 chr3L:223998-224118 ( 35) CTGCTGGC 1 chr2L:3606715-3606835 ( 42) CTGCTGGC 1 chr3L:1463695-1463815 ( 100) CGGCTGCC 1 chrX:8409119-8409239 ( 111) CGGCTCGC 1 chr2L:11445633-11445753 ( 46) CGGCTGCC 1 chr3L:15336580-15336700 ( 30) CGGCTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTGGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 8.1e+003 -1010 219 -1010 -1010 -1010 -1010 173 -2 -1010 -1010 219 -1010 -1010 219 -1010 -1010 -1010 -1010 -1010 185 -1010 -27 190 -1010 -1010 -27 190 -1010 -1010 219 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTGGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 8.1e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.727273 0.272727 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.181818 0.818182 0.000000 0.000000 0.181818 0.818182 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTGGC MEME-3 regular expression -------------------------------------------------------------------------------- C[GT]GCTGGC -------------------------------------------------------------------------------- Time 19.97 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGSCAG MEME-4 width = 8 sites = 14 llr = 137 E-value = 8.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGSCAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::1:::91 pos.-specific C :a1:6a1: probability G a::a4::9 matrix T ::9::::: bits 2.2 ** * * 2.0 ** * * 1.8 ** * * 1.5 ** * *** Relative 1.3 ** ***** Entropy 1.1 ******** (14.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCCAG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGSCAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:21215141-21215261 76 8.71e-06 CCATGCCGGC GCTGCCAG AAGCAGTTGG chrX:13755442-13755562 7 8.71e-06 GACCGT GCTGCCAG ACTGTTCGAT chr3R:14278571-14278691 81 8.71e-06 AAACGCCATA GCTGCCAG CACTGGCTTA chr3R:31945736-31945856 87 8.71e-06 ATACTTTTGG GCTGCCAG TGAGAAGTCA chrX:1135057-1135177 68 8.71e-06 AAGAGATTTT GCTGCCAG ATGAACCGCT chr3R:7474951-7475071 113 1.74e-05 GGAATTACAA GCTGGCAG chr3R:20830387-20830507 48 1.74e-05 CGTTGGTGGC GCTGGCAG ACATTTCCCC chr2L:5237473-5237593 11 1.74e-05 GCGAGAAAAT GCTGGCAG GCGTTTAAAA chr3R:26010763-26010883 26 1.74e-05 GGTGCGTGTC GCTGGCAG GGGTCCGTTC chr3L:3072343-3072463 74 1.74e-05 TGCACACACA GCTGGCAG TTGTTGTTTT chrX:9554100-9554220 64 2.88e-05 CGGCCATCGT GCTGCCAA CTTGGCTATT chr2L:11445633-11445753 13 4.23e-05 ACGAATAACA GCCGCCAG AAGTCGTCGG chr3L:14946108-14946228 28 4.23e-05 TGTAGGTCTA GCTGCCCG GCCTTTTATA chr3L:21706360-21706480 60 1.20e-04 CAGTTTGACG GCAGCCAA GTCGAACTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGSCAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:21215141-21215261 8.7e-06 75_[+4]_37 chrX:13755442-13755562 8.7e-06 6_[+4]_106 chr3R:14278571-14278691 8.7e-06 80_[+4]_32 chr3R:31945736-31945856 8.7e-06 86_[+4]_26 chrX:1135057-1135177 8.7e-06 67_[+4]_45 chr3R:7474951-7475071 1.7e-05 112_[+4] chr3R:20830387-20830507 1.7e-05 47_[+4]_65 chr2L:5237473-5237593 1.7e-05 10_[+4]_102 chr3R:26010763-26010883 1.7e-05 25_[+4]_87 chr3L:3072343-3072463 1.7e-05 73_[+4]_39 chrX:9554100-9554220 2.9e-05 63_[+4]_49 chr2L:11445633-11445753 4.2e-05 12_[+4]_100 chr3L:14946108-14946228 4.2e-05 27_[+4]_85 chr3L:21706360-21706480 0.00012 59_[+4]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGSCAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGSCAG width=8 seqs=14 chr2L:21215141-21215261 ( 76) GCTGCCAG 1 chrX:13755442-13755562 ( 7) GCTGCCAG 1 chr3R:14278571-14278691 ( 81) GCTGCCAG 1 chr3R:31945736-31945856 ( 87) GCTGCCAG 1 chrX:1135057-1135177 ( 68) GCTGCCAG 1 chr3R:7474951-7475071 ( 113) GCTGGCAG 1 chr3R:20830387-20830507 ( 48) GCTGGCAG 1 chr2L:5237473-5237593 ( 11) GCTGGCAG 1 chr3R:26010763-26010883 ( 26) GCTGGCAG 1 chr3L:3072343-3072463 ( 74) GCTGGCAG 1 chrX:9554100-9554220 ( 64) GCTGCCAA 1 chr2L:11445633-11445753 ( 13) GCCGCCAG 1 chr3L:14946108-14946228 ( 28) GCTGCCCG 1 chr3L:21706360-21706480 ( 60) GCAGCCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGSCAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.02832 E= 8.5e+004 -1045 -1045 219 -1045 -1045 219 -1045 -1045 -199 -162 -1045 163 -1045 -1045 219 -1045 -1045 155 71 -1045 -1045 219 -1045 -1045 171 -162 -1045 -1045 -99 -1045 197 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGSCAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 8.5e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.071429 0.071429 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.642857 0.357143 0.000000 0.000000 1.000000 0.000000 0.000000 0.928571 0.071429 0.000000 0.000000 0.142857 0.000000 0.857143 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGSCAG MEME-4 regular expression -------------------------------------------------------------------------------- GCTG[CG]CAG -------------------------------------------------------------------------------- Time 26.18 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGAGCGG MEME-5 width = 8 sites = 2 llr = 24 E-value = 2.8e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGAGCGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C :a:::a:: probability G a:a:a:aa matrix T :::::::: bits 2.2 *** **** 2.0 *** **** 1.8 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGAGCGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGCGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:18652923-18653043 106 6.89e-06 CTGGAGTGGT GCGAGCGG GACGGCG chr2L:3606715-3606835 104 6.89e-06 GACGAGGGTG GCGAGCGG CCCGACCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGCGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18652923-18653043 6.9e-06 105_[+5]_7 chr2L:3606715-3606835 6.9e-06 103_[+5]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGCGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGAGCGG width=8 seqs=2 chr2R:18652923-18653043 ( 106) GCGAGCGG 1 chr2L:3606715-3606835 ( 104) GCGAGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGCGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 2.8e+005 -765 -765 219 -765 -765 218 -765 -765 -765 -765 219 -765 181 -765 -765 -765 -765 -765 219 -765 -765 218 -765 -765 -765 -765 219 -765 -765 -765 219 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGCGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.8e+005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGCGG MEME-5 regular expression -------------------------------------------------------------------------------- GCGAGCGG -------------------------------------------------------------------------------- Time 32.36 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2945658-2945778 1.00e+00 120 chrX:19175035-19175155 4.08e-01 120 chr3R:4479327-4479447 9.63e-01 120 chr3L:3593732-3593852 2.82e-01 120 chr3L:14946108-14946228 1.43e-01 27_[+4(4.23e-05)]_85 chr2L:7542317-7542437 8.95e-01 120 chr2L:2945860-2945980 9.55e-01 120 chr3R:22633065-22633185 9.00e-04 104_[+1(5.99e-05)]_8 chr2R:13979680-13979800 9.75e-01 120 chr2L:7071449-7071569 8.46e-02 120 chr3R:25999731-25999851 8.05e-01 120 chrX:19162798-19162918 5.08e-01 120 chr3R:24279464-24279584 1.03e-01 120 chr3L:19086407-19086527 8.68e-01 120 chr3R:15094392-15094512 9.74e-01 120 chr3L:18992943-18993063 3.47e-02 5_[+3(6.06e-05)]_107 chr3L:9898871-9898991 2.01e-01 120 chr3L:8719826-8719946 1.39e-01 120 chrX:1135057-1135177 3.32e-03 67_[+4(8.71e-06)]_45 chr3R:23735799-23735919 1.97e-01 120 chr3R:9214401-9214521 1.00e+00 120 chr3R:12477370-12477490 9.95e-01 120 chrX:2387656-2387776 3.56e-02 106_[+1(2.68e-05)]_6 chr2R:9979308-9979428 5.59e-02 120 chr3L:748820-748940 9.96e-01 120 chr3L:8798739-8798859 7.56e-01 120 chr3L:1885209-1885329 3.48e-02 120 chr3R:26040111-26040231 7.44e-03 120 chr3L:21706360-21706480 3.01e-02 120 chr3R:31231307-31231427 3.40e-01 120 chr2R:18819218-18819338 1.00e+00 120 chr3R:13674810-13674930 6.97e-01 120 chr3R:24555979-24556099 5.34e-01 120 chr2R:24186864-24186984 1.74e-01 120 chr3R:22794129-22794249 7.15e-01 120 chrX:2112857-2112977 4.11e-01 120 chr2L:15478245-15478365 5.61e-01 120 chr3L:10246500-10246620 1.75e-01 106_[+1(5.99e-05)]_6 chr3L:673508-673628 6.65e-01 120 chr3R:15263122-15263242 4.02e-02 120 chrX:7969507-7969627 2.72e-01 120 chr2R:15010929-15011049 2.32e-02 120 chr3L:7157047-7157167 1.83e-02 24_[+1(9.76e-05)]_88 chr3L:21027424-21027544 9.89e-01 120 chr3R:31404993-31405113 9.39e-01 120 chrX:19637422-19637542 1.66e-02 120 chr3L:18439921-18440041 7.86e-02 120 chr2R:12780461-12780581 3.21e-01 120 chrX:17507239-17507359 9.83e-01 120 chrX:9247131-9247251 4.75e-02 5_[+2(1.10e-05)]_107 chr3L:14975173-14975293 3.80e-01 120 chr2L:3825568-3825688 9.27e-03 120 chr3L:3072343-3072463 4.12e-04 73_[+4(1.74e-05)]_39 chr3L:14972576-14972696 6.50e-01 120 chrX:15996971-15997091 1.58e-01 120 chr2L:3606715-3606835 3.83e-07 41_[+3(1.52e-05)]_54_[+5(6.89e-06)]_\ 9 chr2L:19363505-19363625 3.19e-01 120 chr3R:9868743-9868863 9.21e-01 120 chrX:2585755-2585875 1.16e-01 120 chr3L:14969281-14969401 1.94e-02 20_[+1(2.68e-05)]_92 chr3R:9768042-9768162 4.92e-01 120 chr3L:16419482-16419602 9.98e-01 120 chr3R:31458335-31458455 6.35e-02 18_[+3(5.22e-05)]_94 chr3L:3143483-3143603 4.89e-02 120 chr2R:21101780-21101900 1.79e-02 64_[+3(6.69e-06)]_48 chr2L:21156594-21156714 5.15e-02 120 chr3R:9628861-9628981 8.87e-01 120 chr3L:15336580-15336700 2.01e-02 29_[+3(2.85e-05)]_83 chrX:18506959-18507079 5.50e-01 120 chr2R:18134323-18134443 2.49e-01 120 chr2R:9114067-9114187 9.98e-01 120 chr3R:9050704-9050824 4.92e-01 120 chr2L:10333648-10333768 9.01e-01 120 chr3R:8863303-8863423 2.56e-01 120 chr3R:17605142-17605262 3.79e-01 120 chr2L:19817273-19817393 9.80e-01 120 chr3R:19326205-19326325 9.38e-01 120 chr2L:17260755-17260875 3.44e-02 39_[+2(7.41e-05)]_73 chr2R:22197317-22197437 8.38e-01 120 chrX:11368270-11368390 9.83e-01 120 chr3R:20832691-20832811 2.58e-01 120 chrX:2184669-2184789 7.25e-01 120 chr2R:9251955-9252075 9.74e-02 120 chr3R:26010763-26010883 2.77e-03 25_[+4(1.74e-05)]_87 chr3R:23730372-23730492 2.02e-01 120 chr3R:31945736-31945856 7.44e-03 86_[+4(8.71e-06)]_26 chr3R:13016472-13016592 7.47e-01 120 chrX:2065229-2065349 1.00e+00 120 chr3L:223998-224118 5.21e-04 34_[+3(1.52e-05)]_78 chr2L:11445633-11445753 4.62e-04 12_[+4(4.23e-05)]_25_[+3(2.85e-05)]_\ 67 chr3R:11773700-11773820 4.60e-02 120 chr2R:10026747-10026867 9.29e-01 120 chr3R:16338550-16338670 1.53e-02 29_[+2(1.95e-05)]_83 chr2R:17716568-17716688 2.58e-01 120 chr3R:11372495-11372615 1.67e-01 120 chr3L:324605-324725 9.66e-01 120 chr2R:6494403-6494523 6.66e-02 59_[+2(5.41e-05)]_53 chr2R:7387263-7387383 4.35e-01 120 chr2R:13934436-13934556 4.38e-01 120 chr3R:29799161-29799281 8.21e-01 120 chr2R:13586130-13586250 3.90e-01 120 chr2L:2365356-2365476 5.13e-01 120 chr2L:12692871-12692991 4.42e-02 49_[+2(1.95e-05)]_63 chr3R:5600874-5600994 6.50e-01 120 chr3R:29255307-29255427 1.35e-02 120 chrX:8409119-8409239 4.07e-03 110_[+3(2.85e-05)]_2 chr3R:18121919-18122039 6.66e-03 120 chrX:9042479-9042599 3.00e-01 120 chrX:9135153-9135273 1.75e-01 120 chrX:9554100-9554220 1.51e-02 63_[+4(2.88e-05)]_49 chrX:19480045-19480165 1.95e-02 120 chrX:12611774-12611894 6.13e-01 120 chr3R:24057351-24057471 2.31e-02 120 chr3L:18398376-18398496 8.63e-01 120 chr3L:749069-749189 9.56e-01 120 chr2R:24797381-24797501 2.57e-01 120 chr3R:14278571-14278691 8.04e-03 80_[+4(8.71e-06)]_32 chr2L:15333718-15333838 3.27e-02 58_[+1(1.17e-05)]_54 chr3L:5366134-5366254 2.62e-01 120 chr3R:11741969-11742089 8.42e-01 120 chr2R:10645540-10645660 9.78e-03 109_[+3(6.69e-06)]_3 chr3R:21186921-21187041 5.90e-01 120 chr3R:15803962-15804082 9.31e-01 120 chrX:3162780-3162900 1.80e-01 120 chrX:2790245-2790365 3.28e-01 120 chr3R:28600271-28600391 7.96e-01 120 chr2L:5093501-5093621 2.31e-03 40_[+1(1.17e-05)]_72 chr2L:8415403-8415523 1.00e+00 120 chrX:19704171-19704291 9.64e-01 120 chr2L:21899360-21899480 8.23e-01 120 chr2R:20836215-20836335 9.83e-01 120 chr3L:9430177-9430297 2.82e-01 120 chrX:6279300-6279420 8.64e-02 120 chr3R:9550938-9551058 1.00e+00 120 chr2R:6632588-6632708 8.51e-01 120 chr3R:24031928-24032048 9.95e-01 120 chr3L:5765565-5765685 6.51e-01 120 chrX:10745148-10745268 3.08e-01 120 chr2L:8415618-8415738 2.76e-01 120 chr2R:24669168-24669288 3.38e-01 120 chr2R:21522376-21522496 1.52e-02 70_[+4(4.23e-05)]_42 chr2R:12174248-12174368 6.02e-01 120 chr2R:8122917-8123037 2.34e-02 21_[+3(1.52e-05)]_91 chr3R:30004699-30004819 9.54e-01 120 chrX:13755442-13755562 2.81e-03 6_[+4(8.71e-06)]_106 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1.75e-01 120 chr2R:14621552-14621672 2.38e-02 120 chr2R:18652923-18653043 9.07e-04 105_[+5(6.89e-06)]_7 chr2R:22270676-22270796 2.15e-02 73_[+1(4.20e-05)]_39 chr2R:17698981-17699101 7.37e-01 120 chr2L:18881335-18881455 1.77e-02 120 chr3R:14904127-14904247 4.07e-01 120 chr3R:22421044-22421164 3.59e-04 6_[+2(1.10e-05)]_106 chr2R:19275502-19275622 6.40e-02 57_[+1(5.99e-05)]_55 chr3R:29556180-29556300 1.48e-02 25_[+1(5.99e-05)]_59_[+1(4.20e-05)]_\ 20 chr3L:3374180-3374300 2.45e-03 120 chr3L:699470-699590 9.90e-01 120 chr2R:8649519-8649639 2.40e-03 33_[+1(4.20e-05)]_2_[+1(4.20e-05)]_\ 69 chr2R:20106530-20106650 1.30e-05 54_[+3(6.69e-06)]_21_[+1(1.17e-05)]_\ 29 chr2L:11447788-11447908 5.46e-01 120 chr2L:14355167-14355287 1.22e-01 120 chr3R:26006045-26006165 1.15e-04 42_[+5(6.89e-06)]_70 chr3R:5856349-5856469 9.53e-01 120 chr3R:9510278-9510398 9.67e-01 120 chr2R:10810915-10811035 2.36e-02 120 chr3R:12425994-12426114 1.00e+00 120 chr2L:14234176-14234296 4.53e-01 120 chr3L:5932589-5932709 7.97e-01 120 chr3L:21049789-21049909 3.08e-01 120 chr3R:26036929-26037049 2.03e-01 120 chr3L:21484027-21484147 4.23e-01 120 chr3R:9986086-9986206 9.49e-01 120 chr3R:24870762-24870882 7.88e-05 39_[+1(2.68e-05)]_55_[+2(1.10e-05)]_\ 10 chr3L:9899072-9899192 9.84e-01 120 chr3R:21856257-21856377 4.52e-03 49_[+2(1.10e-05)]_63 chr3R:17540094-17540214 9.68e-01 120 chrX:20257235-20257355 5.72e-01 120 chr2R:9971187-9971307 6.23e-01 120 chr3L:3090657-3090777 4.83e-02 36_[+1(2.68e-05)]_76 chr3R:10350647-10350767 3.20e-02 [+3(9.35e-05)]_112 chr3R:13030717-13030837 1.00e+00 120 chr2L:6079108-6079228 4.52e-03 81_[+1(1.17e-05)]_31 chr3R:13683734-13683854 8.02e-01 120 chrX:13385102-13385222 8.67e-01 120 chr3R:20830387-20830507 1.55e-04 3_[+2(3.49e-05)]_36_[+4(1.74e-05)]_\ 65 chr3R:23295448-23295568 1.01e-03 89_[+1(1.17e-05)]_23 chr3R:5613109-5613229 3.64e-01 120 chr2R:14981158-14981278 2.35e-01 120 chr2L:4892072-4892192 2.25e-02 120 chr3R:21065103-21065223 3.40e-03 96_[+1(1.17e-05)]_16 chr2L:7220070-7220190 9.97e-01 120 chr2R:9398672-9398792 5.16e-02 120 chr3L:7356631-7356751 2.60e-02 120 chr3R:25265753-25265873 9.63e-01 120 chr3L:19062903-19063023 2.17e-01 120 chrX:4105993-4106113 1.67e-02 27_[+2(1.10e-05)]_85 chr2L:14490668-14490788 1.54e-03 82_[+4(8.52e-05)]_19_[+3(4.55e-05)]_\ 3 chr2R:23580832-23580952 1.47e-02 51_[+1(9.76e-05)]_61 chr2L:2753113-2753233 2.47e-03 39_[+1(2.68e-05)]_1_[+1(9.76e-05)]_\ 64 chr3R:16748707-16748827 1.53e-01 120 chr2R:14618581-14618701 6.66e-01 120 chr2R:22688913-22689033 3.30e-01 120 chr3R:23118072-23118192 1.00e+00 120 chr3R:15973252-15973372 3.39e-02 120 chrX:2732209-2732329 4.46e-01 120 chr3L:16581566-16581686 8.73e-01 120 chr3L:17644837-17644957 8.57e-01 120 chr3R:5474663-5474783 7.83e-01 120 chr2R:13583927-13584047 9.15e-01 120 chr3R:31609739-31609859 6.44e-02 120 chr2R:19451607-19451727 5.16e-04 1_[+1(6.89e-05)]_21_[+2(1.95e-05)]_\ 82 chr2L:19127130-19127250 6.14e-02 80_[+1(2.68e-05)]_32 chrX:16422655-16422775 3.68e-03 78_[+2(1.10e-05)]_34 chr2L:21215141-21215261 2.83e-02 75_[+4(8.71e-06)]_37 chr2L:7281594-7281714 3.51e-01 120 chr2L:5009753-5009873 6.68e-01 120 chr3R:24349059-24349179 8.73e-01 120 chr2L:11988024-11988144 5.61e-01 120 chr3L:13228532-13228652 8.35e-01 120 chr3R:24294945-24295065 4.21e-02 5_[+2(1.95e-05)]_107 chr2L:1420416-1420536 2.15e-02 120 chr2L:18443292-18443412 5.61e-01 120 chr2L:3457220-3457340 7.74e-01 120 chr2R:10541684-10541804 2.62e-01 120 chr3R:7474951-7475071 2.31e-02 112_[+4(1.74e-05)] chr3R:27636425-27636545 8.92e-01 120 chr2R:6501796-6501916 1.53e-03 110_[+3(6.69e-06)]_2 chrX:11339653-11339773 9.50e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************