******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/TFAM.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:4710-4830 1.0000 120 chrM:5966-6086 1.0000 120 chrM:12764-12884 1.0000 120 chrM:11972-12092 1.0000 120 chrM:13256-13376 1.0000 120 chrM:11255-11375 1.0000 120 chrM:7141-7261 1.0000 120 chrM:12195-12315 1.0000 120 chrM:14126-14246 1.0000 120 chrM:4951-5071 1.0000 120 chrM:2596-2716 1.0000 120 chrM:7459-7579 1.0000 120 chrM:2800-2920 1.0000 120 chrM:3526-3646 1.0000 120 chrM:5367-5487 1.0000 120 chrM:10697-10817 1.0000 120 chrM:5166-5286 1.0000 120 chrM:14356-14476 1.0000 120 chrM:1956-2076 1.0000 120 chrM:8650-8770 1.0000 120 chrM:1757-1877 1.0000 120 chrM:10900-11020 1.0000 120 chr2R:15247894-15248014 1.0000 120 chr2R:14077579-14077699 1.0000 120 chr3R:29831064-29831184 1.0000 120 chr3R:6406440-6406560 1.0000 120 chr3R:15983680-15983800 1.0000 120 chr3R:18311687-18311807 1.0000 120 chr3L:16769988-16770108 1.0000 120 chr3R:14670981-14671101 1.0000 120 chr2L:5256568-5256688 1.0000 120 chr3R:31551093-31551213 1.0000 120 chr3R:9870081-9870201 1.0000 120 chr3L:3543805-3543925 1.0000 120 chr2R:24593737-24593857 1.0000 120 chr3R:22589551-22589671 1.0000 120 chr2R:13560901-13561021 1.0000 120 chr3L:18403378-18403498 1.0000 120 chr3R:8212744-8212864 1.0000 120 chr3L:21962056-21962176 1.0000 120 chr3L:21464426-21464546 1.0000 120 chr3L:6216105-6216225 1.0000 120 chr3L:13189415-13189535 1.0000 120 chr3L:1166395-1166515 1.0000 120 chr2R:6605976-6606096 1.0000 120 chr2R:11632504-11632624 1.0000 120 chrX:11660613-11660733 1.0000 120 chr3R:13999709-13999829 1.0000 120 chr3L:5987777-5987897 1.0000 120 chr3R:20276124-20276244 1.0000 120 chr3L:3083634-3083754 1.0000 120 chr2L:11206985-11207105 1.0000 120 chr3R:31395334-31395454 1.0000 120 chr2L:8860909-8861029 1.0000 120 chr3L:14956411-14956531 1.0000 120 chr2L:4838599-4838719 1.0000 120 chr3R:23922997-23923117 1.0000 120 chr3R:23783201-23783321 1.0000 120 chr2R:18608991-18609111 1.0000 120 chr3R:14469889-14470009 1.0000 120 chrX:16644925-16645045 1.0000 120 chr3L:5187652-5187772 1.0000 120 chr2L:18899410-18899530 1.0000 120 chr2R:19357526-19357646 1.0000 120 chr2R:22511635-22511755 1.0000 120 chr3R:6667403-6667523 1.0000 120 chr2R:7773208-7773328 1.0000 120 chr3R:25453207-25453327 1.0000 120 chr2R:11742804-11742924 1.0000 120 chrX:5084912-5085032 1.0000 120 chr3L:12755086-12755206 1.0000 120 chr3R:19627894-19628014 1.0000 120 chr2R:13966202-13966322 1.0000 120 chr3L:20471880-20472000 1.0000 120 chr3L:7979100-7979220 1.0000 120 chr3R:27137954-27138074 1.0000 120 chr3L:13865628-13865748 1.0000 120 chr2L:14462765-14462885 1.0000 120 chr2R:22510878-22510998 1.0000 120 chr3L:2798570-2798690 1.0000 120 chr3R:10643290-10643410 1.0000 120 chrX:11427450-11427570 1.0000 120 chr3R:11392939-11393059 1.0000 120 chr3R:20285838-20285958 1.0000 120 chr2R:13584188-13584308 1.0000 120 chr3L:9856557-9856677 1.0000 120 chr2R:25085543-25085663 1.0000 120 chr3R:5015350-5015470 1.0000 120 chr2L:5997762-5997882 1.0000 120 chr3L:9034404-9034524 1.0000 120 chr2L:19434411-19434531 1.0000 120 chr3L:7151983-7152103 1.0000 120 chr3R:10684410-10684530 1.0000 120 chr3R:13794103-13794223 1.0000 120 chr3L:13235608-13235728 1.0000 120 chr3L:12062973-12063093 1.0000 120 chr2R:21607964-21608084 1.0000 120 chr2R:20997825-20997945 1.0000 120 chr2R:17457362-17457482 1.0000 120 chr2R:20837997-20838117 1.0000 120 chr3L:5974710-5974830 1.0000 120 chr2L:8852333-8852453 1.0000 120 chr2L:10467013-10467133 1.0000 120 chr3L:14758189-14758309 1.0000 120 chr3L:5447279-5447399 1.0000 120 chr2R:9183636-9183756 1.0000 120 chr2R:15128152-15128272 1.0000 120 chr2L:11453079-11453199 1.0000 120 chr2R:6512369-6512489 1.0000 120 chr2R:20313966-20314086 1.0000 120 chr3R:19465434-19465554 1.0000 120 chr2R:21093229-21093349 1.0000 120 chr2L:3628904-3629024 1.0000 120 chr3R:23723792-23723912 1.0000 120 chr3R:10665006-10665126 1.0000 120 chr2L:3827781-3827901 1.0000 120 chr3L:21479818-21479938 1.0000 120 chr3R:16331783-16331903 1.0000 120 chr3L:3862557-3862677 1.0000 120 chr2L:12371901-12372021 1.0000 120 chr3L:7988984-7989104 1.0000 120 chr3L:13957384-13957504 1.0000 120 chr3R:16337212-16337332 1.0000 120 chr2L:12535865-12535985 1.0000 120 chr2R:19997546-19997666 1.0000 120 chrX:3022571-3022691 1.0000 120 chrX:17829085-17829205 1.0000 120 chr2R:19857776-19857896 1.0000 120 chr2R:16584033-16584153 1.0000 120 chr2R:15136864-15136984 1.0000 120 chr2R:14488985-14489105 1.0000 120 chr2L:9633982-9634102 1.0000 120 chr2R:13998466-13998586 1.0000 120 chr3R:19464231-19464351 1.0000 120 chr2L:17380022-17380142 1.0000 120 chr3L:5869745-5869865 1.0000 120 chr3L:6124761-6124881 1.0000 120 chr2L:18693967-18694087 1.0000 120 chr2L:9133302-9133422 1.0000 120 chr2L:3437162-3437282 1.0000 120 chr2R:7530729-7530849 1.0000 120 chr3L:9397239-9397359 1.0000 120 chr2L:2182857-2182977 1.0000 120 chr3R:31252680-31252800 1.0000 120 chr3R:22590809-22590929 1.0000 120 chr3R:15651888-15652008 1.0000 120 chr3L:15566562-15566682 1.0000 120 chr2R:18695174-18695294 1.0000 120 chr2L:18148975-18149095 1.0000 120 chr3R:4813441-4813561 1.0000 120 chr3R:11269150-11269270 1.0000 120 chr3R:20292689-20292809 1.0000 120 chrX:14483891-14484011 1.0000 120 chr2L:8320200-8320320 1.0000 120 chr2L:3588452-3588572 1.0000 120 chr3R:31325209-31325329 1.0000 120 chr3R:10213621-10213741 1.0000 120 chr3R:9054737-9054857 1.0000 120 chr3L:2475983-2476103 1.0000 120 chr3L:9045361-9045481 1.0000 120 chr3R:21829034-21829154 1.0000 120 chr2L:522060-522180 1.0000 120 chr2R:17422102-17422222 1.0000 120 chr3L:2537302-2537422 1.0000 120 chr2R:16586051-16586171 1.0000 120 chrX:12202356-12202476 1.0000 120 chr2R:10210833-10210953 1.0000 120 chrX:6702123-6702243 1.0000 120 chr3R:4886283-4886403 1.0000 120 chr3R:18929167-18929287 1.0000 120 chr3L:17485533-17485653 1.0000 120 chr2R:10276380-10276500 1.0000 120 chr3L:3638720-3638840 1.0000 120 chr2R:6984521-6984641 1.0000 120 chr3L:10656926-10657046 1.0000 120 chr3L:1579435-1579555 1.0000 120 chr2L:8164383-8164503 1.0000 120 chrX:17713880-17714000 1.0000 120 chr2L:1433835-1433955 1.0000 120 chr2L:20780887-20781007 1.0000 120 chr3R:27246443-27246563 1.0000 120 chr3R:4663241-4663361 1.0000 120 chr3R:14591199-14591319 1.0000 120 chr3L:6071568-6071688 1.0000 120 chrX:14612434-14612554 1.0000 120 chr3R:5212450-5212570 1.0000 120 chr3L:1323197-1323317 1.0000 120 chr3R:23657964-23658084 1.0000 120 chr2R:10225819-10225939 1.0000 120 chr2L:20917644-20917764 1.0000 120 chr3L:14297595-14297715 1.0000 120 chr2R:24062377-24062497 1.0000 120 chr3L:10769777-10769897 1.0000 120 chr2L:430966-431086 1.0000 120 chr3R:10269190-10269310 1.0000 120 chr2R:22213885-22214005 1.0000 120 chr2R:12540795-12540915 1.0000 120 chr2L:19870092-19870212 1.0000 120 chr3R:23335750-23335870 1.0000 120 chr3L:4611474-4611594 1.0000 120 chr2L:1648757-1648877 1.0000 120 chr3R:8926049-8926169 1.0000 120 chr3R:31061475-31061595 1.0000 120 chr3L:10519081-10519201 1.0000 120 chr3L:1086380-1086500 1.0000 120 chrX:11528470-11528590 1.0000 120 chr3R:13686708-13686828 1.0000 120 chr2L:14047344-14047464 1.0000 120 chr3R:9379124-9379244 1.0000 120 chr3R:24893498-24893618 1.0000 120 chr2L:19196887-19197007 1.0000 120 chr2R:19256058-19256178 1.0000 120 chr2R:19714971-19715091 1.0000 120 chrX:1877254-1877374 1.0000 120 chr2L:7123815-7123935 1.0000 120 chr3R:14478780-14478900 1.0000 120 chr2L:18653440-18653560 1.0000 120 chrX:15671258-15671378 1.0000 120 chrX:17123878-17123998 1.0000 120 chr3R:13428435-13428555 1.0000 120 chr3R:26963946-26964066 1.0000 120 chr2R:12543798-12543918 1.0000 120 chr3L:12077444-12077564 1.0000 120 chr3R:29204733-29204853 1.0000 120 chr3L:11415524-11415644 1.0000 120 chr3R:21862162-21862282 1.0000 120 chr3L:19906893-19907013 1.0000 120 chrX:6533199-6533319 1.0000 120 chr2L:17382495-17382615 1.0000 120 chrX:16384107-16384227 1.0000 120 chr3R:6936300-6936420 1.0000 120 chr3L:11422424-11422544 1.0000 120 chr2R:23589261-23589381 1.0000 120 chr3L:14661943-14662063 1.0000 120 chr2R:7754072-7754192 1.0000 120 chr2L:7135261-7135381 1.0000 120 chr2R:21704694-21704814 1.0000 120 chr3R:20550683-20550803 1.0000 120 chr3R:17604369-17604489 1.0000 120 chr3L:725942-726062 1.0000 120 chr3R:23940638-23940758 1.0000 120 chrX:15021206-15021326 1.0000 120 chr3R:26886409-26886529 1.0000 120 chr3L:11416882-11417002 1.0000 120 chr3R:21627911-21628031 1.0000 120 chr2R:22561112-22561232 1.0000 120 chr2R:18302838-18302958 1.0000 120 chr3R:14391387-14391507 1.0000 120 chr2L:5907528-5907648 1.0000 120 chrX:14627512-14627632 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_TFAM/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/TFAM.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.316 C 0.186 G 0.174 T 0.324 Background letter frequencies (from file dataset with add-one prior applied): A 0.316 C 0.186 G 0.174 T 0.324 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RGCAAACA MEME-1 width = 8 sites = 61 llr = 482 E-value = 2.7e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGCAAACA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 32:a8a:a pos.-specific C 21a:2:8: probability G 47:::::: matrix T 1:::::2: bits 2.5 * 2.3 * 2.0 * 1.8 * * * Relative 1.5 ** *** Entropy 1.3 ** *** (11.4 bits) 1.0 ******* 0.8 ******* 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCAAACA consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCAAACA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:11416882-11417002 3 1.04e-05 TA GGCAAACA TAGCATAAAA chr3R:23657964-23658084 44 1.04e-05 cgaccgcaaa ggcaaaca caacgcaatc chr2R:10276380-10276500 18 1.04e-05 ttgtgtAAAA GGCAAACA AACAATAAGT chr3R:19464231-19464351 57 1.04e-05 AAAAATGGCA GGCAAACA CAAAAACTCA chr2R:14488985-14489105 92 1.04e-05 GTGCGCGCTG GGCAAACA AAATCCACGC chr3R:16331783-16331903 27 1.04e-05 CAAATAGGTG GGCAAACA AAGTGCGACA chr2L:3628904-3629024 101 1.04e-05 CGCAGCTAAT GGCAAACA AATTACCGCG chr3R:10643290-10643410 51 1.04e-05 AGAGCCGTGG GGCAAACA CGAAAATATT chr3R:29831064-29831184 92 1.04e-05 GTTAGAAAGC GGCAAACA TGCAAAATTT chr3L:19906893-19907013 110 1.66e-05 ATATTAAAAA GGCACACA GAC chr2R:13584188-13584308 73 1.66e-05 caCGCTCGTT GGCACACA CATGTGCAAT chr3R:25453207-25453327 41 2.78e-05 AACAGGTGGT CGCAAACA GAGCTAAATA chr2R:24593737-24593857 55 2.78e-05 ATTTACCCCC CGCAAACA GTGGAAAATC chr2L:1648757-1648877 21 4.67e-05 AAAATACACA AGCAAACA AACAAATATA chr3L:2537302-2537422 49 4.67e-05 GCTGGAAAAG AGCAAACA CAAGCGAAGA chr3L:13235608-13235728 47 4.67e-05 TTTCGAGTca agcaaaca gaaatcaaca chr3R:27137954-27138074 57 4.67e-05 aatcaccaca agcaaaca caaacacaaa chr2R:7773208-7773328 92 4.67e-05 GCACAAAGTA AGCAAACA GCAGTCAGTT chr2R:14077579-14077699 100 4.67e-05 CAACTCGTAC AGcaaaca aacaaacaaa chr2R:7754072-7754192 69 5.79e-05 ATTGTTTAAA GCCAAACA AAGCGTAGCA chr3R:11392939-11393059 18 5.79e-05 AAATCGCTCG GCCAAACA GGAAGTGGTT chr3L:20471880-20472000 59 5.79e-05 TGTTTAGTAG GCCAAACA CACCGATATA chr2R:6605976-6606096 47 5.79e-05 ATTTGTTCCC GCCAAACA AGCGACctct chr3R:9870081-9870201 98 5.79e-05 TCTCCGAGCA GCCAAACA ATGAAAACTG chr2L:430966-431086 12 6.45e-05 CTCACACGGA CGCACACA CTATGTAGTT chr3L:10656926-10657046 73 6.45e-05 CTGTTTATTA CGCACACA CAATGGGCGC chr2R:16584033-16584153 62 6.45e-05 CGCTCTCTGT CGCACACA AAATCAAACA chr2L:5997762-5997882 108 6.45e-05 GTTGTTGTGA CGCACACA CACTC chr2R:22510878-22510998 9 9.46e-05 AAAAGTAA AGCACACA TGTTCCGGCC chr3L:21464426-21464546 67 9.46e-05 ATATTTTCAG GACAAACA TTTGCGTGTT chr3L:1086380-1086500 85 1.13e-04 CTAGACACAA GGCAAATA GCTGACGGCG chr2R:18695174-18695294 20 1.13e-04 TTTCGCTATG GGCAAATA TTTAAGCTGC chr3L:14956411-14956531 79 1.13e-04 GCACTTGTAC GGCAAATA TTGACAAAGG chr3R:22589551-22589671 102 1.13e-04 AACAAAATAA GGCAAATA ATTTGTCTTT chr3R:15983680-15983800 14 1.13e-04 TATCAGCAAT GGCAAATA CAATTGTTTG chr2R:19714971-19715091 13 1.32e-04 CAATTCAAAA TGCAAACA AAGTCTCGTC chr2L:17380022-17380142 56 1.32e-04 ATATTTACAA TGCAAACA ACAAATATAC chr2L:19434411-19434531 101 1.32e-04 CAGTCAGGCA TGCAAACA CTCCATAGGT chr3L:13189415-13189535 42 1.32e-04 TGTGTTTAGC TGCAAACA TATTGTATAA chr3L:21962056-21962176 1 1.51e-04 . CCCAAACA ACACTGTGTT chr3L:9034404-9034524 42 1.71e-04 ATTTTATATG ACCAAACA TGTAGTCTGT chr3R:19627894-19628014 6 1.71e-04 GTTAA ACCAAACA TTATCATCCT chr3L:17485533-17485653 108 1.82e-04 CTGAAACATT GACACACA CACAT chr2R:9183636-9183756 89 1.82e-04 CAAACGTAAA GACACACA AACAACACTG chr3R:20550683-20550803 46 2.13e-04 ACCTTTGGTA CACAAACA CCAACGCACA chr2R:13560901-13561021 41 2.13e-04 CCCCCAAAAT CACAAACA AATTTTATGG chr2L:5907528-5907648 65 2.67e-04 AGTTGGAGTA AACAAACA AGTGCGCAAT chr3L:2475983-2476103 111 2.67e-04 TTATAAACAT CGCAAATA TT chr3L:15566562-15566682 88 2.67e-04 AATGCCacta aacaaaca cacaaaaata chr2R:21607964-21608084 93 2.67e-04 GCAGTGTTCA AACAAACA GTGTTTTCTC chr2R:13966202-13966322 43 2.67e-04 GGGTCGGACT AACAAACA ACCCCGAGCT chr2L:18148975-18149095 47 3.00e-04 TCCAGGGAAA AGCAAATA TGTACATACA chr3L:1166395-1166515 88 3.00e-04 GTATTCGTTG AGCAAATA TTGTAAATGC chr3R:14670981-14671101 19 3.00e-04 TACCCGAAAA AGCAAATA TTTGTGGCCT chrX:15021206-15021326 113 3.12e-04 TTTCGCTCAG TGCACACA chrX:14483891-14484011 81 3.31e-04 CTTTGACATT ACCACACA GTTTCAACCA chr3R:5015350-5015470 110 3.56e-04 GCCGATAAGC GGCGAACA GCC chr2R:21704694-21704814 92 3.99e-04 TCGTTATATG AACACACA GCACGCCAGA chr2L:5256568-5256688 95 3.99e-04 AATGTCTCAA CGCACATA TTGACATTGT chr3L:9397239-9397359 34 4.73e-04 CACGATAGTC GACAAATA TTTGATCGTG chrM:10900-11020 8 4.73e-04 CCTTGAG GACAAATA TCATTTTGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCAAACA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:11416882-11417002 1e-05 2_[+1]_110 chr3R:23657964-23658084 1e-05 43_[+1]_69 chr2R:10276380-10276500 1e-05 17_[+1]_95 chr3R:19464231-19464351 1e-05 56_[+1]_56 chr2R:14488985-14489105 1e-05 91_[+1]_21 chr3R:16331783-16331903 1e-05 26_[+1]_86 chr2L:3628904-3629024 1e-05 100_[+1]_12 chr3R:10643290-10643410 1e-05 50_[+1]_62 chr3R:29831064-29831184 1e-05 91_[+1]_21 chr3L:19906893-19907013 1.7e-05 109_[+1]_3 chr2R:13584188-13584308 1.7e-05 72_[+1]_40 chr3R:25453207-25453327 2.8e-05 40_[+1]_72 chr2R:24593737-24593857 2.8e-05 54_[+1]_58 chr2L:1648757-1648877 4.7e-05 20_[+1]_92 chr3L:2537302-2537422 4.7e-05 48_[+1]_64 chr3L:13235608-13235728 4.7e-05 46_[+1]_66 chr3R:27137954-27138074 4.7e-05 56_[+1]_56 chr2R:7773208-7773328 4.7e-05 91_[+1]_21 chr2R:14077579-14077699 4.7e-05 99_[+1]_13 chr2R:7754072-7754192 5.8e-05 68_[+1]_44 chr3R:11392939-11393059 5.8e-05 17_[+1]_95 chr3L:20471880-20472000 5.8e-05 58_[+1]_54 chr2R:6605976-6606096 5.8e-05 46_[+1]_66 chr3R:9870081-9870201 5.8e-05 97_[+1]_15 chr2L:430966-431086 6.4e-05 11_[+1]_101 chr3L:10656926-10657046 6.4e-05 72_[+1]_40 chr2R:16584033-16584153 6.4e-05 61_[+1]_51 chr2L:5997762-5997882 6.4e-05 107_[+1]_5 chr2R:22510878-22510998 9.5e-05 8_[+1]_104 chr3L:21464426-21464546 9.5e-05 66_[+1]_46 chr3L:1086380-1086500 0.00011 84_[+1]_28 chr2R:18695174-18695294 0.00011 19_[+1]_93 chr3L:14956411-14956531 0.00011 78_[+1]_34 chr3R:22589551-22589671 0.00011 101_[+1]_11 chr3R:15983680-15983800 0.00011 13_[+1]_99 chr2R:19714971-19715091 0.00013 12_[+1]_100 chr2L:17380022-17380142 0.00013 55_[+1]_57 chr2L:19434411-19434531 0.00013 100_[+1]_12 chr3L:13189415-13189535 0.00013 41_[+1]_71 chr3L:21962056-21962176 0.00015 [+1]_112 chr3L:9034404-9034524 0.00017 41_[+1]_71 chr3R:19627894-19628014 0.00017 5_[+1]_107 chr3L:17485533-17485653 0.00018 107_[+1]_5 chr2R:9183636-9183756 0.00018 88_[+1]_24 chr3R:20550683-20550803 0.00021 45_[+1]_67 chr2R:13560901-13561021 0.00021 40_[+1]_72 chr2L:5907528-5907648 0.00027 64_[+1]_48 chr3L:2475983-2476103 0.00027 110_[+1]_2 chr3L:15566562-15566682 0.00027 87_[+1]_25 chr2R:21607964-21608084 0.00027 92_[+1]_20 chr2R:13966202-13966322 0.00027 42_[+1]_70 chr2L:18148975-18149095 0.0003 46_[+1]_66 chr3L:1166395-1166515 0.0003 87_[+1]_25 chr3R:14670981-14671101 0.0003 18_[+1]_94 chrX:15021206-15021326 0.00031 112_[+1] chrX:14483891-14484011 0.00033 80_[+1]_32 chr3R:5015350-5015470 0.00036 109_[+1]_3 chr2R:21704694-21704814 0.0004 91_[+1]_21 chr2L:5256568-5256688 0.0004 94_[+1]_18 chr3L:9397239-9397359 0.00047 33_[+1]_79 chrM:10900-11020 0.00047 7_[+1]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCAAACA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGCAAACA width=8 seqs=61 chr3L:11416882-11417002 ( 3) GGCAAACA 1 chr3R:23657964-23658084 ( 44) GGCAAACA 1 chr2R:10276380-10276500 ( 18) GGCAAACA 1 chr3R:19464231-19464351 ( 57) GGCAAACA 1 chr2R:14488985-14489105 ( 92) GGCAAACA 1 chr3R:16331783-16331903 ( 27) GGCAAACA 1 chr2L:3628904-3629024 ( 101) GGCAAACA 1 chr3R:10643290-10643410 ( 51) GGCAAACA 1 chr3R:29831064-29831184 ( 92) GGCAAACA 1 chr3L:19906893-19907013 ( 110) GGCACACA 1 chr2R:13584188-13584308 ( 73) GGCACACA 1 chr3R:25453207-25453327 ( 41) CGCAAACA 1 chr2R:24593737-24593857 ( 55) CGCAAACA 1 chr2L:1648757-1648877 ( 21) AGCAAACA 1 chr3L:2537302-2537422 ( 49) AGCAAACA 1 chr3L:13235608-13235728 ( 47) AGCAAACA 1 chr3R:27137954-27138074 ( 57) AGCAAACA 1 chr2R:7773208-7773328 ( 92) AGCAAACA 1 chr2R:14077579-14077699 ( 100) AGCAAACA 1 chr2R:7754072-7754192 ( 69) GCCAAACA 1 chr3R:11392939-11393059 ( 18) GCCAAACA 1 chr3L:20471880-20472000 ( 59) GCCAAACA 1 chr2R:6605976-6606096 ( 47) GCCAAACA 1 chr3R:9870081-9870201 ( 98) GCCAAACA 1 chr2L:430966-431086 ( 12) CGCACACA 1 chr3L:10656926-10657046 ( 73) CGCACACA 1 chr2R:16584033-16584153 ( 62) CGCACACA 1 chr2L:5997762-5997882 ( 108) CGCACACA 1 chr2R:22510878-22510998 ( 9) AGCACACA 1 chr3L:21464426-21464546 ( 67) GACAAACA 1 chr3L:1086380-1086500 ( 85) GGCAAATA 1 chr2R:18695174-18695294 ( 20) GGCAAATA 1 chr3L:14956411-14956531 ( 79) GGCAAATA 1 chr3R:22589551-22589671 ( 102) GGCAAATA 1 chr3R:15983680-15983800 ( 14) GGCAAATA 1 chr2R:19714971-19715091 ( 13) TGCAAACA 1 chr2L:17380022-17380142 ( 56) TGCAAACA 1 chr2L:19434411-19434531 ( 101) TGCAAACA 1 chr3L:13189415-13189535 ( 42) TGCAAACA 1 chr3L:21962056-21962176 ( 1) CCCAAACA 1 chr3L:9034404-9034524 ( 42) ACCAAACA 1 chr3R:19627894-19628014 ( 6) ACCAAACA 1 chr3L:17485533-17485653 ( 108) GACACACA 1 chr2R:9183636-9183756 ( 89) GACACACA 1 chr3R:20550683-20550803 ( 46) CACAAACA 1 chr2R:13560901-13561021 ( 41) CACAAACA 1 chr2L:5907528-5907648 ( 65) AACAAACA 1 chr3L:2475983-2476103 ( 111) CGCAAATA 1 chr3L:15566562-15566682 ( 88) AACAAACA 1 chr2R:21607964-21608084 ( 93) AACAAACA 1 chr2R:13966202-13966322 ( 43) AACAAACA 1 chr2L:18148975-18149095 ( 47) AGCAAATA 1 chr3L:1166395-1166515 ( 88) AGCAAATA 1 chr3R:14670981-14671101 ( 19) AGCAAATA 1 chrX:15021206-15021326 ( 113) TGCACACA 1 chrX:14483891-14484011 ( 81) ACCACACA 1 chr3R:5015350-5015470 ( 110) GGCGAACA 1 chr2R:21704694-21704814 ( 92) AACACACA 1 chr2L:5256568-5256688 ( 95) CGCACATA 1 chr3L:9397239-9397359 ( 34) GACAAATA 1 chrM:10900-11020 ( 8) GACAAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCAAACA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1408 E= 2.7e-006 -10 -4 134 -198 -68 -33 191 -1257 -1257 243 -1257 -1257 164 -1257 -341 -1257 132 20 -1257 -1257 166 -1257 -1257 -1257 -1257 211 -1257 -72 166 -1257 -1257 -1257 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCAAACA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 2.7e-006 0.295082 0.180328 0.442623 0.081967 0.196721 0.147541 0.655738 0.000000 0.000000 1.000000 0.000000 0.000000 0.983607 0.000000 0.016393 0.000000 0.786885 0.213115 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.803279 0.000000 0.196721 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCAAACA MEME-1 regular expression -------------------------------------------------------------------------------- [GA]GCA[AC]ACA -------------------------------------------------------------------------------- Time 7.48 secs. ******************************************************************************** ******************************************************************************** MOTIF GCMGCTGY MEME-2 width = 8 sites = 34 llr = 301 E-value = 9.9e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCMGCTGY MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::3::::: pos.-specific C :75:92:6 probability G a21a::a: matrix T :11:18:4 bits 2.5 * * 2.3 * * * 2.0 * * * 1.8 * ** * Relative 1.5 * ** * Entropy 1.3 ** ** ** (12.8 bits) 1.0 ** ***** 0.8 ** ***** 0.5 ** ***** 0.3 ******** 0.0 -------- Multilevel GCCGCTGC consensus GA C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCTGY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12543798-12543918 103 2.04e-06 TACTATTTTG GCCGCTGC TGTGCATACA chrX:17123878-17123998 28 2.04e-06 TCAGTGGCAT GCCGCTGC TGGATTTTCG chr2L:5997762-5997882 70 3.22e-06 ACACAAGGAA GCCGCCGC GACAGAGCTT chr2L:18653440-18653560 71 5.13e-06 TACAAGACAA GGCGCTGC ACTTAAAAAC chr2R:10276380-10276500 93 5.13e-06 CAAAACGCTC GGCGCTGC CCAAATAAAT chr3R:13686708-13686828 24 1.22e-05 TCTGGCCCTC GCCGCTGT TTGTTTTCTT chr3L:5447279-5447399 6 1.22e-05 CATTC GCCGCTGT GTGGCAGATA chrX:11660613-11660733 107 1.22e-05 GTCTGCATCA GCAGCTGC GACAGC chrM:5367-5487 80 1.22e-05 TGGTTTTGAA GCAGCTGC ATGATATTGA chr3L:5869745-5869865 66 2.28e-05 GCGTTTCGTA GCTGCTGC GACTTCACAC chr2R:13584188-13584308 99 2.28e-05 ATGCCGAAGG GCAGCCGC AACGCAAGTC chrX:5084912-5085032 41 2.28e-05 AACACGAAAT GCCGCCGT TTTATAGCCG chr2R:11632504-11632624 54 2.28e-05 CGAACCGTTC GCTGCTGC TGACGGCAAC chr3R:21862162-21862282 7 3.40e-05 ACAATT GTCGCTGC CACCAATGCA chr3R:10684410-10684530 74 3.40e-05 TATTATTAAT GGAGCTGC GTGCATAGAA chr2R:22511635-22511755 6 3.40e-05 ACAGA GGAGCTGC AACAGCTGCC chr2L:20780887-20781007 15 4.56e-05 CCTATCTTCT GCCGTTGC TGTTGAACTT chr2R:22510878-22510998 78 4.56e-05 TGCGTTTATT GCCGTTGC TGGGCAAATA chr2R:6605976-6606096 7 4.56e-05 CTGCCC GCAGCTGT GATTTGGTGT chr3L:10519081-10519201 13 5.08e-05 TCCCTTTCTG GCGGCTGT TGCCGTCTCT chr3R:4886283-4886403 105 5.08e-05 CTGTGTAACT GCGGCTGT TTGAATGA chr3R:20285838-20285958 98 5.08e-05 ACtgtgttgt gcggctgt gagagtgtgt chr2R:17422102-17422222 35 5.99e-05 TAATTGTTTT GGTGCTGC GCTTGTTTGT chr2L:8852333-8852453 64 5.99e-05 CGTCATCGGC GTCGCCGC CTGTCGTCTG chr3L:7979100-7979220 19 5.99e-05 TGAAACAAAC GTCGCCGC GTGTGATCGA chr3R:10665006-10665126 77 7.46e-05 CAAGCGGTCG GCGGCCGT ACCTCACTGA chr3R:26963946-26964066 104 9.77e-05 GACCACGACT GTAGCTGC CTGCTATGT chr3L:21479818-21479938 70 9.77e-05 ATGCAGCGAT GGCGTTGC CTACAGTTCG chrM:2596-2716 21 9.77e-05 TTTATCTATA GGAGCTGT ATTTGCTATT chr3L:19906893-19907013 88 1.13e-04 AAGACAACCA GCAGTTGC ACAAATATTA chr2L:430966-431086 96 1.13e-04 CATTTTCGTA GCCGTTGT TGTTGTTGCC chr2R:18695174-18695294 33 1.13e-04 AAATATTTAA GCTGCCGT CTGAGCGTTG chr3R:31551093-31551213 82 1.13e-04 tgttGTCTTA GCTGCCGT AAGCCGCTTT chr3R:23783201-23783321 76 1.64e-04 GTTTGCCTCT GCCTCTGC CCTTTTTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCTGY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12543798-12543918 2e-06 102_[+2]_10 chrX:17123878-17123998 2e-06 27_[+2]_85 chr2L:5997762-5997882 3.2e-06 69_[+2]_43 chr2L:18653440-18653560 5.1e-06 70_[+2]_42 chr2R:10276380-10276500 5.1e-06 92_[+2]_20 chr3R:13686708-13686828 1.2e-05 23_[+2]_89 chr3L:5447279-5447399 1.2e-05 5_[+2]_107 chrX:11660613-11660733 1.2e-05 106_[+2]_6 chrM:5367-5487 1.2e-05 79_[+2]_33 chr3L:5869745-5869865 2.3e-05 65_[+2]_47 chr2R:13584188-13584308 2.3e-05 98_[+2]_14 chrX:5084912-5085032 2.3e-05 40_[+2]_72 chr2R:11632504-11632624 2.3e-05 53_[+2]_59 chr3R:21862162-21862282 3.4e-05 6_[+2]_106 chr3R:10684410-10684530 3.4e-05 73_[+2]_39 chr2R:22511635-22511755 3.4e-05 5_[+2]_107 chr2L:20780887-20781007 4.6e-05 14_[+2]_98 chr2R:22510878-22510998 4.6e-05 77_[+2]_35 chr2R:6605976-6606096 4.6e-05 6_[+2]_106 chr3L:10519081-10519201 5.1e-05 12_[+2]_100 chr3R:4886283-4886403 5.1e-05 104_[+2]_8 chr3R:20285838-20285958 5.1e-05 97_[+2]_15 chr2R:17422102-17422222 6e-05 34_[+2]_78 chr2L:8852333-8852453 6e-05 63_[+2]_49 chr3L:7979100-7979220 6e-05 18_[+2]_94 chr3R:10665006-10665126 7.5e-05 76_[+2]_36 chr3R:26963946-26964066 9.8e-05 103_[+2]_9 chr3L:21479818-21479938 9.8e-05 69_[+2]_43 chrM:2596-2716 9.8e-05 20_[+2]_92 chr3L:19906893-19907013 0.00011 87_[+2]_25 chr2L:430966-431086 0.00011 95_[+2]_17 chr2R:18695174-18695294 0.00011 32_[+2]_80 chr3R:31551093-31551213 0.00011 81_[+2]_31 chr3R:23783201-23783321 0.00016 75_[+2]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCTGY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCMGCTGY width=8 seqs=34 chr2R:12543798-12543918 ( 103) GCCGCTGC 1 chrX:17123878-17123998 ( 28) GCCGCTGC 1 chr2L:5997762-5997882 ( 70) GCCGCCGC 1 chr2L:18653440-18653560 ( 71) GGCGCTGC 1 chr2R:10276380-10276500 ( 93) GGCGCTGC 1 chr3R:13686708-13686828 ( 24) GCCGCTGT 1 chr3L:5447279-5447399 ( 6) GCCGCTGT 1 chrX:11660613-11660733 ( 107) GCAGCTGC 1 chrM:5367-5487 ( 80) GCAGCTGC 1 chr3L:5869745-5869865 ( 66) GCTGCTGC 1 chr2R:13584188-13584308 ( 99) GCAGCCGC 1 chrX:5084912-5085032 ( 41) GCCGCCGT 1 chr2R:11632504-11632624 ( 54) GCTGCTGC 1 chr3R:21862162-21862282 ( 7) GTCGCTGC 1 chr3R:10684410-10684530 ( 74) GGAGCTGC 1 chr2R:22511635-22511755 ( 6) GGAGCTGC 1 chr2L:20780887-20781007 ( 15) GCCGTTGC 1 chr2R:22510878-22510998 ( 78) GCCGTTGC 1 chr2R:6605976-6606096 ( 7) GCAGCTGT 1 chr3L:10519081-10519201 ( 13) GCGGCTGT 1 chr3R:4886283-4886403 ( 105) GCGGCTGT 1 chr3R:20285838-20285958 ( 98) GCGGCTGT 1 chr2R:17422102-17422222 ( 35) GGTGCTGC 1 chr2L:8852333-8852453 ( 64) GTCGCCGC 1 chr3L:7979100-7979220 ( 19) GTCGCCGC 1 chr3R:10665006-10665126 ( 77) GCGGCCGT 1 chr3R:26963946-26964066 ( 104) GTAGCTGC 1 chr3L:21479818-21479938 ( 70) GGCGTTGC 1 chrM:2596-2716 ( 21) GGAGCTGT 1 chr3L:19906893-19907013 ( 88) GCAGTTGC 1 chr2L:430966-431086 ( 96) GCCGTTGT 1 chr2R:18695174-18695294 ( 33) GCTGCCGT 1 chr3R:31551093-31551213 ( 82) GCTGCCGT 1 chr3R:23783201-23783321 ( 76) GCCTCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCTGY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 9.9e-003 -1173 -1173 252 -1173 -1173 187 24 -146 -26 134 -57 -114 -1173 -1173 248 -346 -1173 220 -1173 -114 -1173 34 -1173 124 -1173 -1173 252 -1173 -1173 180 -1173 12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCTGY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 9.9e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.676471 0.205882 0.117647 0.264706 0.470588 0.117647 0.147059 0.000000 0.000000 0.970588 0.029412 0.000000 0.852941 0.000000 0.147059 0.000000 0.235294 0.000000 0.764706 0.000000 0.000000 1.000000 0.000000 0.000000 0.647059 0.000000 0.352941 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCTGY MEME-2 regular expression -------------------------------------------------------------------------------- G[CG][CA]GC[TC]G[CT] -------------------------------------------------------------------------------- Time 13.70 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTTTGYT MEME-3 width = 8 sites = 59 llr = 461 E-value = 1.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTTTGYT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :2:::2:: pos.-specific C ::1:::53 probability G :8:::8:: matrix T a:9aa:57 bits 2.5 2.3 2.0 1.8 * * Relative 1.5 ** *** Entropy 1.3 ****** (11.3 bits) 1.0 ****** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGTTTGCT consensus TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGYT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16384107-16384227 18 2.01e-05 AACAACCTGA TGTTTGCT TACTACTTAG chr3R:13686708-13686828 50 2.01e-05 TTCGCGCGCG TGTTTGCT CTCGCCGTGG chr3L:1579435-1579555 82 2.01e-05 GTGTTTACTG TGTTTGCT GTGCCCTCAC chr2R:14488985-14489105 44 2.01e-05 CCATCTTTGC TGTTTGCT TATTAAATTT chr3L:5447279-5447399 48 2.01e-05 TCTGTGTTGC TGTTTGCT AAACACGTTT chr2R:21607964-21608084 50 2.01e-05 GCCTTATTTA TGTTTGCT TAACTTGCCC chr3R:20276124-20276244 66 2.01e-05 ACTTTCCTGT TGTTTGCT CAACACAACG chrX:11660613-11660733 34 2.01e-05 tcgctcgcaa tgtttgct ttgcatttgt chr2R:7754072-7754192 51 3.16e-05 TTTACCACCT TGTTTGCC ATTGTTTAAA chr2L:20780887-20781007 56 3.16e-05 AATATTTGCT TGTTTGCC TATTTGCTCA chr3R:16331783-16331903 75 3.16e-05 TTCTACGGTT TGTTTGCC TGCCTATCCG chr2R:6512369-6512489 90 3.16e-05 ACTCGACCGA TGTTTGCC TTGGGATTTT chr3L:1166395-1166515 45 3.16e-05 TTGACGTTTC TGTTTGCC GTTAAATAAA chr2R:13560901-13561021 2 3.16e-05 A TGTTTGCC TGATGGAAAT chr3R:15983680-15983800 26 3.16e-05 CAAATACAAT TGTTTGCC CTGAAAAATT chr3R:29831064-29831184 26 3.16e-05 TAAACACTTT TGTTTGCC ATCCGCGTCT chr3L:10519081-10519201 30 6.67e-05 TTGCCGTCTC TGTTTGTT TACCTATTTG chr2L:8164383-8164503 12 6.67e-05 ATGGCACTGC TGTTTGTT CTTTTGGGGC chr2R:10276380-10276500 2 6.67e-05 g tgtttgtt gtgtAAAAGG chr2L:8852333-8852453 80 6.67e-05 GCCTGTCGTC TGTTTGTT TTTCCATGGT chr3L:13865628-13865748 53 6.67e-05 ATTGTGTTTG TGTTTGTT AGACAAAAAC chr3R:6667403-6667523 100 6.67e-05 TACTGTTTTC TGTTTGTT CTACTTGTGT chr2R:18608991-18609111 77 6.67e-05 TCCCCCGTTT TGTTTGTT TGTCTGGAAT chr3L:3083634-3083754 12 6.67e-05 TTCATGTTGA TGTTTGTT TAATTGATTT chr3L:3543805-3543925 99 6.67e-05 gtgtgttttg tgtttgtt tatttgaatt chr3R:31551093-31551213 68 6.67e-05 tttgtttgaa tgtttgtt GTCTTAGCTG chr3R:18311687-18311807 34 6.67e-05 ttgtttcctt tgtttgtt tgttGTAACG chr2R:17422102-17422222 46 8.68e-05 GTGCTGCGCT TGTTTGTC CAGTCTCCCG chr2R:24593737-24593857 112 8.68e-05 ATGTCTTAAA TGTTTGTC A chr3R:9870081-9870201 39 8.68e-05 TGCGTATCGG TGTTTGTC TAGTGCCCAT chr2R:10225819-10225939 9 1.35e-04 GTAGTAAA TATTTGCT ATTTGTTTTT chr3L:17485533-17485653 73 1.35e-04 ACTTTGTCAT TATTTGCT TGCCGTTTGT chr3L:21464426-21464546 109 1.35e-04 GTTGATAAAA TATTTGCT CAGC chr3L:18403378-18403498 49 1.35e-04 GTGTGTGTCC TATTTGCT TTATGTCATT chrM:11255-11375 70 1.35e-04 TGATATTTTT TATTTGCT TATGCTATTT chr3L:10656926-10657046 57 1.71e-04 TTGACCCTGT TGTTTACT GTTTATTACG chrX:6702123-6702243 86 1.71e-04 ACATTCAAAA TGTTTACT TAGTATGTCG chrM:5367-5487 23 1.71e-04 TTTATTAGTA TGTTTACT ACGACATTTA chr2L:19196887-19197007 47 1.99e-04 CACTGTCATA TGCTTGCC ATATTTTTTG chr3L:2798570-2798690 98 1.99e-04 TTTCCTACAC TATTTGCC CAGTTCATAA chr2R:7530729-7530849 91 2.31e-04 TTGTTGCTTG TGTTTGCG GAGCGAGGAA chr2R:19357526-19357646 6 2.31e-04 TATTT TGTTTACC ACACACACAC chr3R:23783201-23783321 93 2.31e-04 CCCTTTTTTG TGTTTGCG CGTTTACTAG chr3L:6216105-6216225 98 2.50e-04 CAGGCGCACA TGTTTGGT TTCAGAGATT chr2R:23589261-23589381 20 3.33e-04 TACGAGTGCG TATTTGTT TTTGTGTTAC chr3R:19464231-19464351 33 3.33e-04 TAAACAACGC TGCTTGTT AAAATTAAAA chr3L:13235608-13235728 6 3.33e-04 TTGAT TGCTTGTT GCTGTTAGTT chr3L:9856557-9856677 75 3.33e-04 TGTATCATAA TATTTGTT AAGAACGTTC chr2L:4838599-4838719 12 3.33e-04 ACGGGGCATT TGCTTGTT AATCCCTTTT chr2R:6605976-6606096 36 3.33e-04 GTTGTACTTC TATTTGTT CCCGCCAAAC chrM:1956-2076 59 3.33e-04 CGTATACCTt tatttgtt tgatcagtag chr3R:11269150-11269270 37 4.08e-04 CGCCCTCTGT TGTTTGGC TTCCTGAACA chr3L:9397239-9397359 78 4.08e-04 CAATAGCCAA TGTTTATT CAACAACGAC chr3R:23723792-23723912 28 4.08e-04 TTTACCTTGC TGTTTATT TACAACACTT chr3L:9034404-9034524 57 4.08e-04 ACATGTAGTC TGTTTATT TAGAAACTTA chr3R:6406440-6406560 65 4.08e-04 TTCGTATGTG TGTTTATT TTACGCCCTT chrM:10697-10817 8 4.56e-04 TTAATCA TATTTGTC GAGACGTTAA chr2L:3827781-3827901 93 5.11e-04 TTCTAATATA TGTTTATC AAAGTTCGAA chrM:1757-1877 91 5.11e-04 CAGGATGAAC TGTTTATC CACCTCTATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGYT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16384107-16384227 2e-05 17_[+3]_95 chr3R:13686708-13686828 2e-05 49_[+3]_63 chr3L:1579435-1579555 2e-05 81_[+3]_31 chr2R:14488985-14489105 2e-05 43_[+3]_69 chr3L:5447279-5447399 2e-05 47_[+3]_65 chr2R:21607964-21608084 2e-05 49_[+3]_63 chr3R:20276124-20276244 2e-05 65_[+3]_47 chrX:11660613-11660733 2e-05 33_[+3]_79 chr2R:7754072-7754192 3.2e-05 50_[+3]_62 chr2L:20780887-20781007 3.2e-05 55_[+3]_57 chr3R:16331783-16331903 3.2e-05 74_[+3]_38 chr2R:6512369-6512489 3.2e-05 89_[+3]_23 chr3L:1166395-1166515 3.2e-05 44_[+3]_68 chr2R:13560901-13561021 3.2e-05 1_[+3]_111 chr3R:15983680-15983800 3.2e-05 25_[+3]_87 chr3R:29831064-29831184 3.2e-05 25_[+3]_87 chr3L:10519081-10519201 6.7e-05 29_[+3]_83 chr2L:8164383-8164503 6.7e-05 11_[+3]_101 chr2R:10276380-10276500 6.7e-05 1_[+3]_111 chr2L:8852333-8852453 6.7e-05 79_[+3]_33 chr3L:13865628-13865748 6.7e-05 52_[+3]_60 chr3R:6667403-6667523 6.7e-05 99_[+3]_13 chr2R:18608991-18609111 6.7e-05 76_[+3]_36 chr3L:3083634-3083754 6.7e-05 11_[+3]_101 chr3L:3543805-3543925 6.7e-05 98_[+3]_14 chr3R:31551093-31551213 6.7e-05 67_[+3]_45 chr3R:18311687-18311807 6.7e-05 33_[+3]_79 chr2R:17422102-17422222 8.7e-05 45_[+3]_67 chr2R:24593737-24593857 8.7e-05 111_[+3]_1 chr3R:9870081-9870201 8.7e-05 38_[+3]_74 chr2R:10225819-10225939 0.00013 8_[+3]_104 chr3L:17485533-17485653 0.00013 72_[+3]_40 chr3L:21464426-21464546 0.00013 108_[+3]_4 chr3L:18403378-18403498 0.00013 48_[+3]_64 chrM:11255-11375 0.00013 69_[+3]_43 chr3L:10656926-10657046 0.00017 56_[+3]_56 chrX:6702123-6702243 0.00017 85_[+3]_27 chrM:5367-5487 0.00017 22_[+3]_90 chr2L:19196887-19197007 0.0002 46_[+3]_66 chr3L:2798570-2798690 0.0002 97_[+3]_15 chr2R:7530729-7530849 0.00023 90_[+3]_22 chr2R:19357526-19357646 0.00023 5_[+3]_107 chr3R:23783201-23783321 0.00023 92_[+3]_20 chr3L:6216105-6216225 0.00025 97_[+3]_15 chr2R:23589261-23589381 0.00033 19_[+3]_93 chr3R:19464231-19464351 0.00033 32_[+3]_80 chr3L:13235608-13235728 0.00033 5_[+3]_107 chr3L:9856557-9856677 0.00033 74_[+3]_38 chr2L:4838599-4838719 0.00033 11_[+3]_101 chr2R:6605976-6606096 0.00033 35_[+3]_77 chrM:1956-2076 0.00033 58_[+3]_54 chr3R:11269150-11269270 0.00041 36_[+3]_76 chr3L:9397239-9397359 0.00041 77_[+3]_35 chr3R:23723792-23723912 0.00041 27_[+3]_85 chr3L:9034404-9034524 0.00041 56_[+3]_56 chr3R:6406440-6406560 0.00041 64_[+3]_48 chrM:10697-10817 0.00046 7_[+3]_105 chr2L:3827781-3827901 0.00051 92_[+3]_20 chrM:1757-1877 0.00051 90_[+3]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGYT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTTTGYT width=8 seqs=59 chrX:16384107-16384227 ( 18) TGTTTGCT 1 chr3R:13686708-13686828 ( 50) TGTTTGCT 1 chr3L:1579435-1579555 ( 82) TGTTTGCT 1 chr2R:14488985-14489105 ( 44) TGTTTGCT 1 chr3L:5447279-5447399 ( 48) TGTTTGCT 1 chr2R:21607964-21608084 ( 50) TGTTTGCT 1 chr3R:20276124-20276244 ( 66) TGTTTGCT 1 chrX:11660613-11660733 ( 34) TGTTTGCT 1 chr2R:7754072-7754192 ( 51) TGTTTGCC 1 chr2L:20780887-20781007 ( 56) TGTTTGCC 1 chr3R:16331783-16331903 ( 75) TGTTTGCC 1 chr2R:6512369-6512489 ( 90) TGTTTGCC 1 chr3L:1166395-1166515 ( 45) TGTTTGCC 1 chr2R:13560901-13561021 ( 2) TGTTTGCC 1 chr3R:15983680-15983800 ( 26) TGTTTGCC 1 chr3R:29831064-29831184 ( 26) TGTTTGCC 1 chr3L:10519081-10519201 ( 30) TGTTTGTT 1 chr2L:8164383-8164503 ( 12) TGTTTGTT 1 chr2R:10276380-10276500 ( 2) TGTTTGTT 1 chr2L:8852333-8852453 ( 80) TGTTTGTT 1 chr3L:13865628-13865748 ( 53) TGTTTGTT 1 chr3R:6667403-6667523 ( 100) TGTTTGTT 1 chr2R:18608991-18609111 ( 77) TGTTTGTT 1 chr3L:3083634-3083754 ( 12) TGTTTGTT 1 chr3L:3543805-3543925 ( 99) TGTTTGTT 1 chr3R:31551093-31551213 ( 68) TGTTTGTT 1 chr3R:18311687-18311807 ( 34) TGTTTGTT 1 chr2R:17422102-17422222 ( 46) TGTTTGTC 1 chr2R:24593737-24593857 ( 112) TGTTTGTC 1 chr3R:9870081-9870201 ( 39) TGTTTGTC 1 chr2R:10225819-10225939 ( 9) TATTTGCT 1 chr3L:17485533-17485653 ( 73) TATTTGCT 1 chr3L:21464426-21464546 ( 109) TATTTGCT 1 chr3L:18403378-18403498 ( 49) TATTTGCT 1 chrM:11255-11375 ( 70) TATTTGCT 1 chr3L:10656926-10657046 ( 57) TGTTTACT 1 chrX:6702123-6702243 ( 86) TGTTTACT 1 chrM:5367-5487 ( 23) TGTTTACT 1 chr2L:19196887-19197007 ( 47) TGCTTGCC 1 chr3L:2798570-2798690 ( 98) TATTTGCC 1 chr2R:7530729-7530849 ( 91) TGTTTGCG 1 chr2R:19357526-19357646 ( 6) TGTTTACC 1 chr3R:23783201-23783321 ( 93) TGTTTGCG 1 chr3L:6216105-6216225 ( 98) TGTTTGGT 1 chr2R:23589261-23589381 ( 20) TATTTGTT 1 chr3R:19464231-19464351 ( 33) TGCTTGTT 1 chr3L:13235608-13235728 ( 6) TGCTTGTT 1 chr3L:9856557-9856677 ( 75) TATTTGTT 1 chr2L:4838599-4838719 ( 12) TGCTTGTT 1 chr2R:6605976-6606096 ( 36) TATTTGTT 1 chrM:1956-2076 ( 59) TATTTGTT 1 chr3R:11269150-11269270 ( 37) TGTTTGGC 1 chr3L:9397239-9397359 ( 78) TGTTTATT 1 chr3R:23723792-23723912 ( 28) TGTTTATT 1 chr3L:9034404-9034524 ( 57) TGTTTATT 1 chr3R:6406440-6406560 ( 65) TGTTTATT 1 chrM:10697-10817 ( 8) TATTTGTC 1 chr2L:3827781-3827901 ( 93) TGTTTATC 1 chrM:1757-1877 ( 91) TGTTTATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGYT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1641 E= 1.4e-002 -1253 -1253 -1253 163 -76 -1253 222 -1253 -1253 -145 -1253 152 -1253 -1253 -1253 163 -1253 -1253 -1253 163 -90 -1253 225 -1253 -1253 141 -236 55 -1253 72 -236 103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGYT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 1.4e-002 0.000000 0.000000 0.000000 1.000000 0.186441 0.000000 0.813559 0.000000 0.000000 0.067797 0.000000 0.932203 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.169492 0.000000 0.830508 0.000000 0.000000 0.491525 0.033898 0.474576 0.000000 0.305085 0.033898 0.661017 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGYT MEME-3 regular expression -------------------------------------------------------------------------------- TGTTTG[CT][TC] -------------------------------------------------------------------------------- Time 19.84 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGCSCC MEME-4 width = 8 sites = 9 llr = 100 E-value = 2.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGCSCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::2: pos.-specific C ::a1a769 probability G aa:9:3:1 matrix T ::::::2: bits 2.5 *** * 2.3 *** * 2.0 ***** * 1.8 ***** * Relative 1.5 ****** * Entropy 1.3 ****** * (16.0 bits) 1.0 ****** * 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCGCCCC consensus GA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCSCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7135261-7135381 81 1.17e-06 AGTGTTCGGA GGCGCCCC GCTGAGTGGA chr3R:10665006-10665126 59 1.17e-06 ATGAGAGAGT GGCGCCCC CAAGCGGTCG chr3L:2475983-2476103 49 2.27e-06 GATTCTTTAT GGCGCGCC ACGCTCATCC chr2L:19196887-19197007 85 6.31e-06 AATTCCGGCG GGCGCCTC GACGTCCTCC chr3R:18929167-18929287 113 6.31e-06 CTGAAGTGCG GGCGCCAC chr2R:19997546-19997666 57 6.31e-06 CCCAGCAGAG GGCGCCAC TCTCTCGCAG chr3R:31061475-31061595 75 1.12e-05 GTATCCAGGT GGCGCCCG AAACAAAAGG chr2L:8852333-8852453 110 1.12e-05 TTGTTTGTGC GGCGCGTC AAC chr3R:23657964-23658084 65 1.46e-05 cgcaatcgcT GGCCCGCC GCTGATGTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCSCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7135261-7135381 1.2e-06 80_[+4]_32 chr3R:10665006-10665126 1.2e-06 58_[+4]_54 chr3L:2475983-2476103 2.3e-06 48_[+4]_64 chr2L:19196887-19197007 6.3e-06 84_[+4]_28 chr3R:18929167-18929287 6.3e-06 112_[+4] chr2R:19997546-19997666 6.3e-06 56_[+4]_56 chr3R:31061475-31061595 1.1e-05 74_[+4]_38 chr2L:8852333-8852453 1.1e-05 109_[+4]_3 chr3R:23657964-23658084 1.5e-05 64_[+4]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCSCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGCSCC width=8 seqs=9 chr2L:7135261-7135381 ( 81) GGCGCCCC 1 chr3R:10665006-10665126 ( 59) GGCGCCCC 1 chr3L:2475983-2476103 ( 49) GGCGCGCC 1 chr2L:19196887-19197007 ( 85) GGCGCCTC 1 chr3R:18929167-18929287 ( 113) GGCGCCAC 1 chr2R:19997546-19997666 ( 57) GGCGCCAC 1 chr3R:31061475-31061595 ( 75) GGCGCCCG 1 chr2L:8852333-8852453 ( 110) GGCGCGTC 1 chr3R:23657964-23658084 ( 65) GGCCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCSCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 2.1e+002 -982 -982 252 -982 -982 -982 252 -982 -982 243 -982 -982 -982 -74 235 -982 -982 243 -982 -982 -982 184 93 -982 -51 158 -982 -54 -982 226 -65 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCSCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.1e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.222222 0.555556 0.000000 0.222222 0.000000 0.888889 0.111111 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCSCC MEME-4 regular expression -------------------------------------------------------------------------------- GGCGC[CG][CAT]C -------------------------------------------------------------------------------- Time 25.86 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGTGT MEME-5 width = 8 sites = 20 llr = 188 E-value = 2.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::1 pos.-specific C :::13::2 probability G a:a38:a2 matrix T :a:7:a:6 bits 2.5 * * * 2.3 * * * 2.0 * * * 1.8 * * * * Relative 1.5 *** *** Entropy 1.3 *** *** (13.6 bits) 1.0 *** *** 0.8 ******* 0.5 ******* 0.3 ******** 0.0 -------- Multilevel GTGTGTGT consensus GC G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17422102-17422222 2 1.01e-05 t gtgtgtgt TATTTACCGC chr3L:15566562-15566682 34 1.01e-05 CCCGTTGGCC GTGTGTGT GCGCACCTAG chr3R:23723792-23723912 73 1.01e-05 TGCCTTATCG gtgtgtgt gtatgtgtgt chr3R:20285838-20285958 112 1.01e-05 ctgtgagagt gtgtgtgt g chr2L:4838599-4838719 78 1.01e-05 ATTGACGTGG GTGTGTGT ACATATCGAA chr3L:18403378-18403498 39 1.01e-05 GGGTTCCTTT GTGTGTGT CCTATTTGCT chr3L:3543805-3543925 87 1.01e-05 tttgcctcgt gtgtgtgt tttgtgtttg chr2R:21704694-21704814 42 1.55e-05 GAATGTGCGA GTGTGTGG GTTTTTGCTT chr2R:7530729-7530849 50 2.67e-05 TACGTATGTC GTGTGTGC GCACCTCTAA chr2L:18148975-18149095 92 2.97e-05 TTGGGGTGAA GTGGGTGG CGAGGATAGT chr2L:9633982-9634102 98 4.05e-05 GAGTGCCCCA GTGTCTGT GCCGATAGTC chr2L:8852333-8852453 14 4.05e-05 CGATGGACGC GTGTCTGT TTATTAATTG chr3L:9045361-9045481 35 4.36e-05 TGACGCAGAG GTGGGTGC ACGGAGAAAA chr3L:12755086-12755206 80 4.36e-05 ACCTCATAAC GTGGGTGC TGAACACGTA chr3R:5015350-5015470 56 4.94e-05 TTTATGCAGC GTGTCTGG CGTGACTATG chr2R:13966202-13966322 15 5.52e-05 TTTTCGTGCT GTGGCTGT GTCAATATGC chr3L:10519081-10519201 88 6.50e-05 GTAGTCACAC GTGTGTGA GGTTCCCCTT chr3L:16769988-16770108 106 6.50e-05 GTCAAAGCCA GTGTGTGA AAGAGAG chr2L:7135261-7135381 103 7.43e-05 AGTGGAGATG GTGGCTGG CGGGGAAATT chr2R:22511635-22511755 107 8.54e-05 gctatcagct GTGCGTGT CAGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17422102-17422222 1e-05 1_[+5]_111 chr3L:15566562-15566682 1e-05 33_[+5]_79 chr3R:23723792-23723912 1e-05 72_[+5]_40 chr3R:20285838-20285958 1e-05 111_[+5]_1 chr2L:4838599-4838719 1e-05 77_[+5]_35 chr3L:18403378-18403498 1e-05 38_[+5]_74 chr3L:3543805-3543925 1e-05 86_[+5]_26 chr2R:21704694-21704814 1.6e-05 41_[+5]_71 chr2R:7530729-7530849 2.7e-05 49_[+5]_63 chr2L:18148975-18149095 3e-05 91_[+5]_21 chr2L:9633982-9634102 4e-05 97_[+5]_15 chr2L:8852333-8852453 4e-05 13_[+5]_99 chr3L:9045361-9045481 4.4e-05 34_[+5]_78 chr3L:12755086-12755206 4.4e-05 79_[+5]_33 chr3R:5015350-5015470 4.9e-05 55_[+5]_57 chr2R:13966202-13966322 5.5e-05 14_[+5]_98 chr3L:10519081-10519201 6.5e-05 87_[+5]_25 chr3L:16769988-16770108 6.5e-05 105_[+5]_7 chr2L:7135261-7135381 7.4e-05 102_[+5]_10 chr2R:22511635-22511755 8.5e-05 106_[+5]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGTGT width=8 seqs=20 chr2R:17422102-17422222 ( 2) GTGTGTGT 1 chr3L:15566562-15566682 ( 34) GTGTGTGT 1 chr3R:23723792-23723912 ( 73) GTGTGTGT 1 chr3R:20285838-20285958 ( 112) GTGTGTGT 1 chr2L:4838599-4838719 ( 78) GTGTGTGT 1 chr3L:18403378-18403498 ( 39) GTGTGTGT 1 chr3L:3543805-3543925 ( 87) GTGTGTGT 1 chr2R:21704694-21704814 ( 42) GTGTGTGG 1 chr2R:7530729-7530849 ( 50) GTGTGTGC 1 chr2L:18148975-18149095 ( 92) GTGGGTGG 1 chr2L:9633982-9634102 ( 98) GTGTCTGT 1 chr2L:8852333-8852453 ( 14) GTGTCTGT 1 chr3L:9045361-9045481 ( 35) GTGGGTGC 1 chr3L:12755086-12755206 ( 80) GTGGGTGC 1 chr3R:5015350-5015470 ( 56) GTGTCTGG 1 chr2R:13966202-13966322 ( 15) GTGGCTGT 1 chr3L:10519081-10519201 ( 88) GTGTGTGA 1 chr3L:16769988-16770108 ( 106) GTGTGTGA 1 chr2L:7135261-7135381 ( 103) GTGGCTGG 1 chr2R:22511635-22511755 ( 107) GTGCGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4069 E= 2.2e+003 -1097 -1097 252 -1097 -1097 -1097 -1097 163 -1097 -1097 252 -1097 -1097 -189 52 111 -1097 43 210 -1097 -1097 -1097 -1097 163 -1097 -1097 252 -1097 -166 -31 20 76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 2.2e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.050000 0.250000 0.700000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.100000 0.150000 0.200000 0.550000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 regular expression -------------------------------------------------------------------------------- GTG[TG][GC]TG[TG] -------------------------------------------------------------------------------- Time 31.89 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:4710-4830 9.00e-01 120 chrM:5966-6086 9.97e-01 120 chrM:12764-12884 7.61e-01 120 chrM:11972-12092 9.69e-01 120 chrM:13256-13376 8.96e-01 120 chrM:11255-11375 1.65e-01 120 chrM:7141-7261 3.06e-01 120 chrM:12195-12315 7.02e-01 120 chrM:14126-14246 7.60e-01 120 chrM:4951-5071 8.47e-01 120 chrM:2596-2716 4.39e-02 20_[+2(9.77e-05)]_92 chrM:7459-7579 7.43e-01 120 chrM:2800-2920 9.91e-01 120 chrM:3526-3646 6.00e-01 120 chrM:5367-5487 1.15e-02 79_[+2(1.22e-05)]_33 chrM:10697-10817 4.40e-01 120 chrM:5166-5286 9.13e-01 120 chrM:14356-14476 9.41e-01 120 chrM:1956-2076 6.25e-01 120 chrM:8650-8770 9.71e-01 120 chrM:1757-1877 4.50e-01 120 chrM:10900-11020 6.79e-02 120 chr2R:15247894-15248014 9.18e-01 120 chr2R:14077579-14077699 9.13e-02 99_[+1(4.67e-05)]_13 chr3R:29831064-29831184 6.44e-05 25_[+3(3.16e-05)]_58_[+1(1.04e-05)]_\ 21 chr3R:6406440-6406560 6.23e-02 120 chr3R:15983680-15983800 8.00e-03 25_[+3(3.16e-05)]_87 chr3R:18311687-18311807 1.30e-01 20_[+3(6.67e-05)]_5_[+3(6.67e-05)]_\ 79 chr3L:16769988-16770108 2.93e-02 105_[+5(6.50e-05)]_7 chr3R:14670981-14671101 1.82e-01 120 chr2L:5256568-5256688 8.08e-02 120 chr3R:31551093-31551213 7.82e-04 34_[+3(6.67e-05)]_25_[+3(6.67e-05)]_\ 45 chr3R:9870081-9870201 6.98e-04 38_[+3(8.68e-05)]_51_[+1(5.79e-05)]_\ 15 chr3L:3543805-3543925 3.75e-04 44_[+5(5.52e-05)]_32_[+5(1.01e-05)]_\ 6_[+3(6.67e-05)]_14 chr2R:24593737-24593857 7.55e-05 54_[+1(2.78e-05)]_22_[+4(3.15e-05)]_\ 19_[+3(8.68e-05)]_1 chr3R:22589551-22589671 7.49e-02 120 chr2R:13560901-13561021 7.99e-03 1_[+3(3.16e-05)]_82_[+3(6.67e-05)]_\ 21 chr3L:18403378-18403498 5.42e-03 38_[+5(1.01e-05)]_74 chr3R:8212744-8212864 3.26e-01 120 chr3L:21962056-21962176 2.11e-01 120 chr3L:21464426-21464546 4.90e-04 66_[+1(9.46e-05)]_46 chr3L:6216105-6216225 4.59e-02 120 chr3L:13189415-13189535 1.59e-02 120 chr3L:1166395-1166515 2.59e-03 44_[+3(3.16e-05)]_68 chr2R:6605976-6606096 6.89e-04 6_[+2(4.56e-05)]_32_[+1(5.79e-05)]_\ 66 chr2R:11632504-11632624 2.09e-02 53_[+2(2.28e-05)]_59 chrX:11660613-11660733 4.54e-05 15_[+3(2.01e-05)]_10_[+3(2.01e-05)]_\ 7_[+3(8.68e-05)]_8_[+3(2.01e-05)]_9_[+3(3.16e-05)]_17_[+2(1.22e-05)]_6 chr3R:13999709-13999829 9.03e-01 120 chr3L:5987777-5987897 8.63e-01 120 chr3R:20276124-20276244 1.57e-02 65_[+3(2.01e-05)]_47 chr3L:3083634-3083754 1.24e-01 11_[+3(6.67e-05)]_101 chr2L:11206985-11207105 1.96e-01 120 chr3R:31395334-31395454 7.27e-01 120 chr2L:8860909-8861029 3.01e-01 120 chr3L:14956411-14956531 2.84e-01 120 chr2L:4838599-4838719 2.65e-03 77_[+5(1.01e-05)]_35 chr3R:23922997-23923117 8.05e-01 120 chr3R:23783201-23783321 7.32e-03 120 chr2R:18608991-18609111 2.92e-02 76_[+3(6.67e-05)]_36 chr3R:14469889-14470009 9.75e-01 120 chrX:16644925-16645045 6.36e-02 120 chr3L:5187652-5187772 7.50e-01 120 chr2L:18899410-18899530 3.51e-01 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17_[+1(5.79e-05)]_95 chr3R:20285838-20285958 4.14e-04 97_[+2(5.08e-05)]_4_[+5(1.01e-05)]_\ 3 chr2R:13584188-13584308 7.29e-04 72_[+1(1.66e-05)]_18_[+2(2.28e-05)]_\ 14 chr3L:9856557-9856677 3.22e-01 120 chr2R:25085543-25085663 5.04e-01 120 chr3R:5015350-5015470 2.08e-04 55_[+5(4.94e-05)]_57 chr2L:5997762-5997882 1.28e-05 69_[+2(3.22e-06)]_30_[+1(6.45e-05)]_\ 5 chr3L:9034404-9034524 2.91e-02 120 chr2L:19434411-19434531 1.53e-01 120 chr3L:7151983-7152103 3.83e-01 120 chr3R:10684410-10684530 2.18e-02 73_[+2(3.40e-05)]_39 chr3R:13794103-13794223 9.89e-01 120 chr3L:13235608-13235728 1.13e-03 46_[+1(4.67e-05)]_22_[+1(9.46e-05)]_\ 7_[+1(5.79e-05)]_21 chr3L:12062973-12063093 9.74e-01 120 chr2R:21607964-21608084 2.80e-03 49_[+3(2.01e-05)]_63 chr2R:20997825-20997945 6.91e-01 120 chr2R:17457362-17457482 2.07e-01 120 chr2R:20837997-20838117 6.59e-01 120 chr3L:5974710-5974830 2.85e-01 120 chr2L:8852333-8852453 3.41e-06 13_[+5(4.05e-05)]_42_[+2(5.99e-05)]_\ 8_[+3(6.67e-05)]_22_[+4(1.12e-05)]_3 chr2L:10467013-10467133 1.19e-01 120 chr3L:14758189-14758309 8.71e-01 120 chr3L:5447279-5447399 3.30e-06 5_[+2(1.22e-05)]_34_[+3(2.01e-05)]_\ 65 chr2R:9183636-9183756 1.29e-01 120 chr2R:15128152-15128272 2.40e-01 120 chr2L:11453079-11453199 9.79e-01 120 chr2R:6512369-6512489 5.33e-03 89_[+3(3.16e-05)]_23 chr2R:20313966-20314086 3.54e-01 120 chr3R:19465434-19465554 9.42e-01 120 chr2R:21093229-21093349 9.64e-01 120 chr2L:3628904-3629024 3.62e-02 8_[+1(9.46e-05)]_84_[+1(1.04e-05)]_\ 12 chr3R:23723792-23723912 1.93e-03 72_[+5(1.01e-05)]_40 chr3R:10665006-10665126 7.07e-05 58_[+4(1.17e-06)]_10_[+2(7.46e-05)]_\ 36 chr2L:3827781-3827901 5.10e-01 120 chr3L:21479818-21479938 2.24e-02 69_[+2(9.77e-05)]_43 chr3R:16331783-16331903 8.12e-05 26_[+1(1.04e-05)]_40_[+3(3.16e-05)]_\ 38 chr3L:3862557-3862677 5.34e-01 120 chr2L:12371901-12372021 3.48e-01 120 chr3L:7988984-7989104 9.56e-01 120 chr3L:13957384-13957504 9.76e-01 120 chr3R:16337212-16337332 1.52e-01 120 chr2L:12535865-12535985 3.34e-02 120 chr2R:19997546-19997666 1.43e-02 56_[+4(6.31e-06)]_56 chrX:3022571-3022691 6.07e-01 120 chrX:17829085-17829205 7.17e-01 120 chr2R:19857776-19857896 8.95e-01 120 chr2R:16584033-16584153 2.19e-01 61_[+1(6.45e-05)]_51 chr2R:15136864-15136984 7.88e-01 120 chr2R:14488985-14489105 6.26e-06 18_[+4(4.04e-05)]_17_[+3(2.01e-05)]_\ 40_[+1(1.04e-05)]_21 chr2L:9633982-9634102 1.65e-02 97_[+5(4.05e-05)]_15 chr2R:13998466-13998586 5.03e-01 120 chr3R:19464231-19464351 9.37e-03 56_[+1(1.04e-05)]_56 chr2L:17380022-17380142 2.13e-01 120 chr3L:5869745-5869865 1.17e-02 65_[+2(2.28e-05)]_47 chr3L:6124761-6124881 7.75e-02 120 chr2L:18693967-18694087 1.03e-02 120 chr2L:9133302-9133422 8.78e-01 120 chr2L:3437162-3437282 9.86e-01 120 chr2R:7530729-7530849 7.18e-04 49_[+5(2.67e-05)]_63 chr3L:9397239-9397359 6.74e-02 120 chr2L:2182857-2182977 7.34e-01 120 chr3R:31252680-31252800 5.14e-01 120 chr3R:22590809-22590929 5.78e-01 120 chr3R:15651888-15652008 7.91e-01 120 chr3L:15566562-15566682 1.95e-03 33_[+5(1.01e-05)]_25_[+5(6.50e-05)]_\ 46 chr2R:18695174-18695294 1.65e-02 120 chr2L:18148975-18149095 3.62e-03 91_[+5(2.97e-05)]_21 chr3R:4813441-4813561 9.36e-01 120 chr3R:11269150-11269270 5.32e-02 120 chr3R:20292689-20292809 4.63e-01 120 chrX:14483891-14484011 4.49e-01 120 chr2L:8320200-8320320 5.85e-01 120 chr2L:3588452-3588572 9.84e-01 120 chr3R:31325209-31325329 6.40e-01 120 chr3R:10213621-10213741 6.85e-01 120 chr3R:9054737-9054857 5.25e-01 120 chr3L:2475983-2476103 2.46e-04 48_[+4(2.27e-06)]_64 chr3L:9045361-9045481 4.70e-02 34_[+5(4.36e-05)]_78 chr3R:21829034-21829154 7.09e-01 120 chr2L:522060-522180 5.47e-01 120 chr2R:17422102-17422222 1.15e-04 1_[+5(1.01e-05)]_25_[+2(5.99e-05)]_\ 3_[+3(8.68e-05)]_67 chr3L:2537302-2537422 2.76e-01 48_[+1(4.67e-05)]_64 chr2R:16586051-16586171 2.17e-01 120 chrX:12202356-12202476 1.00e+00 120 chr2R:10210833-10210953 8.75e-01 120 chrX:6702123-6702243 4.67e-01 120 chr3R:4886283-4886403 4.75e-02 104_[+2(5.08e-05)]_8 chr3R:18929167-18929287 2.31e-03 112_[+4(6.31e-06)] chr3L:17485533-17485653 2.97e-02 120 chr2R:10276380-10276500 2.93e-07 1_[+3(6.67e-05)]_8_[+1(1.04e-05)]_\ 67_[+2(5.13e-06)]_20 chr3L:3638720-3638840 8.14e-01 120 chr2R:6984521-6984641 8.94e-01 120 chr3L:10656926-10657046 7.73e-04 72_[+1(6.45e-05)]_40 chr3L:1579435-1579555 2.98e-03 81_[+3(2.01e-05)]_31 chr2L:8164383-8164503 6.07e-03 11_[+3(6.67e-05)]_36_[+3(6.67e-05)]_\ 57 chrX:17713880-17714000 7.98e-01 120 chr2L:1433835-1433955 5.15e-01 120 chr2L:20780887-20781007 6.96e-04 14_[+2(4.56e-05)]_33_[+3(3.16e-05)]_\ 57 chr3R:27246443-27246563 8.80e-01 120 chr3R:4663241-4663361 9.87e-01 120 chr3R:14591199-14591319 9.80e-01 120 chr3L:6071568-6071688 9.90e-01 120 chrX:14612434-14612554 7.17e-01 120 chr3R:5212450-5212570 9.00e-01 120 chr3L:1323197-1323317 5.12e-01 120 chr3R:23657964-23658084 3.53e-05 43_[+1(1.04e-05)]_13_[+4(1.46e-05)]_\ 48 chr2R:10225819-10225939 1.31e-01 120 chr2L:20917644-20917764 9.45e-01 120 chr3L:14297595-14297715 7.42e-01 120 chr2R:24062377-24062497 4.22e-01 120 chr3L:10769777-10769897 7.85e-01 120 chr2L:430966-431086 4.25e-03 11_[+1(6.45e-05)]_101 chr3R:10269190-10269310 9.99e-01 120 chr2R:22213885-22214005 8.72e-01 120 chr2R:12540795-12540915 8.70e-01 120 chr2L:19870092-19870212 9.99e-01 120 chr3R:23335750-23335870 6.12e-01 120 chr3L:4611474-4611594 9.07e-01 120 chr2L:1648757-1648877 8.31e-03 20_[+1(4.67e-05)]_68_[+4(9.37e-05)]_\ 16 chr3R:8926049-8926169 4.45e-01 120 chr3R:31061475-31061595 4.14e-02 74_[+4(1.12e-05)]_38 chr3L:10519081-10519201 1.28e-05 12_[+2(5.08e-05)]_9_[+3(6.67e-05)]_\ 50_[+5(6.50e-05)]_25 chr3L:1086380-1086500 1.88e-01 120 chrX:11528470-11528590 9.45e-01 120 chr3R:13686708-13686828 6.31e-05 23_[+2(1.22e-05)]_18_[+3(2.01e-05)]_\ 63 chr2L:14047344-14047464 8.48e-01 120 chr3R:9379124-9379244 9.84e-01 120 chr3R:24893498-24893618 9.52e-01 120 chr2L:19196887-19197007 1.67e-03 84_[+4(6.31e-06)]_28 chr2R:19256058-19256178 6.16e-01 120 chr2R:19714971-19715091 1.12e-01 120 chrX:1877254-1877374 7.24e-01 120 chr2L:7123815-7123935 9.89e-01 120 chr3R:14478780-14478900 9.36e-01 120 chr2L:18653440-18653560 7.84e-03 70_[+2(5.13e-06)]_42 chrX:15671258-15671378 9.93e-01 120 chrX:17123878-17123998 1.38e-02 27_[+2(2.04e-06)]_85 chr3R:13428435-13428555 6.90e-01 120 chr3R:26963946-26964066 1.11e-01 103_[+2(9.77e-05)]_9 chr2R:12543798-12543918 1.47e-03 102_[+2(2.04e-06)]_10 chr3L:12077444-12077564 7.20e-01 120 chr3R:29204733-29204853 3.32e-01 120 chr3L:11415524-11415644 9.95e-01 120 chr3R:21862162-21862282 2.44e-02 6_[+2(3.40e-05)]_106 chr3L:19906893-19907013 1.43e-02 109_[+1(1.66e-05)]_3 chrX:6533199-6533319 2.17e-01 120 chr2L:17382495-17382615 4.53e-01 120 chrX:16384107-16384227 1.26e-02 17_[+3(2.01e-05)]_95 chr3R:6936300-6936420 8.30e-01 120 chr3L:11422424-11422544 8.66e-01 120 chr2R:23589261-23589381 1.07e-01 120 chr3L:14661943-14662063 2.60e-01 120 chr2R:7754072-7754192 2.92e-03 50_[+3(3.16e-05)]_10_[+1(5.79e-05)]_\ 44 chr2L:7135261-7135381 4.09e-04 80_[+4(1.17e-06)]_14_[+5(7.43e-05)]_\ 10 chr2R:21704694-21704814 3.65e-04 41_[+5(1.55e-05)]_71 chr3R:20550683-20550803 2.19e-02 120 chr3R:17604369-17604489 2.32e-01 120 chr3L:725942-726062 9.34e-01 120 chr3R:23940638-23940758 7.65e-03 120 chrX:15021206-15021326 3.53e-01 120 chr3R:26886409-26886529 5.54e-01 120 chr3L:11416882-11417002 3.51e-02 2_[+1(1.04e-05)]_110 chr3R:21627911-21628031 1.43e-01 120 chr2R:22561112-22561232 2.10e-01 120 chr2R:18302838-18302958 7.63e-01 120 chr3R:14391387-14391507 1.76e-01 120 chr2L:5907528-5907648 2.94e-01 120 chrX:14627512-14627632 9.85e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************