******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Suvar3-9.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:3671231-3671351 1.0000 120 chr3R:26037302-26037422 1.0000 120 chr3R:15803306-15803426 1.0000 120 chr2R:21482277-21482397 1.0000 120 chrX:2731864-2731984 1.0000 120 chrX:21350707-21350827 1.0000 120 chrX:2468073-2468193 1.0000 120 chr3L:7381086-7381206 1.0000 120 chr2R:8638220-8638340 1.0000 120 chr3L:5768482-5768602 1.0000 120 chr3R:13264745-13264865 1.0000 120 chr2L:708207-708327 1.0000 120 chr2R:19278105-19278225 1.0000 120 chr2L:11187733-11187853 1.0000 120 chr3L:15721216-15721336 1.0000 120 chr3L:21558241-21558361 1.0000 120 chr3R:23709295-23709415 1.0000 120 chr2R:13230770-13230890 1.0000 120 chr3R:29670720-29670840 1.0000 120 chr2L:8686612-8686732 1.0000 120 chr2L:2236511-2236631 1.0000 120 chrX:18775433-18775553 1.0000 120 chr2L:13783032-13783152 1.0000 120 chr3L:749848-749968 1.0000 120 chr3L:15254175-15254295 1.0000 120 chr3L:4003636-4003756 1.0000 120 chr3R:27252816-27252936 1.0000 120 chr2R:21032103-21032223 1.0000 120 chr3R:23686900-23687020 1.0000 120 chr2R:23752944-23753064 1.0000 120 chr3R:25595386-25595506 1.0000 120 chrX:4636535-4636655 1.0000 120 chr2L:5997238-5997358 1.0000 120 chrX:2040851-2040971 1.0000 120 chr2R:11971104-11971224 1.0000 120 chrX:7105187-7105307 1.0000 120 chr2L:573979-574099 1.0000 120 chr3L:3873586-3873706 1.0000 120 chr2L:19197439-19197559 1.0000 120 chr2R:23850678-23850798 1.0000 120 chr3L:13031108-13031228 1.0000 120 chr3L:725619-725739 1.0000 120 chrX:17740819-17740939 1.0000 120 chrX:2703496-2703616 1.0000 120 chr3R:28819342-28819462 1.0000 120 chrX:795885-796005 1.0000 120 chr2R:13158062-13158182 1.0000 120 chr3R:7107450-7107570 1.0000 120 chr2R:6178538-6178658 1.0000 120 chr3L:20226797-20226917 1.0000 120 chr2L:11486468-11486588 1.0000 120 chr2R:13556030-13556150 1.0000 120 chr2L:6528213-6528333 1.0000 120 chr3R:12691184-12691304 1.0000 120 chrX:3545887-3546007 1.0000 120 chr3L:2439645-2439765 1.0000 120 chr3R:15218612-15218732 1.0000 120 chr2R:15890505-15890625 1.0000 120 chr2L:12427313-12427433 1.0000 120 chr3L:2773633-2773753 1.0000 120 chrX:15345577-15345697 1.0000 120 chrX:13722555-13722675 1.0000 120 chr3R:24226527-24226647 1.0000 120 chrX:19701434-19701554 1.0000 120 chr3R:22449722-22449842 1.0000 120 chr2R:7811735-7811855 1.0000 120 chrX:20490630-20490750 1.0000 120 chr3L:697297-697417 1.0000 120 chr3R:16828974-16829094 1.0000 120 chr2L:6215632-6215752 1.0000 120 chr3R:26000115-26000235 1.0000 120 chr3R:16072898-16073018 1.0000 120 chr2L:19051106-19051226 1.0000 120 chr2L:14577847-14577967 1.0000 120 chr2L:4459168-4459288 1.0000 120 chr2L:8073161-8073281 1.0000 120 chr2R:12334189-12334309 1.0000 120 chr2R:23976841-23976961 1.0000 120 chr3L:14975455-14975575 1.0000 120 chrX:17635613-17635733 1.0000 120 chr3L:21064474-21064594 1.0000 120 chr3L:19599306-19599426 1.0000 120 chr2L:11214362-11214482 1.0000 120 chr2R:19506294-19506414 1.0000 120 chr3R:10612895-10613015 1.0000 120 chrX:11581027-11581147 1.0000 120 chr3R:8139478-8139598 1.0000 120 chr2R:6599788-6599908 1.0000 120 chr2R:20561980-20562100 1.0000 120 chr3L:832912-833032 1.0000 120 chr3L:4745881-4746001 1.0000 120 chrX:17578656-17578776 1.0000 120 chrX:7891296-7891416 1.0000 120 chrX:13822990-13823110 1.0000 120 chrX:2251645-2251765 1.0000 120 chr3R:6986699-6986819 1.0000 120 chr3R:8001802-8001922 1.0000 120 chr3L:16128235-16128355 1.0000 120 chr3L:21635698-21635818 1.0000 120 chr3L:21031119-21031239 1.0000 120 chr3R:10815577-10815697 1.0000 120 chr3R:22718003-22718123 1.0000 120 chr3L:9005365-9005485 1.0000 120 chr2L:17473742-17473862 1.0000 120 chr3L:15620105-15620225 1.0000 120 chr2L:14273956-14274076 1.0000 120 chr3R:18984462-18984582 1.0000 120 chr2L:20757530-20757650 1.0000 120 chrX:2585160-2585280 1.0000 120 chr2R:20114061-20114181 1.0000 120 chrX:7893174-7893294 1.0000 120 chr2R:13552145-13552265 1.0000 120 chr3R:29219106-29219226 1.0000 120 chr3L:2263114-2263234 1.0000 120 chr3L:21286462-21286582 1.0000 120 chr3R:27606635-27606755 1.0000 120 chr3R:29130680-29130800 1.0000 120 chr3L:5776969-5777089 1.0000 120 chr3R:17645356-17645476 1.0000 120 chr2L:4442596-4442716 1.0000 120 chr3L:20367478-20367598 1.0000 120 chr3R:27921695-27921815 1.0000 120 chr2R:18421568-18421688 1.0000 120 chr3R:5083484-5083604 1.0000 120 chr3R:24597660-24597780 1.0000 120 chr2L:13228133-13228253 1.0000 120 chrX:18776423-18776543 1.0000 120 chr2R:15571124-15571244 1.0000 120 chr3L:8181101-8181221 1.0000 120 chr2R:23555765-23555885 1.0000 120 chr3R:16454600-16454720 1.0000 120 chr3L:13449982-13450102 1.0000 120 chrX:13683106-13683226 1.0000 120 chr2R:9591040-9591160 1.0000 120 chr3L:10659379-10659499 1.0000 120 chr3L:1617870-1617990 1.0000 120 chr3R:10613098-10613218 1.0000 120 chrX:18784042-18784162 1.0000 120 chr2R:13968492-13968612 1.0000 120 chr3L:5877627-5877747 1.0000 120 chr3R:26058792-26058912 1.0000 120 chr3R:29667209-29667329 1.0000 120 chr2L:6065676-6065796 1.0000 120 chr3L:609283-609403 1.0000 120 chr2L:18604751-18604871 1.0000 120 chr2R:10811570-10811690 1.0000 120 chr3L:696393-696513 1.0000 120 chr3R:8304849-8304969 1.0000 120 chr2L:2462470-2462590 1.0000 120 chr3L:10631505-10631625 1.0000 120 chr2L:4597745-4597865 1.0000 120 chr2R:23078799-23078919 1.0000 120 chr3R:26724790-26724910 1.0000 120 chr3L:20798880-20799000 1.0000 120 chr3L:21670352-21670472 1.0000 120 chr2L:3555497-3555617 1.0000 120 chr3L:12719786-12719906 1.0000 120 chr3R:27272696-27272816 1.0000 120 chr3L:14969901-14970021 1.0000 120 chr2L:2758844-2758964 1.0000 120 chr2R:19144916-19145036 1.0000 120 chrX:14103403-14103523 1.0000 120 chr3L:742275-742395 1.0000 120 chr2L:9431670-9431790 1.0000 120 chr2L:11106354-11106474 1.0000 120 chrX:14753629-14753749 1.0000 120 chr3R:26884736-26884856 1.0000 120 chr2R:18160911-18161031 1.0000 120 chr2L:6691089-6691209 1.0000 120 chr3R:17798023-17798143 1.0000 120 chr2R:9586458-9586578 1.0000 120 chr2R:19802525-19802645 1.0000 120 chr3L:15722922-15723042 1.0000 120 chr3L:1639952-1640072 1.0000 120 chr3R:31686573-31686693 1.0000 120 chr3R:7129837-7129957 1.0000 120 chr2L:5055546-5055666 1.0000 120 chr2R:15033892-15034012 1.0000 120 chr3L:16005530-16005650 1.0000 120 chr2L:6456523-6456643 1.0000 120 chr2L:14491949-14492069 1.0000 120 chr2R:8043108-8043228 1.0000 120 chr3R:7164730-7164850 1.0000 120 chr3R:28860412-28860532 1.0000 120 chr3R:5374201-5374321 1.0000 120 chr2L:5049978-5050098 1.0000 120 chr2R:17143996-17144116 1.0000 120 chr3L:6955087-6955207 1.0000 120 chrX:2075541-2075661 1.0000 120 chrX:6824767-6824887 1.0000 120 chr3R:4338083-4338203 1.0000 120 chrX:9158823-9158943 1.0000 120 chr2R:16347185-16347305 1.0000 120 chr3R:20616799-20616919 1.0000 120 chrX:1880809-1880929 1.0000 120 chr2R:15883842-15883962 1.0000 120 chrX:13606495-13606615 1.0000 120 chr2L:3169557-3169677 1.0000 120 chr3R:9587255-9587375 1.0000 120 chrX:18085959-18086079 1.0000 120 chr3R:29263845-29263965 1.0000 120 chr3L:13113561-13113681 1.0000 120 chr3R:4853641-4853761 1.0000 120 chr3L:9889273-9889393 1.0000 120 chr3L:7980708-7980828 1.0000 120 chr2R:23707419-23707539 1.0000 120 chr3R:13797870-13797990 1.0000 120 chr2L:13827454-13827574 1.0000 120 chr3R:21108637-21108757 1.0000 120 chr3R:7087418-7087538 1.0000 120 chr3R:28606257-28606377 1.0000 120 chr3L:22728441-22728561 1.0000 120 chrX:18774197-18774317 1.0000 120 chr2R:17758407-17758527 1.0000 120 chr3L:5139761-5139881 1.0000 120 chr3L:2878930-2879050 1.0000 120 chr2R:10260988-10261108 1.0000 120 chr3L:15968408-15968528 1.0000 120 chr3R:24625282-24625402 1.0000 120 chr3L:21432851-21432971 1.0000 120 chr2L:7872828-7872948 1.0000 120 chr2L:13373491-13373611 1.0000 120 chr2L:5278192-5278312 1.0000 120 chrX:2068308-2068428 1.0000 120 chr3L:16447626-16447746 1.0000 120 chrX:14200469-14200589 1.0000 120 chr3R:21390019-21390139 1.0000 120 chr3L:1802576-1802696 1.0000 120 chr3R:27937551-27937671 1.0000 120 chr2R:20112189-20112309 1.0000 120 chr3L:841120-841240 1.0000 120 chr2L:12435315-12435435 1.0000 120 chr3R:15340985-15341105 1.0000 120 chr2R:9131418-9131538 1.0000 120 chr2L:14598771-14598891 1.0000 120 chr3L:541095-541215 1.0000 120 chr2L:13230087-13230207 1.0000 120 chr3R:29304636-29304756 1.0000 120 chr3R:17113400-17113520 1.0000 120 chr3R:23773306-23773426 1.0000 120 chr3R:14574729-14574849 1.0000 120 chr2L:4226594-4226714 1.0000 120 chrX:15736846-15736966 1.0000 120 chr2R:23972649-23972769 1.0000 120 chr2L:6273913-6274033 1.0000 120 chr3L:3095682-3095802 1.0000 120 chr3L:20242780-20242900 1.0000 120 chr2R:17475734-17475854 1.0000 120 chr2L:9252787-9252907 1.0000 120 chrX:14025467-14025587 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Suvar3-9/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Suvar3-9.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.228 C 0.274 G 0.274 T 0.224 Background letter frequencies (from file dataset with add-one prior applied): A 0.228 C 0.274 G 0.274 T 0.224 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WGSWGSWG MEME-1 width = 8 sites = 91 llr = 641 E-value = 3.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGSWGSWG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5::6:15: pos.-specific C ::6::5:: probability G :a4:a3:a matrix T 5::4:15: bits 2.2 1.9 * * * 1.7 * * * 1.5 * * * Relative 1.3 * ** * Entropy 1.1 ** ** ** (10.2 bits) 0.9 ***** ** 0.6 ***** ** 0.4 ***** ** 0.2 ******** 0.0 -------- Multilevel TGCAGCTG consensus A GT GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSWGSWG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:18774197-18774317 61 3.57e-05 GCAGCGGCGG AGCAGCTG CTGTTCGGCC chr3R:7087418-7087538 81 3.57e-05 TTCCACCCCG AGCAGCTG ATCACTGGTA chr3L:7980708-7980828 66 3.57e-05 CAGAACCGGG TGCAGCTG CTCGAATTAT chr3R:27921695-27921815 69 3.57e-05 CTTCAGCTGC TGCAGCTG GAGCTGCGCC chr3R:29219106-29219226 58 3.57e-05 GAAAAggggc tgcagctg gagttggagt chr2R:20114061-20114181 110 3.57e-05 CCCTGGAAAC TGCAGCTG CTT chrX:2585160-2585280 55 3.57e-05 CATTCTGGCC AGCAGCTG GGCTCTTCTT chrX:17635613-17635733 98 3.57e-05 GCTTGTTCCT TGCAGCTG GTACATCCAC chr3R:16828974-16829094 90 3.57e-05 GCGTTGTATT TGCAGCTG TGGCACAAgt chrX:7105187-7105307 7 3.57e-05 ACGCAG TGCAGCTG GAGGATTGGA chrX:4636535-4636655 52 3.57e-05 ACGCACAGGA TGCAGCTG TCGCGTCGAC chr2R:21482277-21482397 37 3.57e-05 cagcggcagc agcagctg cagGTGCAAA chr3L:5139761-5139881 24 7.19e-05 ACCGTGAAGG AGCAGCAG CGGGAGAATG chr3R:7164730-7164850 28 7.19e-05 cgcagaacaa agcagcag catcagcagc chr2L:13228133-13228253 84 7.19e-05 cagcagcaac agcagcag cTCATCGAAC chr2L:17473742-17473862 38 7.19e-05 CACCACACAG AGCAGCAG CACTGCGAGC chr3R:26000115-26000235 45 7.19e-05 CAAAAGATGA AGCAGCAG CGTCAGCACA chrX:13722555-13722675 58 7.19e-05 TTCGAGCAAT TGCAGCAG ACGCGAGCAC chr3R:23686900-23687020 79 7.19e-05 AGGGATGCAC TGCAGCAG GGGGATGTGC chrX:21350707-21350827 23 7.19e-05 caacaacagc agcagcag catcgcagca chr2L:6273913-6274033 93 1.08e-04 CACAGTCGTA TGGAGCTG GCGAGATGGA chrX:18085959-18086079 39 1.08e-04 CGTCATCCGG AGGAGCTG GAAAACTGCC chr2L:4442596-4442716 5 1.08e-04 gaga aggagctg cagaaggCGT chr3R:27606635-27606755 32 1.08e-04 CTTACTGGAC TGGAGCTG ATCTTTGGGG chr2L:19051106-19051226 59 1.08e-04 CAATAGGCGA TGGAGCTG CCCACTCCAC chr3L:21558241-21558361 57 1.08e-04 GCTGCCATAG AGGAGCTG Ctgtggatgt chr2R:9131418-9131538 24 1.43e-04 CAACGCCCAC TGCTGCTG CGAACTGGCA chr2L:14273956-14274076 60 1.43e-04 GTGCTTCAAA AGCTGCTG ACCGATGGTG chr3R:24226527-24226647 12 1.43e-04 GCGTTTGTGA AGCTGCTG CACTAGCTCC chr3L:5768482-5768602 82 1.43e-04 TTGCCCACAT AGCTGCTG CTGTTGGCGT chrX:2731864-2731984 21 1.43e-04 TCggaggtac tgctgctg gtggtggagg chr2L:13230087-13230207 102 2.15e-04 CGAAGCCCCA AGGAGCAG ATGCGCCGCG chr2L:12435315-12435435 41 2.15e-04 CGCCTTCAGC AGGAGCAG CGGCGGCGGA chr2R:9591040-9591160 71 2.15e-04 GCCAGCAAGC AGGAGCAG GAGGAGGCGT chr3R:8001802-8001922 9 2.15e-04 TCCATCAG TGGAGCAG TTCCGAGAAC chrX:7891296-7891416 104 2.15e-04 CGCACCTTGT AGCAGGTG CCGAAGGAT chr3R:15340985-15341105 80 2.50e-04 AAGTTGAGGC AGCTGCAG GCGGAACTGG chr2R:10811570-10811690 87 2.50e-04 CTAGTGGCCC TGCTGCAG CGCTATACAA chr3R:10815577-10815697 85 2.50e-04 TCAGCGGATC AGCTGCAG CCACCGCCCA chr2R:13556030-13556150 106 2.50e-04 ATGGACTCCA AGCTGCAG AATGCCC chrX:795885-796005 20 2.50e-04 GCCGGAGTTC TGCTGCAG GTCAAGCAGC chr3R:4853641-4853761 84 2.86e-04 TCCAGCGTTA AGCAGGAG ATGCAGTGCC chr2L:5055546-5055666 80 2.86e-04 ATGCGCAATT TGCAGGAG GCCAGCGAGG chr2L:6691089-6691209 56 2.86e-04 Aatgcgatcg agcaggag gatgaaatgg chr3R:14574729-14574849 101 3.22e-04 CGCGGAAACG TGGTGCTG TATCCACTGG chrX:2040851-2040971 78 3.22e-04 GCTTGTGATG TGGTGCTG GGTATATTGG chr2R:8638220-8638340 70 3.22e-04 aaggtgatgg tggtgctg CACAGGAGCC chr3R:21390019-21390139 12 3.87e-04 CTGCCACAGA TGCAGATG CCATTCCCGT chr2L:11106354-11106474 71 3.87e-04 ACGGAGTTGG AGGAGGTG GAAGCTGGGA chr3L:21286462-21286582 112 3.87e-04 GTGGCGGAGG AGGAGGTG C chr3R:6986699-6986819 101 3.87e-04 AGCCGGCAGA TGCAGATG TAGTTGCCGA chr2R:17475734-17475854 77 4.87e-04 CTGGCTCTTC TGCTGGTG GAGTTAGAGG chrX:15736846-15736966 94 4.87e-04 GCTTTCATGA TGCAGTTG GGCACCACAT chr2L:6456523-6456643 42 4.87e-04 GGCCAGCGCA AGCTGGTG TCCACTGGGC chr3R:7129837-7129957 64 4.87e-04 TTGCCTTCCA AGCAGTTG ACCCGGGTTC chrX:14103403-14103523 52 4.87e-04 TTCTTGTTAT AGCTGGTG TTAAATTACG chr3R:26724790-26724910 49 4.87e-04 CTGCGGGCGC TGCAGTTG CTCCTACCCA chr2R:13552145-13552265 16 4.87e-04 CCGAGGTGGA TGCAGTTG CTCCATCCAC chr3R:18984462-18984582 63 4.87e-04 GTCCAGCGCG TGGTGCAG CCCGTCAATG chr3R:28819342-28819462 52 4.87e-04 TCCGTGGGCC AGCAGTTG GCGTGGTAGC chr3L:22728441-22728561 49 5.53e-04 AACTGCATCA TGCAGAAG CCAGTGCCCG chr3R:28606257-28606377 23 5.53e-04 CAGGAAAATC TGGAGGAG TGTATCACCC chr2R:23707419-23707539 93 5.53e-04 CTCAGCGACG AGCAGAAG CGCCGTGAGT chr3L:2263114-2263234 35 5.53e-04 GAGGTGGCGG AGGAGGAG GCGGCTTCCA chr3L:15620105-15620225 30 5.53e-04 ATggaagaag aggaggag gatgaggaag chrX:20490630-20490750 93 5.53e-04 TTGGGCTGGA TGGAGGAG GCGGCCAGGG chr2L:573979-574099 50 5.53e-04 CTTCGAGTCC TGCAGAAG ACCCACTGCC chr2R:13968492-13968612 20 6.18e-04 TCGCCACCGC AGCTGGAG GTCAGTGGAA chr2R:23555765-23555885 36 6.18e-04 CACCGAGGAG AGCAGTAG GATGGAGTCG chr2R:15890505-15890625 46 6.18e-04 CAGTAGCCGC AGCTGGAG CCGGAAGGGT chr2L:19197439-19197559 52 6.18e-04 CTACCATGGA TGCAGTAG CTCCAGCTTC chr3L:749848-749968 48 6.18e-04 CTGCAGACCG AGCTGGAG ACGCACCCCG chr2R:19278105-19278225 19 6.48e-04 GAGCGTGACC AGGAGATG GGCGGCCCAA chr2R:20112189-20112309 96 7.41e-04 GGAAAGACCC TGGAGTTG CACGGCCAGT chrX:6824767-6824887 92 7.41e-04 TGTGGTCACC TGGTGGTG GTAAGTCGCA chr3R:5083484-5083604 18 7.41e-04 AGTCGGTCGG TGGTGGTG GGAAGTGTGA chr3R:27937551-27937671 21 8.00e-04 CGAACCGGAG TGCTGTTG TTGGTGTCCC chr3R:21108637-21108757 10 8.00e-04 CCGCTGCCA TGGAGAAG CAAAGCCACA chr2R:15883842-15883962 59 8.00e-04 TTTCAGTAAG TGGAGAAG CCAAAAAATA chr3L:14975455-14975575 3 8.00e-04 CG AGGAGAAG GAGGCCGAGT chr3L:2773633-2773753 22 8.00e-04 AATCGCTTCC TGCTGTTG TCCAGGGGCA chrX:13606495-13606615 26 8.95e-04 CTGGGCTGCC AGGTGGAG TTCTCGCATC chrX:1880809-1880929 82 8.95e-04 AAGCGGATCG AGGTGGAG GCATGGAACA chr2R:18160911-18161031 33 8.95e-04 AGCTGAGCGG AGGTggag atcgggagtt chr3L:832912-833032 28 8.95e-04 TACAGATACA TGGTGGAG CACTACACTC chr3L:19599306-19599426 11 8.95e-04 GTGTCCATCA AGCTGAAG AGGATTGTAC chr2L:708207-708327 12 8.95e-04 GGCTTACGCA TGGTGGAG GCATTTCCAT chr3L:16005530-16005650 72 9.54e-04 TTCCACGTCC TGGTGATG CCAACAGGAA chr3R:22718003-22718123 109 9.54e-04 CATCCCTTAT AGGTGATG CCTT chrX:2468073-2468193 100 9.54e-04 acggcgatga tggtgatg atgctgCTCG chr2R:23972649-23972769 45 9.82e-04 CAGCACCTGA TGGTGTTG GGCAGCATAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSWGSWG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:18774197-18774317 3.6e-05 60_[+1]_52 chr3R:7087418-7087538 3.6e-05 80_[+1]_32 chr3L:7980708-7980828 3.6e-05 65_[+1]_47 chr3R:27921695-27921815 3.6e-05 68_[+1]_44 chr3R:29219106-29219226 3.6e-05 57_[+1]_55 chr2R:20114061-20114181 3.6e-05 109_[+1]_3 chrX:2585160-2585280 3.6e-05 54_[+1]_58 chrX:17635613-17635733 3.6e-05 97_[+1]_15 chr3R:16828974-16829094 3.6e-05 89_[+1]_23 chrX:7105187-7105307 3.6e-05 6_[+1]_106 chrX:4636535-4636655 3.6e-05 51_[+1]_61 chr2R:21482277-21482397 3.6e-05 36_[+1]_76 chr3L:5139761-5139881 7.2e-05 23_[+1]_89 chr3R:7164730-7164850 7.2e-05 27_[+1]_85 chr2L:13228133-13228253 7.2e-05 83_[+1]_29 chr2L:17473742-17473862 7.2e-05 37_[+1]_75 chr3R:26000115-26000235 7.2e-05 44_[+1]_68 chrX:13722555-13722675 7.2e-05 57_[+1]_55 chr3R:23686900-23687020 7.2e-05 78_[+1]_34 chrX:21350707-21350827 7.2e-05 22_[+1]_90 chr2L:6273913-6274033 0.00011 92_[+1]_20 chrX:18085959-18086079 0.00011 38_[+1]_74 chr2L:4442596-4442716 0.00011 4_[+1]_108 chr3R:27606635-27606755 0.00011 31_[+1]_81 chr2L:19051106-19051226 0.00011 58_[+1]_54 chr3L:21558241-21558361 0.00011 56_[+1]_56 chr2R:9131418-9131538 0.00014 23_[+1]_89 chr2L:14273956-14274076 0.00014 59_[+1]_53 chr3R:24226527-24226647 0.00014 11_[+1]_101 chr3L:5768482-5768602 0.00014 81_[+1]_31 chrX:2731864-2731984 0.00014 20_[+1]_92 chr2L:13230087-13230207 0.00021 101_[+1]_11 chr2L:12435315-12435435 0.00021 40_[+1]_72 chr2R:9591040-9591160 0.00021 70_[+1]_42 chr3R:8001802-8001922 0.00021 8_[+1]_104 chrX:7891296-7891416 0.00021 103_[+1]_9 chr3R:15340985-15341105 0.00025 79_[+1]_33 chr2R:10811570-10811690 0.00025 86_[+1]_26 chr3R:10815577-10815697 0.00025 84_[+1]_28 chr2R:13556030-13556150 0.00025 105_[+1]_7 chrX:795885-796005 0.00025 19_[+1]_93 chr3R:4853641-4853761 0.00029 83_[+1]_29 chr2L:5055546-5055666 0.00029 79_[+1]_33 chr2L:6691089-6691209 0.00029 55_[+1]_57 chr3R:14574729-14574849 0.00032 100_[+1]_12 chrX:2040851-2040971 0.00032 77_[+1]_35 chr2R:8638220-8638340 0.00032 69_[+1]_43 chr3R:21390019-21390139 0.00039 11_[+1]_101 chr2L:11106354-11106474 0.00039 70_[+1]_42 chr3L:21286462-21286582 0.00039 111_[+1]_1 chr3R:6986699-6986819 0.00039 100_[+1]_12 chr2R:17475734-17475854 0.00049 76_[+1]_36 chrX:15736846-15736966 0.00049 93_[+1]_19 chr2L:6456523-6456643 0.00049 41_[+1]_71 chr3R:7129837-7129957 0.00049 63_[+1]_49 chrX:14103403-14103523 0.00049 51_[+1]_61 chr3R:26724790-26724910 0.00049 48_[+1]_64 chr2R:13552145-13552265 0.00049 15_[+1]_97 chr3R:18984462-18984582 0.00049 62_[+1]_50 chr3R:28819342-28819462 0.00049 51_[+1]_61 chr3L:22728441-22728561 0.00055 48_[+1]_64 chr3R:28606257-28606377 0.00055 22_[+1]_90 chr2R:23707419-23707539 0.00055 92_[+1]_20 chr3L:2263114-2263234 0.00055 34_[+1]_78 chr3L:15620105-15620225 0.00055 29_[+1]_83 chrX:20490630-20490750 0.00055 92_[+1]_20 chr2L:573979-574099 0.00055 49_[+1]_63 chr2R:13968492-13968612 0.00062 19_[+1]_93 chr2R:23555765-23555885 0.00062 35_[+1]_77 chr2R:15890505-15890625 0.00062 45_[+1]_67 chr2L:19197439-19197559 0.00062 51_[+1]_61 chr3L:749848-749968 0.00062 47_[+1]_65 chr2R:19278105-19278225 0.00065 18_[+1]_94 chr2R:20112189-20112309 0.00074 95_[+1]_17 chrX:6824767-6824887 0.00074 91_[+1]_21 chr3R:5083484-5083604 0.00074 17_[+1]_95 chr3R:27937551-27937671 0.0008 20_[+1]_92 chr3R:21108637-21108757 0.0008 9_[+1]_103 chr2R:15883842-15883962 0.0008 58_[+1]_54 chr3L:14975455-14975575 0.0008 2_[+1]_110 chr3L:2773633-2773753 0.0008 21_[+1]_91 chrX:13606495-13606615 0.0009 25_[+1]_87 chrX:1880809-1880929 0.0009 81_[+1]_31 chr2R:18160911-18161031 0.0009 32_[+1]_80 chr3L:832912-833032 0.0009 27_[+1]_85 chr3L:19599306-19599426 0.0009 10_[+1]_102 chr2L:708207-708327 0.0009 11_[+1]_101 chr3L:16005530-16005650 0.00095 71_[+1]_41 chr3R:22718003-22718123 0.00095 108_[+1]_4 chrX:2468073-2468193 0.00095 99_[+1]_13 chr2R:23972649-23972769 0.00098 44_[+1]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSWGSWG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGSWGSWG width=8 seqs=91 chrX:18774197-18774317 ( 61) AGCAGCTG 1 chr3R:7087418-7087538 ( 81) AGCAGCTG 1 chr3L:7980708-7980828 ( 66) TGCAGCTG 1 chr3R:27921695-27921815 ( 69) TGCAGCTG 1 chr3R:29219106-29219226 ( 58) TGCAGCTG 1 chr2R:20114061-20114181 ( 110) TGCAGCTG 1 chrX:2585160-2585280 ( 55) AGCAGCTG 1 chrX:17635613-17635733 ( 98) TGCAGCTG 1 chr3R:16828974-16829094 ( 90) TGCAGCTG 1 chrX:7105187-7105307 ( 7) TGCAGCTG 1 chrX:4636535-4636655 ( 52) TGCAGCTG 1 chr2R:21482277-21482397 ( 37) AGCAGCTG 1 chr3L:5139761-5139881 ( 24) AGCAGCAG 1 chr3R:7164730-7164850 ( 28) AGCAGCAG 1 chr2L:13228133-13228253 ( 84) AGCAGCAG 1 chr2L:17473742-17473862 ( 38) AGCAGCAG 1 chr3R:26000115-26000235 ( 45) AGCAGCAG 1 chrX:13722555-13722675 ( 58) TGCAGCAG 1 chr3R:23686900-23687020 ( 79) TGCAGCAG 1 chrX:21350707-21350827 ( 23) AGCAGCAG 1 chr2L:6273913-6274033 ( 93) TGGAGCTG 1 chrX:18085959-18086079 ( 39) AGGAGCTG 1 chr2L:4442596-4442716 ( 5) AGGAGCTG 1 chr3R:27606635-27606755 ( 32) TGGAGCTG 1 chr2L:19051106-19051226 ( 59) TGGAGCTG 1 chr3L:21558241-21558361 ( 57) AGGAGCTG 1 chr2R:9131418-9131538 ( 24) TGCTGCTG 1 chr2L:14273956-14274076 ( 60) AGCTGCTG 1 chr3R:24226527-24226647 ( 12) AGCTGCTG 1 chr3L:5768482-5768602 ( 82) AGCTGCTG 1 chrX:2731864-2731984 ( 21) TGCTGCTG 1 chr2L:13230087-13230207 ( 102) AGGAGCAG 1 chr2L:12435315-12435435 ( 41) AGGAGCAG 1 chr2R:9591040-9591160 ( 71) AGGAGCAG 1 chr3R:8001802-8001922 ( 9) TGGAGCAG 1 chrX:7891296-7891416 ( 104) AGCAGGTG 1 chr3R:15340985-15341105 ( 80) AGCTGCAG 1 chr2R:10811570-10811690 ( 87) TGCTGCAG 1 chr3R:10815577-10815697 ( 85) AGCTGCAG 1 chr2R:13556030-13556150 ( 106) AGCTGCAG 1 chrX:795885-796005 ( 20) TGCTGCAG 1 chr3R:4853641-4853761 ( 84) AGCAGGAG 1 chr2L:5055546-5055666 ( 80) TGCAGGAG 1 chr2L:6691089-6691209 ( 56) AGCAGGAG 1 chr3R:14574729-14574849 ( 101) TGGTGCTG 1 chrX:2040851-2040971 ( 78) TGGTGCTG 1 chr2R:8638220-8638340 ( 70) TGGTGCTG 1 chr3R:21390019-21390139 ( 12) TGCAGATG 1 chr2L:11106354-11106474 ( 71) AGGAGGTG 1 chr3L:21286462-21286582 ( 112) AGGAGGTG 1 chr3R:6986699-6986819 ( 101) TGCAGATG 1 chr2R:17475734-17475854 ( 77) TGCTGGTG 1 chrX:15736846-15736966 ( 94) TGCAGTTG 1 chr2L:6456523-6456643 ( 42) AGCTGGTG 1 chr3R:7129837-7129957 ( 64) AGCAGTTG 1 chrX:14103403-14103523 ( 52) AGCTGGTG 1 chr3R:26724790-26724910 ( 49) TGCAGTTG 1 chr2R:13552145-13552265 ( 16) TGCAGTTG 1 chr3R:18984462-18984582 ( 63) TGGTGCAG 1 chr3R:28819342-28819462 ( 52) AGCAGTTG 1 chr3L:22728441-22728561 ( 49) TGCAGAAG 1 chr3R:28606257-28606377 ( 23) TGGAGGAG 1 chr2R:23707419-23707539 ( 93) AGCAGAAG 1 chr3L:2263114-2263234 ( 35) AGGAGGAG 1 chr3L:15620105-15620225 ( 30) AGGAGGAG 1 chrX:20490630-20490750 ( 93) TGGAGGAG 1 chr2L:573979-574099 ( 50) TGCAGAAG 1 chr2R:13968492-13968612 ( 20) AGCTGGAG 1 chr2R:23555765-23555885 ( 36) AGCAGTAG 1 chr2R:15890505-15890625 ( 46) AGCTGGAG 1 chr2L:19197439-19197559 ( 52) TGCAGTAG 1 chr3L:749848-749968 ( 48) AGCTGGAG 1 chr2R:19278105-19278225 ( 19) AGGAGATG 1 chr2R:20112189-20112309 ( 96) TGGAGTTG 1 chrX:6824767-6824887 ( 92) TGGTGGTG 1 chr3R:5083484-5083604 ( 18) TGGTGGTG 1 chr3R:27937551-27937671 ( 21) TGCTGTTG 1 chr3R:21108637-21108757 ( 10) TGGAGAAG 1 chr2R:15883842-15883962 ( 59) TGGAGAAG 1 chr3L:14975455-14975575 ( 3) AGGAGAAG 1 chr3L:2773633-2773753 ( 22) TGCTGTTG 1 chrX:13606495-13606615 ( 26) AGGTGGAG 1 chrX:1880809-1880929 ( 82) AGGTGGAG 1 chr2R:18160911-18161031 ( 33) AGGTGGAG 1 chr3L:832912-833032 ( 28) TGGTGGAG 1 chr3L:19599306-19599426 ( 11) AGCTGAAG 1 chr2L:708207-708327 ( 12) TGGTGGAG 1 chr3L:16005530-16005650 ( 72) TGGTGATG 1 chr3R:22718003-22718123 ( 109) AGGTGATG 1 chrX:2468073-2468193 ( 100) TGGTGATG 1 chr2R:23972649-23972769 ( 45) TGGTGTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSWGSWG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1641 E= 3.3e-001 111 -1315 -1315 117 -1315 -1315 187 -1315 -1315 114 53 -1315 146 -1315 -1315 74 -1315 -1315 187 -1315 -68 82 -11 -89 102 -1315 -1315 126 -1315 -1315 187 -1315 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSWGSWG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 91 E= 3.3e-001 0.494505 0.000000 0.000000 0.505495 0.000000 0.000000 1.000000 0.000000 0.000000 0.604396 0.395604 0.000000 0.626374 0.000000 0.000000 0.373626 0.000000 0.000000 1.000000 0.000000 0.142857 0.483516 0.252747 0.120879 0.461538 0.000000 0.000000 0.538462 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSWGSWG MEME-1 regular expression -------------------------------------------------------------------------------- [TA]G[CG][AT]G[CG][TA]G -------------------------------------------------------------------------------- Time 7.55 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTGCRTC MEME-2 width = 8 sites = 27 llr = 242 E-value = 3.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGCRTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A a::::5:: pos.-specific C :3::a2:a probability G :7:8:3:: matrix T ::a2::a: bits 2.2 * * * 1.9 * * * ** 1.7 * * * ** 1.5 * * * ** Relative 1.3 * *** ** Entropy 1.1 ***** ** (12.9 bits) 0.9 ***** ** 0.6 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGTGCATC consensus C G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCRTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2758844-2758964 67 1.47e-05 TCGCGGACGC AGTGCATC CGCTAGGCTG chr2R:18421568-18421688 9 1.47e-05 ACGGACGC AGTGCATC ATTGCAATTC chr3R:29130680-29130800 34 1.47e-05 CGGAAGAGGT AGTGCATC ACATGCACGA chr2R:13556030-13556150 4 1.47e-05 TGC AGTGCATC CAGGCTAGAG chrX:7105187-7105307 47 1.47e-05 GAGTGGAGCA AGTGCATC CGAGACGGAC chr2R:21032103-21032223 94 1.47e-05 AGTGCGATGC AGTGCATC CCACCGTGAA chr2R:21482277-21482397 83 1.47e-05 CGACGGAGCA AGTGCATC GATCAGTGGA chr3L:13113561-13113681 66 3.24e-05 ATCAATTTCA AGTGCGTC ACATTTGGAC chrX:2585160-2585280 5 3.24e-05 TGGT AGTGCGTC AGGTTGTAGT chr3R:15218612-15218732 2 3.24e-05 A AGTGCGTC GCCACTCGCA chr3R:28819342-28819462 29 3.24e-05 AGATGGCCCC AGTGCGTC CCGCATCCGT chr3L:7381086-7381206 54 3.24e-05 GCGTCGAGGT AGTGCGTC CGGGTCTCCT chr2R:20112189-20112309 7 5.00e-05 GCAGCG AGTGCCTC CAAATGCATT chr3R:4853641-4853761 96 5.00e-05 CAGGAGATGC AGTGCCTC TGGATAGACC chr3L:15721216-15721336 56 5.00e-05 CAATGCCTTC AGTGCCTC CACCACGTCC chr3R:21390019-21390139 95 6.47e-05 CAGCTTTGTG ACTGCATC CTCGGCGTCC chrX:18774197-18774317 30 6.47e-05 AATACGGTGC ACTGCATC ATCCATGGCG chr3L:22728441-22728561 40 6.47e-05 AATGATACCA ACTGCATC ATGCAGAAGC chr3L:12719786-12719906 79 7.68e-05 TCTGGCCATC AGTTCATC CATTCGCACT chrX:7891296-7891416 40 7.68e-05 GGCCTCGTCC AGTTCATC GTAGTTCATT chrX:19701434-19701554 68 7.68e-05 CAATCGATTC AGTTCATC ATTGGGCACC chr3L:21432851-21432971 19 9.44e-05 AAATAGATGA ACTGCGTC CGCCGGCTGG chr2L:13228133-13228253 25 9.44e-05 CACAGGAGCA ACTGCGTC GGGATCGCAA chr3L:4003636-4003756 78 1.09e-04 CAGTTGATGC AGTTCGTC AACGGGGAAC chr2L:573979-574099 62 1.27e-04 CAGAAGACCC ACTGCCTC CGCGTTGCTT chr2R:19278105-19278225 76 1.27e-04 GGACAGACGT ACTGCCTC CGCTGGAACA chr3L:21635698-21635818 44 1.41e-04 ACAACGCGCA AGTTCCTC ACAGCTGTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCRTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2758844-2758964 1.5e-05 66_[+2]_46 chr2R:18421568-18421688 1.5e-05 8_[+2]_104 chr3R:29130680-29130800 1.5e-05 33_[+2]_79 chr2R:13556030-13556150 1.5e-05 3_[+2]_109 chrX:7105187-7105307 1.5e-05 46_[+2]_66 chr2R:21032103-21032223 1.5e-05 93_[+2]_19 chr2R:21482277-21482397 1.5e-05 82_[+2]_30 chr3L:13113561-13113681 3.2e-05 65_[+2]_47 chrX:2585160-2585280 3.2e-05 4_[+2]_108 chr3R:15218612-15218732 3.2e-05 1_[+2]_111 chr3R:28819342-28819462 3.2e-05 28_[+2]_84 chr3L:7381086-7381206 3.2e-05 53_[+2]_59 chr2R:20112189-20112309 5e-05 6_[+2]_106 chr3R:4853641-4853761 5e-05 95_[+2]_17 chr3L:15721216-15721336 5e-05 55_[+2]_57 chr3R:21390019-21390139 6.5e-05 94_[+2]_18 chrX:18774197-18774317 6.5e-05 29_[+2]_83 chr3L:22728441-22728561 6.5e-05 39_[+2]_73 chr3L:12719786-12719906 7.7e-05 78_[+2]_34 chrX:7891296-7891416 7.7e-05 39_[+2]_73 chrX:19701434-19701554 7.7e-05 67_[+2]_45 chr3L:21432851-21432971 9.4e-05 18_[+2]_94 chr2L:13228133-13228253 9.4e-05 24_[+2]_88 chr3L:4003636-4003756 0.00011 77_[+2]_35 chr2L:573979-574099 0.00013 61_[+2]_51 chr2R:19278105-19278225 0.00013 75_[+2]_37 chr3L:21635698-21635818 0.00014 43_[+2]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCRTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGCRTC width=8 seqs=27 chr2L:2758844-2758964 ( 67) AGTGCATC 1 chr2R:18421568-18421688 ( 9) AGTGCATC 1 chr3R:29130680-29130800 ( 34) AGTGCATC 1 chr2R:13556030-13556150 ( 4) AGTGCATC 1 chrX:7105187-7105307 ( 47) AGTGCATC 1 chr2R:21032103-21032223 ( 94) AGTGCATC 1 chr2R:21482277-21482397 ( 83) AGTGCATC 1 chr3L:13113561-13113681 ( 66) AGTGCGTC 1 chrX:2585160-2585280 ( 5) AGTGCGTC 1 chr3R:15218612-15218732 ( 2) AGTGCGTC 1 chr3R:28819342-28819462 ( 29) AGTGCGTC 1 chr3L:7381086-7381206 ( 54) AGTGCGTC 1 chr2R:20112189-20112309 ( 7) AGTGCCTC 1 chr3R:4853641-4853761 ( 96) AGTGCCTC 1 chr3L:15721216-15721336 ( 56) AGTGCCTC 1 chr3R:21390019-21390139 ( 95) ACTGCATC 1 chrX:18774197-18774317 ( 30) ACTGCATC 1 chr3L:22728441-22728561 ( 40) ACTGCATC 1 chr3L:12719786-12719906 ( 79) AGTTCATC 1 chrX:7891296-7891416 ( 40) AGTTCATC 1 chrX:19701434-19701554 ( 68) AGTTCATC 1 chr3L:21432851-21432971 ( 19) ACTGCGTC 1 chr2L:13228133-13228253 ( 25) ACTGCGTC 1 chr3L:4003636-4003756 ( 78) AGTTCGTC 1 chr2L:573979-574099 ( 62) ACTGCCTC 1 chr2R:19278105-19278225 ( 76) ACTGCCTC 1 chr3L:21635698-21635818 ( 44) AGTTCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCRTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5992 E= 3.7e+002 213 -1140 -1140 -1140 -1140 -8 144 -1140 -1140 -1140 -1140 216 -1140 -1140 157 -28 -1140 187 -1140 -1140 108 -30 12 -1140 -1140 -1140 -1140 216 -1140 187 -1140 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCRTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 3.7e+002 1.000000 0.000000 0.000000 0.000000 0.000000 0.259259 0.740741 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.814815 0.185185 0.000000 1.000000 0.000000 0.000000 0.481481 0.222222 0.296296 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCRTC MEME-2 regular expression -------------------------------------------------------------------------------- A[GC]TGC[AGC]TC -------------------------------------------------------------------------------- Time 13.73 secs. ******************************************************************************** ******************************************************************************** MOTIF TWTTTTTT MEME-3 width = 8 sites = 10 llr = 106 E-value = 3.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TWTTTTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :6:::::: pos.-specific C :::::::: probability G 3::::::: matrix T 74aaaaaa bits 2.2 ****** 1.9 ****** 1.7 ****** 1.5 ****** Relative 1.3 * ****** Entropy 1.1 ******** (15.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATTTTTT consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWTTTTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14025467-14025587 5 6.45e-06 GAAA TATTTTTT AAGCATTATA chr2R:17475734-17475854 2 6.45e-06 T TATTTTTT GCAGCGCTTC chr2L:7872828-7872948 99 6.45e-06 GCAAAATAAC TATTTTTT TAATTATTTT chr3R:7129837-7129957 111 6.45e-06 TCACTTTTTG TATTTTTT TC chr2L:5278192-5278312 71 1.28e-05 TCACTTCGCT TTTTTTTT CTTGGGGGGA chr2R:18160911-18161031 4 1.28e-05 ACT TTTTTTTT TGTATGCCGT chr2L:6215632-6215752 99 1.28e-05 AAATTCAGTT TTTTTTTT TTCAAGAAGG chr3R:5374201-5374321 42 2.07e-05 TTCGCAAACG GATTTTTT CGCTTCTGGG chrX:17635613-17635733 29 2.07e-05 CCTCTATAAC GATTTTTT TGCCATTTTT chr3R:26884736-26884856 42 2.84e-05 TCCTCCCCAG GTTTTTTT CCCTGGTAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWTTTTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14025467-14025587 6.5e-06 4_[+3]_108 chr2R:17475734-17475854 6.5e-06 1_[+3]_111 chr2L:7872828-7872948 6.5e-06 98_[+3]_14 chr3R:7129837-7129957 6.5e-06 110_[+3]_2 chr2L:5278192-5278312 1.3e-05 70_[+3]_42 chr2R:18160911-18161031 1.3e-05 3_[+3]_109 chr2L:6215632-6215752 1.3e-05 98_[+3]_14 chr3R:5374201-5374321 2.1e-05 41_[+3]_71 chrX:17635613-17635733 2.1e-05 28_[+3]_84 chr3R:26884736-26884856 2.8e-05 41_[+3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWTTTTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TWTTTTTT width=8 seqs=10 chrX:14025467-14025587 ( 5) TATTTTTT 1 chr2R:17475734-17475854 ( 2) TATTTTTT 1 chr2L:7872828-7872948 ( 99) TATTTTTT 1 chr3R:7129837-7129957 ( 111) TATTTTTT 1 chr2L:5278192-5278312 ( 71) TTTTTTTT 1 chr2R:18160911-18161031 ( 4) TTTTTTTT 1 chr2L:6215632-6215752 ( 99) TTTTTTTT 1 chr3R:5374201-5374321 ( 42) GATTTTTT 1 chrX:17635613-17635733 ( 29) GATTTTTT 1 chr3R:26884736-26884856 ( 42) GTTTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWTTTTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 3.0e+003 -997 -997 13 164 139 -997 -997 83 -997 -997 -997 216 -997 -997 -997 216 -997 -997 -997 216 -997 -997 -997 216 -997 -997 -997 216 -997 -997 -997 216 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWTTTTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 3.0e+003 0.000000 0.000000 0.300000 0.700000 0.600000 0.000000 0.000000 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWTTTTTT MEME-3 regular expression -------------------------------------------------------------------------------- [TG][AT]TTTTTT -------------------------------------------------------------------------------- Time 19.84 secs. ******************************************************************************** ******************************************************************************** MOTIF TTYCACTT MEME-4 width = 8 sites = 11 llr = 114 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTYCACTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C ::4a:a:: probability G ::2::::: matrix T aa5:::aa bits 2.2 ** * ** 1.9 ** ***** 1.7 ** ***** 1.5 ** ***** Relative 1.3 ** ***** Entropy 1.1 ** ***** (15.0 bits) 0.9 ** ***** 0.6 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCACTT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYCACTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:5278192-5278312 59 9.65e-06 TCAATTGCGT TTTCACTT CGCTTTTTTT chrX:14103403-14103523 88 9.65e-06 AGTCGAGCAC TTTCACTT TTCCACTGTC chr3R:27272696-27272816 90 9.65e-06 CGTCTTCATT TTTCACTT TCAGAGAGTC chr3L:832912-833032 46 9.65e-06 CACTACACTC TTTCACTT TTGTCCACGA chr2L:11214362-11214482 111 9.65e-06 GCCAGTGACT TTTCACTT TT chr3L:14969901-14970021 22 2.15e-05 GGATGCACAG TTCCACTT CTCGATGCAC chr3R:8304849-8304969 67 2.15e-05 CCAGTGTGAT TTCCACTT TGGTCGAAAA chrX:11581027-11581147 102 2.15e-05 TCAGAATGAA TTCCACTT CGATCACGCC chr3L:15254175-15254295 82 2.15e-05 TCTGAGAACT TTCCACTT CAATTAATAA chr2R:15033892-15034012 103 3.33e-05 TTCATTTACT TTGCACTT ACTTCACTCA chr3L:15722922-15723042 19 3.33e-05 CGCTGACAGC TTGCACTT TTGCAGCTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYCACTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:5278192-5278312 9.7e-06 58_[+4]_54 chrX:14103403-14103523 9.7e-06 87_[+4]_25 chr3R:27272696-27272816 9.7e-06 89_[+4]_23 chr3L:832912-833032 9.7e-06 45_[+4]_67 chr2L:11214362-11214482 9.7e-06 110_[+4]_2 chr3L:14969901-14970021 2.1e-05 21_[+4]_91 chr3R:8304849-8304969 2.1e-05 66_[+4]_46 chrX:11581027-11581147 2.1e-05 101_[+4]_11 chr3L:15254175-15254295 2.1e-05 81_[+4]_31 chr2R:15033892-15034012 3.3e-05 102_[+4]_10 chr3L:15722922-15723042 3.3e-05 18_[+4]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYCACTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTYCACTT width=8 seqs=11 chr2L:5278192-5278312 ( 59) TTTCACTT 1 chrX:14103403-14103523 ( 88) TTTCACTT 1 chr3R:27272696-27272816 ( 90) TTTCACTT 1 chr3L:832912-833032 ( 46) TTTCACTT 1 chr2L:11214362-11214482 ( 111) TTTCACTT 1 chr3L:14969901-14970021 ( 22) TTCCACTT 1 chr3R:8304849-8304969 ( 67) TTCCACTT 1 chrX:11581027-11581147 ( 102) TTCCACTT 1 chr3L:15254175-15254295 ( 82) TTCCACTT 1 chr2R:15033892-15034012 ( 103) TTGCACTT 1 chr3L:15722922-15723042 ( 19) TTGCACTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYCACTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 1.0e+004 -1010 -1010 -1010 216 -1010 -1010 -1010 216 -1010 41 -59 102 -1010 187 -1010 -1010 213 -1010 -1010 -1010 -1010 187 -1010 -1010 -1010 -1010 -1010 216 -1010 -1010 -1010 216 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYCACTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.0e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.363636 0.181818 0.454545 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYCACTT MEME-4 regular expression -------------------------------------------------------------------------------- TT[TC]CACTT -------------------------------------------------------------------------------- Time 25.96 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGGACAA MEME-5 width = 8 sites = 10 llr = 106 E-value = 7.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGGACAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 3:::a:aa pos.-specific C 7::::a:: probability G ::aa:::: matrix T :a:::::: bits 2.2 * * ** 1.9 ******* 1.7 ******* 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******** (15.2 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGGACAA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGACAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10260988-10261108 80 1.50e-05 CGAGCAGTAA CTGGACAA GAACGCAGAA chrX:1880809-1880929 107 1.50e-05 ACACGGACTT CTGGACAA AACACA chr2R:9586458-9586578 22 1.50e-05 TGCGTGCCTC CTGGACAA AGTTACGCCA chr2R:9591040-9591160 1 1.50e-05 . CTGGACAA GATTCTGCAG chr3L:16128235-16128355 62 1.50e-05 CCAAGATGGC CTGGACAA AGTTCTCCGT chr2L:11486468-11486588 41 1.50e-05 GGAGGATTCG CTGGACAA GGTTCTCCAA chr3L:13031108-13031228 31 1.50e-05 ATCCCACCAT CTGGACAA TGGACGCGGT chr3R:17645356-17645476 76 2.74e-05 TCTCGTTATT ATGGACAA ACCTGAATAA chr3L:14975455-14975575 41 2.74e-05 CAGCAACGAT ATGGACAA CATGGCCAAC chr2R:13556030-13556150 43 2.74e-05 CCTCGTTTTT ATGGACAA GACAGCGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGACAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10260988-10261108 1.5e-05 79_[+5]_33 chrX:1880809-1880929 1.5e-05 106_[+5]_6 chr2R:9586458-9586578 1.5e-05 21_[+5]_91 chr2R:9591040-9591160 1.5e-05 [+5]_112 chr3L:16128235-16128355 1.5e-05 61_[+5]_51 chr2L:11486468-11486588 1.5e-05 40_[+5]_72 chr3L:13031108-13031228 1.5e-05 30_[+5]_82 chr3R:17645356-17645476 2.7e-05 75_[+5]_37 chr3L:14975455-14975575 2.7e-05 40_[+5]_72 chr2R:13556030-13556150 2.7e-05 42_[+5]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGACAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGGACAA width=8 seqs=10 chr2R:10260988-10261108 ( 80) CTGGACAA 1 chrX:1880809-1880929 ( 107) CTGGACAA 1 chr2R:9586458-9586578 ( 22) CTGGACAA 1 chr2R:9591040-9591160 ( 1) CTGGACAA 1 chr3L:16128235-16128355 ( 62) CTGGACAA 1 chr2L:11486468-11486588 ( 41) CTGGACAA 1 chr3L:13031108-13031228 ( 31) CTGGACAA 1 chr3R:17645356-17645476 ( 76) ATGGACAA 1 chr3L:14975455-14975575 ( 41) ATGGACAA 1 chr2R:13556030-13556150 ( 43) ATGGACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGACAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8977 E= 7.8e+004 39 135 -997 -997 -997 -997 -997 216 -997 -997 187 -997 -997 -997 187 -997 213 -997 -997 -997 -997 187 -997 -997 213 -997 -997 -997 213 -997 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGACAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 7.8e+004 0.300000 0.700000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGACAA MEME-5 regular expression -------------------------------------------------------------------------------- [CA]TGGACAA -------------------------------------------------------------------------------- Time 32.03 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3671231-3671351 4.46e-01 120 chr3R:26037302-26037422 7.96e-01 120 chr3R:15803306-15803426 1.36e-01 120 chr2R:21482277-21482397 2.62e-03 8_[+1(3.57e-05)]_20_[+1(3.57e-05)]_\ 38_[+2(1.47e-05)]_30 chrX:2731864-2731984 3.52e-01 120 chrX:21350707-21350827 3.22e-02 19_[+1(7.19e-05)]_9_[+1(7.19e-05)]_\ 76 chrX:2468073-2468193 5.83e-01 120 chr3L:7381086-7381206 1.49e-01 53_[+2(3.24e-05)]_59 chr2R:8638220-8638340 5.01e-01 120 chr3L:5768482-5768602 2.85e-01 120 chr3R:13264745-13264865 9.03e-01 120 chr2L:708207-708327 2.29e-01 120 chr2R:19278105-19278225 9.29e-02 120 chr2L:11187733-11187853 6.99e-02 120 chr3L:15721216-15721336 7.35e-02 37_[+2(5.00e-05)]_10_[+2(5.00e-05)]_\ 57 chr3L:21558241-21558361 2.92e-02 120 chr3R:23709295-23709415 8.41e-01 120 chr2R:13230770-13230890 6.99e-01 120 chr3R:29670720-29670840 2.86e-01 120 chr2L:8686612-8686732 6.80e-01 120 chr2L:2236511-2236631 7.09e-01 120 chrX:18775433-18775553 3.19e-01 120 chr2L:13783032-13783152 9.33e-01 120 chr3L:749848-749968 1.25e-01 120 chr3L:15254175-15254295 2.07e-01 81_[+4(2.15e-05)]_31 chr3L:4003636-4003756 1.30e-01 120 chr3R:27252816-27252936 4.38e-01 120 chr2R:21032103-21032223 9.40e-02 93_[+2(1.47e-05)]_19 chr3R:23686900-23687020 8.00e-02 78_[+1(7.19e-05)]_34 chr2R:23752944-23753064 6.82e-01 120 chr3R:25595386-25595506 8.53e-01 120 chrX:4636535-4636655 6.21e-02 51_[+1(3.57e-05)]_61 chr2L:5997238-5997358 1.88e-01 120 chrX:2040851-2040971 2.30e-01 120 chr2R:11971104-11971224 5.64e-01 120 chrX:7105187-7105307 5.69e-04 6_[+1(3.57e-05)]_32_[+2(1.47e-05)]_\ 66 chr2L:573979-574099 3.73e-02 120 chr3L:3873586-3873706 7.57e-01 120 chr2L:19197439-19197559 1.87e-01 120 chr2R:23850678-23850798 9.86e-01 120 chr3L:13031108-13031228 7.24e-02 30_[+5(1.50e-05)]_82 chr3L:725619-725739 4.75e-01 120 chrX:17740819-17740939 2.70e-01 120 chrX:2703496-2703616 7.18e-01 120 chr3R:28819342-28819462 3.84e-02 28_[+2(3.24e-05)]_84 chrX:795885-796005 2.23e-01 120 chr2R:13158062-13158182 1.49e-01 120 chr3R:7107450-7107570 8.05e-01 120 chr2R:6178538-6178658 3.60e-01 120 chr3L:20226797-20226917 9.89e-01 120 chr2L:11486468-11486588 9.58e-02 40_[+5(1.50e-05)]_72 chr2R:13556030-13556150 3.49e-05 3_[+2(1.47e-05)]_31_[+5(2.74e-05)]_\ 70 chr2L:6528213-6528333 5.52e-01 120 chr3R:12691184-12691304 6.48e-01 120 chrX:3545887-3546007 6.87e-01 120 chr3L:2439645-2439765 3.45e-01 120 chr3R:15218612-15218732 2.96e-02 1_[+2(3.24e-05)]_111 chr2R:15890505-15890625 3.41e-01 120 chr2L:12427313-12427433 2.67e-01 120 chr3L:2773633-2773753 1.33e-01 120 chrX:15345577-15345697 5.69e-01 120 chrX:13722555-13722675 1.19e-01 57_[+1(7.19e-05)]_55 chr3R:24226527-24226647 2.01e-01 120 chrX:19701434-19701554 1.38e-01 67_[+2(7.68e-05)]_45 chr3R:22449722-22449842 4.51e-01 120 chr2R:7811735-7811855 8.30e-01 120 chrX:20490630-20490750 6.38e-01 120 chr3L:697297-697417 6.89e-01 120 chr3R:16828974-16829094 4.53e-03 89_[+1(3.57e-05)]_23 chr2L:6215632-6215752 5.59e-02 96_[+3(1.28e-05)]_16 chr3R:26000115-26000235 1.17e-01 44_[+1(7.19e-05)]_68 chr3R:16072898-16073018 9.44e-02 92_[+4(4.31e-05)]_20 chr2L:19051106-19051226 1.31e-01 120 chr2L:14577847-14577967 7.57e-01 120 chr2L:4459168-4459288 7.25e-01 120 chr2L:8073161-8073281 9.44e-01 120 chr2R:12334189-12334309 7.15e-01 120 chr2R:23976841-23976961 2.62e-01 120 chr3L:14975455-14975575 1.93e-02 40_[+5(2.74e-05)]_72 chrX:17635613-17635733 7.31e-04 28_[+3(2.07e-05)]_61_[+1(3.57e-05)]_\ 15 chr3L:21064474-21064594 5.25e-01 120 chr3L:19599306-19599426 2.37e-01 120 chr2L:11214362-11214482 4.46e-02 110_[+4(9.65e-06)]_2 chr2R:19506294-19506414 7.10e-01 120 chr3R:10612895-10613015 6.05e-01 120 chrX:11581027-11581147 1.86e-02 101_[+4(2.15e-05)]_11 chr3R:8139478-8139598 5.92e-01 120 chr2R:6599788-6599908 3.93e-01 120 chr2R:20561980-20562100 9.69e-01 120 chr3L:832912-833032 1.90e-02 45_[+4(9.65e-06)]_67 chr3L:4745881-4746001 4.61e-01 120 chrX:17578656-17578776 6.27e-01 120 chrX:7891296-7891416 6.32e-03 39_[+2(7.68e-05)]_73 chrX:13822990-13823110 3.43e-01 120 chrX:2251645-2251765 5.97e-01 120 chr3R:6986699-6986819 7.14e-01 120 chr3R:8001802-8001922 3.09e-02 120 chr3L:16128235-16128355 3.73e-02 61_[+5(1.50e-05)]_51 chr3L:21635698-21635818 2.20e-02 120 chr3L:21031119-21031239 4.21e-01 120 chr3R:10815577-10815697 2.69e-01 120 chr3R:22718003-22718123 6.81e-02 120 chr3L:9005365-9005485 8.41e-01 120 chr2L:17473742-17473862 2.27e-01 37_[+1(7.19e-05)]_75 chr3L:15620105-15620225 6.22e-01 120 chr2L:14273956-14274076 2.07e-01 120 chr3R:18984462-18984582 4.56e-01 120 chr2L:20757530-20757650 4.38e-01 120 chrX:2585160-2585280 4.99e-03 4_[+2(3.24e-05)]_42_[+1(3.57e-05)]_\ 58 chr2R:20114061-20114181 2.48e-02 109_[+1(3.57e-05)]_3 chrX:7893174-7893294 4.51e-01 120 chr2R:13552145-13552265 8.35e-02 120 chr3R:29219106-29219226 3.46e-03 57_[+1(3.57e-05)]_55 chr3L:2263114-2263234 3.56e-01 120 chr3L:21286462-21286582 6.13e-01 120 chr3R:27606635-27606755 5.69e-02 120 chr3R:29130680-29130800 5.35e-02 33_[+2(1.47e-05)]_79 chr3L:5776969-5777089 3.28e-01 120 chr3R:17645356-17645476 3.40e-02 75_[+5(2.74e-05)]_37 chr2L:4442596-4442716 1.39e-01 120 chr3L:20367478-20367598 7.28e-01 120 chr3R:27921695-27921815 1.36e-01 68_[+1(3.57e-05)]_44 chr2R:18421568-18421688 5.72e-03 8_[+2(1.47e-05)]_104 chr3R:5083484-5083604 1.35e-01 120 chr3R:24597660-24597780 9.74e-01 120 chr2L:13228133-13228253 3.42e-02 24_[+2(9.44e-05)]_51_[+1(7.19e-05)]_\ 29 chrX:18776423-18776543 4.10e-01 120 chr2R:15571124-15571244 8.31e-01 120 chr3L:8181101-8181221 6.17e-01 120 chr2R:23555765-23555885 2.35e-01 120 chr3R:16454600-16454720 9.67e-01 120 chr3L:13449982-13450102 3.89e-01 120 chrX:13683106-13683226 5.49e-01 120 chr2R:9591040-9591160 7.72e-03 [+5(1.50e-05)]_112 chr3L:10659379-10659499 8.85e-01 120 chr3L:1617870-1617990 6.81e-01 120 chr3R:10613098-10613218 7.17e-03 120 chrX:18784042-18784162 6.77e-01 120 chr2R:13968492-13968612 3.42e-01 120 chr3L:5877627-5877747 2.22e-01 120 chr3R:26058792-26058912 3.36e-01 120 chr3R:29667209-29667329 7.66e-01 120 chr2L:6065676-6065796 2.44e-01 120 chr3L:609283-609403 9.05e-01 120 chr2L:18604751-18604871 9.39e-01 120 chr2R:10811570-10811690 1.39e-01 120 chr3L:696393-696513 2.48e-01 120 chr3R:8304849-8304969 2.72e-02 66_[+4(2.15e-05)]_46 chr2L:2462470-2462590 4.27e-01 120 chr3L:10631505-10631625 3.54e-01 120 chr2L:4597745-4597865 9.59e-02 120 chr2R:23078799-23078919 6.67e-01 120 chr3R:26724790-26724910 4.29e-01 120 chr3L:20798880-20799000 8.20e-01 120 chr3L:21670352-21670472 2.65e-01 120 chr2L:3555497-3555617 6.79e-01 120 chr3L:12719786-12719906 2.23e-01 78_[+2(7.68e-05)]_34 chr3R:27272696-27272816 3.46e-03 89_[+4(9.65e-06)]_23 chr3L:14969901-14970021 2.43e-02 21_[+4(2.15e-05)]_91 chr2L:2758844-2758964 1.02e-01 66_[+2(1.47e-05)]_46 chr2R:19144916-19145036 1.67e-01 120 chrX:14103403-14103523 2.19e-03 87_[+4(9.65e-06)]_25 chr3L:742275-742395 7.54e-01 120 chr2L:9431670-9431790 4.89e-01 120 chr2L:11106354-11106474 1.15e-01 120 chrX:14753629-14753749 5.95e-01 120 chr3R:26884736-26884856 5.74e-02 41_[+3(2.84e-05)]_71 chr2R:18160911-18161031 3.59e-02 2_[+3(1.28e-05)]_110 chr2L:6691089-6691209 4.25e-01 120 chr3R:17798023-17798143 9.24e-01 120 chr2R:9586458-9586578 4.61e-02 21_[+5(1.50e-05)]_91 chr2R:19802525-19802645 8.73e-01 120 chr3L:15722922-15723042 2.68e-02 18_[+4(3.33e-05)]_94 chr3L:1639952-1640072 8.47e-01 120 chr3R:31686573-31686693 7.62e-01 120 chr3R:7129837-7129957 3.76e-04 110_[+3(6.45e-06)]_2 chr2L:5055546-5055666 2.78e-02 120 chr2R:15033892-15034012 8.97e-02 91_[+4(9.43e-05)]_3_[+4(3.33e-05)]_\ 10 chr3L:16005530-16005650 3.36e-01 120 chr2L:6456523-6456643 2.16e-01 120 chr2L:14491949-14492069 9.01e-01 120 chr2R:8043108-8043228 9.14e-01 120 chr3R:7164730-7164850 9.21e-02 27_[+1(7.19e-05)]_85 chr3R:28860412-28860532 7.63e-01 120 chr3R:5374201-5374321 1.51e-02 41_[+3(2.07e-05)]_71 chr2L:5049978-5050098 5.86e-01 120 chr2R:17143996-17144116 4.41e-01 120 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chrX:18774197-18774317 3.81e-03 29_[+2(6.47e-05)]_23_[+1(3.57e-05)]_\ 52 chr2R:17758407-17758527 5.74e-01 120 chr3L:5139761-5139881 2.81e-01 23_[+1(7.19e-05)]_89 chr3L:2878930-2879050 7.05e-01 120 chr2R:10260988-10261108 1.11e-01 79_[+5(1.50e-05)]_33 chr3L:15968408-15968528 8.42e-01 120 chr3R:24625282-24625402 4.96e-01 120 chr3L:21432851-21432971 2.35e-01 18_[+2(9.44e-05)]_94 chr2L:7872828-7872948 1.20e-02 98_[+3(6.45e-06)]_14 chr2L:13373491-13373611 5.64e-02 120 chr2L:5278192-5278312 2.32e-04 58_[+4(9.65e-06)]_3_[+3(1.28e-05)]_\ 43 chrX:2068308-2068428 6.68e-01 120 chr3L:16447626-16447746 1.04e-01 120 chrX:14200469-14200589 6.35e-01 120 chr3R:21390019-21390139 4.51e-02 94_[+2(6.47e-05)]_18 chr3L:1802576-1802696 8.72e-01 120 chr3R:27937551-27937671 9.34e-02 120 chr2R:20112189-20112309 8.00e-02 6_[+2(5.00e-05)]_106 chr3L:841120-841240 8.12e-01 120 chr2L:12435315-12435435 3.02e-01 120 chr3R:15340985-15341105 2.89e-01 120 chr2R:9131418-9131538 1.44e-01 120 chr2L:14598771-14598891 1.10e-01 120 chr3L:541095-541215 9.50e-01 120 chr2L:13230087-13230207 5.54e-01 120 chr3R:29304636-29304756 4.94e-01 120 chr3R:17113400-17113520 7.35e-01 120 chr3R:23773306-23773426 7.85e-01 120 chr3R:14574729-14574849 2.82e-01 120 chr2L:4226594-4226714 6.12e-01 120 chrX:15736846-15736966 1.56e-01 120 chr2R:23972649-23972769 6.63e-01 120 chr2L:6273913-6274033 2.48e-01 120 chr3L:3095682-3095802 4.39e-01 120 chr3L:20242780-20242900 6.16e-01 120 chr2R:17475734-17475854 7.56e-03 1_[+3(6.45e-06)]_111 chr2L:9252787-9252907 3.18e-01 120 chrX:14025467-14025587 1.43e-02 4_[+3(6.45e-06)]_108 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************