******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Suvar3-7.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:4949826-4949946 1.0000 120 chr2L:4950032-4950152 1.0000 120 chr3L:21825157-21825277 1.0000 120 chr2R:6168981-6169101 1.0000 120 chr2L:21730806-21730926 1.0000 120 chr2L:6538085-6538205 1.0000 120 chr3L:16385299-16385419 1.0000 120 chr3R:16624486-16624606 1.0000 120 chrX:19596137-19596257 1.0000 120 chr2L:21648939-21649059 1.0000 120 chr3R:13990407-13990527 1.0000 120 chr3L:5940759-5940879 1.0000 120 chrX:17930061-17930181 1.0000 120 chr3R:3374256-3374376 1.0000 120 chr4:1182074-1182194 1.0000 120 chrX:4641710-4641830 1.0000 120 chr2R:4270730-4270850 1.0000 120 chr3R:17710870-17710990 1.0000 120 chr2L:22261129-22261249 1.0000 120 chr3L:20474160-20474280 1.0000 120 chr3R:18302602-18302722 1.0000 120 chr3L:23344860-23344980 1.0000 120 chr2R:16109678-16109798 1.0000 120 chr3R:9994371-9994491 1.0000 120 chr3L:9445946-9446066 1.0000 120 chr2R:5121197-5121317 1.0000 120 chr2R:1513154-1513274 1.0000 120 chr3R:24091736-24091856 1.0000 120 chr3L:11559815-11559935 1.0000 120 chr2R:17459669-17459789 1.0000 120 chr2R:4657215-4657335 1.0000 120 chr2L:9697774-9697894 1.0000 120 chrX:17512169-17512289 1.0000 120 chr2R:4012732-4012852 1.0000 120 chr3R:19093440-19093560 1.0000 120 chr3L:18838005-18838125 1.0000 120 chr2R:5108931-5109051 1.0000 120 chr2R:6938604-6938724 1.0000 120 chrX:6179559-6179679 1.0000 120 chr2R:5258075-5258195 1.0000 120 chrX:8542899-8543019 1.0000 120 chr2R:22066806-22066926 1.0000 120 chr2R:13261848-13261968 1.0000 120 chr2R:5257329-5257449 1.0000 120 chr3L:4446063-4446183 1.0000 120 chr3L:20276745-20276865 1.0000 120 chr3L:19845707-19845827 1.0000 120 chrX:6759498-6759618 1.0000 120 chrX:17465644-17465764 1.0000 120 chr2L:9775341-9775461 1.0000 120 chr2R:16856866-16856986 1.0000 120 chr2R:5638579-5638699 1.0000 120 chr2L:15254387-15254507 1.0000 120 chr3L:10917812-10917932 1.0000 120 chr2L:8610994-8611114 1.0000 120 chr2R:4243022-4243142 1.0000 120 chr2R:5603250-5603370 1.0000 120 chr3R:9938617-9938737 1.0000 120 chr3L:26373627-26373747 1.0000 120 chr2R:5666426-5666546 1.0000 120 chr2L:1741762-1741882 1.0000 120 chr3L:14622560-14622680 1.0000 120 chrX:18494314-18494434 1.0000 120 chrX:13253193-13253313 1.0000 120 chr2L:16707387-16707507 1.0000 120 chr2R:23894872-23894992 1.0000 120 chr3L:753930-754050 1.0000 120 chr3L:1880840-1880960 1.0000 120 chr2R:4192535-4192655 1.0000 120 chr2L:5044538-5044658 1.0000 120 chr3R:8818960-8819080 1.0000 120 chr3L:23124456-23124576 1.0000 120 chr2R:8751622-8751742 1.0000 120 chr2R:7167897-7168017 1.0000 120 chr3L:2894806-2894926 1.0000 120 chr2R:24893676-24893796 1.0000 120 chr3R:10863561-10863681 1.0000 120 chrX:9119386-9119506 1.0000 120 chrX:19164880-19165000 1.0000 120 chr2R:12729322-12729442 1.0000 120 chr2R:21514511-21514631 1.0000 120 chrX:15591737-15591857 1.0000 120 chr3R:21862772-21862892 1.0000 120 chrX:10600662-10600782 1.0000 120 chr3L:9468474-9468594 1.0000 120 chr2R:4595210-4595330 1.0000 120 chr2L:12045868-12045988 1.0000 120 chr3R:4974687-4974807 1.0000 120 chr3R:7492243-7492363 1.0000 120 chrX:6663247-6663367 1.0000 120 chr2L:136878-136998 1.0000 120 chr3L:1139509-1139629 1.0000 120 chr2R:6464959-6465079 1.0000 120 chr2R:24293527-24293647 1.0000 120 chr3L:2409456-2409576 1.0000 120 chr2R:22737912-22738032 1.0000 120 chr2R:4188101-4188221 1.0000 120 chr3L:2393167-2393287 1.0000 120 chr3R:30013297-30013417 1.0000 120 chr3R:6170881-6171001 1.0000 120 chr3L:880814-880934 1.0000 120 chr2R:4829242-4829362 1.0000 120 chrX:11391670-11391790 1.0000 120 chr3R:14356756-14356876 1.0000 120 chrX:6110021-6110141 1.0000 120 chr3L:17993378-17993498 1.0000 120 chr2R:16640799-16640919 1.0000 120 chr3L:11580067-11580187 1.0000 120 chr3L:10691289-10691409 1.0000 120 chrX:2591789-2591909 1.0000 120 chrX:6279181-6279301 1.0000 120 chr3R:23817610-23817730 1.0000 120 chr2L:6794994-6795114 1.0000 120 chr2L:1655969-1656089 1.0000 120 chr2R:16271991-16272111 1.0000 120 chr3R:14820005-14820125 1.0000 120 chr3R:4197256-4197376 1.0000 120 chr3R:13660214-13660334 1.0000 120 chr2R:14903823-14903943 1.0000 120 chr2L:5977499-5977619 1.0000 120 chr2L:892592-892712 1.0000 120 chr4:1053833-1053953 1.0000 120 chr2L:6956909-6957029 1.0000 120 chr2L:3092646-3092766 1.0000 120 chrX:12547704-12547824 1.0000 120 chrX:4262799-4262919 1.0000 120 chr3R:29068954-29069074 1.0000 120 chr2R:24292834-24292954 1.0000 120 chr3L:19190922-19191042 1.0000 120 chrX:13630450-13630570 1.0000 120 chr3L:10679873-10679993 1.0000 120 chr2R:7063864-7063984 1.0000 120 chrX:19153331-19153451 1.0000 120 chr4:695014-695134 1.0000 120 chr2L:1145108-1145228 1.0000 120 chr2R:16097064-16097184 1.0000 120 chr2L:5325924-5326044 1.0000 120 chr3R:10161309-10161429 1.0000 120 chr2L:8894344-8894464 1.0000 120 chr2R:6133373-6133493 1.0000 120 chr3L:775114-775234 1.0000 120 chr3L:1206800-1206920 1.0000 120 chr3R:25215193-25215313 1.0000 120 chr2R:20994800-20994920 1.0000 120 chr3L:11358871-11358991 1.0000 120 chr2L:14619762-14619882 1.0000 120 chr2R:13482308-13482428 1.0000 120 chr2L:9938110-9938230 1.0000 120 chr3L:3970533-3970653 1.0000 120 chr2R:22197264-22197384 1.0000 120 chrX:16781180-16781300 1.0000 120 chr2R:22508033-22508153 1.0000 120 chr2R:21711963-21712083 1.0000 120 chrX:4498375-4498495 1.0000 120 chr2R:9557630-9557750 1.0000 120 chr2R:11094473-11094593 1.0000 120 chr2R:23668888-23669008 1.0000 120 chr2R:21282469-21282589 1.0000 120 chr2L:143267-143387 1.0000 120 chr3R:10100706-10100826 1.0000 120 chr2R:17160991-17161111 1.0000 120 chr3L:11258482-11258602 1.0000 120 chr2L:1651250-1651370 1.0000 120 chr2R:22546809-22546929 1.0000 120 chr3R:21118919-21119039 1.0000 120 chr2L:3058890-3059010 1.0000 120 chr3L:14190159-14190279 1.0000 120 chrX:17125195-17125315 1.0000 120 chr2R:9594167-9594287 1.0000 120 chr3R:14077172-14077292 1.0000 120 chr3R:5120932-5121052 1.0000 120 chr3L:4413228-4413348 1.0000 120 chr2R:7077075-7077195 1.0000 120 chrX:9120913-9121033 1.0000 120 chrX:13332907-13333027 1.0000 120 chr2R:18774951-18775071 1.0000 120 chrX:618695-618815 1.0000 120 chr2R:21909951-21910071 1.0000 120 chrX:8720326-8720446 1.0000 120 chr3R:5300784-5300904 1.0000 120 chr2R:21183172-21183292 1.0000 120 chr3R:20833079-20833199 1.0000 120 chr2R:9544876-9544996 1.0000 120 chr3R:29757370-29757490 1.0000 120 chr2R:14302779-14302899 1.0000 120 chrX:3136853-3136973 1.0000 120 chr2L:16816102-16816222 1.0000 120 chr2R:11712208-11712328 1.0000 120 chr3R:28556476-28556596 1.0000 120 chr2R:17564778-17564898 1.0000 120 chrX:16096601-16096721 1.0000 120 chr3R:22639548-22639668 1.0000 120 chr2L:3042225-3042345 1.0000 120 chrX:1083275-1083395 1.0000 120 chr2R:8947347-8947467 1.0000 120 chr2R:22539964-22540084 1.0000 120 chr3L:9614084-9614204 1.0000 120 chr3R:16069427-16069547 1.0000 120 chr2R:22562186-22562306 1.0000 120 chrX:1370123-1370243 1.0000 120 chr2R:11899418-11899538 1.0000 120 chrX:19008959-19009079 1.0000 120 chrX:1380441-1380561 1.0000 120 chr2R:16551986-16552106 1.0000 120 chr2L:10698125-10698245 1.0000 120 chr2L:18136707-18136827 1.0000 120 chr2L:19935296-19935416 1.0000 120 chr2L:220713-220833 1.0000 120 chr3R:10140374-10140494 1.0000 120 chr2R:9820179-9820299 1.0000 120 chr2L:16251930-16252050 1.0000 120 chrX:6375806-6375926 1.0000 120 chr2L:7037938-7038058 1.0000 120 chr2R:20319566-20319686 1.0000 120 chrX:13127997-13128117 1.0000 120 chr2R:9309635-9309755 1.0000 120 chr2L:21619153-21619273 1.0000 120 chr3R:30802297-30802417 1.0000 120 chr3R:13016290-13016410 1.0000 120 chrX:19308134-19308254 1.0000 120 chr2R:23383472-23383592 1.0000 120 chrX:11548838-11548958 1.0000 120 chr3L:5789842-5789962 1.0000 120 chr3L:13189454-13189574 1.0000 120 chr2R:21060678-21060798 1.0000 120 chrX:2158952-2159072 1.0000 120 chr3L:8584236-8584356 1.0000 120 chrX:3845756-3845876 1.0000 120 chr2L:871558-871678 1.0000 120 chr2L:20890038-20890158 1.0000 120 chrX:1880355-1880475 1.0000 120 chrX:23013417-23013537 1.0000 120 chr3R:12350616-12350736 1.0000 120 chr2L:4403133-4403253 1.0000 120 chrX:8606368-8606488 1.0000 120 chr3L:13922382-13922502 1.0000 120 chrX:20507826-20507946 1.0000 120 chr2L:7412287-7412407 1.0000 120 chr3R:25168334-25168454 1.0000 120 chrX:7945529-7945649 1.0000 120 chr3R:10893543-10893663 1.0000 120 chrX:10387813-10387933 1.0000 120 chr3R:17534617-17534737 1.0000 120 chr2R:23818405-23818525 1.0000 120 chrX:17176699-17176819 1.0000 120 chr3L:18840623-18840743 1.0000 120 chr3L:3197586-3197706 1.0000 120 chr3L:8720205-8720325 1.0000 120 chr2L:1628243-1628363 1.0000 120 chr2R:13968165-13968285 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Suvar3-7/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Suvar3-7.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.289 C 0.21 G 0.208 T 0.293 Background letter frequencies (from file dataset with add-one prior applied): A 0.289 C 0.21 G 0.208 T 0.293 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGTGGCGC MEME-1 width = 8 sites = 4 llr = 49 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::a:a probability G aa:aa:a: matrix T ::a::::: bits 2.3 ** ***** 2.0 ** ***** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (17.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTGGCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9820179-9820299 63 5.03e-06 TTATCGGCTA GGTGGCGC TCTATTTCGA chr3R:10100706-10100826 45 5.03e-06 TTGGCCAGAA GGTGGCGC TCGATGCGAC chrX:6110021-6110141 81 5.03e-06 GCGGACGCCA GGTGGCGC CACACATGTA chr3L:2409456-2409576 36 5.03e-06 TTCAGAGATA GGTGGCGC TTTACAAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9820179-9820299 5e-06 62_[+1]_50 chr3R:10100706-10100826 5e-06 44_[+1]_68 chrX:6110021-6110141 5e-06 80_[+1]_32 chr3L:2409456-2409576 5e-06 35_[+1]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTGGCGC width=8 seqs=4 chr2R:9820179-9820299 ( 63) GGTGGCGC 1 chr3R:10100706-10100826 ( 45) GGTGGCGC 1 chrX:6110021-6110141 ( 81) GGTGGCGC 1 chr3L:2409456-2409576 ( 36) GGTGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 1.5e+004 -865 -865 226 -865 -865 -865 226 -865 -865 -865 -865 177 -865 -865 226 -865 -865 -865 226 -865 -865 225 -865 -865 -865 -865 226 -865 -865 225 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-1 regular expression -------------------------------------------------------------------------------- GGTGGCGC -------------------------------------------------------------------------------- Time 8.69 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCGCCA MEME-2 width = 8 sites = 12 llr = 121 E-value = 2.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCGCCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::1::::9 pos.-specific C 11:9:aa: probability G 99918::1 matrix T ::::3::: bits 2.3 ** 2.0 ** 1.8 **** ** 1.6 **** ** Relative 1.4 ******** Entropy 1.1 ******** (14.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGCGCCA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGCCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9614084-9614204 92 5.01e-06 CACACTTTTG GGGCGCCA CTAAGGTAAA chr3L:11358871-11358991 3 5.01e-06 GA GGGCGCCA CCGTGGCCCA chr3L:10917812-10917932 82 5.01e-06 GTGCCCCGTT GGGCGCCA CAAACAGGTG chr3L:5940759-5940879 63 5.01e-06 GCCCCACGTT GGGCGCCA CAACCTATCA chr3L:8584236-8584356 81 1.21e-05 AATATGCAAT GGGCTCCA GGGTGAATAA chr2R:16856866-16856986 59 1.21e-05 AGCCGGAAAG GGGCTCCA AAGATGCAGC chr3L:20474160-20474280 99 1.21e-05 CCGGTTCCAA GGGCTCCA AAACGGACTA chr3R:10863561-10863681 89 1.57e-05 GCTGGGCAAT GGGCGCCG CGGTGGGCGT chr3R:12350616-12350736 29 3.07e-05 GATGGAATAA GCGCGCCA CCTACTGGCC chr3L:26373627-26373747 56 3.07e-05 caaccacacc cggcgcca tgagctagag chr2L:6538085-6538205 94 3.07e-05 CAAAGGAAGT GGGGGCCA CATGGTTTGG chrX:6110021-6110141 73 3.77e-05 TTCAGCCAGC GGACGCCA GGTGGCGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGCCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9614084-9614204 5e-06 91_[+2]_21 chr3L:11358871-11358991 5e-06 2_[+2]_110 chr3L:10917812-10917932 5e-06 81_[+2]_31 chr3L:5940759-5940879 5e-06 62_[+2]_50 chr3L:8584236-8584356 1.2e-05 80_[+2]_32 chr2R:16856866-16856986 1.2e-05 58_[+2]_54 chr3L:20474160-20474280 1.2e-05 98_[+2]_14 chr3R:10863561-10863681 1.6e-05 88_[+2]_24 chr3R:12350616-12350736 3.1e-05 28_[+2]_84 chr3L:26373627-26373747 3.1e-05 55_[+2]_57 chr2L:6538085-6538205 3.1e-05 93_[+2]_19 chrX:6110021-6110141 3.8e-05 72_[+2]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGCCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCGCCA width=8 seqs=12 chr3L:9614084-9614204 ( 92) GGGCGCCA 1 chr3L:11358871-11358991 ( 3) GGGCGCCA 1 chr3L:10917812-10917932 ( 82) GGGCGCCA 1 chr3L:5940759-5940879 ( 63) GGGCGCCA 1 chr3L:8584236-8584356 ( 81) GGGCTCCA 1 chr2R:16856866-16856986 ( 59) GGGCTCCA 1 chr3L:20474160-20474280 ( 99) GGGCTCCA 1 chr3R:10863561-10863681 ( 89) GGGCGCCG 1 chr3R:12350616-12350736 ( 29) GCGCGCCA 1 chr3L:26373627-26373747 ( 56) CGGCGCCA 1 chr2L:6538085-6538205 ( 94) GGGGGCCA 1 chrX:6110021-6110141 ( 73) GGACGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGCCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3003 E= 2.9e+003 -1023 -133 214 -1023 -1023 -133 214 -1023 -179 -1023 214 -1023 -1023 213 -132 -1023 -1023 -1023 185 -23 -1023 225 -1023 -1023 -1023 225 -1023 -1023 166 -1023 -132 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGCCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.9e+003 0.000000 0.083333 0.916667 0.000000 0.000000 0.083333 0.916667 0.000000 0.083333 0.000000 0.916667 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.916667 0.000000 0.083333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGCCA MEME-2 regular expression -------------------------------------------------------------------------------- GGGC[GT]CCA -------------------------------------------------------------------------------- Time 15.01 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTGACCC MEME-3 width = 8 sites = 8 llr = 86 E-value = 6.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTGACCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::a::1 pos.-specific C :::::aa9 probability G 8a:a:::: matrix T 3:a::::: bits 2.3 * * ** 2.0 * * ** 1.8 ****** 1.6 ******* Relative 1.4 ******** Entropy 1.1 ******** (15.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTGACCC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGACCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:1741762-1741882 47 7.06e-06 GGGTCACCAT GGTGACCC CGACAGCGGT chr3R:9994371-9994491 67 7.06e-06 AACCAAACGT GGTGACCC CGAAACTTAA chrX:4641710-4641830 89 7.06e-06 tgacaccgat ggtgaccc cgatggtgac chr3L:16385299-16385419 56 7.06e-06 GCACTCAATT GGTGACCC CGACGTTGAT chr2L:4949826-4949946 81 7.06e-06 ACATTTTGTT GGTGACCC CGATTTATAT chr2R:8947347-8947467 21 1.70e-05 ACCCTTCCAG TGTGACCC TCGCTCAGCG chr2R:14903823-14903943 5 1.70e-05 CTTT TGTGACCC CAATGCGCAA chrX:618695-618815 27 2.67e-05 CAATTTACGA GGTGACCA TTCCTCCTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGACCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1741762-1741882 7.1e-06 46_[+3]_66 chr3R:9994371-9994491 7.1e-06 66_[+3]_46 chrX:4641710-4641830 7.1e-06 88_[+3]_24 chr3L:16385299-16385419 7.1e-06 55_[+3]_57 chr2L:4949826-4949946 7.1e-06 80_[+3]_32 chr2R:8947347-8947467 1.7e-05 20_[+3]_92 chr2R:14903823-14903943 1.7e-05 4_[+3]_108 chrX:618695-618815 2.7e-05 26_[+3]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGACCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTGACCC width=8 seqs=8 chr2L:1741762-1741882 ( 47) GGTGACCC 1 chr3R:9994371-9994491 ( 67) GGTGACCC 1 chrX:4641710-4641830 ( 89) GGTGACCC 1 chr3L:16385299-16385419 ( 56) GGTGACCC 1 chr2L:4949826-4949946 ( 81) GGTGACCC 1 chr2R:8947347-8947467 ( 21) TGTGACCC 1 chr2R:14903823-14903943 ( 5) TGTGACCC 1 chrX:618695-618815 ( 27) GGTGACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGACCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 6.8e+004 -965 -965 185 -23 -965 -965 226 -965 -965 -965 -965 177 -965 -965 226 -965 179 -965 -965 -965 -965 225 -965 -965 -965 225 -965 -965 -121 206 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGACCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 6.8e+004 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGACCC MEME-3 regular expression -------------------------------------------------------------------------------- [GT]GTGACCC -------------------------------------------------------------------------------- Time 21.22 secs. ******************************************************************************** ******************************************************************************** MOTIF GCKGCYWG MEME-4 width = 8 sites = 15 llr = 147 E-value = 2.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCKGCYWG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::5: pos.-specific C :a::a6:: probability G a:4a:::a matrix T ::6::45: bits 2.3 ** ** * 2.0 ** ** * 1.8 ** ** * 1.6 ** ** * Relative 1.4 ** ** * Entropy 1.1 ** *** * (14.2 bits) 0.9 ****** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCCAG consensus G TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGCYWG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:22639548-22639668 40 1.21e-05 TAAAAACAGG GCTGCCAG ACTCATTGAA chr3R:28556476-28556596 28 1.21e-05 AAAAATACAA GCGGCCAG AAATGAGGAA chr2R:11712208-11712328 87 1.21e-05 GTTGTAGATC GCTGCCAG CGGAAGCAAC chr2R:14302779-14302899 31 1.21e-05 ATAGGATAGT GCTGCCAG ACATAAAAAT chr3R:10161309-10161429 23 1.21e-05 AAATACCAGG GCTGCCAG CTACACAAGA chr2L:1741762-1741882 92 1.21e-05 TTGCACCACG GCGGCCAG CTCGGAGCTG chr2L:8894344-8894464 57 2.43e-05 TTGTTTGACA GCTGCCTG CATTAAAAAC chr3L:1880840-1880960 22 2.43e-05 TTTTTAAAAA GCTGCCTG AAAAGTTAAC chr3L:753930-754050 20 2.43e-05 GCTACCCGCA GCTGCCTg cccacccact chr3L:18840623-18840743 27 4.11e-05 ACGTTTTTGG GCGGCTAG TGGTGGCACC chr2L:9697774-9697894 3 4.11e-05 ct gctgctag cctggtccgc chr2R:6133373-6133493 9 5.82e-05 GGACGGCA GCGGCTTG GTGTCGGGGG chrX:4262799-4262919 8 5.82e-05 TAACCAA GCGGCTTG TAAATTCACA chr2L:12045868-12045988 23 5.82e-05 CTCTTGTTGC GCTGCTTG CCGCTGTGTC chr2R:16109678-16109798 33 5.82e-05 GGCACCGGAG GCGGCTTG ATCAGGCTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGCYWG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:22639548-22639668 1.2e-05 39_[+4]_73 chr3R:28556476-28556596 1.2e-05 27_[+4]_85 chr2R:11712208-11712328 1.2e-05 86_[+4]_26 chr2R:14302779-14302899 1.2e-05 30_[+4]_82 chr3R:10161309-10161429 1.2e-05 22_[+4]_90 chr2L:1741762-1741882 1.2e-05 91_[+4]_21 chr2L:8894344-8894464 2.4e-05 56_[+4]_56 chr3L:1880840-1880960 2.4e-05 21_[+4]_91 chr3L:753930-754050 2.4e-05 19_[+4]_93 chr3L:18840623-18840743 4.1e-05 26_[+4]_86 chr2L:9697774-9697894 4.1e-05 2_[+4]_110 chr2R:6133373-6133493 5.8e-05 8_[+4]_104 chrX:4262799-4262919 5.8e-05 7_[+4]_105 chr2L:12045868-12045988 5.8e-05 22_[+4]_90 chr2R:16109678-16109798 5.8e-05 32_[+4]_80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGCYWG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCKGCYWG width=8 seqs=15 chr3R:22639548-22639668 ( 40) GCTGCCAG 1 chr3R:28556476-28556596 ( 28) GCGGCCAG 1 chr2R:11712208-11712328 ( 87) GCTGCCAG 1 chr2R:14302779-14302899 ( 31) GCTGCCAG 1 chr3R:10161309-10161429 ( 23) GCTGCCAG 1 chr2L:1741762-1741882 ( 92) GCGGCCAG 1 chr2L:8894344-8894464 ( 57) GCTGCCTG 1 chr3L:1880840-1880960 ( 22) GCTGCCTG 1 chr3L:753930-754050 ( 20) GCTGCCTG 1 chr3L:18840623-18840743 ( 27) GCGGCTAG 1 chr2L:9697774-9697894 ( 3) GCTGCTAG 1 chr2R:6133373-6133493 ( 9) GCGGCTTG 1 chrX:4262799-4262919 ( 8) GCGGCTTG 1 chr2L:12045868-12045988 ( 23) GCTGCTTG 1 chr2R:16109678-16109798 ( 33) GCGGCTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGCYWG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1534 E= 2.3e+004 -1055 -1055 226 -1055 -1055 225 -1055 -1055 -1055 -1055 94 103 -1055 -1055 226 -1055 -1055 225 -1055 -1055 -1055 151 -1055 45 88 -1055 -1055 67 -1055 -1055 226 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGCYWG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 2.3e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.533333 0.000000 0.000000 0.466667 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGCYWG MEME-4 regular expression -------------------------------------------------------------------------------- GC[TG]GC[CT][AT]G -------------------------------------------------------------------------------- Time 27.62 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGSGKCG MEME-5 width = 8 sites = 6 llr = 67 E-value = 1.4e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGSGKCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::7::a: probability G :aa3a7:a matrix T :::::3:: bits 2.3 *** * ** 2.0 *** * ** 1.8 *** * ** 1.6 *** * ** Relative 1.4 ***** ** Entropy 1.1 ******** (16.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGGCGGCG consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGSGKCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6110021-6110141 24 3.61e-06 ACTTGTTTAT CGGCGGCG TCTCTCGCGA chr2R:16109678-16109798 93 3.61e-06 GAGTCCGTGT CGGCGGCG CTGGTGCAGG chr3R:16069427-16069547 7 7.18e-06 gcggag cgggggcg gtacagcgga chr2R:6133373-6133493 21 7.18e-06 GGCTTGGTGT CGGGGGCG TGAAAGAGAC chrX:19153331-19153451 64 1.23e-05 TCGATTCGCG CGGCGTCG CGACGCAGCA chr3R:13660214-13660334 54 1.23e-05 CGAATATTGT CGGCGTCG ACATTTTGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGSGKCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6110021-6110141 3.6e-06 23_[+5]_89 chr2R:16109678-16109798 3.6e-06 92_[+5]_20 chr3R:16069427-16069547 7.2e-06 6_[+5]_106 chr2R:6133373-6133493 7.2e-06 20_[+5]_92 chrX:19153331-19153451 1.2e-05 63_[+5]_49 chr3R:13660214-13660334 1.2e-05 53_[+5]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGSGKCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGSGKCG width=8 seqs=6 chrX:6110021-6110141 ( 24) CGGCGGCG 1 chr2R:16109678-16109798 ( 93) CGGCGGCG 1 chr3R:16069427-16069547 ( 7) CGGGGGCG 1 chr2R:6133373-6133493 ( 21) CGGGGGCG 1 chrX:19153331-19153451 ( 64) CGGCGTCG 1 chr3R:13660214-13660334 ( 54) CGGCGTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGSGKCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.3004 E= 1.4e+005 -923 225 -923 -923 -923 -923 226 -923 -923 -923 226 -923 -923 167 68 -923 -923 -923 226 -923 -923 -923 168 19 -923 225 -923 -923 -923 -923 226 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGSGKCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.4e+005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGSGKCG MEME-5 regular expression -------------------------------------------------------------------------------- CGG[CG]G[GT]CG -------------------------------------------------------------------------------- Time 34.15 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:4949826-4949946 3.15e-02 80_[+3(7.06e-06)]_32 chr2L:4950032-4950152 1.45e-01 120 chr3L:21825157-21825277 6.80e-02 120 chr2R:6168981-6169101 9.32e-01 120 chr2L:21730806-21730926 4.74e-01 120 chr2L:6538085-6538205 4.88e-02 93_[+2(3.07e-05)]_19 chr3L:16385299-16385419 2.28e-03 55_[+3(7.06e-06)]_57 chr3R:16624486-16624606 3.84e-02 37_[+3(7.48e-05)]_13_[+3(7.48e-05)]_\ 54 chrX:19596137-19596257 3.44e-01 120 chr2L:21648939-21649059 6.78e-01 120 chr3R:13990407-13990527 1.27e-01 120 chr3L:5940759-5940879 8.99e-04 62_[+2(5.01e-06)]_50 chrX:17930061-17930181 3.56e-01 120 chr3R:3374256-3374376 9.96e-01 120 chr4:1182074-1182194 6.99e-01 120 chrX:4641710-4641830 1.61e-02 88_[+3(7.06e-06)]_4_[+3(7.06e-06)]_\ 12 chr2R:4270730-4270850 3.41e-01 120 chr3R:17710870-17710990 1.80e-01 120 chr2L:22261129-22261249 3.98e-02 120 chr3L:20474160-20474280 1.65e-02 98_[+2(1.21e-05)]_14 chr3R:18302602-18302722 3.28e-02 120 chr3L:23344860-23344980 1.32e-01 120 chr2R:16109678-16109798 1.40e-06 27_[+5(3.59e-05)]_57_[+5(3.61e-06)]_\ 20 chr3R:9994371-9994491 4.41e-02 45_[+3(7.06e-06)]_13_[+3(7.06e-06)]_\ 46 chr3L:9445946-9446066 1.14e-02 120 chr2R:5121197-5121317 8.65e-01 120 chr2R:1513154-1513274 3.05e-01 120 chr3R:24091736-24091856 5.32e-01 120 chr3L:11559815-11559935 2.64e-01 120 chr2R:17459669-17459789 9.35e-01 120 chr2R:4657215-4657335 8.53e-03 120 chr2L:9697774-9697894 1.05e-02 2_[+4(4.11e-05)]_110 chrX:17512169-17512289 2.50e-02 120 chr2R:4012732-4012852 9.75e-01 120 chr3R:19093440-19093560 4.35e-01 120 chr3L:18838005-18838125 9.71e-01 120 chr2R:5108931-5109051 6.64e-01 120 chr2R:6938604-6938724 8.89e-01 120 chrX:6179559-6179679 6.12e-01 120 chr2R:5258075-5258195 3.10e-01 120 chrX:8542899-8543019 6.77e-01 120 chr2R:22066806-22066926 9.38e-02 120 chr2R:13261848-13261968 9.95e-01 120 chr2R:5257329-5257449 4.36e-01 120 chr3L:4446063-4446183 9.97e-01 120 chr3L:20276745-20276865 1.00e+00 120 chr3L:19845707-19845827 6.32e-01 120 chrX:6759498-6759618 9.17e-01 120 chrX:17465644-17465764 6.44e-01 120 chr2L:9775341-9775461 9.42e-01 120 chr2R:16856866-16856986 2.34e-04 58_[+2(1.21e-05)]_54 chr2R:5638579-5638699 2.50e-01 120 chr2L:15254387-15254507 1.00e+00 120 chr3L:10917812-10917932 1.32e-04 81_[+2(5.01e-06)]_31 chr2L:8610994-8611114 9.78e-01 120 chr2R:4243022-4243142 9.91e-01 120 chr2R:5603250-5603370 9.61e-01 120 chr3R:9938617-9938737 7.98e-01 120 chr3L:26373627-26373747 9.70e-03 55_[+2(3.07e-05)]_57 chr2R:5666426-5666546 7.90e-01 120 chr2L:1741762-1741882 3.25e-06 46_[+3(7.06e-06)]_37_[+4(1.21e-05)]_\ 21 chr3L:14622560-14622680 8.72e-01 120 chrX:18494314-18494434 5.47e-01 120 chrX:13253193-13253313 1.00e+00 120 chr2L:16707387-16707507 1.00e+00 120 chr2R:23894872-23894992 1.00e+00 120 chr3L:753930-754050 3.05e-02 19_[+4(2.43e-05)]_93 chr3L:1880840-1880960 2.96e-01 21_[+4(2.43e-05)]_91 chr2R:4192535-4192655 2.23e-02 120 chr2L:5044538-5044658 3.85e-01 120 chr3R:8818960-8819080 4.28e-02 120 chr3L:23124456-23124576 2.05e-01 120 chr2R:8751622-8751742 9.82e-01 120 chr2R:7167897-7168017 6.37e-01 120 chr3L:2894806-2894926 1.66e-01 120 chr2R:24893676-24893796 7.89e-01 120 chr3R:10863561-10863681 9.21e-04 88_[+2(1.57e-05)]_24 chrX:9119386-9119506 9.53e-01 120 chrX:19164880-19165000 3.24e-01 120 chr2R:12729322-12729442 3.17e-01 120 chr2R:21514511-21514631 1.00e+00 120 chrX:15591737-15591857 5.39e-01 120 chr3R:21862772-21862892 2.03e-02 120 chrX:10600662-10600782 9.59e-01 120 chr3L:9468474-9468594 9.99e-01 120 chr2R:4595210-4595330 7.54e-01 120 chr2L:12045868-12045988 1.75e-02 22_[+4(5.82e-05)]_90 chr3R:4974687-4974807 1.81e-01 120 chr3R:7492243-7492363 9.49e-01 120 chrX:6663247-6663367 7.70e-02 120 chr2L:136878-136998 3.32e-01 120 chr3L:1139509-1139629 9.02e-01 120 chr2R:6464959-6465079 7.88e-01 120 chr2R:24293527-24293647 4.92e-01 120 chr3L:2409456-2409576 6.63e-03 35_[+1(5.03e-06)]_77 chr2R:22737912-22738032 9.81e-01 120 chr2R:4188101-4188221 5.11e-02 20_[+3(4.04e-05)]_92 chr3L:2393167-2393287 9.17e-01 120 chr3R:30013297-30013417 9.85e-01 120 chr3R:6170881-6171001 1.37e-01 120 chr3L:880814-880934 2.24e-01 120 chr2R:4829242-4829362 1.79e-01 120 chrX:11391670-11391790 5.01e-01 120 chr3R:14356756-14356876 9.96e-01 120 chrX:6110021-6110141 4.21e-07 23_[+5(3.61e-06)]_41_[+2(3.77e-05)]_\ [+1(5.03e-06)]_32 chr3L:17993378-17993498 2.39e-01 120 chr2R:16640799-16640919 5.10e-01 120 chr3L:11580067-11580187 9.95e-01 120 chr3L:10691289-10691409 2.47e-01 120 chrX:2591789-2591909 1.81e-02 120 chrX:6279181-6279301 9.65e-01 120 chr3R:23817610-23817730 4.81e-01 120 chr2L:6794994-6795114 8.80e-01 120 chr2L:1655969-1656089 8.99e-01 120 chr2R:16271991-16272111 9.86e-01 120 chr3R:14820005-14820125 3.06e-01 120 chr3R:4197256-4197376 5.50e-01 120 chr3R:13660214-13660334 3.55e-03 53_[+5(1.23e-05)]_59 chr2R:14903823-14903943 2.53e-02 4_[+3(1.70e-05)]_108 chr2L:5977499-5977619 8.06e-01 120 chr2L:892592-892712 8.60e-01 120 chr4:1053833-1053953 9.98e-01 120 chr2L:6956909-6957029 1.24e-01 120 chr2L:3092646-3092766 9.99e-01 120 chrX:12547704-12547824 9.98e-01 120 chrX:4262799-4262919 1.20e-01 7_[+4(5.82e-05)]_105 chr3R:29068954-29069074 9.98e-01 120 chr2R:24292834-24292954 8.46e-01 120 chr3L:19190922-19191042 1.00e+00 120 chrX:13630450-13630570 9.93e-01 120 chr3L:10679873-10679993 1.00e+00 120 chr2R:7063864-7063984 3.35e-02 120 chrX:19153331-19153451 1.77e-03 63_[+5(1.23e-05)]_49 chr4:695014-695134 2.26e-01 120 chr2L:1145108-1145228 7.83e-01 120 chr2R:16097064-16097184 9.98e-01 120 chr2L:5325924-5326044 9.01e-01 120 chr3R:10161309-10161429 1.10e-01 22_[+4(1.21e-05)]_90 chr2L:8894344-8894464 2.63e-01 56_[+4(2.43e-05)]_56 chr2R:6133373-6133493 6.75e-05 8_[+4(5.82e-05)]_4_[+5(7.18e-06)]_\ 92 chr3L:775114-775234 2.08e-01 9_[+3(4.04e-05)]_103 chr3L:1206800-1206920 1.21e-01 120 chr3R:25215193-25215313 6.46e-01 120 chr2R:20994800-20994920 4.89e-01 120 chr3L:11358871-11358991 1.04e-03 2_[+2(5.01e-06)]_110 chr2L:14619762-14619882 9.99e-01 120 chr2R:13482308-13482428 9.50e-01 120 chr2L:9938110-9938230 9.26e-01 120 chr3L:3970533-3970653 9.51e-01 120 chr2R:22197264-22197384 8.04e-01 120 chrX:16781180-16781300 9.14e-01 120 chr2R:22508033-22508153 8.46e-01 120 chr2R:21711963-21712083 1.70e-01 120 chrX:4498375-4498495 3.23e-01 120 chr2R:9557630-9557750 8.84e-01 120 chr2R:11094473-11094593 9.17e-01 120 chr2R:23668888-23669008 2.48e-01 120 chr2R:21282469-21282589 1.05e-01 120 chr2L:143267-143387 8.57e-01 120 chr3R:10100706-10100826 1.78e-03 44_[+1(5.03e-06)]_68 chr2R:17160991-17161111 7.81e-01 120 chr3L:11258482-11258602 6.27e-01 120 chr2L:1651250-1651370 4.56e-02 120 chr2R:22546809-22546929 2.12e-01 120 chr3R:21118919-21119039 5.82e-01 120 chr2L:3058890-3059010 1.16e-01 120 chr3L:14190159-14190279 9.03e-01 120 chrX:17125195-17125315 7.83e-02 120 chr2R:9594167-9594287 4.49e-01 120 chr3R:14077172-14077292 9.89e-01 120 chr3R:5120932-5121052 9.61e-01 120 chr3L:4413228-4413348 9.98e-01 120 chr2R:7077075-7077195 7.32e-01 120 chrX:9120913-9121033 9.84e-01 120 chrX:13332907-13333027 1.32e-01 120 chr2R:18774951-18775071 9.81e-01 120 chrX:618695-618815 3.10e-02 26_[+3(2.67e-05)]_86 chr2R:21909951-21910071 1.43e-01 120 chrX:8720326-8720446 3.38e-01 120 chr3R:5300784-5300904 3.16e-02 120 chr2R:21183172-21183292 6.82e-01 120 chr3R:20833079-20833199 1.64e-01 120 chr2R:9544876-9544996 9.27e-01 120 chr3R:29757370-29757490 6.93e-01 120 chr2R:14302779-14302899 6.01e-02 30_[+4(1.21e-05)]_82 chrX:3136853-3136973 3.67e-01 120 chr2L:16816102-16816222 2.54e-01 120 chr2R:11712208-11712328 9.08e-03 86_[+4(1.21e-05)]_26 chr3R:28556476-28556596 7.11e-02 27_[+4(1.21e-05)]_85 chr2R:17564778-17564898 7.33e-01 120 chrX:16096601-16096721 8.22e-02 120 chr3R:22639548-22639668 4.51e-02 39_[+4(1.21e-05)]_73 chr2L:3042225-3042345 3.16e-01 120 chrX:1083275-1083395 7.45e-01 120 chr2R:8947347-8947467 1.76e-03 20_[+3(1.70e-05)]_92 chr2R:22539964-22540084 9.00e-01 120 chr3L:9614084-9614204 2.07e-03 91_[+2(5.01e-06)]_21 chr3R:16069427-16069547 7.97e-03 6_[+5(7.18e-06)]_106 chr2R:22562186-22562306 2.21e-01 120 chrX:1370123-1370243 9.15e-01 120 chr2R:11899418-11899538 8.07e-02 120 chrX:19008959-19009079 8.88e-01 120 chrX:1380441-1380561 1.72e-01 120 chr2R:16551986-16552106 2.35e-01 120 chr2L:10698125-10698245 9.94e-01 120 chr2L:18136707-18136827 2.36e-02 120 chr2L:19935296-19935416 1.68e-01 120 chr2L:220713-220833 1.92e-02 120 chr3R:10140374-10140494 3.70e-01 120 chr2R:9820179-9820299 5.54e-04 62_[+1(5.03e-06)]_50 chr2L:16251930-16252050 9.92e-01 120 chrX:6375806-6375926 9.40e-01 120 chr2L:7037938-7038058 6.13e-01 120 chr2R:20319566-20319686 6.83e-01 120 chrX:13127997-13128117 1.00e+00 120 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chr3R:17534617-17534737 9.29e-01 120 chr2R:23818405-23818525 8.34e-01 120 chrX:17176699-17176819 1.00e+00 120 chr3L:18840623-18840743 1.89e-03 26_[+4(4.11e-05)]_86 chr3L:3197586-3197706 4.15e-01 120 chr3L:8720205-8720325 7.87e-01 120 chr2L:1628243-1628363 1.00e+00 120 chr2R:13968165-13968285 1.91e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************