******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Suvar205.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:5396616-5396736 1.0000 120 chr2R:4280723-4280843 1.0000 120 chr2R:4277219-4277339 1.0000 120 chr3R:2531943-2532063 1.0000 120 chr3R:2526972-2527092 1.0000 120 chr2L:23370004-23370124 1.0000 120 chr2L:23074703-23074823 1.0000 120 chr4:926306-926426 1.0000 120 chr2R:5087947-5088067 1.0000 120 chr4:568695-568815 1.0000 120 chr3R:3621976-3622096 1.0000 120 chr2L:23175574-23175694 1.0000 120 chr4:1270852-1270972 1.0000 120 chr2R:4795365-4795485 1.0000 120 chr2R:2849238-2849358 1.0000 120 chr2R:5073989-5074109 1.0000 120 chr4:576128-576248 1.0000 120 chr2R:1599758-1599878 1.0000 120 chr4:139532-139652 1.0000 120 chr2R:5343630-5343750 1.0000 120 chr4:197950-198070 1.0000 120 chr3L:23087992-23088112 1.0000 120 chr3L:23083105-23083225 1.0000 120 chr3L:24974566-24974686 1.0000 120 chr3L:26218517-26218637 1.0000 120 chr2R:4276414-4276534 1.0000 120 chr4:180435-180555 1.0000 120 chr2R:4825773-4825893 1.0000 120 chr2R:4578742-4578862 1.0000 120 chr4:1114692-1114812 1.0000 120 chr3L:24917105-24917225 1.0000 120 chr2R:4520244-4520364 1.0000 120 chr4:1120119-1120239 1.0000 120 chr4:783492-783612 1.0000 120 chr2R:2535227-2535347 1.0000 120 chr4:1222555-1222675 1.0000 120 chr3L:24195567-24195687 1.0000 120 chr2R:2554936-2555056 1.0000 120 chr3R:3880231-3880351 1.0000 120 chr2R:2531865-2531985 1.0000 120 chr3R:2489751-2489871 1.0000 120 chr3L:25799646-25799766 1.0000 120 chr2R:3182787-3182907 1.0000 120 chr4:200488-200608 1.0000 120 chr2R:5375366-5375486 1.0000 120 chr3L:25232291-25232411 1.0000 120 chr3L:27263464-27263584 1.0000 120 chr4:927725-927845 1.0000 120 chr4:117113-117233 1.0000 120 chr2R:4551108-4551228 1.0000 120 chr2R:4518771-4518891 1.0000 120 chr3L:27977718-27977838 1.0000 120 chr2R:5133409-5133529 1.0000 120 chr2R:4002893-4003013 1.0000 120 chr3R:5484588-5484708 1.0000 120 chr3L:23665666-23665786 1.0000 120 chr2L:22364059-22364179 1.0000 120 chr4:778997-779117 1.0000 120 chr2L:23077472-23077592 1.0000 120 chr4:1058922-1059042 1.0000 120 chr2R:5337604-5337724 1.0000 120 chr2R:4828712-4828832 1.0000 120 chr2R:4837534-4837654 1.0000 120 chr4:452992-453112 1.0000 120 chr2R:5331297-5331417 1.0000 120 chr3L:23429289-23429409 1.0000 120 chr2L:22180732-22180852 1.0000 120 chr3R:2975619-2975739 1.0000 120 chr3R:3844252-3844372 1.0000 120 chr2R:4534318-4534438 1.0000 120 chr3L:23347313-23347433 1.0000 120 chr3L:25966203-25966323 1.0000 120 chr3L:25967194-25967314 1.0000 120 chr2R:5633925-5634045 1.0000 120 chr2R:4249576-4249696 1.0000 120 chr3L:23384822-23384942 1.0000 120 chr2L:23071176-23071296 1.0000 120 chr3R:7081155-7081275 1.0000 120 chr4:953594-953714 1.0000 120 chr3L:24129541-24129661 1.0000 120 chr3R:1510866-1510986 1.0000 120 chr4:49619-49739 1.0000 120 chr4:1116849-1116969 1.0000 120 chr3L:23054606-23054726 1.0000 120 chr2R:1110198-1110318 1.0000 120 chr2R:1081684-1081804 1.0000 120 chr4:952955-953075 1.0000 120 chr2R:4736588-4736708 1.0000 120 chr4:952060-952180 1.0000 120 chr2R:2530809-2530929 1.0000 120 chr2R:4730916-4731036 1.0000 120 chr2R:2683023-2683143 1.0000 120 chr4:1267089-1267209 1.0000 120 chr2R:1352872-1352992 1.0000 120 chr3L:27277370-27277490 1.0000 120 chr4:178398-178518 1.0000 120 chr3L:24010347-24010467 1.0000 120 chr2R:2533168-2533288 1.0000 120 chr4:1046003-1046123 1.0000 120 chr3L:24290428-24290548 1.0000 120 chr2R:4638944-4639064 1.0000 120 chr4:370990-371110 1.0000 120 chr2R:4401470-4401590 1.0000 120 chr4:1180372-1180492 1.0000 120 chr2R:3384796-3384916 1.0000 120 chr2R:5076578-5076698 1.0000 120 chr3L:28014263-28014383 1.0000 120 chr3L:27141174-27141294 1.0000 120 chr2R:4200138-4200258 1.0000 120 chr3L:25255014-25255134 1.0000 120 chr2L:22698277-22698397 1.0000 120 chr4:1118967-1119087 1.0000 120 chr2L:22941505-22941625 1.0000 120 chr3L:27324265-27324385 1.0000 120 chr2R:5224495-5224615 1.0000 120 chr4:1037403-1037523 1.0000 120 chr2R:2526742-2526862 1.0000 120 chr2R:4389891-4390011 1.0000 120 chr3L:23096565-23096685 1.0000 120 chr3L:25802545-25802665 1.0000 120 chr2R:4824975-4825095 1.0000 120 chr3L:23895171-23895291 1.0000 120 chr3L:27270554-27270674 1.0000 120 chr2R:2683915-2684035 1.0000 120 chr2R:5305683-5305803 1.0000 120 chr2L:22702571-22702691 1.0000 120 chr2L:23070289-23070409 1.0000 120 chr3L:25967496-25967616 1.0000 120 chr3L:25116870-25116990 1.0000 120 chr2R:4984414-4984534 1.0000 120 chr2R:5258125-5258245 1.0000 120 chr3L:24289212-24289332 1.0000 120 chr3L:24953389-24953509 1.0000 120 chr3L:28013382-28013502 1.0000 120 chr3L:27130620-27130740 1.0000 120 chr2L:22977530-22977650 1.0000 120 chr4:456072-456192 1.0000 120 chr3L:27860220-27860340 1.0000 120 chr3R:2500829-2500949 1.0000 120 chr2L:22578361-22578481 1.0000 120 chr2R:4731793-4731913 1.0000 120 chr2R:5304035-5304155 1.0000 120 chr4:1011276-1011396 1.0000 120 chr2R:4618262-4618382 1.0000 120 chr2R:4172128-4172248 1.0000 120 chr3L:25877117-25877237 1.0000 120 chr2R:1683662-1683782 1.0000 120 chr4:187222-187342 1.0000 120 chr2R:1087464-1087584 1.0000 120 chr3R:3899780-3899900 1.0000 120 chr4:213689-213809 1.0000 120 chr3R:3787419-3787539 1.0000 120 chr3L:26010998-26011118 1.0000 120 chr2R:4584421-4584541 1.0000 120 chr2R:4677549-4677669 1.0000 120 chr3R:2473636-2473756 1.0000 120 chr4:184708-184828 1.0000 120 chr3L:25127109-25127229 1.0000 120 chr3L:27992133-27992253 1.0000 120 chr4:914524-914644 1.0000 120 chr2R:5257296-5257416 1.0000 120 chr4:1019053-1019173 1.0000 120 chr4:121422-121542 1.0000 120 chr3L:27323292-27323412 1.0000 120 chr3L:24007386-24007506 1.0000 120 chrX:11572952-11573072 1.0000 120 chr2L:22360290-22360410 1.0000 120 chr2R:4870902-4871022 1.0000 120 chr3R:3749558-3749678 1.0000 120 chr3L:24362010-24362130 1.0000 120 chr4:781877-781997 1.0000 120 chr4:309833-309953 1.0000 120 chr2R:1263638-1263758 1.0000 120 chr2R:5255722-5255842 1.0000 120 chr4:917588-917708 1.0000 120 chr2R:5209279-5209399 1.0000 120 chr2R:5305992-5306112 1.0000 120 chr3L:24075703-24075823 1.0000 120 chr2L:23371220-23371340 1.0000 120 chr2R:2847467-2847587 1.0000 120 chr2R:5399718-5399838 1.0000 120 chr2L:23002864-23002984 1.0000 120 chr4:186228-186348 1.0000 120 chr2R:4562736-4562856 1.0000 120 chr4:195120-195240 1.0000 120 chr2L:22763602-22763722 1.0000 120 chr2R:5397705-5397825 1.0000 120 chr4:1150542-1150662 1.0000 120 chr2R:4297264-4297384 1.0000 120 chr3R:2470124-2470244 1.0000 120 chr2R:1521653-1521773 1.0000 120 chr2R:5400577-5400697 1.0000 120 chr3L:25119739-25119859 1.0000 120 chr2L:23369109-23369229 1.0000 120 chr2R:4189925-4190045 1.0000 120 chr2L:23069211-23069331 1.0000 120 chr3R:1866994-1867114 1.0000 120 chr3L:23124503-23124623 1.0000 120 chr2R:5364949-5365069 1.0000 120 chr3R:2422328-2422448 1.0000 120 chr4:310401-310521 1.0000 120 chr2R:5400778-5400898 1.0000 120 chr4:131193-131313 1.0000 120 chr3L:23338482-23338602 1.0000 120 chr2R:5671313-5671433 1.0000 120 chr2R:4584648-4584768 1.0000 120 chr2L:22248400-22248520 1.0000 120 chr4:341805-341925 1.0000 120 chr3L:2586944-2587064 1.0000 120 chr3R:3033562-3033682 1.0000 120 chr2R:5653156-5653276 1.0000 120 chr3R:3033214-3033334 1.0000 120 chr3L:27173038-27173158 1.0000 120 chr2L:22248200-22248320 1.0000 120 chr4:1056628-1056748 1.0000 120 chr3L:27266239-27266359 1.0000 120 chr3L:26015270-26015390 1.0000 120 chr2R:1263885-1264005 1.0000 120 chr3L:27085897-27086017 1.0000 120 chr3R:3788393-3788513 1.0000 120 chr3R:3788627-3788747 1.0000 120 chr3R:7081703-7081823 1.0000 120 chr2R:4657284-4657404 1.0000 120 chr2R:4278070-4278190 1.0000 120 chr2R:5981320-5981440 1.0000 120 chr2L:23070502-23070622 1.0000 120 chr4:857564-857684 1.0000 120 chr4:444277-444397 1.0000 120 chr2R:1530096-1530216 1.0000 120 chr4:857318-857438 1.0000 120 chr3R:944362-944482 1.0000 120 chr2R:1514941-1515061 1.0000 120 chr2R:4730075-4730195 1.0000 120 chr2L:22567493-22567613 1.0000 120 chr4:656415-656535 1.0000 120 chrX:22373566-22373686 1.0000 120 chr2R:5129741-5129861 1.0000 120 chr2R:5086108-5086228 1.0000 120 chr4:290574-290694 1.0000 120 chr3L:25108207-25108327 1.0000 120 chr2R:4278291-4278411 1.0000 120 chr3L:27087033-27087153 1.0000 120 chr3L:23344832-23344952 1.0000 120 chr2L:22239494-22239614 1.0000 120 chr4:1027861-1027981 1.0000 120 chr4:1031324-1031444 1.0000 120 chr4:449598-449718 1.0000 120 chr2L:14370411-14370531 1.0000 120 chr2R:5666416-5666536 1.0000 120 chrX:11573270-11573390 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Suvar205/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Suvar205.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.265 C 0.229 G 0.231 T 0.275 Background letter frequencies (from file dataset with add-one prior applied): A 0.265 C 0.229 G 0.231 T 0.274 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCACTGAC MEME-1 width = 8 sites = 9 llr = 97 E-value = 3.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACTGAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a:::a: pos.-specific C aa:a:::a probability G ::::2a:: matrix T ::::8::: bits 2.1 ** * * * 1.9 **** *** 1.7 **** *** 1.5 **** *** Relative 1.3 **** *** Entropy 1.1 ******** (15.6 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCACTGAC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACTGAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:4584648-4584768 9 1.22e-05 CACAGACT CCACTGAC CCTTTCAACC chr2R:4297264-4297384 77 1.22e-05 CCTGTACCGA CCACTGAC TCCTCTCACC chr3R:2473636-2473756 26 1.22e-05 CCTTTGCCAA CCACTGAC TCCAGTGCCC chr2R:4584421-4584541 80 1.22e-05 CCTATCCCGA CCACTGAC TCCACTATCC chr3R:1510866-1510986 32 1.22e-05 CCTTTGCCGA CCACTGAC TCCACTAACA chr2R:3182787-3182907 69 1.22e-05 TCCACTAACT CCACTGAC CCTTTCAAAC chr2R:4520244-4520364 80 1.22e-05 ATCACTGACT CCACTGAC CCTTTCAACT chr2R:1263638-1263758 42 2.25e-05 tcccgaaaag ccacggac gactttaacc chr4:1120119-1120239 97 2.25e-05 TCATAGGCAA CCACGGAC AGAATGTGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACTGAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:4584648-4584768 1.2e-05 8_[+1]_104 chr2R:4297264-4297384 1.2e-05 76_[+1]_36 chr3R:2473636-2473756 1.2e-05 25_[+1]_87 chr2R:4584421-4584541 1.2e-05 79_[+1]_33 chr3R:1510866-1510986 1.2e-05 31_[+1]_81 chr2R:3182787-3182907 1.2e-05 68_[+1]_44 chr2R:4520244-4520364 1.2e-05 79_[+1]_33 chr2R:1263638-1263758 2.3e-05 41_[+1]_71 chr4:1120119-1120239 2.3e-05 96_[+1]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACTGAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACTGAC width=8 seqs=9 chr2R:4584648-4584768 ( 9) CCACTGAC 1 chr2R:4297264-4297384 ( 77) CCACTGAC 1 chr3R:2473636-2473756 ( 26) CCACTGAC 1 chr2R:4584421-4584541 ( 80) CCACTGAC 1 chr3R:1510866-1510986 ( 32) CCACTGAC 1 chr2R:3182787-3182907 ( 69) CCACTGAC 1 chr2R:4520244-4520364 ( 80) CCACTGAC 1 chr2R:1263638-1263758 ( 42) CCACGGAC 1 chr4:1120119-1120239 ( 97) CCACGGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACTGAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 3.1e+003 -982 212 -982 -982 -982 212 -982 -982 191 -982 -982 -982 -982 212 -982 -982 -982 -982 -6 150 -982 -982 211 -982 191 -982 -982 -982 -982 212 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACTGAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 3.1e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.222222 0.777778 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACTGAC MEME-1 regular expression -------------------------------------------------------------------------------- CCAC[TG]GAC -------------------------------------------------------------------------------- Time 7.55 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGGAACT MEME-2 width = 8 sites = 7 llr = 78 E-value = 4.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGGAACT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a::aa:: pos.-specific C a:::::a: probability G ::aa:::: matrix T :::::::a bits 2.1 * ** * 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.1 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGGAACT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGAACT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:1031324-1031444 8 1.43e-05 gagatca caggaact acgaaagcta chr3R:7081703-7081823 6 1.43e-05 gatct caggaact ataaaagcga chr3L:27860220-27860340 50 1.43e-05 gtcgagatct caggaact ataaaagcta chr4:1037403-1037523 62 1.43e-05 TTCTATAGTT CAGGAACT TACTTATCAA chr3L:25966203-25966323 105 1.43e-05 tctccacatt caggaact ttctgcac chr2R:5331297-5331417 97 1.43e-05 tctccacgtc caggaact ggctgaatca chr4:139532-139652 22 1.43e-05 gtcgaggtct caggaact ataaaagcaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGAACT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:1031324-1031444 1.4e-05 7_[+2]_105 chr3R:7081703-7081823 1.4e-05 5_[+2]_107 chr3L:27860220-27860340 1.4e-05 49_[+2]_63 chr4:1037403-1037523 1.4e-05 61_[+2]_51 chr3L:25966203-25966323 1.4e-05 104_[+2]_8 chr2R:5331297-5331417 1.4e-05 96_[+2]_16 chr4:139532-139652 1.4e-05 21_[+2]_91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGAACT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGGAACT width=8 seqs=7 chr4:1031324-1031444 ( 8) CAGGAACT 1 chr3R:7081703-7081823 ( 6) CAGGAACT 1 chr3L:27860220-27860340 ( 50) CAGGAACT 1 chr4:1037403-1037523 ( 62) CAGGAACT 1 chr3L:25966203-25966323 ( 105) CAGGAACT 1 chr2R:5331297-5331417 ( 97) CAGGAACT 1 chr4:139532-139652 ( 22) CAGGAACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGAACT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 4.1e+004 -945 212 -945 -945 191 -945 -945 -945 -945 -945 211 -945 -945 -945 211 -945 191 -945 -945 -945 191 -945 -945 -945 -945 212 -945 -945 -945 -945 -945 186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGAACT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.1e+004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGAACT MEME-2 regular expression -------------------------------------------------------------------------------- CAGGAACT -------------------------------------------------------------------------------- Time 13.79 secs. ******************************************************************************** ******************************************************************************** MOTIF CMACRCTC MEME-3 width = 8 sites = 12 llr = 120 E-value = 9.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CMACRCTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :6a:3::: pos.-specific C a4:a:a:a probability G ::::7::: matrix T ::::::a: bits 2.1 * * * * 1.9 * ** *** 1.7 * ** *** 1.5 * ** *** Relative 1.3 * ** *** Entropy 1.1 ******** (14.4 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAACGCTC consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACRCTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:4297264-4297384 47 1.22e-05 TCGGGCGAGG CAACGCTC GTCCTGGGGC chr2R:4584421-4584541 50 1.22e-05 CGGGTTGAGG CAACGCTC GGCCTGGGAC chr3R:2975619-2975739 102 1.22e-05 CGGGTTGAGG CAACGCTC GACGTGGGAC chr2R:4520244-4520364 41 1.22e-05 CGGGTTAAGG CAACGCTC GGCCTGGGAC chr3R:7081703-7081823 108 2.28e-05 gtaaaaaacg ccacgctc aaact chr2R:2526742-2526862 1 2.28e-05 . ccacgctc cggcacatct chr2R:4551108-4551228 57 2.28e-05 tatcgaggtc ccacgctc cggcacatct chr3R:3621976-3622096 103 2.28e-05 aaactttttg ccacgctc actctatcgc chr4:195120-195240 25 3.68e-05 AAAATTGACA CAACACTC AATAAGTTCA chr2R:5304035-5304155 38 3.68e-05 CCTGATGCAA CAACACTC CTGGAAAGGA chr2R:4249576-4249696 73 3.68e-05 aagcgaagat caacactc ctgatcaagc chr2R:1683662-1683782 97 4.89e-05 gtctaaccag ccacactc cgtcaaatgc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACRCTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:4297264-4297384 1.2e-05 46_[+3]_66 chr2R:4584421-4584541 1.2e-05 49_[+3]_63 chr3R:2975619-2975739 1.2e-05 101_[+3]_11 chr2R:4520244-4520364 1.2e-05 40_[+3]_72 chr3R:7081703-7081823 2.3e-05 107_[+3]_5 chr2R:2526742-2526862 2.3e-05 [+3]_112 chr2R:4551108-4551228 2.3e-05 56_[+3]_56 chr3R:3621976-3622096 2.3e-05 102_[+3]_10 chr4:195120-195240 3.7e-05 24_[+3]_88 chr2R:5304035-5304155 3.7e-05 37_[+3]_75 chr2R:4249576-4249696 3.7e-05 72_[+3]_40 chr2R:1683662-1683782 4.9e-05 96_[+3]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACRCTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CMACRCTC width=8 seqs=12 chr2R:4297264-4297384 ( 47) CAACGCTC 1 chr2R:4584421-4584541 ( 50) CAACGCTC 1 chr3R:2975619-2975739 ( 102) CAACGCTC 1 chr2R:4520244-4520364 ( 41) CAACGCTC 1 chr3R:7081703-7081823 ( 108) CCACGCTC 1 chr2R:2526742-2526862 ( 1) CCACGCTC 1 chr2R:4551108-4551228 ( 57) CCACGCTC 1 chr3R:3621976-3622096 ( 103) CCACGCTC 1 chr4:195120-195240 ( 25) CAACACTC 1 chr2R:5304035-5304155 ( 38) CAACACTC 1 chr2R:4249576-4249696 ( 73) CAACACTC 1 chr2R:1683662-1683782 ( 97) CCACACTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACRCTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3003 E= 9.4e+004 -1023 213 -1023 -1023 114 86 -1023 -1023 191 -1023 -1023 -1023 -1023 213 -1023 -1023 33 -1023 153 -1023 -1023 213 -1023 -1023 -1023 -1023 -1023 186 -1023 213 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACRCTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 9.4e+004 0.000000 1.000000 0.000000 0.000000 0.583333 0.416667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACRCTC MEME-3 regular expression -------------------------------------------------------------------------------- C[AC]AC[GA]CTC -------------------------------------------------------------------------------- Time 20.05 secs. ******************************************************************************** ******************************************************************************** MOTIF CARGCCAA MEME-4 width = 8 sites = 8 llr = 85 E-value = 2.4e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CARGCCAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a6:::aa pos.-specific C a:::aa:: probability G ::4a:::: matrix T :::::::: bits 2.1 * *** 1.9 ** ***** 1.7 ** ***** 1.5 ** ***** Relative 1.3 ** ***** Entropy 1.1 ******** (15.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAGCCAA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARGCCAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:27085897-27086017 101 1.37e-05 ttagcaacaa caagccaa attttaagtt chr3L:25255014-25255134 57 1.37e-05 ACTGCCTGAC CAAGCCAA CTTCCTGGCT chr2R:4200138-4200258 84 1.37e-05 tgcatagtac caagccaa tgccgttacg chr4:178398-178518 46 1.37e-05 TAGTTTCTTC CAAGCCAA GCCGACTTAA chr3R:7081155-7081275 105 1.37e-05 gatcgaggtg caagccaa ggtacttt chr2R:2530809-2530929 63 2.56e-05 AAGGTGGTCC CAGGCCAA GCGTTGCCTC chr4:952955-953075 108 2.56e-05 ggcccacaaa caggccaa aactg chr3L:24917105-24917225 47 2.56e-05 ggacagactt caggccaa cggatggcca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARGCCAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:27085897-27086017 1.4e-05 100_[+4]_12 chr3L:25255014-25255134 1.4e-05 56_[+4]_56 chr2R:4200138-4200258 1.4e-05 83_[+4]_29 chr4:178398-178518 1.4e-05 45_[+4]_67 chr3R:7081155-7081275 1.4e-05 104_[+4]_8 chr2R:2530809-2530929 2.6e-05 62_[+4]_50 chr4:952955-953075 2.6e-05 107_[+4]_5 chr3L:24917105-24917225 2.6e-05 46_[+4]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARGCCAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CARGCCAA width=8 seqs=8 chr3L:27085897-27086017 ( 101) CAAGCCAA 1 chr3L:25255014-25255134 ( 57) CAAGCCAA 1 chr2R:4200138-4200258 ( 84) CAAGCCAA 1 chr4:178398-178518 ( 46) CAAGCCAA 1 chr3R:7081155-7081275 ( 105) CAAGCCAA 1 chr2R:2530809-2530929 ( 63) CAGGCCAA 1 chr4:952955-953075 ( 108) CAGGCCAA 1 chr3L:24917105-24917225 ( 47) CAGGCCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARGCCAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 2.4e+005 -965 212 -965 -965 191 -965 -965 -965 124 -965 70 -965 -965 -965 211 -965 -965 212 -965 -965 -965 212 -965 -965 191 -965 -965 -965 191 -965 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARGCCAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.4e+005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.625000 0.000000 0.375000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARGCCAA MEME-4 regular expression -------------------------------------------------------------------------------- CA[AG]GCCAA -------------------------------------------------------------------------------- Time 26.24 secs. ******************************************************************************** ******************************************************************************** MOTIF CACGCCAG MEME-5 width = 8 sites = 4 llr = 46 E-value = 2.4e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACGCCAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a::::a: pos.-specific C a:a:aa:: probability G :::a:::a matrix T :::::::: bits 2.1 * **** * 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.6 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACGCCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCCAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:4584648-4584768 26 1.03e-05 CCCTTTCAAC CACGCCAG GTCCCCGTTC chr3R:2473636-2473756 52 1.03e-05 CCCTTTTAAC CACGCCAG GTCCTTGTTT chr3L:27130620-27130740 55 1.03e-05 CCCCTTCGAA CACGCCAG TTTCTTGTTC chr2R:3182787-3182907 86 1.03e-05 CCCTTTCAAA CACGCCAG GGCCTTGCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCCAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:4584648-4584768 1e-05 25_[+5]_87 chr3R:2473636-2473756 1e-05 51_[+5]_61 chr3L:27130620-27130740 1e-05 54_[+5]_58 chr2R:3182787-3182907 1e-05 85_[+5]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCCAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACGCCAG width=8 seqs=4 chr2R:4584648-4584768 ( 26) CACGCCAG 1 chr3R:2473636-2473756 ( 52) CACGCCAG 1 chr3L:27130620-27130740 ( 55) CACGCCAG 1 chr2R:3182787-3182907 ( 86) CACGCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCCAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 2.4e+005 -865 212 -865 -865 191 -865 -865 -865 -865 212 -865 -865 -865 -865 211 -865 -865 212 -865 -865 -865 212 -865 -865 191 -865 -865 -865 -865 -865 211 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCCAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 2.4e+005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCCAG MEME-5 regular expression -------------------------------------------------------------------------------- CACGCCAG -------------------------------------------------------------------------------- Time 32.44 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:5396616-5396736 6.11e-01 120 chr2R:4280723-4280843 3.76e-01 120 chr2R:4277219-4277339 6.75e-01 120 chr3R:2531943-2532063 9.25e-02 120 chr3R:2526972-2527092 2.88e-01 120 chr2L:23370004-23370124 2.57e-01 120 chr2L:23074703-23074823 6.98e-01 120 chr4:926306-926426 9.38e-01 120 chr2R:5087947-5088067 8.84e-01 120 chr4:568695-568815 9.11e-01 120 chr3R:3621976-3622096 6.75e-02 102_[+3(2.28e-05)]_10 chr2L:23175574-23175694 9.80e-01 120 chr4:1270852-1270972 7.95e-01 120 chr2R:4795365-4795485 9.29e-01 120 chr2R:2849238-2849358 9.44e-01 120 chr2R:5073989-5074109 4.27e-01 120 chr4:576128-576248 2.61e-01 120 chr2R:1599758-1599878 6.82e-01 120 chr4:139532-139652 2.48e-03 21_[+2(1.43e-05)]_91 chr2R:5343630-5343750 7.42e-01 120 chr4:197950-198070 8.18e-01 120 chr3L:23087992-23088112 8.85e-01 120 chr3L:23083105-23083225 5.30e-01 120 chr3L:24974566-24974686 9.55e-01 120 chr3L:26218517-26218637 3.55e-01 120 chr2R:4276414-4276534 2.42e-01 120 chr4:180435-180555 6.84e-02 120 chr2R:4825773-4825893 9.99e-01 120 chr2R:4578742-4578862 8.77e-01 120 chr4:1114692-1114812 7.82e-01 120 chr3L:24917105-24917225 1.44e-02 46_[+4(2.56e-05)]_66 chr2R:4520244-4520364 4.43e-06 40_[+3(1.22e-05)]_31_[+1(1.22e-05)]_\ 33 chr4:1120119-1120239 3.69e-02 96_[+1(2.25e-05)]_16 chr4:783492-783612 9.56e-01 120 chr2R:2535227-2535347 5.61e-01 120 chr4:1222555-1222675 8.18e-01 120 chr3L:24195567-24195687 4.94e-01 120 chr2R:2554936-2555056 5.24e-01 120 chr3R:3880231-3880351 9.70e-01 120 chr2R:2531865-2531985 9.96e-01 120 chr3R:2489751-2489871 9.87e-01 120 chr3L:25799646-25799766 8.81e-01 120 chr2R:3182787-3182907 4.49e-05 68_[+1(1.22e-05)]_9_[+5(1.03e-05)]_\ 27 chr4:200488-200608 5.39e-01 120 chr2R:5375366-5375486 8.39e-01 120 chr3L:25232291-25232411 3.76e-01 120 chr3L:27263464-27263584 9.29e-01 120 chr4:927725-927845 7.32e-01 120 chr4:117113-117233 1.48e-01 120 chr2R:4551108-4551228 4.91e-02 56_[+3(2.28e-05)]_56 chr2R:4518771-4518891 3.59e-01 120 chr3L:27977718-27977838 6.84e-01 120 chr2R:5133409-5133529 9.89e-01 120 chr2R:4002893-4003013 6.45e-01 120 chr3R:5484588-5484708 9.97e-01 120 chr3L:23665666-23665786 4.83e-01 120 chr2L:22364059-22364179 7.45e-01 120 chr4:778997-779117 9.74e-01 120 chr2L:23077472-23077592 4.72e-01 120 chr4:1058922-1059042 7.83e-01 120 chr2R:5337604-5337724 4.27e-01 120 chr2R:4828712-4828832 9.94e-01 120 chr2R:4837534-4837654 7.59e-01 120 chr4:452992-453112 1.58e-01 120 chr2R:5331297-5331417 4.16e-02 96_[+2(1.43e-05)]_16 chr3L:23429289-23429409 4.86e-01 120 chr2L:22180732-22180852 2.99e-01 120 chr3R:2975619-2975739 2.09e-03 101_[+3(1.22e-05)]_11 chr3R:3844252-3844372 6.73e-01 120 chr2R:4534318-4534438 5.74e-02 120 chr3L:23347313-23347433 9.48e-01 120 chr3L:25966203-25966323 2.33e-02 104_[+2(1.43e-05)]_8 chr3L:25967194-25967314 1.33e-01 120 chr2R:5633925-5634045 7.30e-01 120 chr2R:4249576-4249696 3.00e-02 72_[+3(3.68e-05)]_40 chr3L:23384822-23384942 3.97e-01 120 chr2L:23071176-23071296 9.87e-01 120 chr3R:7081155-7081275 4.31e-02 104_[+4(1.37e-05)]_8 chr4:953594-953714 6.22e-01 120 chr3L:24129541-24129661 1.73e-01 120 chr3R:1510866-1510986 9.69e-05 31_[+1(1.22e-05)]_81 chr4:49619-49739 9.97e-01 120 chr4:1116849-1116969 9.99e-01 120 chr3L:23054606-23054726 8.03e-01 120 chr2R:1110198-1110318 9.84e-01 120 chr2R:1081684-1081804 3.08e-01 120 chr4:952955-953075 2.01e-03 107_[+4(2.56e-05)]_5 chr2R:4736588-4736708 1.22e-01 120 chr4:952060-952180 5.20e-01 120 chr2R:2530809-2530929 1.18e-01 62_[+4(2.56e-05)]_50 chr2R:4730916-4731036 9.57e-01 120 chr2R:2683023-2683143 9.98e-01 120 chr4:1267089-1267209 3.84e-01 120 chr2R:1352872-1352992 1.56e-01 120 chr3L:27277370-27277490 7.66e-01 120 chr4:178398-178518 1.06e-01 45_[+4(1.37e-05)]_67 chr3L:24010347-24010467 9.00e-01 120 chr2R:2533168-2533288 9.51e-01 120 chr4:1046003-1046123 9.79e-01 120 chr3L:24290428-24290548 8.32e-03 120 chr2R:4638944-4639064 9.96e-01 120 chr4:370990-371110 9.16e-01 120 chr2R:4401470-4401590 4.41e-02 120 chr4:1180372-1180492 7.54e-01 120 chr2R:3384796-3384916 9.86e-01 120 chr2R:5076578-5076698 7.65e-01 120 chr3L:28014263-28014383 9.89e-01 120 chr3L:27141174-27141294 1.31e-02 93_[+5(6.74e-05)]_19 chr2R:4200138-4200258 1.50e-02 83_[+4(1.37e-05)]_29 chr3L:25255014-25255134 9.93e-03 56_[+4(1.37e-05)]_56 chr2L:22698277-22698397 8.74e-01 120 chr4:1118967-1119087 1.00e+00 120 chr2L:22941505-22941625 1.44e-01 120 chr3L:27324265-27324385 4.17e-01 120 chr2R:5224495-5224615 6.26e-01 120 chr4:1037403-1037523 7.50e-02 61_[+2(1.43e-05)]_51 chr2R:2526742-2526862 4.86e-02 [+3(2.28e-05)]_112 chr2R:4389891-4390011 8.26e-01 120 chr3L:23096565-23096685 9.99e-01 120 chr3L:25802545-25802665 1.27e-01 120 chr2R:4824975-4825095 7.52e-01 120 chr3L:23895171-23895291 8.19e-01 120 chr3L:27270554-27270674 7.07e-01 120 chr2R:2683915-2684035 9.97e-01 120 chr2R:5305683-5305803 5.77e-01 120 chr2L:22702571-22702691 9.17e-01 120 chr2L:23070289-23070409 2.48e-01 120 chr3L:25967496-25967616 4.91e-01 120 chr3L:25116870-25116990 8.80e-01 120 chr2R:4984414-4984534 1.11e-01 120 chr2R:5258125-5258245 5.71e-01 120 chr3L:24289212-24289332 2.44e-01 120 chr3L:24953389-24953509 3.34e-01 120 chr3L:28013382-28013502 1.60e-01 120 chr3L:27130620-27130740 1.48e-03 54_[+5(1.03e-05)]_58 chr2L:22977530-22977650 9.98e-01 120 chr4:456072-456192 6.89e-01 120 chr3L:27860220-27860340 4.07e-02 49_[+2(1.43e-05)]_63 chr3R:2500829-2500949 9.09e-01 120 chr2L:22578361-22578481 2.60e-01 120 chr2R:4731793-4731913 5.99e-01 120 chr2R:5304035-5304155 6.56e-02 37_[+3(3.68e-05)]_75 chr4:1011276-1011396 9.41e-01 120 chr2R:4618262-4618382 9.73e-01 120 chr2R:4172128-4172248 2.10e-01 120 chr3L:25877117-25877237 4.94e-01 120 chr2R:1683662-1683782 9.81e-02 96_[+3(4.89e-05)]_16 chr4:187222-187342 6.63e-01 120 chr2R:1087464-1087584 9.72e-01 120 chr3R:3899780-3899900 6.84e-01 120 chr4:213689-213809 3.40e-02 120 chr3R:3787419-3787539 9.78e-01 120 chr3L:26010998-26011118 9.98e-01 120 chr2R:4584421-4584541 1.86e-05 49_[+3(1.22e-05)]_22_[+1(1.22e-05)]_\ 33 chr2R:4677549-4677669 8.39e-01 120 chr3R:2473636-2473756 4.49e-05 25_[+1(1.22e-05)]_18_[+5(1.03e-05)]_\ 61 chr4:184708-184828 8.98e-01 120 chr3L:25127109-25127229 2.28e-01 120 chr3L:27992133-27992253 5.77e-01 120 chr4:914524-914644 9.88e-01 120 chr2R:5257296-5257416 8.93e-01 120 chr4:1019053-1019173 7.52e-01 120 chr4:121422-121542 1.68e-01 120 chr3L:27323292-27323412 8.03e-01 120 chr3L:24007386-24007506 8.57e-01 120 chrX:11572952-11573072 9.99e-01 120 chr2L:22360290-22360410 7.72e-01 120 chr2R:4870902-4871022 5.13e-01 120 chr3R:3749558-3749678 9.08e-01 120 chr3L:24362010-24362130 1.38e-01 120 chr4:781877-781997 9.13e-01 120 chr4:309833-309953 8.86e-01 120 chr2R:1263638-1263758 1.27e-02 41_[+1(2.25e-05)]_71 chr2R:5255722-5255842 9.11e-01 120 chr4:917588-917708 4.37e-01 120 chr2R:5209279-5209399 5.26e-02 120 chr2R:5305992-5306112 9.85e-01 120 chr3L:24075703-24075823 4.10e-01 120 chr2L:23371220-23371340 9.91e-01 120 chr2R:2847467-2847587 9.48e-01 120 chr2R:5399718-5399838 5.16e-01 120 chr2L:23002864-23002984 2.91e-01 120 chr4:186228-186348 2.56e-03 120 chr2R:4562736-4562856 8.26e-01 120 chr4:195120-195240 1.67e-01 24_[+3(3.68e-05)]_88 chr2L:22763602-22763722 7.71e-01 120 chr2R:5397705-5397825 9.72e-02 41_[+3(9.88e-05)]_71 chr4:1150542-1150662 3.01e-01 120 chr2R:4297264-4297384 3.18e-06 46_[+3(1.22e-05)]_22_[+1(1.22e-05)]_\ 18_[+4(5.16e-05)]_10 chr3R:2470124-2470244 1.19e-01 120 chr2R:1521653-1521773 9.75e-01 120 chr2R:5400577-5400697 7.75e-01 120 chr3L:25119739-25119859 7.68e-01 120 chr2L:23369109-23369229 9.88e-01 120 chr2R:4189925-4190045 9.94e-01 120 chr2L:23069211-23069331 9.86e-01 120 chr3R:1866994-1867114 1.74e-01 120 chr3L:23124503-23124623 2.86e-01 120 chr2R:5364949-5365069 5.38e-01 120 chr3R:2422328-2422448 1.64e-01 120 chr4:310401-310521 9.76e-01 120 chr2R:5400778-5400898 7.97e-01 120 chr4:131193-131313 4.86e-01 120 chr3L:23338482-23338602 9.27e-01 120 chr2R:5671313-5671433 9.99e-01 120 chr2R:4584648-4584768 7.87e-05 8_[+1(1.22e-05)]_9_[+5(1.03e-05)]_\ 87 chr2L:22248400-22248520 9.58e-01 120 chr4:341805-341925 9.38e-01 120 chr3L:2586944-2587064 6.34e-01 120 chr3R:3033562-3033682 1.00e+00 120 chr2R:5653156-5653276 1.28e-01 120 chr3R:3033214-3033334 1.00e+00 120 chr3L:27173038-27173158 1.00e+00 120 chr2L:22248200-22248320 6.04e-01 120 chr4:1056628-1056748 3.40e-01 120 chr3L:27266239-27266359 9.86e-01 120 chr3L:26015270-26015390 8.76e-01 120 chr2R:1263885-1264005 9.73e-01 120 chr3L:27085897-27086017 7.99e-02 100_[+4(1.37e-05)]_12 chr3R:3788393-3788513 1.00e+00 120 chr3R:3788627-3788747 1.71e-01 120 chr3R:7081703-7081823 1.19e-04 5_[+2(1.43e-05)]_94_[+3(2.28e-05)]_\ 5 chr2R:4657284-4657404 3.52e-01 120 chr2R:4278070-4278190 9.37e-01 120 chr2R:5981320-5981440 9.72e-01 120 chr2L:23070502-23070622 8.72e-01 120 chr4:857564-857684 1.15e-01 120 chr4:444277-444397 9.99e-01 120 chr2R:1530096-1530216 9.67e-02 120 chr4:857318-857438 9.16e-01 120 chr3R:944362-944482 1.65e-01 120 chr2R:1514941-1515061 7.83e-02 120 chr2R:4730075-4730195 3.73e-01 120 chr2L:22567493-22567613 8.24e-01 120 chr4:656415-656535 7.45e-01 120 chrX:22373566-22373686 6.59e-01 120 chr2R:5129741-5129861 8.13e-01 120 chr2R:5086108-5086228 1.39e-01 120 chr4:290574-290694 7.09e-01 120 chr3L:25108207-25108327 6.10e-01 120 chr2R:4278291-4278411 8.81e-01 120 chr3L:27087033-27087153 9.86e-01 120 chr3L:23344832-23344952 1.35e-01 120 chr2L:22239494-22239614 8.49e-01 120 chr4:1027861-1027981 7.52e-01 120 chr4:1031324-1031444 2.97e-04 7_[+2(1.43e-05)]_105 chr4:449598-449718 8.68e-01 120 chr2L:14370411-14370531 2.51e-01 120 chr2R:5666416-5666536 4.78e-01 120 chrX:11573270-11573390 9.14e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************