******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Suvar2-10.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:21373938-21374058 1.0000 120 chr3R:16206719-16206839 1.0000 120 chrX:17658345-17658465 1.0000 120 chr2L:10239034-10239154 1.0000 120 chr3R:13660844-13660964 1.0000 120 chr3R:14278349-14278469 1.0000 120 chrX:5083322-5083442 1.0000 120 chr2R:5701582-5701702 1.0000 120 chr2L:10239235-10239355 1.0000 120 chr3R:21618904-21619024 1.0000 120 chr3R:6816729-6816849 1.0000 120 chr2L:10227124-10227244 1.0000 120 chr4:1123710-1123830 1.0000 120 chr3R:11750615-11750735 1.0000 120 chr3R:32052257-32052377 1.0000 120 chr2R:10437617-10437737 1.0000 120 chr3R:4400225-4400345 1.0000 120 chr2R:14215206-14215326 1.0000 120 chr3R:25491250-25491370 1.0000 120 chrX:18657443-18657563 1.0000 120 chr3R:15290110-15290230 1.0000 120 chr3R:14279766-14279886 1.0000 120 chr3L:11253229-11253349 1.0000 120 chr2R:16096756-16096876 1.0000 120 chr3R:21855419-21855539 1.0000 120 chr2R:4471304-4471424 1.0000 120 chr2R:12166043-12166163 1.0000 120 chr3L:16129026-16129146 1.0000 120 chr2L:10263624-10263744 1.0000 120 chr3L:13115031-13115151 1.0000 120 chr2R:13940469-13940589 1.0000 120 chr2L:10422944-10423064 1.0000 120 chr2R:22508193-22508313 1.0000 120 chr3L:753896-754016 1.0000 120 chr2R:24062754-24062874 1.0000 120 chr2R:9387084-9387204 1.0000 120 chr3L:11556780-11556900 1.0000 120 chr3L:4101898-4102018 1.0000 120 chr2R:24060051-24060171 1.0000 120 chr2L:7790726-7790846 1.0000 120 chr3R:21612262-21612382 1.0000 120 chr3R:20829536-20829656 1.0000 120 chr3L:9125968-9126088 1.0000 120 chr4:505993-506113 1.0000 120 chr3L:18757522-18757642 1.0000 120 chr3R:18311078-18311198 1.0000 120 chr3R:4232528-4232648 1.0000 120 chr3L:5181584-5181704 1.0000 120 chr2R:8152696-8152816 1.0000 120 chr2R:13940669-13940789 1.0000 120 chrX:13754221-13754341 1.0000 120 chr2R:16829328-16829448 1.0000 120 chr3R:4400429-4400549 1.0000 120 chr2R:22684841-22684961 1.0000 120 chr2R:18374484-18374604 1.0000 120 chr2L:10423143-10423263 1.0000 120 chrX:12724749-12724869 1.0000 120 chr2L:15272345-15272465 1.0000 120 chr2L:4032349-4032469 1.0000 120 chr4:663484-663604 1.0000 120 chrX:15593971-15594091 1.0000 120 chr2L:10314703-10314823 1.0000 120 chr3R:31216401-31216521 1.0000 120 chr2R:21194481-21194601 1.0000 120 chr3L:11409967-11410087 1.0000 120 chr3R:24580660-24580780 1.0000 120 chr3L:13046602-13046722 1.0000 120 chr2R:9554672-9554792 1.0000 120 chr2L:10314498-10314618 1.0000 120 chr2R:10047889-10048009 1.0000 120 chr3L:3409402-3409522 1.0000 120 chr2R:1264255-1264375 1.0000 120 chrX:15890407-15890527 1.0000 120 chr3R:24580862-24580982 1.0000 120 chr2L:5044937-5045057 1.0000 120 chr2R:19232002-19232122 1.0000 120 chr2L:22239732-22239852 1.0000 120 chr2R:5363214-5363334 1.0000 120 chrX:4956071-4956191 1.0000 120 chr3R:4232754-4232874 1.0000 120 chr3L:19231336-19231456 1.0000 120 chrX:141705-141825 1.0000 120 chr2R:21716752-21716872 1.0000 120 chr3L:19045855-19045975 1.0000 120 chr3R:20950146-20950266 1.0000 120 chr2R:18349575-18349695 1.0000 120 chr3R:25167477-25167597 1.0000 120 chr2L:871262-871382 1.0000 120 chr3L:17447860-17447980 1.0000 120 chr3L:14970180-14970300 1.0000 120 chr3R:18244197-18244317 1.0000 120 chr3R:20950381-20950501 1.0000 120 chr2L:19036082-19036202 1.0000 120 chr3L:14760720-14760840 1.0000 120 chr2R:5251099-5251219 1.0000 120 chr3R:31607950-31608070 1.0000 120 chr2L:10232081-10232201 1.0000 120 chr2R:5350605-5350725 1.0000 120 chr3R:13804183-13804303 1.0000 120 chr3L:14992646-14992766 1.0000 120 chr3L:23714824-23714944 1.0000 120 chr2R:11633893-11634013 1.0000 120 chr4:482423-482543 1.0000 120 chr3R:6000342-6000462 1.0000 120 chr3L:14193887-14194007 1.0000 120 chr2L:16492370-16492490 1.0000 120 chrX:13277654-13277774 1.0000 120 chrX:6853441-6853561 1.0000 120 chr2L:5042261-5042381 1.0000 120 chr2L:14494118-14494238 1.0000 120 chr3R:14026841-14026961 1.0000 120 chr4:67539-67659 1.0000 120 chr3R:15094179-15094299 1.0000 120 chr2R:8859956-8860076 1.0000 120 chr2R:6811439-6811559 1.0000 120 chr2L:7790944-7791064 1.0000 120 chr3L:17448088-17448208 1.0000 120 chr4:663283-663403 1.0000 120 chr2R:15155094-15155214 1.0000 120 chr2L:1653378-1653498 1.0000 120 chr2R:13015150-13015270 1.0000 120 chr3L:6797454-6797574 1.0000 120 chr3L:4000752-4000872 1.0000 120 chr4:1181865-1181985 1.0000 120 chr3R:29868380-29868500 1.0000 120 chr2L:1619348-1619468 1.0000 120 chr3L:23095780-23095900 1.0000 120 chr3L:3413723-3413843 1.0000 120 chr3R:10265227-10265347 1.0000 120 chr3L:19234218-19234338 1.0000 120 chr3L:19181139-19181259 1.0000 120 chr3L:18273237-18273357 1.0000 120 chr3L:19088093-19088213 1.0000 120 chrX:12547372-12547492 1.0000 120 chr3L:15034410-15034530 1.0000 120 chrX:9082692-9082812 1.0000 120 chr3L:17995102-17995222 1.0000 120 chr2L:14234460-14234580 1.0000 120 chrX:17656927-17657047 1.0000 120 chr3R:23212389-23212509 1.0000 120 chr3L:4286911-4287031 1.0000 120 chr2R:13614102-13614222 1.0000 120 chr3R:14351501-14351621 1.0000 120 chr2L:20808312-20808432 1.0000 120 chrX:12724960-12725080 1.0000 120 chr3L:8853134-8853254 1.0000 120 chr2R:4788660-4788780 1.0000 120 chr3L:11246821-11246941 1.0000 120 chrX:10763040-10763160 1.0000 120 chr2L:9521895-9522015 1.0000 120 chr3L:20188340-20188460 1.0000 120 chr3R:16214047-16214167 1.0000 120 chr2R:7490062-7490182 1.0000 120 chr2L:1656810-1656930 1.0000 120 chr3L:10661249-10661369 1.0000 120 chr3L:10818330-10818450 1.0000 120 chr2L:10226862-10226982 1.0000 120 chr2L:10543244-10543364 1.0000 120 chrX:5904598-5904718 1.0000 120 chr3R:28580666-28580786 1.0000 120 chr3L:14328473-14328593 1.0000 120 chr2R:11198646-11198766 1.0000 120 chr3R:9343045-9343165 1.0000 120 chr3R:6406156-6406276 1.0000 120 chr2R:5293866-5293986 1.0000 120 chr3R:8577755-8577875 1.0000 120 chr3R:24233847-24233967 1.0000 120 chr3R:14711575-14711695 1.0000 120 chr3R:27925242-27925362 1.0000 120 chr2L:10221102-10221222 1.0000 120 chrX:17581941-17582061 1.0000 120 chr3L:19087866-19087986 1.0000 120 chr3L:16714209-16714329 1.0000 120 chr2L:6967827-6967947 1.0000 120 chrX:17124991-17125111 1.0000 120 chr2L:19463552-19463672 1.0000 120 chr2R:12925530-12925650 1.0000 120 chr3R:25968592-25968712 1.0000 120 chr2L:7827539-7827659 1.0000 120 chr2R:5122532-5122652 1.0000 120 chr2R:5307143-5307263 1.0000 120 chr3L:4355427-4355547 1.0000 120 chr3L:3544092-3544212 1.0000 120 chr2L:8087335-8087455 1.0000 120 chrX:9554173-9554293 1.0000 120 chr2R:16096966-16097086 1.0000 120 chr2R:14136820-14136940 1.0000 120 chr3L:21859851-21859971 1.0000 120 chr3R:15677834-15677954 1.0000 120 chr3L:23125743-23125863 1.0000 120 chr3L:2845268-2845388 1.0000 120 chr2L:19019241-19019361 1.0000 120 chr3R:13016531-13016651 1.0000 120 chr3L:15275549-15275669 1.0000 120 chrX:19866864-19866984 1.0000 120 chr3R:20311024-20311144 1.0000 120 chr2R:15322206-15322326 1.0000 120 chr3R:15128910-15129030 1.0000 120 chr2R:18435094-18435214 1.0000 120 chr2L:9996604-9996724 1.0000 120 chr3R:15139523-15139643 1.0000 120 chr3R:8349555-8349675 1.0000 120 chr3R:30865540-30865660 1.0000 120 chr4:670913-671033 1.0000 120 chr3R:9740787-9740907 1.0000 120 chr3R:14386189-14386309 1.0000 120 chrX:9135242-9135362 1.0000 120 chrX:14247512-14247632 1.0000 120 chr3R:9877795-9877915 1.0000 120 chrX:5966144-5966264 1.0000 120 chr3R:25184255-25184375 1.0000 120 chr3L:16149962-16150082 1.0000 120 chr3R:16215143-16215263 1.0000 120 chr2L:18965858-18965978 1.0000 120 chr2R:12951588-12951708 1.0000 120 chr2L:14691035-14691155 1.0000 120 chrX:15760863-15760983 1.0000 120 chr3L:16038053-16038173 1.0000 120 chr3L:20186507-20186627 1.0000 120 chrX:3704264-3704384 1.0000 120 chr2R:10806833-10806953 1.0000 120 chr3R:3789732-3789852 1.0000 120 chr3R:9551054-9551174 1.0000 120 chr3L:18030049-18030169 1.0000 120 chr3L:15034610-15034730 1.0000 120 chr2R:9660205-9660325 1.0000 120 chr4:1197065-1197185 1.0000 120 chrX:1879997-1880117 1.0000 120 chr2R:9711921-9712041 1.0000 120 chr2L:22121633-22121753 1.0000 120 chr3R:10139949-10140069 1.0000 120 chr3R:18168432-18168552 1.0000 120 chr3R:8362635-8362755 1.0000 120 chr3R:19875568-19875688 1.0000 120 chr3R:6414814-6414934 1.0000 120 chr2L:14497868-14497988 1.0000 120 chr2L:18625509-18625629 1.0000 120 chr3L:381110-381230 1.0000 120 chrX:11816622-11816742 1.0000 120 chr3L:11528456-11528576 1.0000 120 chr2R:5701900-5702020 1.0000 120 chr3R:15129111-15129231 1.0000 120 chr2R:21706414-21706534 1.0000 120 chr2R:1345197-1345317 1.0000 120 chr2R:11176444-11176564 1.0000 120 chr2L:6795091-6795211 1.0000 120 chr3R:19165218-19165338 1.0000 120 chr3L:6885764-6885884 1.0000 120 chr3R:4732333-4732453 1.0000 120 chr3R:21188251-21188371 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Suvar2-10/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Suvar2-10.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.337 C 0.164 G 0.164 T 0.335 Background letter frequencies (from file dataset with add-one prior applied): A 0.337 C 0.164 G 0.164 T 0.335 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SGCTGSSS MEME-1 width = 8 sites = 34 llr = 295 E-value = 1.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGCTGSSS MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::3:::: pos.-specific C 5372:636 probability G 573:a464 matrix T :::6::1: bits 2.6 * 2.4 * 2.1 * 1.8 ** * Relative 1.6 *** ** * Entropy 1.3 *** **** (12.5 bits) 1.0 *** **** 0.8 *** **** 0.5 *** **** 0.3 ******** 0.0 -------- Multilevel CGCTGCGC consensus GCGA GCG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCTGSSS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:6414814-6414934 19 1.07e-06 GCATTCTTGG CGCTGCGC TGTTGCCGCT chr3R:9551054-9551174 32 1.07e-06 TTGGCAATTA CGCTGCGC TGTGGCGTTT chr3R:9877795-9877915 44 3.73e-06 CGGCTGACTG CGCTGCGG TGGGAAAGAG chr2L:1656810-1656930 111 1.33e-05 TTTCGGTGAG CGCAGCGC AA chrX:13277654-13277774 93 1.33e-05 TAGGACTTCA GGCTGGGC ACTATCACTG chr3L:10818330-10818450 38 2.03e-05 AAAAATCCCT CGCTGGGG GTGACTTTTT chr3L:16129026-16129146 15 2.03e-05 GCTTAACAGA CGCTGGGG AGCGGAGTTG chr2L:10543244-10543364 34 2.34e-05 CTGGTGGCTT CGGTGCGG CATTCAGGTG chr2R:6811439-6811559 62 2.88e-05 GTGCGCGAAA GGCCGGGC GGGCGTCGTT chr3R:15094179-15094299 9 3.62e-05 TCTTGCGG GGGTGCGG CGCATTTAGC chr2R:21194481-21194601 83 3.62e-05 ttttttCAGT CCCTGGGC AAATGTTTTC chr3R:31216401-31216521 91 3.62e-05 GAGCCTTGGT GGGCGCGC ATGGAGATCC chr3L:16714209-16714329 75 4.26e-05 CTTTGGCGGC GGCAGCGG CGCGGCAGAG chr3L:4286911-4287031 112 4.26e-05 ACTTCAGTGT CGCAGCCC T chr3L:14760720-14760840 50 4.26e-05 ATCATGGGAT CGCCGGGG TAAACCAGAA chr3R:18168432-18168552 70 5.01e-05 AGTACTTGCT GGGTGCCC CAACAATACT chr3L:753896-754016 57 5.01e-05 ACCCGCAGCT GCCTgccc acccacttcc chr3R:19875568-19875688 89 5.60e-05 AAGTTCCAGT GCGTGCGC GTCGAATCTG chr3L:19181139-19181259 29 5.60e-05 AAATAAATCG GGCAGGGC GGGAAAATAT chr3R:18244197-18244317 26 5.60e-05 CATAAACGCT GCGTGCGC CAAAACGAGA chr3R:21855419-21855539 104 5.60e-05 ATCAGCTTTG CGCTGGCG GAGATCTGG chr3R:18311078-18311198 21 6.55e-05 agacccagta gccagCGC AAAAACAACT chrX:19866864-19866984 31 8.15e-05 ataaaAGTGC GCCCGCCC GAAAGTAGGA chr3L:8853134-8853254 18 8.15e-05 TTAACAATCG CGGAGCGG GGGGAATCAG chrX:12547372-12547492 88 8.15e-05 CGGAATCCAC GGGTGCCG GGTATAACAA chr2L:10232081-10232201 113 8.90e-05 CATGTTGATC CGCAGGCC chr3L:19087866-19087986 35 1.15e-04 CTGCTTTCGG CCCTGGCG CGTGGGAGGC chr3R:15677834-15677954 27 1.20e-04 TATATTTGCT GCGAGCGC ATGATTAATT chr2R:5350605-5350725 52 1.28e-04 GCACGATTTT CCCAGCCG TTTAATAAGG chr2L:10263624-10263744 47 1.44e-04 AGGGACTTCC CGCTGCTC TAGTGACTTG chr3L:11528456-11528576 71 1.49e-04 CGAAAAAAGT GCGTGGCC GTGCTCATGG chr3R:4400429-4400549 17 1.65e-04 TTAAATGTAA CGCTGCTG CTGTTGCGGC chr3R:30865540-30865660 14 1.76e-04 GGAGTACAGT GGCCGCTC GAGCATGACG chr3R:20311024-20311144 85 1.84e-04 AAAATTGTAG CCGCGGCG AGTTAATACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCTGSSS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:6414814-6414934 1.1e-06 18_[+1]_94 chr3R:9551054-9551174 1.1e-06 31_[+1]_81 chr3R:9877795-9877915 3.7e-06 43_[+1]_69 chr2L:1656810-1656930 1.3e-05 110_[+1]_2 chrX:13277654-13277774 1.3e-05 92_[+1]_20 chr3L:10818330-10818450 2e-05 37_[+1]_75 chr3L:16129026-16129146 2e-05 14_[+1]_98 chr2L:10543244-10543364 2.3e-05 33_[+1]_79 chr2R:6811439-6811559 2.9e-05 61_[+1]_51 chr3R:15094179-15094299 3.6e-05 8_[+1]_104 chr2R:21194481-21194601 3.6e-05 82_[+1]_30 chr3R:31216401-31216521 3.6e-05 90_[+1]_22 chr3L:16714209-16714329 4.3e-05 74_[+1]_38 chr3L:4286911-4287031 4.3e-05 111_[+1]_1 chr3L:14760720-14760840 4.3e-05 49_[+1]_63 chr3R:18168432-18168552 5e-05 69_[+1]_43 chr3L:753896-754016 5e-05 56_[+1]_56 chr3R:19875568-19875688 5.6e-05 88_[+1]_24 chr3L:19181139-19181259 5.6e-05 28_[+1]_84 chr3R:18244197-18244317 5.6e-05 25_[+1]_87 chr3R:21855419-21855539 5.6e-05 103_[+1]_9 chr3R:18311078-18311198 6.6e-05 20_[+1]_92 chrX:19866864-19866984 8.2e-05 30_[+1]_82 chr3L:8853134-8853254 8.2e-05 17_[+1]_95 chrX:12547372-12547492 8.2e-05 87_[+1]_25 chr2L:10232081-10232201 8.9e-05 112_[+1] chr3L:19087866-19087986 0.00011 34_[+1]_78 chr3R:15677834-15677954 0.00012 26_[+1]_86 chr2R:5350605-5350725 0.00013 51_[+1]_61 chr2L:10263624-10263744 0.00014 46_[+1]_66 chr3L:11528456-11528576 0.00015 70_[+1]_42 chr3R:4400429-4400549 0.00016 16_[+1]_96 chr3R:30865540-30865660 0.00018 13_[+1]_99 chr3R:20311024-20311144 0.00018 84_[+1]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCTGSSS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGCTGSSS width=8 seqs=34 chr3R:6414814-6414934 ( 19) CGCTGCGC 1 chr3R:9551054-9551174 ( 32) CGCTGCGC 1 chr3R:9877795-9877915 ( 44) CGCTGCGG 1 chr2L:1656810-1656930 ( 111) CGCAGCGC 1 chrX:13277654-13277774 ( 93) GGCTGGGC 1 chr3L:10818330-10818450 ( 38) CGCTGGGG 1 chr3L:16129026-16129146 ( 15) CGCTGGGG 1 chr2L:10543244-10543364 ( 34) CGGTGCGG 1 chr2R:6811439-6811559 ( 62) GGCCGGGC 1 chr3R:15094179-15094299 ( 9) GGGTGCGG 1 chr2R:21194481-21194601 ( 83) CCCTGGGC 1 chr3R:31216401-31216521 ( 91) GGGCGCGC 1 chr3L:16714209-16714329 ( 75) GGCAGCGG 1 chr3L:4286911-4287031 ( 112) CGCAGCCC 1 chr3L:14760720-14760840 ( 50) CGCCGGGG 1 chr3R:18168432-18168552 ( 70) GGGTGCCC 1 chr3L:753896-754016 ( 57) GCCTGCCC 1 chr3R:19875568-19875688 ( 89) GCGTGCGC 1 chr3L:19181139-19181259 ( 29) GGCAGGGC 1 chr3R:18244197-18244317 ( 26) GCGTGCGC 1 chr3R:21855419-21855539 ( 104) CGCTGGCG 1 chr3R:18311078-18311198 ( 21) GCCAGCGC 1 chrX:19866864-19866984 ( 31) GCCCGCCC 1 chr3L:8853134-8853254 ( 18) CGGAGCGG 1 chrX:12547372-12547492 ( 88) GGGTGCCG 1 chr2L:10232081-10232201 ( 113) CGCAGGCC 1 chr3L:19087866-19087986 ( 35) CCCTGGCG 1 chr3R:15677834-15677954 ( 27) GCGAGCGC 1 chr2R:5350605-5350725 ( 52) CCCAGCCG 1 chr2L:10263624-10263744 ( 47) CGCTGCTC 1 chr3L:11528456-11528576 ( 71) GCGTGGCC 1 chr3R:4400429-4400549 ( 17) CGCTGCTG 1 chr3R:30865540-30865660 ( 14) GGCCGCTC 1 chr3R:20311024-20311144 ( 85) CCGCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCTGSSS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 1.3e+000 -1173 169 152 -1173 -1173 98 205 -1173 -1173 205 98 -1173 -35 11 -1173 74 -1173 -1173 261 -1173 -1173 198 111 -1173 -1173 98 184 -192 -1173 185 133 -1173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCTGSSS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 1.3e+000 0.000000 0.529412 0.470588 0.000000 0.000000 0.323529 0.676471 0.000000 0.000000 0.676471 0.323529 0.000000 0.264706 0.176471 0.000000 0.558824 0.000000 0.000000 1.000000 0.000000 0.000000 0.647059 0.352941 0.000000 0.000000 0.323529 0.588235 0.088235 0.000000 0.588235 0.411765 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCTGSSS MEME-1 regular expression -------------------------------------------------------------------------------- [CG][GC][CG][TA]G[CG][GC][CG] -------------------------------------------------------------------------------- Time 9.94 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGYGTGY MEME-2 width = 8 sites = 12 llr = 126 E-value = 5.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGYGTGY MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::1:::: pos.-specific C :::4:::5 probability G a:a:a:a1 matrix T :a:5:a:4 bits 2.6 * * * * 2.4 * * * * 2.1 * * * * 1.8 * * * * Relative 1.6 *** *** Entropy 1.3 *** *** (15.1 bits) 1.0 *** *** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGTGTGC consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGYGTGY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:9343045-9343165 97 2.18e-06 GTATATACAT GTGCGTGC ATTTGTGTGT chr2R:11198646-11198766 108 2.18e-06 gagtgagtaa gtgcgtgc gagtg chr2L:10423143-10423263 8 2.18e-06 AAATGTG GTGCGTGC ATATGCATAC chr2L:7790944-7791064 69 6.64e-06 AAAAGATTGT GTGTGTGC TTTGCATTGA chr2R:16829328-16829448 12 6.64e-06 gtgtgtgtgt gtgtgtgC CGATCGGAAG chr3R:11750615-11750735 59 1.11e-05 CGGGCTTCGA GTGCGTGT ACAAAAGGAT chr2L:18625509-18625629 33 2.02e-05 AAAGAGAGTC GTGTGTGT TTTATCGTTG chr2L:1653378-1653498 75 2.02e-05 CAGATAAAAC GTGTGTGT TAGTTTGCAT chr3L:18757522-18757642 13 2.02e-05 CCGCTCTCTT GTGTGTGT TGGGAAAGTT chr3R:21618904-21619024 59 2.02e-05 GCGCGCgtgt gtgtgtgt atgtgtgtgt chr2L:10422944-10423064 84 2.24e-05 AAACATAACT GTGCGTGG TCCGTAGGTT chr3R:15677834-15677954 80 3.13e-05 GAATCGCTTT GTGAGTGC TTCCGCATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGYGTGY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:9343045-9343165 2.2e-06 96_[+2]_16 chr2R:11198646-11198766 2.2e-06 107_[+2]_5 chr2L:10423143-10423263 2.2e-06 7_[+2]_105 chr2L:7790944-7791064 6.6e-06 68_[+2]_44 chr2R:16829328-16829448 6.6e-06 11_[+2]_101 chr3R:11750615-11750735 1.1e-05 58_[+2]_54 chr2L:18625509-18625629 2e-05 32_[+2]_80 chr2L:1653378-1653498 2e-05 74_[+2]_38 chr3L:18757522-18757642 2e-05 12_[+2]_100 chr3R:21618904-21619024 2e-05 58_[+2]_54 chr2L:10422944-10423064 2.2e-05 83_[+2]_29 chr3R:15677834-15677954 3.1e-05 79_[+2]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGYGTGY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGYGTGY width=8 seqs=12 chr3R:9343045-9343165 ( 97) GTGCGTGC 1 chr2R:11198646-11198766 ( 108) GTGCGTGC 1 chr2L:10423143-10423263 ( 8) GTGCGTGC 1 chr2L:7790944-7791064 ( 69) GTGTGTGC 1 chr2R:16829328-16829448 ( 12) GTGTGTGC 1 chr3R:11750615-11750735 ( 59) GTGCGTGT 1 chr2L:18625509-18625629 ( 33) GTGTGTGT 1 chr2L:1653378-1653498 ( 75) GTGTGTGT 1 chr3L:18757522-18757642 ( 13) GTGTGTGT 1 chr3R:21618904-21619024 ( 59) GTGTGTGT 1 chr2L:10422944-10423064 ( 84) GTGCGTGG 1 chr3R:15677834-15677954 ( 80) GTGAGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGYGTGY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3003 E= 5.1e+003 -1023 -1023 261 -1023 -1023 -1023 -1023 158 -1023 -1023 261 -1023 -201 135 -1023 58 -1023 -1023 261 -1023 -1023 -1023 -1023 158 -1023 -1023 261 -1023 -1023 161 -97 31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGYGTGY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 5.1e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.083333 0.416667 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.083333 0.416667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGYGTGY MEME-2 regular expression -------------------------------------------------------------------------------- GTG[TC]GTG[CT] -------------------------------------------------------------------------------- Time 16.23 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGAGCA MEME-3 width = 8 sites = 4 llr = 50 E-value = 8.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGAGCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::a::a pos.-specific C :8a:::a: probability G a3:a:a:: matrix T :::::::: bits 2.6 * ** ** 2.4 * ** ** 2.1 * ** ** 1.8 **** ** Relative 1.6 ******** Entropy 1.3 ******** (18.0 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCGAGCA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGAGCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:10818330-10818450 2 2.21e-06 T GCCGAGCA TTTATTAGCA chr2L:4032349-4032469 29 2.21e-06 ACCCCACAAA GCCGAGCA ATTTCTAATC chr3R:21612262-21612382 60 2.21e-06 ACAGGCAATT GCCGAGCA CAAGTTATTC chrX:1879997-1880117 110 4.42e-06 GCAATCATGA GGCGAGCA TAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGAGCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:10818330-10818450 2.2e-06 1_[+3]_111 chr2L:4032349-4032469 2.2e-06 28_[+3]_84 chr3R:21612262-21612382 2.2e-06 59_[+3]_53 chrX:1879997-1880117 4.4e-06 109_[+3]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGAGCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGAGCA width=8 seqs=4 chr3L:10818330-10818450 ( 2) GCCGAGCA 1 chr2L:4032349-4032469 ( 29) GCCGAGCA 1 chr3R:21612262-21612382 ( 60) GCCGAGCA 1 chrX:1879997-1880117 ( 110) GGCGAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGAGCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9376 E= 8.3e+004 -865 -865 261 -865 -865 219 61 -865 -865 261 -865 -865 -865 -865 261 -865 157 -865 -865 -865 -865 -865 261 -865 -865 261 -865 -865 157 -865 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGAGCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 8.3e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGAGCA MEME-3 regular expression -------------------------------------------------------------------------------- G[CG]CGAGCA -------------------------------------------------------------------------------- Time 22.46 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCCYCGT MEME-4 width = 8 sites = 3 llr = 39 E-value = 2.6e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCCYCGT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::aa7a:: probability G aa::::a: matrix T ::::3::a bits 2.6 **** ** 2.4 **** ** 2.1 **** ** 1.8 **** ** Relative 1.6 **** *** Entropy 1.3 ******** (18.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCCCCGT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCYCGT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6853441-6853561 24 1.07e-06 CTCTTGTCGA GGCCCCGT TTCGTGAACA chr2L:10263624-10263744 25 1.07e-06 ATAGTTTAAC GGCCCCGT AAAAAGGGAC chr3R:4400429-4400549 32 3.25e-06 CTGCTGTTGC GGCCTCGT GTGAACAGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCYCGT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6853441-6853561 1.1e-06 23_[+4]_89 chr2L:10263624-10263744 1.1e-06 24_[+4]_88 chr3R:4400429-4400549 3.3e-06 31_[+4]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCYCGT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCCYCGT width=8 seqs=3 chrX:6853441-6853561 ( 24) GGCCCCGT 1 chr2L:10263624-10263744 ( 25) GGCCCCGT 1 chr3R:4400429-4400549 ( 32) GGCCTCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCYCGT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 2.6e+005 -823 -823 261 -823 -823 -823 261 -823 -823 261 -823 -823 -823 261 -823 -823 -823 202 -823 -1 -823 261 -823 -823 -823 -823 261 -823 -823 -823 -823 157 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCYCGT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.6e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCYCGT MEME-4 regular expression -------------------------------------------------------------------------------- GGCC[CT]CGT -------------------------------------------------------------------------------- Time 28.71 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGCAGCG MEME-5 width = 8 sites = 6 llr = 69 E-value = 1.7e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGCAGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::7::: pos.-specific C :::a3:a2 probability G ::a::a:8 matrix T aa:::::: bits 2.6 ** ** 2.4 ** ** 2.1 ** *** 1.8 ** *** Relative 1.6 **** *** Entropy 1.3 **** *** (16.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTGCAGCG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCAGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:15677834-15677954 97 2.18e-06 CTTCCGCATT TTGCCGCG AACTGTGCCA chr2L:22121633-22121753 4 6.67e-06 CCG TTGCAGCG AAAACTTATT chr3L:10818330-10818450 102 6.67e-06 AACTTTATCA TTGCAGCG AGGTAACAGC chr3L:19045855-19045975 77 6.67e-06 ACATATTTGA TTGCAGCG AATGCCACGC chr2R:5701582-5701702 33 6.67e-06 GTGAAAAAGA TTGCAGCG CTATCGTCTG chr2R:5307143-5307263 76 8.85e-06 AATATGGTTT TTGCCGCC GTAAGAATAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCAGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:15677834-15677954 2.2e-06 96_[+5]_16 chr2L:22121633-22121753 6.7e-06 3_[+5]_109 chr3L:10818330-10818450 6.7e-06 101_[+5]_11 chr3L:19045855-19045975 6.7e-06 76_[+5]_36 chr2R:5701582-5701702 6.7e-06 32_[+5]_80 chr2R:5307143-5307263 8.9e-06 75_[+5]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCAGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGCAGCG width=8 seqs=6 chr3R:15677834-15677954 ( 97) TTGCCGCG 1 chr2L:22121633-22121753 ( 4) TTGCAGCG 1 chr3L:10818330-10818450 ( 102) TTGCAGCG 1 chr3L:19045855-19045975 ( 77) TTGCAGCG 1 chr2R:5701582-5701702 ( 33) TTGCAGCG 1 chr2R:5307143-5307263 ( 76) TTGCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCAGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.6482 E= 1.7e+005 -923 -923 -923 157 -923 -923 -923 157 -923 -923 261 -923 -923 261 -923 -923 98 103 -923 -923 -923 -923 261 -923 -923 261 -923 -923 -923 3 235 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCAGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.7e+005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.833333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCAGCG MEME-5 regular expression -------------------------------------------------------------------------------- TTGC[AC]GCG -------------------------------------------------------------------------------- Time 34.92 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21373938-21374058 1.66e-01 120 chr3R:16206719-16206839 8.40e-01 120 chrX:17658345-17658465 2.44e-02 120 chr2L:10239034-10239154 9.49e-01 120 chr3R:13660844-13660964 8.86e-03 120 chr3R:14278349-14278469 1.00e+00 120 chrX:5083322-5083442 2.29e-01 120 chr2R:5701582-5701702 6.23e-03 32_[+5(6.67e-06)]_80 chr2L:10239235-10239355 8.43e-01 120 chr3R:21618904-21619024 1.57e-03 54_[+2(2.02e-05)]_6_[+2(2.02e-05)]_\ 44 chr3R:6816729-6816849 8.56e-01 120 chr2L:10227124-10227244 3.58e-01 120 chr4:1123710-1123830 4.96e-01 120 chr3R:11750615-11750735 3.78e-03 58_[+2(1.11e-05)]_54 chr3R:32052257-32052377 9.89e-01 120 chr2R:10437617-10437737 2.83e-01 120 chr3R:4400225-4400345 9.40e-01 120 chr2R:14215206-14215326 1.80e-01 120 chr3R:25491250-25491370 9.25e-01 120 chrX:18657443-18657563 9.82e-01 120 chr3R:15290110-15290230 9.46e-02 120 chr3R:14279766-14279886 7.06e-01 120 chr3L:11253229-11253349 2.61e-01 100_[+5(7.38e-05)]_12 chr2R:16096756-16096876 1.24e-02 120 chr3R:21855419-21855539 4.75e-04 103_[+1(5.60e-05)]_9 chr2R:4471304-4471424 9.09e-01 120 chr2R:12166043-12166163 6.77e-01 120 chr3L:16129026-16129146 3.38e-03 14_[+1(2.03e-05)]_98 chr2L:10263624-10263744 2.02e-04 24_[+4(1.07e-06)]_88 chr3L:13115031-13115151 6.54e-01 120 chr2R:13940469-13940589 8.53e-01 120 chr2L:10422944-10423064 2.71e-02 83_[+2(2.24e-05)]_29 chr2R:22508193-22508313 7.35e-01 120 chr3L:753896-754016 4.56e-03 56_[+1(5.01e-05)]_56 chr2R:24062754-24062874 1.00e+00 120 chr2R:9387084-9387204 5.45e-01 120 chr3L:11556780-11556900 8.79e-01 120 chr3L:4101898-4102018 4.32e-01 120 chr2R:24060051-24060171 8.04e-01 120 chr2L:7790726-7790846 8.92e-01 120 chr3R:21612262-21612382 1.55e-04 59_[+3(2.21e-06)]_53 chr3R:20829536-20829656 9.74e-01 120 chr3L:9125968-9126088 1.44e-02 120 chr4:505993-506113 4.24e-01 120 chr3L:18757522-18757642 1.53e-03 12_[+2(2.02e-05)]_100 chr3R:18311078-18311198 4.57e-02 20_[+1(6.55e-05)]_92 chr3R:4232528-4232648 9.00e-01 120 chr3L:5181584-5181704 2.57e-01 120 chr2R:8152696-8152816 9.93e-01 120 chr2R:13940669-13940789 2.33e-01 120 chrX:13754221-13754341 3.23e-01 120 chr2R:16829328-16829448 6.59e-04 1_[+2(2.02e-05)]_2_[+2(6.64e-06)]_\ 101 chr3R:4400429-4400549 1.39e-05 31_[+4(3.25e-06)]_81 chr2R:22684841-22684961 2.28e-03 60_[+3(1.31e-05)]_52 chr2R:18374484-18374604 4.24e-01 120 chr2L:10423143-10423263 1.59e-03 7_[+2(2.18e-06)]_105 chrX:12724749-12724869 9.95e-01 120 chr2L:15272345-15272465 9.97e-01 120 chr2L:4032349-4032469 1.11e-02 28_[+3(2.21e-06)]_84 chr4:663484-663604 7.63e-01 120 chrX:15593971-15594091 1.00e+00 120 chr2L:10314703-10314823 5.37e-01 120 chr3R:31216401-31216521 2.66e-04 45_[+1(8.15e-05)]_37_[+1(3.62e-05)]_\ 22 chr2R:21194481-21194601 3.21e-02 82_[+1(3.62e-05)]_30 chr3L:11409967-11410087 5.69e-01 120 chr3R:24580660-24580780 9.41e-01 120 chr3L:13046602-13046722 8.56e-01 120 chr2R:9554672-9554792 2.69e-02 120 chr2L:10314498-10314618 8.46e-01 120 chr2R:10047889-10048009 4.69e-01 120 chr3L:3409402-3409522 2.23e-01 120 chr2R:1264255-1264375 2.02e-01 120 chrX:15890407-15890527 8.30e-01 120 chr3R:24580862-24580982 7.37e-02 104_[+3(7.85e-05)]_8 chr2L:5044937-5045057 9.95e-01 120 chr2R:19232002-19232122 9.12e-01 120 chr2L:22239732-22239852 6.06e-01 120 chr2R:5363214-5363334 9.95e-01 120 chrX:4956071-4956191 3.55e-01 120 chr3R:4232754-4232874 6.75e-01 120 chr3L:19231336-19231456 6.22e-01 120 chrX:141705-141825 2.86e-01 120 chr2R:21716752-21716872 7.61e-01 120 chr3L:19045855-19045975 7.54e-03 76_[+5(6.67e-06)]_36 chr3R:20950146-20950266 9.93e-01 120 chr2R:18349575-18349695 7.83e-02 120 chr3R:25167477-25167597 7.17e-01 120 chr2L:871262-871382 3.07e-01 120 chr3L:17447860-17447980 2.97e-01 120 chr3L:14970180-14970300 7.80e-01 120 chr3R:18244197-18244317 5.08e-03 25_[+1(5.60e-05)]_87 chr3R:20950381-20950501 4.40e-01 120 chr2L:19036082-19036202 1.00e+00 120 chr3L:14760720-14760840 1.08e-03 49_[+1(4.26e-05)]_63 chr2R:5251099-5251219 7.08e-01 120 chr3R:31607950-31608070 8.38e-01 120 chr2L:10232081-10232201 3.81e-02 112_[+1(8.90e-05)] chr2R:5350605-5350725 4.76e-02 120 chr3R:13804183-13804303 5.13e-01 120 chr3L:14992646-14992766 2.10e-01 120 chr3L:23714824-23714944 7.77e-01 120 chr2R:11633893-11634013 1.00e+00 120 chr4:482423-482543 7.93e-01 120 chr3R:6000342-6000462 3.43e-01 120 chr3L:14193887-14194007 9.44e-01 120 chr2L:16492370-16492490 6.89e-01 120 chrX:13277654-13277774 7.54e-04 92_[+1(1.33e-05)]_20 chrX:6853441-6853561 8.69e-06 23_[+4(1.07e-06)]_79_[+5(2.87e-05)]_\ 2 chr2L:5042261-5042381 1.00e+00 120 chr2L:14494118-14494238 4.07e-01 120 chr3R:14026841-14026961 8.57e-02 120 chr4:67539-67659 2.41e-01 120 chr3R:15094179-15094299 1.34e-03 8_[+1(3.62e-05)]_104 chr2R:8859956-8860076 4.92e-01 120 chr2R:6811439-6811559 6.84e-05 61_[+1(2.88e-05)]_51 chr2L:7790944-7791064 7.73e-03 68_[+2(6.64e-06)]_44 chr3L:17448088-17448208 1.12e-02 120 chr4:663283-663403 7.20e-01 120 chr2R:15155094-15155214 9.98e-01 120 chr2L:1653378-1653498 8.86e-02 74_[+2(2.02e-05)]_38 chr2R:13015150-13015270 1.00e+00 120 chr3L:6797454-6797574 9.69e-02 120 chr3L:4000752-4000872 4.93e-02 64_[+5(5.54e-05)]_48 chr4:1181865-1181985 9.52e-01 120 chr3R:29868380-29868500 4.99e-02 120 chr2L:1619348-1619468 2.83e-01 120 chr3L:23095780-23095900 4.37e-01 120 chr3L:3413723-3413843 1.12e-01 120 chr3R:10265227-10265347 1.39e-01 120 chr3L:19234218-19234338 8.65e-01 120 chr3L:19181139-19181259 4.13e-03 28_[+1(5.60e-05)]_84 chr3L:18273237-18273357 9.06e-01 120 chr3L:19088093-19088213 9.98e-01 120 chrX:12547372-12547492 6.35e-03 87_[+1(8.15e-05)]_25 chr3L:15034410-15034530 9.63e-01 120 chrX:9082692-9082812 2.33e-03 56_[+3(1.31e-05)]_56 chr3L:17995102-17995222 6.27e-01 120 chr2L:14234460-14234580 9.99e-01 120 chrX:17656927-17657047 9.61e-01 120 chr3R:23212389-23212509 6.38e-01 120 chr3L:4286911-4287031 1.91e-02 111_[+1(4.26e-05)]_1 chr2R:13614102-13614222 6.78e-01 120 chr3R:14351501-14351621 1.15e-01 120 chr2L:20808312-20808432 8.91e-01 120 chrX:12724960-12725080 9.97e-01 120 chr3L:8853134-8853254 9.53e-05 17_[+1(8.15e-05)]_13_[+4(4.13e-05)]_\ 74 chr2R:4788660-4788780 9.71e-01 120 chr3L:11246821-11246941 2.96e-01 120 chrX:10763040-10763160 9.18e-01 120 chr2L:9521895-9522015 3.52e-01 120 chr3L:20188340-20188460 1.62e-02 120 chr3R:16214047-16214167 9.89e-02 120 chr2R:7490062-7490182 5.24e-01 120 chr2L:1656810-1656930 4.40e-05 110_[+1(1.33e-05)]_2 chr3L:10661249-10661369 1.00e+00 120 chr3L:10818330-10818450 2.46e-06 1_[+3(2.21e-06)]_28_[+1(2.03e-05)]_\ 56_[+5(6.67e-06)]_11 chr2L:10226862-10226982 8.66e-01 120 chr2L:10543244-10543364 8.05e-03 33_[+1(2.34e-05)]_79 chrX:5904598-5904718 2.43e-01 120 chr3R:28580666-28580786 1.13e-01 120 chr3L:14328473-14328593 9.83e-01 120 chr2R:11198646-11198766 1.31e-02 107_[+2(2.18e-06)]_5 chr3R:9343045-9343165 7.18e-04 96_[+2(2.18e-06)]_16 chr3R:6406156-6406276 9.12e-01 120 chr2R:5293866-5293986 5.31e-01 120 chr3R:8577755-8577875 9.85e-01 120 chr3R:24233847-24233967 1.26e-01 120 chr3R:14711575-14711695 6.10e-01 120 chr3R:27925242-27925362 2.44e-01 120 chr2L:10221102-10221222 6.76e-01 120 chrX:17581941-17582061 9.73e-01 120 chr3L:19087866-19087986 5.24e-04 120 chr3L:16714209-16714329 2.65e-04 74_[+1(4.26e-05)]_38 chr2L:6967827-6967947 9.96e-01 120 chrX:17124991-17125111 3.58e-01 120 chr2L:19463552-19463672 7.14e-01 120 chr2R:12925530-12925650 4.77e-02 120 chr3R:25968592-25968712 9.96e-01 120 chr2L:7827539-7827659 8.23e-02 120 chr2R:5122532-5122652 9.92e-01 120 chr2R:5307143-5307263 2.47e-03 75_[+5(8.85e-06)]_37 chr3L:4355427-4355547 1.00e+00 120 chr3L:3544092-3544212 6.75e-03 78_[+3(7.85e-05)]_34 chr2L:8087335-8087455 9.38e-01 120 chrX:9554173-9554293 9.27e-01 120 chr2R:16096966-16097086 6.52e-01 120 chr2R:14136820-14136940 6.12e-01 120 chr3L:21859851-21859971 9.87e-01 120 chr3R:15677834-15677954 1.43e-06 21_[+5(2.00e-05)]_50_[+2(3.13e-05)]_\ 9_[+5(2.18e-06)]_16 chr3L:23125743-23125863 4.77e-01 120 chr3L:2845268-2845388 6.29e-01 120 chr2L:19019241-19019361 1.37e-01 120 chr3R:13016531-13016651 3.76e-01 120 chr3L:15275549-15275669 9.19e-01 120 chrX:19866864-19866984 2.69e-02 30_[+1(8.15e-05)]_82 chr3R:20311024-20311144 3.01e-03 81_[+5(2.87e-05)]_31 chr2R:15322206-15322326 9.40e-01 120 chr3R:15128910-15129030 9.99e-01 120 chr2R:18435094-18435214 5.09e-01 120 chr2L:9996604-9996724 9.87e-01 120 chr3R:15139523-15139643 7.04e-01 120 chr3R:8349555-8349675 9.23e-01 120 chr3R:30865540-30865660 1.12e-02 120 chr4:670913-671033 1.95e-01 120 chr3R:9740787-9740907 3.95e-02 120 chr3R:14386189-14386309 8.54e-01 120 chrX:9135242-9135362 9.99e-01 120 chrX:14247512-14247632 4.99e-01 120 chr3R:9877795-9877915 5.08e-04 43_[+1(3.73e-06)]_69 chrX:5966144-5966264 9.79e-01 120 chr3R:25184255-25184375 9.12e-01 120 chr3L:16149962-16150082 4.57e-01 120 chr3R:16215143-16215263 3.28e-01 120 chr2L:18965858-18965978 2.22e-01 120 chr2R:12951588-12951708 6.77e-01 120 chr2L:14691035-14691155 6.81e-01 120 chrX:15760863-15760983 9.95e-01 120 chr3L:16038053-16038173 6.12e-01 120 chr3L:20186507-20186627 2.13e-01 120 chrX:3704264-3704384 4.34e-01 120 chr2R:10806833-10806953 7.16e-01 120 chr3R:3789732-3789852 4.29e-01 120 chr3R:9551054-9551174 2.39e-03 31_[+1(1.07e-06)]_81 chr3L:18030049-18030169 9.98e-01 120 chr3L:15034610-15034730 9.76e-01 120 chr2R:9660205-9660325 5.87e-01 120 chr4:1197065-1197185 5.67e-01 120 chrX:1879997-1880117 5.56e-04 109_[+3(4.42e-06)]_3 chr2R:9711921-9712041 1.00e+00 120 chr2L:22121633-22121753 1.05e-02 3_[+5(6.67e-06)]_109 chr3R:10139949-10140069 8.95e-01 120 chr3R:18168432-18168552 3.13e-03 69_[+1(5.01e-05)]_43 chr3R:8362635-8362755 1.00e+00 120 chr3R:19875568-19875688 1.14e-04 86_[+2(2.18e-06)]_26 chr3R:6414814-6414934 1.96e-04 18_[+1(1.07e-06)]_2_[+5(5.54e-05)]_\ 84 chr2L:14497868-14497988 7.53e-02 120 chr2L:18625509-18625629 7.29e-02 32_[+2(2.02e-05)]_80 chr3L:381110-381230 7.28e-01 120 chrX:11816622-11816742 1.19e-01 120 chr3L:11528456-11528576 3.14e-05 68_[+2(2.24e-05)]_44 chr2R:5701900-5702020 7.70e-01 120 chr3R:15129111-15129231 5.84e-01 120 chr2R:21706414-21706534 5.50e-01 120 chr2R:1345197-1345317 1.30e-03 120 chr2R:11176444-11176564 9.57e-01 120 chr2L:6795091-6795211 2.97e-01 120 chr3R:19165218-19165338 9.99e-01 120 chr3L:6885764-6885884 1.00e+00 120 chr3R:4732333-4732453 5.31e-01 120 chr3R:21188251-21188371 8.12e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************