******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/SuH.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:2088401-2088521 1.0000 120 chr3L:27911776-27911896 1.0000 120 chr2L:21401194-21401314 1.0000 120 chr3R:23312029-23312149 1.0000 120 chr2L:19047175-19047295 1.0000 120 chr2R:4270880-4271000 1.0000 120 chrX:12684796-12684916 1.0000 120 chr2L:538931-539051 1.0000 120 chr3R:23058171-23058291 1.0000 120 chr3R:8090183-8090303 1.0000 120 chr3L:873323-873443 1.0000 120 chr3R:21099557-21099677 1.0000 120 chr3L:27089918-27090038 1.0000 120 chr2R:20269706-20269826 1.0000 120 chrX:18290819-18290939 1.0000 120 chr2R:10422573-10422693 1.0000 120 chr2R:20276700-20276820 1.0000 120 chrX:3081695-3081815 1.0000 120 chrX:2255157-2255277 1.0000 120 chr3L:19886588-19886708 1.0000 120 chr3R:27262705-27262825 1.0000 120 chr3L:21225788-21225908 1.0000 120 chr3R:23266220-23266340 1.0000 120 chr2R:12692998-12693118 1.0000 120 chr3R:11605650-11605770 1.0000 120 chr2L:1185328-1185448 1.0000 120 chr3R:21574535-21574655 1.0000 120 chr4:525211-525331 1.0000 120 chr2R:20329903-20330023 1.0000 120 chr2R:8565941-8566061 1.0000 120 chrX:8870135-8870255 1.0000 120 chrX:19712849-19712969 1.0000 120 chr3L:22368638-22368758 1.0000 120 chr2L:12015535-12015655 1.0000 120 chr3L:3459673-3459793 1.0000 120 chrX:12679052-12679172 1.0000 120 chr3R:21096772-21096892 1.0000 120 chr2R:17414691-17414811 1.0000 120 chr2L:13331216-13331336 1.0000 120 chrX:4204080-4204200 1.0000 120 chr2L:831297-831417 1.0000 120 chrX:16913253-16913373 1.0000 120 chrX:19164261-19164381 1.0000 120 chr3R:23255717-23255837 1.0000 120 chr3L:832044-832164 1.0000 120 chr2R:7664121-7664241 1.0000 120 chr3R:26229757-26229877 1.0000 120 chr2L:12504942-12505062 1.0000 120 chr3R:23260381-23260501 1.0000 120 chr2R:19325504-19325624 1.0000 120 chr3R:12372052-12372172 1.0000 120 chr3L:3439897-3440017 1.0000 120 chr2R:12314050-12314170 1.0000 120 chr3R:23057219-23057339 1.0000 120 chr2L:545231-545351 1.0000 120 chr2R:4271828-4271948 1.0000 120 chr3L:6943459-6943579 1.0000 120 chrX:1468425-1468545 1.0000 120 chr3R:8090469-8090589 1.0000 120 chrX:5710785-5710905 1.0000 120 chr3R:25292306-25292426 1.0000 120 chr2R:13219260-13219380 1.0000 120 chr2L:19005533-19005653 1.0000 120 chr3R:23060531-23060651 1.0000 120 chr3R:23239167-23239287 1.0000 120 chr3R:11984285-11984405 1.0000 120 chr2L:21103271-21103391 1.0000 120 chr2L:20312096-20312216 1.0000 120 chr2L:21141725-21141845 1.0000 120 chr3R:18450405-18450525 1.0000 120 chr2R:12634376-12634496 1.0000 120 chr2L:1667526-1667646 1.0000 120 chr3R:9357380-9357500 1.0000 120 chr2L:12483432-12483552 1.0000 120 chr3R:23255968-23256088 1.0000 120 chr3L:2571447-2571567 1.0000 120 chr2R:10602977-10603097 1.0000 120 chr2R:21175208-21175328 1.0000 120 chrX:2341714-2341834 1.0000 120 chr2L:19127829-19127949 1.0000 120 chr3R:8094058-8094178 1.0000 120 chr2R:21216411-21216531 1.0000 120 chr2L:527408-527528 1.0000 120 chrX:16835813-16835933 1.0000 120 chr3L:19034276-19034396 1.0000 120 chrX:21067659-21067779 1.0000 120 chr2R:20271851-20271971 1.0000 120 chrX:15633505-15633625 1.0000 120 chr2R:10851903-10852023 1.0000 120 chr3R:22626626-22626746 1.0000 120 chr2R:6651971-6652091 1.0000 120 chrX:15483313-15483433 1.0000 120 chr3R:23257716-23257836 1.0000 120 chr3R:8346080-8346200 1.0000 120 chr3R:24219788-24219908 1.0000 120 chr3L:445907-446027 1.0000 120 chrX:19665335-19665455 1.0000 120 chr2R:5773114-5773234 1.0000 120 chr2R:20273152-20273272 1.0000 120 chr3R:15994330-15994450 1.0000 120 chr3L:20355343-20355463 1.0000 120 chr3R:23327836-23327956 1.0000 120 chr3R:9866100-9866220 1.0000 120 chrX:10534335-10534455 1.0000 120 chrX:18864989-18865109 1.0000 120 chrX:8894036-8894156 1.0000 120 chr3R:31572776-31572896 1.0000 120 chr3L:17668061-17668181 1.0000 120 chr3R:23330689-23330809 1.0000 120 chrX:17710913-17711033 1.0000 120 chr3R:23252221-23252341 1.0000 120 chr3R:23324853-23324973 1.0000 120 chr2L:22145654-22145774 1.0000 120 chr2R:12654181-12654301 1.0000 120 chr3R:12368240-12368360 1.0000 120 chr3L:3151116-3151236 1.0000 120 chr3R:22698510-22698630 1.0000 120 chr3R:23326893-23327013 1.0000 120 chr3L:9401246-9401366 1.0000 120 chr2R:12686722-12686842 1.0000 120 chr3R:23312893-23313013 1.0000 120 chr2L:13095827-13095947 1.0000 120 chrX:5694865-5694985 1.0000 120 chr3R:8261844-8261964 1.0000 120 chrX:8870338-8870458 1.0000 120 chr3L:768049-768169 1.0000 120 chrX:2298785-2298905 1.0000 120 chr3L:3456041-3456161 1.0000 120 chrX:17651405-17651525 1.0000 120 chr2L:517615-517735 1.0000 120 chr3L:1577874-1577994 1.0000 120 chr2R:12518574-12518694 1.0000 120 chr2L:12974999-12975119 1.0000 120 chr2R:21200916-21201036 1.0000 120 chr3L:22910393-22910513 1.0000 120 chr3L:16807690-16807810 1.0000 120 chrX:12546399-12546519 1.0000 120 chr3R:19642188-19642308 1.0000 120 chr3R:23052000-23052120 1.0000 120 chr3L:881040-881160 1.0000 120 chr2R:17794247-17794367 1.0000 120 chr3R:4307692-4307812 1.0000 120 chr3L:6263853-6263973 1.0000 120 chrX:499273-499393 1.0000 120 chr3L:767824-767944 1.0000 120 chrX:3555217-3555337 1.0000 120 chr2L:16451184-16451304 1.0000 120 chr3L:1196201-1196321 1.0000 120 chr2L:19756515-19756635 1.0000 120 chrX:11622706-11622826 1.0000 120 chr2L:16731786-16731906 1.0000 120 chr2L:468213-468333 1.0000 120 chr3R:18447515-18447635 1.0000 120 chr2R:12957785-12957905 1.0000 120 chr3L:25230065-25230185 1.0000 120 chr2R:12743098-12743218 1.0000 120 chr3L:12804414-12804534 1.0000 120 chr4:656352-656472 1.0000 120 chr3L:14221258-14221378 1.0000 120 chrX:19498920-19499040 1.0000 120 chr2R:13344910-13345030 1.0000 120 chr3R:6407670-6407790 1.0000 120 chr3R:11980277-11980397 1.0000 120 chr2L:468005-468125 1.0000 120 chrX:3143366-3143486 1.0000 120 chr2L:506575-506695 1.0000 120 chr2R:19141956-19142076 1.0000 120 chr2R:22242561-22242681 1.0000 120 chrX:11881887-11882007 1.0000 120 chrX:7967191-7967311 1.0000 120 chr3R:9341181-9341301 1.0000 120 chr2R:9440998-9441118 1.0000 120 chr3R:9866299-9866419 1.0000 120 chr2R:10444129-10444249 1.0000 120 chr2R:18401877-18401997 1.0000 120 chrX:17658828-17658948 1.0000 120 chrX:5518209-5518329 1.0000 120 chrX:1619670-1619790 1.0000 120 chr2L:501841-501961 1.0000 120 chr3R:26004773-26004893 1.0000 120 chr3L:22948467-22948587 1.0000 120 chrX:7695799-7695919 1.0000 120 chrX:12471482-12471602 1.0000 120 chr3R:4433524-4433644 1.0000 120 chr3R:19225735-19225855 1.0000 120 chr3R:12477366-12477486 1.0000 120 chr3L:2585914-2586034 1.0000 120 chr3R:12720613-12720733 1.0000 120 chrX:7196098-7196218 1.0000 120 chr3R:21582072-21582192 1.0000 120 chr2L:11123316-11123436 1.0000 120 chrX:11372869-11372989 1.0000 120 chr2L:2194766-2194886 1.0000 120 chrX:2297370-2297490 1.0000 120 chr2L:8542398-8542518 1.0000 120 chr3R:11982637-11982757 1.0000 120 chr3R:9047386-9047506 1.0000 120 chr3R:15901347-15901467 1.0000 120 chr3L:18993907-18994027 1.0000 120 chr3L:19079355-19079475 1.0000 120 chrX:19315672-19315792 1.0000 120 chr3L:22909638-22909758 1.0000 120 chr2R:8722433-8722553 1.0000 120 chr2R:21713937-21714057 1.0000 120 chr3R:4807801-4807921 1.0000 120 chr3R:9015091-9015211 1.0000 120 chrX:6599997-6600117 1.0000 120 chr2R:16210461-16210581 1.0000 120 chr2R:13991806-13991926 1.0000 120 chr2L:486964-487084 1.0000 120 chr3R:23332209-23332329 1.0000 120 chr3R:23346178-23346298 1.0000 120 chr2L:16448229-16448349 1.0000 120 chr3L:1098872-1098992 1.0000 120 chr2R:19373235-19373355 1.0000 120 chr2L:19163663-19163783 1.0000 120 chrX:18634779-18634899 1.0000 120 chrX:10325360-10325480 1.0000 120 chrX:16089446-16089566 1.0000 120 chr3R:5701208-5701328 1.0000 120 chr3L:14757649-14757769 1.0000 120 chr2R:16221198-16221318 1.0000 120 chr2L:3545409-3545529 1.0000 120 chr3R:9534701-9534821 1.0000 120 chr2R:22940868-22940988 1.0000 120 chr2R:7458910-7459030 1.0000 120 chrX:17871277-17871397 1.0000 120 chrX:1388135-1388255 1.0000 120 chrX:13277260-13277380 1.0000 120 chr2R:10424100-10424220 1.0000 120 chrX:5886909-5887029 1.0000 120 chrX:22855369-22855489 1.0000 120 chr2L:483595-483715 1.0000 120 chr3L:7847798-7847918 1.0000 120 chr3R:12449633-12449753 1.0000 120 chr2L:223156-223276 1.0000 120 chr3R:17557626-17557746 1.0000 120 chr2L:19165411-19165531 1.0000 120 chr2R:13622892-13623012 1.0000 120 chr2R:9413648-9413768 1.0000 120 chr2R:12474223-12474343 1.0000 120 chr3R:25208359-25208479 1.0000 120 chr3R:4739029-4739149 1.0000 120 chr3L:1031420-1031540 1.0000 120 chr3L:7156463-7156583 1.0000 120 chr3L:9466064-9466184 1.0000 120 chr2R:17796184-17796304 1.0000 120 chr2R:24631033-24631153 1.0000 120 chr3R:21651651-21651771 1.0000 120 chr2L:3124839-3124959 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_SuH/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/SuH.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.252 C 0.24 G 0.243 T 0.266 Background letter frequencies (from file dataset with add-one prior applied): A 0.252 C 0.24 G 0.243 T 0.265 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GAGAGAGM MEME-1 width = 8 sites = 69 llr = 599 E-value = 4.5e-038 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAGAGM MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3a:a:7:5 pos.-specific C :::::3:3 probability G 7:a:a:a1 matrix T :::::::1 bits 2.1 * ** * 1.9 **** * 1.6 **** * 1.4 **** * Relative 1.2 ******* Entropy 1.0 ******* (12.5 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAGA consensus A C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGM MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5886909-5887029 26 1.41e-05 GAGCGCCAAA GAGAGAGA GCTTCGGCTG chr2R:22940868-22940988 39 1.41e-05 ACGGGAGCGG GAGAGAGA TCGATCGCGA chr2R:16221198-16221318 84 1.41e-05 gaaagagaga gagagaga gctgttggtg chrX:16089446-16089566 3 1.41e-05 ga gagagaga tagagagaga chr2R:16210461-16210581 45 1.41e-05 AACATTCGGA GAGAGAGA AAAAGGAGAG chrX:6599997-6600117 8 1.41e-05 TCGTCGC GAGAGAGA GGCAGCGGCG chr3R:4807801-4807921 39 1.41e-05 TAGAGCCTCT GAGAGAGA ACGCGAAATG chrX:11372869-11372989 39 1.41e-05 GTCGAagaga gagagaga gagtgagaga chr2L:501841-501961 11 1.41e-05 gagagagcga gagagaga gagCTGGCTC chrX:3143366-3143486 33 1.41e-05 gggttggaaa gagagaga gtgagagagg chr3R:6407670-6407790 20 1.41e-05 AGAGAGCAGT GAGAGAGA GGCGTCGGCT chr3L:1196201-1196321 31 1.41e-05 gcgagagaga gagagaga aataaagaga chrX:3555217-3555337 104 1.41e-05 cagaaagaga gagagaga gagagggcg chr2R:17794247-17794367 13 1.41e-05 gcgccacagg gagagaga gagagagaga chrX:18864989-18865109 8 1.41e-05 ACACAGC GAGAGAGA AAAGAGGAAG chr3R:9866100-9866220 103 1.41e-05 gggagagaga gagagaga gggagacaga chrX:15483313-15483433 38 1.41e-05 gcgagcggga gagagaga agacaaagCC chr3R:22626626-22626746 97 1.41e-05 agagtgcaga gagagaga ctgagtgaca chr2R:19325504-19325624 38 1.41e-05 AATCGGGCga gagagaga gagcggcaga chrX:18290819-18290939 31 1.41e-05 gagagggaga gagagaga gagagagaga chr2L:3124839-3124959 11 2.75e-05 GAGAGCGACT GAGAGAGC GTGGTGGCCG chr3R:15901347-15901467 109 2.75e-05 AGATTCGCTA GAGAGAGC CCGC chr3R:19225735-19225855 110 2.75e-05 TGAGAGAACT GAGAGAGC AGC chrX:12471482-12471602 64 2.75e-05 AAAAGTTTGC GAGAGAGC GGCCTCTCTC chr3L:22948467-22948587 28 2.75e-05 GGAAGGCGCC GAGAGAGC GATAAATTAA chrX:5518209-5518329 80 2.75e-05 agtttgtTTT GAGAGAGC GAGTATCGCT chr2R:19141956-19142076 19 2.75e-05 CGCGTCGACA GAGAGAGC CGAGAAAAAT chr3L:881040-881160 16 2.75e-05 AAATGCGAAG GAGAGAGC CCAAGTTTAT chr2L:12974999-12975119 91 2.75e-05 AATGGAGAGC GAGAGAGC CAGAGCGGAG chrX:17651405-17651525 18 2.75e-05 GTGGAAAGTA GAGAGAGC GCGTGGGTGG chr3L:9401246-9401366 11 2.75e-05 GTGTGTGTGC GAGAGAGC GAAGCTTTTG chr2L:12504942-12505062 18 2.75e-05 ACCAGAAAAT GAGAGAGC GAGAGCCACG chr3R:4739029-4739149 16 4.08e-05 CGGAAACGCa gagagcga aagagcgaag chr3L:16807690-16807810 104 4.08e-05 AAAGTAAGCG GAGAGCGA AAAGTTGCG chr3L:445907-446027 14 4.08e-05 CCTGAGAAAA GAGAGCGA GAGGAAAGGC chr3R:23239167-23239287 10 4.08e-05 tgggagtaa gagagcga gagcttggaa chrX:8870135-8870255 91 4.08e-05 gatcgagagc gagagcga gagctcgaga chr3R:11982637-11982757 68 5.54e-05 CCTCTTATCA AAGAGAGA ATAGTTCTGT chr3L:25230065-25230185 4 5.54e-05 tcg aagagaga atacacccgc chrX:3081695-3081815 8 5.54e-05 AGCACAA AAGAGAGA GTCTAACGGA chr2L:22145654-22145774 86 6.82e-05 ATCATGTGAA GAGAGCGC CAATGTCAAA chrX:17710913-17711033 46 6.82e-05 GCGCTCGACA GAGAGCGC GCGAGAGAAA chrX:10325360-10325480 2 8.17e-05 A GAGAGAGG TCGGAGAGAA chr2R:13991806-13991926 84 8.17e-05 CGAAGACATC GAGAGAGG AGAGCGGAGA chr2R:12686722-12686842 102 8.17e-05 AAGAGCGAGC GAGAGAGG AGCGGAGAAG chr3R:21096772-21096892 91 8.17e-05 AAGCGAGAGT GAGAGAGG GAGACTGGGA chrX:17871277-17871397 73 9.56e-05 GAGTCAGAGG AAGAGAGC CCCACTCTCT chr3L:1098872-1098992 7 9.56e-05 CAGCAG AAGAGAGC TCCACCGCGC chr3R:4433524-4433644 105 9.56e-05 GCGTCGAGTT AAGAGAGC ACACGATT chr2R:18401877-18401997 106 9.56e-05 CTCTTAATTT AAGAGAGC TTCCCAG chrX:11881887-11882007 65 9.56e-05 GAACAGCGGA AAGAGAGC AACCGTAGAT chrX:1619670-1619790 86 1.10e-04 GGAAAAGGCG AAGAGCGA GAACTGTTTG chr3R:2088401-2088521 63 1.10e-04 tctctttggc aagagcga gaacatcaac chr2L:3545409-3545529 59 1.22e-04 CCCATTTGCC GAGAGCGG GAGCACCCAG chr3R:4307692-4307812 44 1.22e-04 ACCCAACATT GAGAGCGG GCTTTTTCGC chrX:12546399-12546519 29 1.22e-04 ACCGCTTGGT GAGAGCGG AAAGTACCGC chr2R:24631033-24631153 8 1.50e-04 ATACAGA AAGAGCGC ACATTGTTTA chrX:22855369-22855489 1 1.50e-04 . AAGAGCGC GCTGAAGCCG chr3R:18447515-18447635 73 1.50e-04 ATTTGCAGCG AAGAGCGC CATTTCTCTC chr3R:22698510-22698630 82 1.50e-04 GTGAAGAGTA AAGAGCGC GTCTTGGGCA chr3R:11984285-11984405 90 1.50e-04 GAAGAGCTTG GAGAGAGT GGCACCACCC chr2R:13219260-13219380 106 1.50e-04 AATCGATATC GAGAGAGT TTGGGAG chr3L:19079355-19079475 37 1.65e-04 GGAGTGGAGA AAGAGAGG CAACACGCCC chr3R:8261844-8261964 109 1.79e-04 AACGCTACAT GAGAGCGT GAGA chr3R:18450405-18450525 5 1.92e-04 AGAA AAGAGCGG CGAATTATTA chr3R:23255717-23255837 71 2.22e-04 CGTGCTCCAG GAAAGAGA ACTAATGCTC chrX:12679052-12679172 78 2.64e-04 GCTCCTGCAG AAGAGCGT CAGCACACCG chr3L:1577874-1577994 16 2.79e-04 CGCACGGACA AAAAGAGA AAATGCCAGC chrX:10534335-10534455 47 2.79e-04 AGAGCAAAGC AAAAGAGA TTCACATAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGM MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5886909-5887029 1.4e-05 25_[+1]_87 chr2R:22940868-22940988 1.4e-05 38_[+1]_74 chr2R:16221198-16221318 1.4e-05 83_[+1]_29 chrX:16089446-16089566 1.4e-05 2_[+1]_110 chr2R:16210461-16210581 1.4e-05 44_[+1]_68 chrX:6599997-6600117 1.4e-05 7_[+1]_105 chr3R:4807801-4807921 1.4e-05 38_[+1]_74 chrX:11372869-11372989 1.4e-05 38_[+1]_74 chr2L:501841-501961 1.4e-05 10_[+1]_102 chrX:3143366-3143486 1.4e-05 32_[+1]_80 chr3R:6407670-6407790 1.4e-05 19_[+1]_93 chr3L:1196201-1196321 1.4e-05 30_[+1]_82 chrX:3555217-3555337 1.4e-05 103_[+1]_9 chr2R:17794247-17794367 1.4e-05 12_[+1]_100 chrX:18864989-18865109 1.4e-05 7_[+1]_105 chr3R:9866100-9866220 1.4e-05 102_[+1]_10 chrX:15483313-15483433 1.4e-05 37_[+1]_75 chr3R:22626626-22626746 1.4e-05 96_[+1]_16 chr2R:19325504-19325624 1.4e-05 37_[+1]_75 chrX:18290819-18290939 1.4e-05 30_[+1]_82 chr2L:3124839-3124959 2.7e-05 10_[+1]_102 chr3R:15901347-15901467 2.7e-05 108_[+1]_4 chr3R:19225735-19225855 2.7e-05 109_[+1]_3 chrX:12471482-12471602 2.7e-05 63_[+1]_49 chr3L:22948467-22948587 2.7e-05 27_[+1]_85 chrX:5518209-5518329 2.7e-05 79_[+1]_33 chr2R:19141956-19142076 2.7e-05 18_[+1]_94 chr3L:881040-881160 2.7e-05 15_[+1]_97 chr2L:12974999-12975119 2.7e-05 90_[+1]_22 chrX:17651405-17651525 2.7e-05 17_[+1]_95 chr3L:9401246-9401366 2.7e-05 10_[+1]_102 chr2L:12504942-12505062 2.7e-05 17_[+1]_95 chr3R:4739029-4739149 4.1e-05 15_[+1]_97 chr3L:16807690-16807810 4.1e-05 103_[+1]_9 chr3L:445907-446027 4.1e-05 13_[+1]_99 chr3R:23239167-23239287 4.1e-05 9_[+1]_103 chrX:8870135-8870255 4.1e-05 90_[+1]_22 chr3R:11982637-11982757 5.5e-05 67_[+1]_45 chr3L:25230065-25230185 5.5e-05 3_[+1]_109 chrX:3081695-3081815 5.5e-05 7_[+1]_105 chr2L:22145654-22145774 6.8e-05 85_[+1]_27 chrX:17710913-17711033 6.8e-05 45_[+1]_67 chrX:10325360-10325480 8.2e-05 1_[+1]_111 chr2R:13991806-13991926 8.2e-05 83_[+1]_29 chr2R:12686722-12686842 8.2e-05 101_[+1]_11 chr3R:21096772-21096892 8.2e-05 90_[+1]_22 chrX:17871277-17871397 9.6e-05 72_[+1]_40 chr3L:1098872-1098992 9.6e-05 6_[+1]_106 chr3R:4433524-4433644 9.6e-05 104_[+1]_8 chr2R:18401877-18401997 9.6e-05 105_[+1]_7 chrX:11881887-11882007 9.6e-05 64_[+1]_48 chrX:1619670-1619790 0.00011 85_[+1]_27 chr3R:2088401-2088521 0.00011 62_[+1]_50 chr2L:3545409-3545529 0.00012 58_[+1]_54 chr3R:4307692-4307812 0.00012 43_[+1]_69 chrX:12546399-12546519 0.00012 28_[+1]_84 chr2R:24631033-24631153 0.00015 7_[+1]_105 chrX:22855369-22855489 0.00015 [+1]_112 chr3R:18447515-18447635 0.00015 72_[+1]_40 chr3R:22698510-22698630 0.00015 81_[+1]_31 chr3R:11984285-11984405 0.00015 89_[+1]_23 chr2R:13219260-13219380 0.00015 105_[+1]_7 chr3L:19079355-19079475 0.00016 36_[+1]_76 chr3R:8261844-8261964 0.00018 108_[+1]_4 chr3R:18450405-18450525 0.00019 4_[+1]_108 chr3R:23255717-23255837 0.00022 70_[+1]_42 chrX:12679052-12679172 0.00026 77_[+1]_35 chr3L:1577874-1577994 0.00028 15_[+1]_97 chrX:10534335-10534455 0.00028 46_[+1]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGM MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAGAGM width=8 seqs=69 chrX:5886909-5887029 ( 26) GAGAGAGA 1 chr2R:22940868-22940988 ( 39) GAGAGAGA 1 chr2R:16221198-16221318 ( 84) GAGAGAGA 1 chrX:16089446-16089566 ( 3) GAGAGAGA 1 chr2R:16210461-16210581 ( 45) GAGAGAGA 1 chrX:6599997-6600117 ( 8) GAGAGAGA 1 chr3R:4807801-4807921 ( 39) GAGAGAGA 1 chrX:11372869-11372989 ( 39) GAGAGAGA 1 chr2L:501841-501961 ( 11) GAGAGAGA 1 chrX:3143366-3143486 ( 33) GAGAGAGA 1 chr3R:6407670-6407790 ( 20) GAGAGAGA 1 chr3L:1196201-1196321 ( 31) GAGAGAGA 1 chrX:3555217-3555337 ( 104) GAGAGAGA 1 chr2R:17794247-17794367 ( 13) GAGAGAGA 1 chrX:18864989-18865109 ( 8) GAGAGAGA 1 chr3R:9866100-9866220 ( 103) GAGAGAGA 1 chrX:15483313-15483433 ( 38) GAGAGAGA 1 chr3R:22626626-22626746 ( 97) GAGAGAGA 1 chr2R:19325504-19325624 ( 38) GAGAGAGA 1 chrX:18290819-18290939 ( 31) GAGAGAGA 1 chr2L:3124839-3124959 ( 11) GAGAGAGC 1 chr3R:15901347-15901467 ( 109) GAGAGAGC 1 chr3R:19225735-19225855 ( 110) GAGAGAGC 1 chrX:12471482-12471602 ( 64) GAGAGAGC 1 chr3L:22948467-22948587 ( 28) GAGAGAGC 1 chrX:5518209-5518329 ( 80) GAGAGAGC 1 chr2R:19141956-19142076 ( 19) GAGAGAGC 1 chr3L:881040-881160 ( 16) GAGAGAGC 1 chr2L:12974999-12975119 ( 91) GAGAGAGC 1 chrX:17651405-17651525 ( 18) GAGAGAGC 1 chr3L:9401246-9401366 ( 11) GAGAGAGC 1 chr2L:12504942-12505062 ( 18) GAGAGAGC 1 chr3R:4739029-4739149 ( 16) GAGAGCGA 1 chr3L:16807690-16807810 ( 104) GAGAGCGA 1 chr3L:445907-446027 ( 14) GAGAGCGA 1 chr3R:23239167-23239287 ( 10) GAGAGCGA 1 chrX:8870135-8870255 ( 91) GAGAGCGA 1 chr3R:11982637-11982757 ( 68) AAGAGAGA 1 chr3L:25230065-25230185 ( 4) AAGAGAGA 1 chrX:3081695-3081815 ( 8) AAGAGAGA 1 chr2L:22145654-22145774 ( 86) GAGAGCGC 1 chrX:17710913-17711033 ( 46) GAGAGCGC 1 chrX:10325360-10325480 ( 2) GAGAGAGG 1 chr2R:13991806-13991926 ( 84) GAGAGAGG 1 chr2R:12686722-12686842 ( 102) GAGAGAGG 1 chr3R:21096772-21096892 ( 91) GAGAGAGG 1 chrX:17871277-17871397 ( 73) AAGAGAGC 1 chr3L:1098872-1098992 ( 7) AAGAGAGC 1 chr3R:4433524-4433644 ( 105) AAGAGAGC 1 chr2R:18401877-18401997 ( 106) AAGAGAGC 1 chrX:11881887-11882007 ( 65) AAGAGAGC 1 chrX:1619670-1619790 ( 86) AAGAGCGA 1 chr3R:2088401-2088521 ( 63) AAGAGCGA 1 chr2L:3545409-3545529 ( 59) GAGAGCGG 1 chr3R:4307692-4307812 ( 44) GAGAGCGG 1 chrX:12546399-12546519 ( 29) GAGAGCGG 1 chr2R:24631033-24631153 ( 8) AAGAGCGC 1 chrX:22855369-22855489 ( 1) AAGAGCGC 1 chr3R:18447515-18447635 ( 73) AAGAGCGC 1 chr3R:22698510-22698630 ( 82) AAGAGCGC 1 chr3R:11984285-11984405 ( 90) GAGAGAGT 1 chr2R:13219260-13219380 ( 106) GAGAGAGT 1 chr3L:19079355-19079475 ( 37) AAGAGAGG 1 chr3R:8261844-8261964 ( 109) GAGAGCGT 1 chr3R:18450405-18450525 ( 5) AAGAGCGG 1 chr3R:23255717-23255837 ( 71) GAAAGAGA 1 chrX:12679052-12679172 ( 78) AAGAGCGT 1 chr3L:1577874-1577994 ( 16) AAAAGAGA 1 chrX:10534335-10534455 ( 47) AAAAGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGM MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.0512 E= 4.5e-038 13 -1275 158 -1275 199 -1275 -1275 -1275 -254 -1275 198 -1275 199 -1275 -1275 -1275 -1275 -1275 204 -1275 152 20 -1275 -1275 -1275 -1275 204 -1275 92 48 -90 -219 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGM MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 4.5e-038 0.275362 0.000000 0.724638 0.000000 1.000000 0.000000 0.000000 0.000000 0.043478 0.000000 0.956522 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.724638 0.275362 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.478261 0.333333 0.130435 0.057971 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGM MEME-1 regular expression -------------------------------------------------------------------------------- [GA]AGAG[AC]G[AC] -------------------------------------------------------------------------------- Time 7.45 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCTCTCT MEME-2 width = 8 sites = 69 llr = 596 E-value = 8.4e-036 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:::1:: pos.-specific C 9:a:a:8: probability G :2:::1:: matrix T 17:a:82a bits 2.1 * 1.9 * * 1.6 * *** * 1.4 * *** ** Relative 1.2 * ****** Entropy 1.0 * ****** (12.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTCTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7156463-7156583 7 1.64e-05 CGTTTC ctctctct ctttctctct chr3R:25208359-25208479 78 1.64e-05 tctttgctct ctctctct cgctTGGAAT chr2R:12474223-12474343 39 1.64e-05 gcctctccca ctctctct cgccgctctc chr3R:17557626-17557746 19 1.64e-05 GTCTCGCCGT CTCTCTCT TTCGACGGGT chr3L:7847798-7847918 72 1.64e-05 CTCTCGCCCG CTCTCTCT GTGTGAGTAA chrX:13277260-13277380 96 1.64e-05 gattttctcg ctctctct ctctctctct chrX:1388135-1388255 82 1.64e-05 CTCTTTCCCG ctctctct ctctctctct chr3L:1098872-1098992 35 1.64e-05 GCTtctctct ctctctct ctctgcctct chr3R:23346178-23346298 72 1.64e-05 ctctccgttt ctctctct ctttctctcC chr2L:486964-487084 98 1.64e-05 Ttctctccct ctctctct cccgctctct chr2R:21713937-21714057 91 1.64e-05 TTCTCCCGCA CTCTCTCT ATCGAACATC chrX:7196098-7196218 51 1.64e-05 cCATACTCCA CTCTCTCT CCCTCTCTCG chrX:12471482-12471602 75 1.64e-05 AGAGAGCGGC CTCTCTCT TTCCCGCTCC chr2R:10444129-10444249 111 1.64e-05 CTCTTATCCT CTCTCTCT GC chr2R:19141956-19142076 111 1.64e-05 cactctcact ctctctct ct chr3L:12804414-12804534 93 1.64e-05 ctctccctct ctctctct cacagtcgta chrX:11622706-11622826 112 1.64e-05 GATCATAAAG ctctctct c chr3L:17668061-17668181 86 1.64e-05 GGATCTCTTG CTCTCTCT GTCGCTCTTG chrX:8894036-8894156 86 1.64e-05 TCTCTTTTGA CTCTCTCT TTCGGTCACT chr2R:5773114-5773234 88 1.64e-05 ctctctctct ctctctct ctctGCTGTT chrX:15633505-15633625 23 1.64e-05 ccctctctct ctctctct ctctctGGTG chr2R:21175208-21175328 37 1.64e-05 cgccctctct ctctctct ctctctctcG chr2R:4271828-4271948 94 1.64e-05 GCGACTCATT CTCTCTCT ACAAATACTC chrX:4204080-4204200 76 1.64e-05 cgccttctct ctctctct atgtctACTG chr3L:21225788-21225908 58 1.64e-05 CACTTCTGCC CTCTCTCT TTCTCGCGCA chrX:2255157-2255277 108 1.64e-05 ctctctctct ctctctct ctctc chr2R:17796184-17796304 33 3.14e-05 GCACTGGTGC CGCTCTCT CAGTTTCTCC chr3L:9466064-9466184 33 3.14e-05 AAAATTGTTG CGCTCTCT CATTTCTGCG chr2R:13991806-13991926 16 3.14e-05 TTCTCTCATT CGCTCTCT TTGAGTTATA chr2R:8722433-8722553 62 3.14e-05 CGCAGATTCG CGCTCTCT TAAGGGCAGA chr3L:2585914-2586034 90 3.14e-05 ctcttcttct cgctctct gtctctctcc chrX:17658828-17658948 14 3.14e-05 ctctcttcat cgctctct GTGATGAACT chr3L:14221258-14221378 18 3.14e-05 GGGATCGGAT CGCTCTCT TTCTTCGGTC chrX:499273-499393 103 3.14e-05 CAGctctctc cgctctct tctgtctctc chr3R:2088401-2088521 99 3.14e-05 gctggctctc cgctctct agttggatcg chr3R:9534701-9534821 101 4.94e-05 ACCCCACCGC CTCTCTTT CGCTCTCCGG chr2R:19373235-19373355 86 4.94e-05 CCAGGGGCTA CTCTCTTT CTTTTCGGTT chrX:7967191-7967311 20 4.94e-05 GATCCACATG CTCTCTTT TCGCTCACGT chr2L:19756515-19756635 112 4.94e-05 GGCGCGTTAG CTCTCTTT T chr2L:16451184-16451304 14 4.94e-05 AGATGACTGG CTCTCTTT GGCTCAGTTT chr3L:22910393-22910513 30 4.94e-05 TTCTCTCCGG CTCTCTTT GTGCTGCTGC chrX:3081695-3081815 52 4.94e-05 GACTGAGATT CTCTCTTT GATCGCTTCT chrX:17871277-17871397 83 6.50e-05 AAGAGAGCCC CACTCTCT CGAAATCGAA chr2R:7458910-7459030 8 6.50e-05 AGAGGCG CACTCTCT TATTCCGCGA chr3R:15901347-15901467 83 6.50e-05 ACCAGATTCG CACTCTCT GCCGGCAAAG chr3R:18447515-18447635 105 6.50e-05 GATTTTTTTA CACTCTCT TATGAGAG chr3R:4307692-4307812 109 6.50e-05 CCCAGACTTG CACTCTCT TAAT chr2R:13622892-13623012 56 8.00e-05 CGCGCTCTCG CTCTCGCT GGAAGGCGGC chrX:2297370-2297490 102 8.00e-05 CAGGCAAACT CTCTCGCT GAGAAACCAG chr3L:881040-881160 41 8.00e-05 TATCTCTTCA CTCTCGCT CTTTGCAAGC chrX:12546399-12546519 3 8.00e-05 ct ctctcgct attgctctAC chr3R:8090469-8090589 41 8.00e-05 AATCACTCCA CTCTCGCT GCGAAATTGT chr3R:23239167-23239287 63 9.56e-05 GGCTGGAGCG CTCTCACT GGAATCAGTG chr3L:6943459-6943579 110 9.56e-05 TGGCCGAGTG ctctcact cac chr2L:12015535-12015655 96 9.56e-05 GCATATATAG CTCTCACT GAGTTCGTGT chrX:19315672-19315792 51 1.14e-04 TGGCGATACT TTCTCTCT GAGTCGTCGG chr2R:9440998-9441118 108 1.14e-04 TGCTCTCCCT TTCTCTCT TGACC chr3R:21651651-21651771 91 1.29e-04 TTTCCTCCTC CTCTCTCG TTTGGTGTTG chr2L:2194766-2194886 91 1.60e-04 CTAGCCCTTT CTCCCTCT GACTCCCCTT chr3R:9341181-9341301 81 1.60e-04 TGTCTCTTGT CTCCCTCT GTTCCCCTTC chr3R:4739029-4739149 74 1.90e-04 TTTTAATTGC CTGTCTCT GACAAGGTGT chr2R:10602977-10603097 100 1.90e-04 CTTACTGCTG CTGTCTCT GTCGCTAAGC chr3R:8094058-8094178 68 2.70e-04 CACGGACGCC CTCTCATT CGGTTCTTGC chrX:19164261-19164381 65 2.70e-04 TGGGTTTCCA CACTCGCT GCAGGATATA chr2R:20276700-20276820 2 3.01e-04 T CACTCACT TCTCTCCAAT chr2L:12504942-12505062 71 3.15e-04 GTGAATTTTG CGCTCTCG ACAAGAGGAA chr2L:517615-517735 25 3.35e-04 TGATGATGAG TTCTCTTT TGAGAGAAGC chr2R:8565941-8566061 57 3.35e-04 GCCGCTTAGT TTCTCTTT ATATACCAAA chr2L:22145654-22145774 39 7.10e-04 CATACCAATG CGCTCTTG TCCGCCTCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7156463-7156583 1.6e-05 6_[+2]_106 chr3R:25208359-25208479 1.6e-05 77_[+2]_35 chr2R:12474223-12474343 1.6e-05 38_[+2]_74 chr3R:17557626-17557746 1.6e-05 18_[+2]_94 chr3L:7847798-7847918 1.6e-05 71_[+2]_41 chrX:13277260-13277380 1.6e-05 95_[+2]_17 chrX:1388135-1388255 1.6e-05 81_[+2]_31 chr3L:1098872-1098992 1.6e-05 34_[+2]_78 chr3R:23346178-23346298 1.6e-05 71_[+2]_41 chr2L:486964-487084 1.6e-05 97_[+2]_15 chr2R:21713937-21714057 1.6e-05 90_[+2]_22 chrX:7196098-7196218 1.6e-05 50_[+2]_62 chrX:12471482-12471602 1.6e-05 74_[+2]_38 chr2R:10444129-10444249 1.6e-05 110_[+2]_2 chr2R:19141956-19142076 1.6e-05 110_[+2]_2 chr3L:12804414-12804534 1.6e-05 92_[+2]_20 chrX:11622706-11622826 1.6e-05 111_[+2]_1 chr3L:17668061-17668181 1.6e-05 85_[+2]_27 chrX:8894036-8894156 1.6e-05 85_[+2]_27 chr2R:5773114-5773234 1.6e-05 87_[+2]_25 chrX:15633505-15633625 1.6e-05 22_[+2]_90 chr2R:21175208-21175328 1.6e-05 36_[+2]_76 chr2R:4271828-4271948 1.6e-05 93_[+2]_19 chrX:4204080-4204200 1.6e-05 75_[+2]_37 chr3L:21225788-21225908 1.6e-05 57_[+2]_55 chrX:2255157-2255277 1.6e-05 107_[+2]_5 chr2R:17796184-17796304 3.1e-05 32_[+2]_80 chr3L:9466064-9466184 3.1e-05 32_[+2]_80 chr2R:13991806-13991926 3.1e-05 15_[+2]_97 chr2R:8722433-8722553 3.1e-05 61_[+2]_51 chr3L:2585914-2586034 3.1e-05 89_[+2]_23 chrX:17658828-17658948 3.1e-05 13_[+2]_99 chr3L:14221258-14221378 3.1e-05 17_[+2]_95 chrX:499273-499393 3.1e-05 102_[+2]_10 chr3R:2088401-2088521 3.1e-05 98_[+2]_14 chr3R:9534701-9534821 4.9e-05 100_[+2]_12 chr2R:19373235-19373355 4.9e-05 85_[+2]_27 chrX:7967191-7967311 4.9e-05 19_[+2]_93 chr2L:19756515-19756635 4.9e-05 111_[+2]_1 chr2L:16451184-16451304 4.9e-05 13_[+2]_99 chr3L:22910393-22910513 4.9e-05 29_[+2]_83 chrX:3081695-3081815 4.9e-05 51_[+2]_61 chrX:17871277-17871397 6.5e-05 82_[+2]_30 chr2R:7458910-7459030 6.5e-05 7_[+2]_105 chr3R:15901347-15901467 6.5e-05 82_[+2]_30 chr3R:18447515-18447635 6.5e-05 104_[+2]_8 chr3R:4307692-4307812 6.5e-05 108_[+2]_4 chr2R:13622892-13623012 8e-05 55_[+2]_57 chrX:2297370-2297490 8e-05 101_[+2]_11 chr3L:881040-881160 8e-05 40_[+2]_72 chrX:12546399-12546519 8e-05 2_[+2]_110 chr3R:8090469-8090589 8e-05 40_[+2]_72 chr3R:23239167-23239287 9.6e-05 62_[+2]_50 chr3L:6943459-6943579 9.6e-05 109_[+2]_3 chr2L:12015535-12015655 9.6e-05 95_[+2]_17 chrX:19315672-19315792 0.00011 50_[+2]_62 chr2R:9440998-9441118 0.00011 107_[+2]_5 chr3R:21651651-21651771 0.00013 90_[+2]_22 chr2L:2194766-2194886 0.00016 90_[+2]_22 chr3R:9341181-9341301 0.00016 80_[+2]_32 chr3R:4739029-4739149 0.00019 73_[+2]_39 chr2R:10602977-10603097 0.00019 99_[+2]_13 chr3R:8094058-8094178 0.00027 67_[+2]_45 chrX:19164261-19164381 0.00027 64_[+2]_48 chr2R:20276700-20276820 0.0003 1_[+2]_111 chr2L:12504942-12505062 0.00031 70_[+2]_42 chr2L:517615-517735 0.00033 24_[+2]_88 chr2R:8565941-8566061 0.00033 56_[+2]_56 chr2L:22145654-22145774 0.00071 38_[+2]_74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTCTCT width=8 seqs=69 chr3L:7156463-7156583 ( 7) CTCTCTCT 1 chr3R:25208359-25208479 ( 78) CTCTCTCT 1 chr2R:12474223-12474343 ( 39) CTCTCTCT 1 chr3R:17557626-17557746 ( 19) CTCTCTCT 1 chr3L:7847798-7847918 ( 72) CTCTCTCT 1 chrX:13277260-13277380 ( 96) CTCTCTCT 1 chrX:1388135-1388255 ( 82) CTCTCTCT 1 chr3L:1098872-1098992 ( 35) CTCTCTCT 1 chr3R:23346178-23346298 ( 72) CTCTCTCT 1 chr2L:486964-487084 ( 98) CTCTCTCT 1 chr2R:21713937-21714057 ( 91) CTCTCTCT 1 chrX:7196098-7196218 ( 51) CTCTCTCT 1 chrX:12471482-12471602 ( 75) CTCTCTCT 1 chr2R:10444129-10444249 ( 111) CTCTCTCT 1 chr2R:19141956-19142076 ( 111) CTCTCTCT 1 chr3L:12804414-12804534 ( 93) CTCTCTCT 1 chrX:11622706-11622826 ( 112) CTCTCTCT 1 chr3L:17668061-17668181 ( 86) CTCTCTCT 1 chrX:8894036-8894156 ( 86) CTCTCTCT 1 chr2R:5773114-5773234 ( 88) CTCTCTCT 1 chrX:15633505-15633625 ( 23) CTCTCTCT 1 chr2R:21175208-21175328 ( 37) CTCTCTCT 1 chr2R:4271828-4271948 ( 94) CTCTCTCT 1 chrX:4204080-4204200 ( 76) CTCTCTCT 1 chr3L:21225788-21225908 ( 58) CTCTCTCT 1 chrX:2255157-2255277 ( 108) CTCTCTCT 1 chr2R:17796184-17796304 ( 33) CGCTCTCT 1 chr3L:9466064-9466184 ( 33) CGCTCTCT 1 chr2R:13991806-13991926 ( 16) CGCTCTCT 1 chr2R:8722433-8722553 ( 62) CGCTCTCT 1 chr3L:2585914-2586034 ( 90) CGCTCTCT 1 chrX:17658828-17658948 ( 14) CGCTCTCT 1 chr3L:14221258-14221378 ( 18) CGCTCTCT 1 chrX:499273-499393 ( 103) CGCTCTCT 1 chr3R:2088401-2088521 ( 99) CGCTCTCT 1 chr3R:9534701-9534821 ( 101) CTCTCTTT 1 chr2R:19373235-19373355 ( 86) CTCTCTTT 1 chrX:7967191-7967311 ( 20) CTCTCTTT 1 chr2L:19756515-19756635 ( 112) CTCTCTTT 1 chr2L:16451184-16451304 ( 14) CTCTCTTT 1 chr3L:22910393-22910513 ( 30) CTCTCTTT 1 chrX:3081695-3081815 ( 52) CTCTCTTT 1 chrX:17871277-17871397 ( 83) CACTCTCT 1 chr2R:7458910-7459030 ( 8) CACTCTCT 1 chr3R:15901347-15901467 ( 83) CACTCTCT 1 chr3R:18447515-18447635 ( 105) CACTCTCT 1 chr3R:4307692-4307812 ( 109) CACTCTCT 1 chr2R:13622892-13623012 ( 56) CTCTCGCT 1 chrX:2297370-2297490 ( 102) CTCTCGCT 1 chr3L:881040-881160 ( 41) CTCTCGCT 1 chrX:12546399-12546519 ( 3) CTCTCGCT 1 chr3R:8090469-8090589 ( 41) CTCTCGCT 1 chr3R:23239167-23239287 ( 63) CTCTCACT 1 chr3L:6943459-6943579 ( 110) CTCTCACT 1 chr2L:12015535-12015655 ( 96) CTCTCACT 1 chrX:19315672-19315792 ( 51) TTCTCTCT 1 chr2R:9440998-9441118 ( 108) TTCTCTCT 1 chr3R:21651651-21651771 ( 91) CTCTCTCG 1 chr2L:2194766-2194886 ( 91) CTCCCTCT 1 chr3R:9341181-9341301 ( 81) CTCCCTCT 1 chr3R:4739029-4739149 ( 74) CTGTCTCT 1 chr2R:10602977-10603097 ( 100) CTGTCTCT 1 chr3R:8094058-8094178 ( 68) CTCTCATT 1 chrX:19164261-19164381 ( 65) CACTCGCT 1 chr2R:20276700-20276820 ( 2) CACTCACT 1 chr2L:12504942-12505062 ( 71) CGCTCTCG 1 chr2L:517615-517735 ( 25) TTCTCTTT 1 chr2R:8565941-8566061 ( 57) TTCTCTTT 1 chr2L:22145654-22145774 ( 39) CGCTCTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.0512 E= 8.4e-036 -1275 198 -1275 -219 -131 -1275 -61 148 -1275 202 -306 -1275 -1275 -305 -1275 187 -1275 206 -1275 -1275 -180 -1275 -148 166 -1275 181 -1275 -74 -1275 -1275 -248 185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 8.4e-036 0.000000 0.942029 0.000000 0.057971 0.101449 0.000000 0.159420 0.739130 0.000000 0.971014 0.028986 0.000000 0.000000 0.028986 0.000000 0.971014 0.000000 1.000000 0.000000 0.000000 0.072464 0.000000 0.086957 0.840580 0.000000 0.840580 0.000000 0.159420 0.000000 0.000000 0.043478 0.956522 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 regular expression -------------------------------------------------------------------------------- CTCTCTCT -------------------------------------------------------------------------------- Time 13.68 secs. ******************************************************************************** ******************************************************************************** MOTIF KCTCTCTC MEME-3 width = 8 sites = 55 llr = 443 E-value = 1.0e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif KCTCTCTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:a1938 probability G 4:1::::2 matrix T 6:9:9171 bits 2.1 * * 1.9 * * 1.6 * * 1.4 ***** Relative 1.2 ***** Entropy 1.0 ******** (11.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCTC consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTCTCTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7156463-7156583 18 1.64e-05 tctctctctt tctctctc tGGTTCACTT chrX:13277260-13277380 107 1.64e-05 tctctctctc tctctctc tATTTT chrX:1388135-1388255 99 1.64e-05 tctctctctc tctctctc tctctctTAA chr3R:23346178-23346298 59 1.64e-05 cgacgcACCT tctctctc cgtttctctc chr2L:486964-487084 113 1.64e-05 tctcccgctc tctctctc chr3L:2585914-2586034 99 1.64e-05 tcgctctctg tctctctc catctctctt chrX:7967191-7967311 38 1.64e-05 TCGCTCACGT TCTCTCTC CCGCGCGTTA chr3R:18447515-18447635 85 1.64e-05 GAGCGCCATT TCTCTCTC GCGATTTTTT chr3L:17668061-17668181 48 1.64e-05 TAACTTACAT TCTCTCTC GTTCGCCGCT chr2R:5773114-5773234 79 1.64e-05 CCACGctctc tctctctc tctctctctc chr2R:21175208-21175328 46 1.64e-05 tctctctctc tctctctc GCGGCAGAAC chrX:4204080-4204200 49 1.64e-05 TCAAGCTTTG tctctctc gctctctttc chrX:2255157-2255277 97 1.64e-05 tcActctctc tctctctc tctctctctc chr3L:9466064-9466184 57 3.14e-05 TGCGGTGGCT GCTCTCTC CTGGCTCCCA chr3L:7847798-7847918 59 3.14e-05 GCAACCGATA GCTCTCTC GCCCGCTCTC chr3R:9534701-9534821 60 3.14e-05 TAAACAAGTT GCTCTCTC GCTTGCTCAC chr3L:12804414-12804534 72 3.14e-05 TGGAAGTGCT Gctctctc ccactctccc chrX:499273-499393 95 3.14e-05 CGTTCTTTCA Gctctctc cgctctcttc chrX:8894036-8894156 107 4.62e-05 GGTCACTTCA TCTCTCCC TCGCAA chr2R:9440998-9441118 99 5.98e-05 CACAGCCTTT GCTCTCCC TTTCTCTCTT chr3L:14221258-14221378 105 5.98e-05 CCCCAAATTC GCTCTCCC AGTCTCTC chr3L:881040-881160 71 5.98e-05 GCTCTTCGCT GCTCTCCC ACTGCAGTTG chr2L:12974999-12975119 113 5.98e-05 GCGGAGAGTT GCTCTCCC chr3R:23252221-23252341 11 5.98e-05 TTCGCTACCT GCTCTCCC GTCGAGCAGC chr2R:4270880-4271000 28 5.98e-05 tacggtctca gctctccc actctgaact chr2L:527408-527528 86 7.63e-05 TATGTATGTA TCTCTCtg tgtgtgtgtg chr2R:24631033-24631153 61 9.15e-05 TGGCGAAGTA GCTCTCTG AATTTTTCGG chr2R:17796184-17796304 96 9.15e-05 GCAGCGAAAA GCTCTCTG GAGGGCACTT chr2R:12474223-12474343 16 9.15e-05 CGAGCTTTTA Gctctctg tctctgcctc chrX:3081695-3081815 79 9.15e-05 TTTGAGCTTG GCTCTCTG GCCAAAGAAA chr2L:483595-483715 84 1.06e-04 CTGCCCCTTT TCTCCCTC GCACCTCTCG chrX:15633505-15633625 10 1.06e-04 ctcactcga tctccctc tctctctctc chr3L:21225788-21225908 96 1.06e-04 CCCATTGCCC TCTCCCTC GAGGATAGTG chr3R:12449633-12449753 110 1.21e-04 ATTCctctat tcgctctc aat chr2L:13331216-13331336 81 1.21e-04 CCTCTTTGAG TCGCTCTC AAAGCTCGAC chr2R:19373235-19373355 47 1.53e-04 GGCACGGTCC TCTCTTTC GACGACAGGA chr2R:8722433-8722553 84 1.53e-04 GGCAGAGCAT TCTCTTTC ATTTTCAGAA chrX:2297370-2297490 77 1.53e-04 CGGCAGCCAG GCTCCCTC GCTCGCTCAG chr2R:19141956-19142076 94 1.53e-04 gcccgcccgc tctctttc actctcactc chr2L:21141725-21141845 21 1.53e-04 TACTTCAAAC GCTCCCTC GGGGTCACAG chr2R:13622892-13623012 47 1.67e-04 GAAAGTTGCC GCGCTCTC GCTCTCGCTG chrX:7196098-7196218 79 1.67e-04 CTGAGCTGTG GCGCTCTC TTCTTCCGCC chr3R:17557626-17557746 1 1.98e-04 . TCTCTCCG GTCTCGCCGT chr3L:22910393-22910513 21 1.98e-04 TCGCTCACTT TCTCTCCG GCTCTCTTTG chrX:17658828-17658948 3 2.30e-04 tg tctctctt catcgctctc chr2R:10444129-10444249 98 2.30e-04 CGGCGCAAGT TCTCTCTT ATCCTCTCTC chr2L:20312096-20312216 29 2.30e-04 TTAAGGCGCC GCTCTCCG AGGACCAGGC chr3R:25208359-25208479 35 2.74e-04 ACTTGAACTT GCTCTCTT GTGGATCGCA chr2L:11123316-11123436 107 2.74e-04 TTCTGCAGAG TCGCTCCC CGGGCA chr3L:9401246-9401366 74 2.74e-04 TCGTGATATC TCGCTCCC CTGCAGTTCG chrX:19712849-19712969 79 3.02e-04 CGAGCGCAAT TCTCTTCC TCCGGACAAC chr2R:17794247-17794367 89 3.17e-04 TACGTAACGG TCTCCCTG CATACCCCAC chr3R:22698510-22698630 107 3.60e-04 GCATTTATTT GCTCTTCC GTCCGG chr3R:2088401-2088521 53 3.92e-04 tcggttatcg tctctttg gcaagagcga chr2L:12015535-12015655 8 4.69e-04 GCGGCCA TCTCCTTC GCTGCGAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTCTCTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7156463-7156583 1.6e-05 17_[+3]_95 chrX:13277260-13277380 1.6e-05 106_[+3]_6 chrX:1388135-1388255 1.6e-05 98_[+3]_14 chr3R:23346178-23346298 1.6e-05 58_[+3]_54 chr2L:486964-487084 1.6e-05 112_[+3] chr3L:2585914-2586034 1.6e-05 98_[+3]_14 chrX:7967191-7967311 1.6e-05 37_[+3]_75 chr3R:18447515-18447635 1.6e-05 84_[+3]_28 chr3L:17668061-17668181 1.6e-05 47_[+3]_65 chr2R:5773114-5773234 1.6e-05 78_[+3]_34 chr2R:21175208-21175328 1.6e-05 45_[+3]_67 chrX:4204080-4204200 1.6e-05 48_[+3]_64 chrX:2255157-2255277 1.6e-05 96_[+3]_16 chr3L:9466064-9466184 3.1e-05 56_[+3]_56 chr3L:7847798-7847918 3.1e-05 58_[+3]_54 chr3R:9534701-9534821 3.1e-05 59_[+3]_53 chr3L:12804414-12804534 3.1e-05 71_[+3]_41 chrX:499273-499393 3.1e-05 94_[+3]_18 chrX:8894036-8894156 4.6e-05 106_[+3]_6 chr2R:9440998-9441118 6e-05 98_[+3]_14 chr3L:14221258-14221378 6e-05 104_[+3]_8 chr3L:881040-881160 6e-05 70_[+3]_42 chr2L:12974999-12975119 6e-05 112_[+3] chr3R:23252221-23252341 6e-05 10_[+3]_102 chr2R:4270880-4271000 6e-05 27_[+3]_85 chr2L:527408-527528 7.6e-05 85_[+3]_27 chr2R:24631033-24631153 9.2e-05 60_[+3]_52 chr2R:17796184-17796304 9.2e-05 95_[+3]_17 chr2R:12474223-12474343 9.2e-05 15_[+3]_97 chrX:3081695-3081815 9.2e-05 78_[+3]_34 chr2L:483595-483715 0.00011 83_[+3]_29 chrX:15633505-15633625 0.00011 9_[+3]_103 chr3L:21225788-21225908 0.00011 95_[+3]_17 chr3R:12449633-12449753 0.00012 109_[+3]_3 chr2L:13331216-13331336 0.00012 80_[+3]_32 chr2R:19373235-19373355 0.00015 46_[+3]_66 chr2R:8722433-8722553 0.00015 83_[+3]_29 chrX:2297370-2297490 0.00015 76_[+3]_36 chr2R:19141956-19142076 0.00015 93_[+3]_19 chr2L:21141725-21141845 0.00015 20_[+3]_92 chr2R:13622892-13623012 0.00017 46_[+3]_66 chrX:7196098-7196218 0.00017 78_[+3]_34 chr3R:17557626-17557746 0.0002 [+3]_112 chr3L:22910393-22910513 0.0002 20_[+3]_92 chrX:17658828-17658948 0.00023 2_[+3]_110 chr2R:10444129-10444249 0.00023 97_[+3]_15 chr2L:20312096-20312216 0.00023 28_[+3]_84 chr3R:25208359-25208479 0.00027 34_[+3]_78 chr2L:11123316-11123436 0.00027 106_[+3]_6 chr3L:9401246-9401366 0.00027 73_[+3]_39 chrX:19712849-19712969 0.0003 78_[+3]_34 chr2R:17794247-17794367 0.00032 88_[+3]_24 chr3R:22698510-22698630 0.00036 106_[+3]_6 chr3R:2088401-2088521 0.00039 52_[+3]_60 chr2L:12015535-12015655 0.00047 7_[+3]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTCTCTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KCTCTCTC width=8 seqs=55 chr3L:7156463-7156583 ( 18) TCTCTCTC 1 chrX:13277260-13277380 ( 107) TCTCTCTC 1 chrX:1388135-1388255 ( 99) TCTCTCTC 1 chr3R:23346178-23346298 ( 59) TCTCTCTC 1 chr2L:486964-487084 ( 113) TCTCTCTC 1 chr3L:2585914-2586034 ( 99) TCTCTCTC 1 chrX:7967191-7967311 ( 38) TCTCTCTC 1 chr3R:18447515-18447635 ( 85) TCTCTCTC 1 chr3L:17668061-17668181 ( 48) TCTCTCTC 1 chr2R:5773114-5773234 ( 79) TCTCTCTC 1 chr2R:21175208-21175328 ( 46) TCTCTCTC 1 chrX:4204080-4204200 ( 49) TCTCTCTC 1 chrX:2255157-2255277 ( 97) TCTCTCTC 1 chr3L:9466064-9466184 ( 57) GCTCTCTC 1 chr3L:7847798-7847918 ( 59) GCTCTCTC 1 chr3R:9534701-9534821 ( 60) GCTCTCTC 1 chr3L:12804414-12804534 ( 72) GCTCTCTC 1 chrX:499273-499393 ( 95) GCTCTCTC 1 chrX:8894036-8894156 ( 107) TCTCTCCC 1 chr2R:9440998-9441118 ( 99) GCTCTCCC 1 chr3L:14221258-14221378 ( 105) GCTCTCCC 1 chr3L:881040-881160 ( 71) GCTCTCCC 1 chr2L:12974999-12975119 ( 113) GCTCTCCC 1 chr3R:23252221-23252341 ( 11) GCTCTCCC 1 chr2R:4270880-4271000 ( 28) GCTCTCCC 1 chr2L:527408-527528 ( 86) TCTCTCTG 1 chr2R:24631033-24631153 ( 61) GCTCTCTG 1 chr2R:17796184-17796304 ( 96) GCTCTCTG 1 chr2R:12474223-12474343 ( 16) GCTCTCTG 1 chrX:3081695-3081815 ( 79) GCTCTCTG 1 chr2L:483595-483715 ( 84) TCTCCCTC 1 chrX:15633505-15633625 ( 10) TCTCCCTC 1 chr3L:21225788-21225908 ( 96) TCTCCCTC 1 chr3R:12449633-12449753 ( 110) TCGCTCTC 1 chr2L:13331216-13331336 ( 81) TCGCTCTC 1 chr2R:19373235-19373355 ( 47) TCTCTTTC 1 chr2R:8722433-8722553 ( 84) TCTCTTTC 1 chrX:2297370-2297490 ( 77) GCTCCCTC 1 chr2R:19141956-19142076 ( 94) TCTCTTTC 1 chr2L:21141725-21141845 ( 21) GCTCCCTC 1 chr2R:13622892-13623012 ( 47) GCGCTCTC 1 chrX:7196098-7196218 ( 79) GCGCTCTC 1 chr3R:17557626-17557746 ( 1) TCTCTCCG 1 chr3L:22910393-22910513 ( 21) TCTCTCCG 1 chrX:17658828-17658948 ( 3) TCTCTCTT 1 chr2R:10444129-10444249 ( 98) TCTCTCTT 1 chr2L:20312096-20312216 ( 29) GCTCTCCG 1 chr3R:25208359-25208479 ( 35) GCTCTCTT 1 chr2L:11123316-11123436 ( 107) TCGCTCCC 1 chr3L:9401246-9401366 ( 74) TCGCTCCC 1 chrX:19712849-19712969 ( 79) TCTCTTCC 1 chr2R:17794247-17794367 ( 89) TCTCCCTG 1 chr3R:22698510-22698630 ( 107) GCTCTTCC 1 chr3R:2088401-2088521 ( 53) TCTCTTTG 1 chr2L:12015535-12015655 ( 8) TCTCCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTCTCTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2119 E= 1.0e-005 -1243 -1243 72 118 -1243 206 -1243 -1243 -1243 -1243 -115 175 -1243 206 -1243 -1243 -1243 -91 -1243 172 -1243 187 -1243 -106 -1243 9 -1243 149 -1243 167 -42 -228 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTCTCTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 1.0e-005 0.000000 0.000000 0.400000 0.600000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.109091 0.890909 0.000000 1.000000 0.000000 0.000000 0.000000 0.127273 0.000000 0.872727 0.000000 0.872727 0.000000 0.127273 0.000000 0.254545 0.000000 0.745455 0.000000 0.763636 0.181818 0.054545 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTCTCTC MEME-3 regular expression -------------------------------------------------------------------------------- [TG]CTCTC[TC]C -------------------------------------------------------------------------------- Time 19.78 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGCARC MEME-4 width = 8 sites = 15 llr = 146 E-value = 4.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGCARC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::63: pos.-specific C :a::a::a probability G a::a:17: matrix T :::::3:: bits 2.1 ***** * 1.9 ***** * 1.6 ***** * 1.4 ***** * Relative 1.2 ***** * Entropy 1.0 ***** ** (14.0 bits) 0.8 ***** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCAGC consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCARC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8870338-8870458 96 1.26e-05 TGCAGCAGGA GCAGCAGC AAGCCGCCGT chr3R:23257716-23257836 25 1.26e-05 TGTTTGTTTT GCAGCAGC AAAAAATCCG chrX:15483313-15483433 82 1.26e-05 agtcatagga gcagcagc agAGGACGCA chr3R:26229757-26229877 96 1.26e-05 agtagcacca gcagcagc TATAACATTG chrX:16913253-16913373 71 1.26e-05 Caccgcaacg gcagcagc aacaacaact chr3R:22626626-22626746 52 2.57e-05 TTTCGAGATT GCAGCAAC AGAAATGTTA chr2R:20329903-20330023 23 2.57e-05 AGCATCGATC GCAGCAAC ATGGAGAACA chr2R:4270880-4271000 57 2.57e-05 ttccgcaact gcagcaac tatagcaaca chr3L:27911776-27911896 95 2.57e-05 taccacaact gcagcaac tatagcaaca chr3L:25230065-25230185 41 3.89e-05 tagcactaat gcagctgc agccactaat chr3R:23252221-23252341 24 3.89e-05 CTCCCGTCGA GCAGCTGC TGCACTGCAT chr2R:10602977-10603097 53 3.89e-05 GCATATGCTA GCAGCTGC CGGTGTCCGC chrX:6599997-6600117 17 5.11e-05 CGAGAGAGAG GCAGCGGC GCCGGCAGAG chr3L:22910393-22910513 107 5.11e-05 GTCGAGGAGA GCAGCGGC GCACTC chr3R:15994330-15994450 85 6.48e-05 gacagcatta gcagctac aacaacagca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCARC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8870338-8870458 1.3e-05 95_[+4]_17 chr3R:23257716-23257836 1.3e-05 24_[+4]_88 chrX:15483313-15483433 1.3e-05 81_[+4]_31 chr3R:26229757-26229877 1.3e-05 95_[+4]_17 chrX:16913253-16913373 1.3e-05 70_[+4]_42 chr3R:22626626-22626746 2.6e-05 51_[+4]_61 chr2R:20329903-20330023 2.6e-05 22_[+4]_90 chr2R:4270880-4271000 2.6e-05 56_[+4]_56 chr3L:27911776-27911896 2.6e-05 94_[+4]_18 chr3L:25230065-25230185 3.9e-05 40_[+4]_72 chr3R:23252221-23252341 3.9e-05 23_[+4]_89 chr2R:10602977-10603097 3.9e-05 52_[+4]_60 chrX:6599997-6600117 5.1e-05 16_[+4]_96 chr3L:22910393-22910513 5.1e-05 106_[+4]_6 chr3R:15994330-15994450 6.5e-05 84_[+4]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCARC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGCARC width=8 seqs=15 chrX:8870338-8870458 ( 96) GCAGCAGC 1 chr3R:23257716-23257836 ( 25) GCAGCAGC 1 chrX:15483313-15483433 ( 82) GCAGCAGC 1 chr3R:26229757-26229877 ( 96) GCAGCAGC 1 chrX:16913253-16913373 ( 71) GCAGCAGC 1 chr3R:22626626-22626746 ( 52) GCAGCAAC 1 chr2R:20329903-20330023 ( 23) GCAGCAAC 1 chr2R:4270880-4271000 ( 57) GCAGCAAC 1 chr3L:27911776-27911896 ( 95) GCAGCAAC 1 chr3L:25230065-25230185 ( 41) GCAGCTGC 1 chr3R:23252221-23252341 ( 24) GCAGCTGC 1 chr2R:10602977-10603097 ( 53) GCAGCTGC 1 chrX:6599997-6600117 ( 17) GCAGCGGC 1 chr3L:22910393-22910513 ( 107) GCAGCGGC 1 chr3R:15994330-15994450 ( 85) GCAGCTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCARC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 4.8e+004 -1055 -1055 204 -1055 -1055 206 -1055 -1055 199 -1055 -1055 -1055 -1055 -1055 204 -1055 -1055 206 -1055 -1055 125 -1055 -86 1 40 -1055 146 -1055 -1055 206 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCARC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 4.8e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.133333 0.266667 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCARC MEME-4 regular expression -------------------------------------------------------------------------------- GCAGC[AT][GA]C -------------------------------------------------------------------------------- Time 25.75 secs. ******************************************************************************** ******************************************************************************** MOTIF CAAMAACA MEME-5 width = 8 sites = 10 llr = 105 E-value = 2.1e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAMAACA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :aa5aa:a pos.-specific C a::5::a: probability G :::::::: matrix T :::::::: bits 2.1 *** **** 1.9 *** **** 1.6 *** **** 1.4 *** **** Relative 1.2 *** **** Entropy 1.0 ******** (15.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAAAACA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAMAACA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10325360-10325480 35 1.40e-05 CAATATTTTG CAACAACA CAACGGGCTG chrX:2298785-2298905 78 1.40e-05 Gcaacaacta caacaaca acgacCCAAG chrX:16913253-16913373 99 1.40e-05 gcaacaacta caacaaca gcaacaaGGG chr2R:4270880-4271000 70 1.40e-05 gcaactatag caacaaca actacagttt chr3L:27911776-27911896 108 1.40e-05 gcaactatag caacaaca actac chr2R:17794247-17794367 67 2.88e-05 AAATTATTAG CAAAAACA TAAATACGTA chr2L:517615-517735 94 2.88e-05 TGGTGCGACC CAAAAACA CTTTTCGGTC chr2L:22145654-22145774 100 2.88e-05 GCGCCAATGT CAAAAACA AAGCAAACTT chr2R:13219260-13219380 29 2.88e-05 CACAGAGAGG CAAAAACA ATTGAGAGAG chr2R:8565941-8566061 104 2.88e-05 CTTATCTCGC CAAAAACA TTTGCGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAMAACA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10325360-10325480 1.4e-05 34_[+5]_78 chrX:2298785-2298905 1.4e-05 77_[+5]_35 chrX:16913253-16913373 1.4e-05 98_[+5]_14 chr2R:4270880-4271000 1.4e-05 69_[+5]_43 chr3L:27911776-27911896 1.4e-05 107_[+5]_5 chr2R:17794247-17794367 2.9e-05 66_[+5]_46 chr2L:517615-517735 2.9e-05 93_[+5]_19 chr2L:22145654-22145774 2.9e-05 99_[+5]_13 chr2R:13219260-13219380 2.9e-05 28_[+5]_84 chr2R:8565941-8566061 2.9e-05 103_[+5]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAMAACA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAMAACA width=8 seqs=10 chrX:10325360-10325480 ( 35) CAACAACA 1 chrX:2298785-2298905 ( 78) CAACAACA 1 chrX:16913253-16913373 ( 99) CAACAACA 1 chr2R:4270880-4271000 ( 70) CAACAACA 1 chr3L:27911776-27911896 ( 108) CAACAACA 1 chr2R:17794247-17794367 ( 67) CAAAAACA 1 chr2L:517615-517735 ( 94) CAAAAACA 1 chr2L:22145654-22145774 ( 100) CAAAAACA 1 chr2R:13219260-13219380 ( 29) CAAAAACA 1 chr2R:8565941-8566061 ( 104) CAAAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAMAACA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8977 E= 2.1e+005 -997 206 -997 -997 199 -997 -997 -997 199 -997 -997 -997 99 106 -997 -997 199 -997 -997 -997 199 -997 -997 -997 -997 206 -997 -997 199 -997 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAMAACA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.1e+005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAMAACA MEME-5 regular expression -------------------------------------------------------------------------------- CAA[AC]AACA -------------------------------------------------------------------------------- Time 31.69 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:2088401-2088521 2.14e-04 98_[+2(3.14e-05)]_14 chr3L:27911776-27911896 2.40e-04 94_[+4(2.57e-05)]_5_[+5(1.40e-05)]_\ 5 chr2L:21401194-21401314 6.37e-01 120 chr3R:23312029-23312149 8.86e-01 120 chr2L:19047175-19047295 8.75e-01 120 chr2R:4270880-4271000 1.63e-05 27_[+3(5.98e-05)]_21_[+4(2.57e-05)]_\ 5_[+5(1.40e-05)]_43 chrX:12684796-12684916 2.89e-01 120 chr2L:538931-539051 1.50e-01 120 chr3R:23058171-23058291 2.29e-01 120 chr3R:8090183-8090303 9.98e-01 120 chr3L:873323-873443 5.32e-01 120 chr3R:21099557-21099677 3.00e-01 120 chr3L:27089918-27090038 5.64e-01 120 chr2R:20269706-20269826 9.10e-01 120 chrX:18290819-18290939 1.19e-01 26_[+1(1.41e-05)]_[+1(1.41e-05)]_\ [+1(2.75e-05)]_70 chr2R:10422573-10422693 6.73e-01 120 chr2R:20276700-20276820 6.74e-02 120 chrX:3081695-3081815 5.70e-04 7_[+1(5.54e-05)]_36_[+2(4.94e-05)]_\ 19_[+3(9.15e-05)]_34 chrX:2255157-2255277 4.92e-03 89_[+2(1.64e-05)]_[+2(1.64e-05)]_\ [+2(1.64e-05)]_7 chr3L:19886588-19886708 4.29e-01 120 chr3R:27262705-27262825 4.11e-01 120 chr3L:21225788-21225908 4.30e-03 57_[+2(1.64e-05)]_55 chr3R:23266220-23266340 9.94e-01 120 chr2R:12692998-12693118 5.97e-01 120 chr3R:11605650-11605770 5.72e-01 120 chr2L:1185328-1185448 2.15e-01 120 chr3R:21574535-21574655 1.56e-01 120 chr4:525211-525331 9.47e-01 120 chr2R:20329903-20330023 2.85e-02 22_[+4(2.57e-05)]_90 chr2R:8565941-8566061 1.59e-02 103_[+5(2.88e-05)]_9 chrX:8870135-8870255 1.80e-01 84_[+1(4.08e-05)]_28 chrX:19712849-19712969 1.92e-01 120 chr3L:22368638-22368758 4.03e-01 120 chr2L:12015535-12015655 6.87e-02 95_[+2(9.56e-05)]_17 chr3L:3459673-3459793 3.59e-01 120 chrX:12679052-12679172 2.76e-02 120 chr3R:21096772-21096892 1.60e-02 90_[+1(8.17e-05)]_22 chr2R:17414691-17414811 4.40e-01 120 chr2L:13331216-13331336 1.12e-01 120 chrX:4204080-4204200 2.91e-03 48_[+3(1.64e-05)]_15_[+2(1.64e-05)]_\ 41 chr2L:831297-831417 9.62e-01 120 chrX:16913253-16913373 2.19e-03 70_[+4(1.26e-05)]_20_[+5(1.40e-05)]_\ 14 chrX:19164261-19164381 1.60e-01 120 chr3R:23255717-23255837 3.24e-01 120 chr3L:832044-832164 7.76e-01 120 chr2R:7664121-7664241 7.15e-01 120 chr3R:26229757-26229877 4.14e-02 95_[+4(1.26e-05)]_17 chr2L:12504942-12505062 1.82e-03 17_[+1(2.75e-05)]_95 chr3R:23260381-23260501 6.25e-01 120 chr2R:19325504-19325624 2.98e-02 35_[+1(1.41e-05)]_34_[+1(6.82e-05)]_\ 35 chr3R:12372052-12372172 2.41e-01 120 chr3L:3439897-3440017 8.71e-02 120 chr2R:12314050-12314170 4.62e-01 120 chr3R:23057219-23057339 5.59e-01 120 chr2L:545231-545351 8.27e-01 120 chr2R:4271828-4271948 5.45e-04 93_[+2(1.64e-05)]_19 chr3L:6943459-6943579 1.12e-02 109_[+2(9.56e-05)]_3 chrX:1468425-1468545 3.30e-01 120 chr3R:8090469-8090589 8.31e-02 40_[+2(8.00e-05)]_72 chrX:5710785-5710905 3.44e-01 120 chr3R:25292306-25292426 6.46e-01 120 chr2R:13219260-13219380 1.46e-02 28_[+5(2.88e-05)]_84 chr2L:19005533-19005653 2.22e-01 120 chr3R:23060531-23060651 5.41e-01 120 chr3R:23239167-23239287 2.64e-04 9_[+1(4.08e-05)]_45_[+2(9.56e-05)]_\ 50 chr3R:11984285-11984405 1.68e-01 120 chr2L:21103271-21103391 6.62e-01 120 chr2L:20312096-20312216 2.46e-01 120 chr2L:21141725-21141845 5.25e-02 120 chr3R:18450405-18450525 3.56e-01 120 chr2R:12634376-12634496 4.36e-01 120 chr2L:1667526-1667646 2.22e-01 120 chr3R:9357380-9357500 1.23e-01 120 chr2L:12483432-12483552 1.88e-01 120 chr3R:23255968-23256088 9.35e-01 120 chr3L:2571447-2571567 2.54e-01 120 chr2R:10602977-10603097 1.26e-03 52_[+4(3.89e-05)]_60 chr2R:21175208-21175328 1.09e-03 30_[+2(1.64e-05)]_[+2(1.64e-05)]_74 chrX:2341714-2341834 7.64e-01 120 chr2L:19127829-19127949 5.82e-01 120 chr3R:8094058-8094178 3.99e-01 120 chr2R:21216411-21216531 9.33e-01 120 chr2L:527408-527528 6.21e-02 85_[+3(7.63e-05)]_27 chrX:16835813-16835933 8.83e-01 120 chr3L:19034276-19034396 9.09e-01 120 chrX:21067659-21067779 8.32e-01 120 chr2R:20271851-20271971 3.20e-01 120 chrX:15633505-15633625 4.04e-03 14_[+2(1.64e-05)]_[+2(1.64e-05)]_90 chr2R:10851903-10852023 5.50e-01 120 chr3R:22626626-22626746 4.59e-04 51_[+4(2.57e-05)]_35_[+1(1.41e-05)]_\ 18 chr2R:6651971-6652091 9.58e-02 120 chrX:15483313-15483433 1.35e-03 21_[+1(6.82e-05)]_6_[+1(1.41e-05)]_\ 18_[+4(1.26e-05)]_12_[+4(1.26e-05)]_31 chr3R:23257716-23257836 3.34e-02 24_[+4(1.26e-05)]_88 chr3R:8346080-8346200 9.04e-01 120 chr3R:24219788-24219908 7.19e-01 120 chr3L:445907-446027 2.93e-01 13_[+1(4.08e-05)]_99 chrX:19665335-19665455 5.18e-02 120 chr2R:5773114-5773234 1.99e-03 62_[+3(4.62e-05)]_3_[+2(1.64e-05)]_\ [+2(1.64e-05)]_[+2(1.64e-05)]_23 chr2R:20273152-20273272 5.27e-01 120 chr3R:15994330-15994450 5.51e-03 41_[+5(1.40e-05)]_42_[+5(1.40e-05)]_\ 21 chr3L:20355343-20355463 6.24e-01 120 chr3R:23327836-23327956 4.21e-01 120 chr3R:9866100-9866220 2.49e-02 11_[+1(4.08e-05)]_75_[+1(1.41e-05)]_\ [+1(1.41e-05)]_10 chrX:10534335-10534455 2.94e-01 120 chrX:18864989-18865109 1.15e-02 7_[+1(1.41e-05)]_105 chrX:8894036-8894156 7.28e-03 74_[+2(4.94e-05)]_3_[+2(1.64e-05)]_\ 13_[+3(4.62e-05)]_6 chr3R:31572776-31572896 1.92e-01 120 chr3L:17668061-17668181 8.81e-04 47_[+3(1.64e-05)]_30_[+2(1.64e-05)]_\ 27 chr3R:23330689-23330809 3.66e-01 120 chrX:17710913-17711033 1.58e-01 45_[+1(6.82e-05)]_67 chr3R:23252221-23252341 4.62e-03 10_[+3(5.98e-05)]_5_[+4(3.89e-05)]_\ 89 chr3R:23324853-23324973 1.00e+00 120 chr2L:22145654-22145774 4.22e-04 85_[+1(6.82e-05)]_6_[+5(2.88e-05)]_\ 13 chr2R:12654181-12654301 4.34e-01 120 chr3R:12368240-12368360 2.26e-01 120 chr3L:3151116-3151236 1.98e-01 1_[+4(8.94e-05)]_111 chr3R:22698510-22698630 5.10e-02 120 chr3R:23326893-23327013 1.01e-01 120 chr3L:9401246-9401366 2.41e-02 10_[+1(2.75e-05)]_102 chr2R:12686722-12686842 1.53e-02 101_[+1(8.17e-05)]_11 chr3R:23312893-23313013 4.33e-01 120 chr2L:13095827-13095947 1.02e-01 120 chrX:5694865-5694985 8.29e-01 120 chr3R:8261844-8261964 3.59e-01 120 chrX:8870338-8870458 8.97e-02 95_[+4(1.26e-05)]_17 chr3L:768049-768169 9.81e-01 120 chrX:2298785-2298905 4.13e-03 77_[+5(1.40e-05)]_35 chr3L:3456041-3456161 8.69e-01 120 chrX:17651405-17651525 1.17e-01 17_[+1(2.75e-05)]_95 chr2L:517615-517735 2.53e-03 93_[+5(2.88e-05)]_19 chr3L:1577874-1577994 6.26e-02 120 chr2R:12518574-12518694 5.62e-02 120 chr2L:12974999-12975119 9.90e-04 90_[+1(2.75e-05)]_14_[+3(5.98e-05)] chr2R:21200916-21201036 6.02e-01 120 chr3L:22910393-22910513 1.06e-04 29_[+2(4.94e-05)]_69_[+4(5.11e-05)]_\ 6 chr3L:16807690-16807810 2.40e-01 84_[+1(6.82e-05)]_11_[+1(4.08e-05)]_\ 9 chrX:12546399-12546519 7.81e-03 2_[+2(8.00e-05)]_110 chr3R:19642188-19642308 3.67e-01 120 chr3R:23052000-23052120 7.56e-01 120 chr3L:881040-881160 3.65e-04 15_[+1(2.75e-05)]_17_[+2(8.00e-05)]_\ 22_[+3(5.98e-05)]_42 chr2R:17794247-17794367 2.59e-04 12_[+1(1.41e-05)]_[+1(1.41e-05)]_38_\ [+5(2.88e-05)]_46 chr3R:4307692-4307812 1.47e-03 108_[+2(6.50e-05)]_4 chr3L:6263853-6263973 2.92e-01 120 chrX:499273-499393 5.77e-03 94_[+3(3.14e-05)]_[+2(3.14e-05)]_10 chr3L:767824-767944 1.86e-01 120 chrX:3555217-3555337 4.19e-02 99_[+1(1.41e-05)]_[+1(1.41e-05)]_5 chr2L:16451184-16451304 1.19e-02 13_[+2(4.94e-05)]_99 chr3L:1196201-1196321 8.60e-02 22_[+1(1.41e-05)]_[+1(1.41e-05)]_6_\ [+1(2.75e-05)]_68 chr2L:19756515-19756635 4.56e-02 111_[+2(4.94e-05)]_1 chrX:11622706-11622826 1.81e-03 111_[+2(1.64e-05)]_1 chr2L:16731786-16731906 9.69e-01 120 chr2L:468213-468333 7.42e-01 120 chr3R:18447515-18447635 1.92e-05 84_[+3(1.64e-05)]_12_[+2(6.50e-05)]_\ 8 chr2R:12957785-12957905 4.45e-01 120 chr3L:25230065-25230185 7.52e-03 3_[+1(5.54e-05)]_29_[+4(3.89e-05)]_\ 72 chr2R:12743098-12743218 7.05e-01 120 chr3L:12804414-12804534 1.32e-03 71_[+3(3.14e-05)]_9_[+2(1.64e-05)]_\ 24 chr4:656352-656472 5.78e-01 120 chr3L:14221258-14221378 1.60e-02 17_[+2(3.14e-05)]_79_[+3(5.98e-05)]_\ 8 chrX:19498920-19499040 5.94e-01 120 chr2R:13344910-13345030 6.68e-01 120 chr3R:6407670-6407790 9.66e-02 8_[+1(9.56e-05)]_3_[+1(1.41e-05)]_\ 36_[+1(5.54e-05)]_49 chr3R:11980277-11980397 9.55e-01 120 chr2L:468005-468125 9.03e-01 120 chrX:3143366-3143486 4.65e-02 32_[+1(1.41e-05)]_2_[+1(8.17e-05)]_\ 70 chr2L:506575-506695 6.27e-01 120 chr2R:19141956-19142076 4.14e-05 18_[+1(2.75e-05)]_64_[+2(3.14e-05)]_\ 10_[+2(1.64e-05)]_4 chr2R:22242561-22242681 7.45e-01 120 chrX:11881887-11882007 2.84e-01 64_[+1(9.56e-05)]_48 chrX:7967191-7967311 1.31e-03 19_[+2(4.94e-05)]_10_[+3(1.64e-05)]_\ 75 chr3R:9341181-9341301 1.44e-02 120 chr2R:9440998-9441118 2.41e-02 98_[+3(5.98e-05)]_14 chr3R:9866299-9866419 3.66e-01 120 chr2R:10444129-10444249 3.34e-03 108_[+2(1.64e-05)]_4 chr2R:18401877-18401997 1.34e-01 105_[+1(9.56e-05)]_7 chrX:17658828-17658948 1.56e-04 13_[+2(3.14e-05)]_99 chrX:5518209-5518329 2.10e-01 6_[+1(4.08e-05)]_65_[+1(2.75e-05)]_\ 33 chrX:1619670-1619790 8.79e-02 120 chr2L:501841-501961 1.52e-02 [+1(2.75e-05)]_[+1(1.41e-05)]_104 chr3R:26004773-26004893 2.44e-01 120 chr3L:22948467-22948587 1.30e-01 27_[+1(2.75e-05)]_85 chrX:7695799-7695919 9.46e-01 120 chrX:12471482-12471602 8.23e-05 63_[+1(2.75e-05)]_3_[+2(1.64e-05)]_\ 38 chr3R:4433524-4433644 5.14e-02 85_[+1(9.56e-05)]_11_[+1(9.56e-05)]_\ 8 chr3R:19225735-19225855 1.96e-02 109_[+1(2.75e-05)]_3 chr3R:12477366-12477486 8.72e-01 120 chr3L:2585914-2586034 1.85e-03 89_[+2(3.14e-05)]_1_[+3(1.64e-05)]_\ 3_[+2(4.94e-05)]_3 chr3R:12720613-12720733 6.24e-01 120 chrX:7196098-7196218 2.08e-03 6_[+2(6.50e-05)]_36_[+2(1.64e-05)]_\ 4_[+2(8.00e-05)]_9_[+2(3.14e-05)]_33 chr3R:21582072-21582192 9.71e-01 120 chr2L:11123316-11123436 5.00e-01 120 chrX:11372869-11372989 9.21e-02 34_[+1(1.41e-05)]_8_[+1(1.41e-05)]_\ [+1(1.41e-05)]_54 chr2L:2194766-2194886 3.53e-02 120 chrX:2297370-2297490 2.07e-02 101_[+2(8.00e-05)]_11 chr2L:8542398-8542518 5.43e-01 120 chr3R:11982637-11982757 3.24e-02 67_[+1(5.54e-05)]_45 chr3R:9047386-9047506 6.33e-01 120 chr3R:15901347-15901467 4.88e-03 82_[+2(6.50e-05)]_18_[+1(2.75e-05)]_\ 4 chr3L:18993907-18994027 8.17e-01 120 chr3L:19079355-19079475 4.14e-01 120 chrX:19315672-19315792 1.07e-02 51_[+3(7.63e-05)]_61 chr3L:22909638-22909758 3.19e-01 120 chr2R:8722433-8722553 1.56e-03 61_[+2(3.14e-05)]_51 chr2R:21713937-21714057 6.91e-03 90_[+2(1.64e-05)]_22 chr3R:4807801-4807921 5.45e-02 38_[+1(1.41e-05)]_74 chr3R:9015091-9015211 9.95e-01 120 chrX:6599997-6600117 3.34e-03 7_[+1(1.41e-05)]_1_[+4(5.11e-05)]_\ 96 chr2R:16210461-16210581 1.43e-02 42_[+1(1.41e-05)]_7_[+1(4.08e-05)]_\ 55 chr2R:13991806-13991926 5.03e-04 15_[+2(3.14e-05)]_60_[+1(8.17e-05)]_\ 29 chr2L:486964-487084 1.51e-03 95_[+2(1.64e-05)]_6_[+2(1.64e-05)]_\ 3 chr3R:23332209-23332329 3.60e-01 120 chr3R:23346178-23346298 1.04e-04 3_[+4(7.74e-05)]_47_[+3(1.64e-05)]_\ 5_[+2(1.64e-05)]_41 chr2L:16448229-16448349 2.24e-01 120 chr3L:1098872-1098992 7.57e-05 6_[+1(9.56e-05)]_14_[+2(1.64e-05)]_\ [+2(1.64e-05)]_4_[+2(4.94e-05)]_64 chr2R:19373235-19373355 1.21e-02 45_[+2(4.94e-05)]_32_[+2(4.94e-05)]_\ 27 chr2L:19163663-19163783 4.69e-01 120 chrX:18634779-18634899 6.05e-01 120 chrX:10325360-10325480 2.08e-03 1_[+1(8.17e-05)]_25_[+5(1.40e-05)]_\ 14_[+5(5.85e-05)]_56 chrX:16089446-16089566 3.14e-02 [+1(1.41e-05)]_4_[+1(1.41e-05)]_8_\ [+1(5.54e-05)]_84 chr3R:5701208-5701328 1.70e-04 [+2(1.64e-05)]_[+2(1.64e-05)]_\ [+2(8.00e-05)]_6_[+2(1.64e-05)]_[+2(1.64e-05)]_[+2(1.64e-05)]_66 chr3L:14757649-14757769 4.61e-01 120 chr2R:16221198-16221318 1.07e-01 77_[+1(1.41e-05)]_[+1(2.75e-05)]_7_\ [+1(4.08e-05)]_12 chr2L:3545409-3545529 1.14e-01 120 chr3R:9534701-9534821 1.06e-03 59_[+3(3.14e-05)]_33_[+2(4.94e-05)]_\ 12 chr2R:22940868-22940988 9.61e-03 38_[+1(1.41e-05)]_74 chr2R:7458910-7459030 5.45e-02 7_[+2(6.50e-05)]_105 chrX:17871277-17871397 3.94e-03 72_[+1(9.56e-05)]_2_[+2(6.50e-05)]_\ 30 chrX:1388135-1388255 4.38e-03 43_[+3(7.63e-05)]_30_[+2(1.64e-05)]_\ [+2(1.64e-05)]_[+2(1.64e-05)]_[+2(1.64e-05)]_7 chrX:13277260-13277380 8.64e-04 78_[+3(7.63e-05)]_9_[+2(1.64e-05)]_\ [+2(1.64e-05)]_9 chr2R:10424100-10424220 9.98e-01 120 chrX:5886909-5887029 6.83e-02 11_[+1(2.75e-05)]_6_[+1(1.41e-05)]_\ 87 chrX:22855369-22855489 5.09e-02 120 chr2L:483595-483715 1.36e-01 120 chr3L:7847798-7847918 5.75e-03 24_[+3(4.62e-05)]_26_[+3(3.14e-05)]_\ 5_[+2(1.64e-05)]_41 chr3R:12449633-12449753 2.77e-01 120 chr2L:223156-223276 5.14e-02 120 chr3R:17557626-17557746 2.93e-03 18_[+2(1.64e-05)]_94 chr2L:19165411-19165531 3.60e-01 120 chr2R:13622892-13623012 8.16e-03 49_[+2(8.00e-05)]_63 chr2R:9413648-9413768 4.22e-01 120 chr2R:12474223-12474343 4.69e-03 15_[+3(9.15e-05)]_15_[+2(1.64e-05)]_\ 3_[+2(3.14e-05)]_63 chr3R:25208359-25208479 1.33e-03 64_[+2(4.94e-05)]_1_[+2(1.64e-05)]_\ [+2(8.00e-05)]_31 chr3R:4739029-4739149 1.18e-02 15_[+1(4.08e-05)]_7_[+1(5.54e-05)]_\ 82 chr3L:1031420-1031540 2.63e-01 120 chr3L:7156463-7156583 1.78e-03 6_[+2(1.64e-05)]_4_[+2(1.64e-05)]_\ 94 chr3L:9466064-9466184 8.18e-03 32_[+2(3.14e-05)]_16_[+3(3.14e-05)]_\ 56 chr2R:17796184-17796304 1.61e-03 32_[+2(3.14e-05)]_55_[+3(9.15e-05)]_\ 17 chr2R:24631033-24631153 1.13e-02 60_[+3(9.15e-05)]_52 chr3R:21651651-21651771 3.72e-02 120 chr2L:3124839-3124959 7.27e-02 [+1(4.08e-05)]_2_[+1(2.75e-05)]_102 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************