******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Stat92E.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:6410089-6410209 1.0000 120 chr4:1183635-1183755 1.0000 120 chr3L:16162771-16162891 1.0000 120 chr4:1224191-1224311 1.0000 120 chr2L:21574525-21574645 1.0000 120 chr3R:4235554-4235674 1.0000 120 chr3L:546636-546756 1.0000 120 chrX:6710607-6710727 1.0000 120 chrX:10800745-10800865 1.0000 120 chr3L:7814278-7814398 1.0000 120 chr2R:5683585-5683705 1.0000 120 chr2R:13018348-13018468 1.0000 120 chr3R:17897627-17897747 1.0000 120 chr2L:11062675-11062795 1.0000 120 chr3L:14540312-14540432 1.0000 120 chr2R:7014206-7014326 1.0000 120 chr2L:17377815-17377935 1.0000 120 chr4:305049-305169 1.0000 120 chr3L:7859502-7859622 1.0000 120 chr3L:11259616-11259736 1.0000 120 chr3R:19626637-19626757 1.0000 120 chr3R:29781540-29781660 1.0000 120 chrX:3730636-3730756 1.0000 120 chr2R:23724705-23724825 1.0000 120 chr3R:14650495-14650615 1.0000 120 chr2R:19164494-19164614 1.0000 120 chr3R:30800007-30800127 1.0000 120 chrX:12738621-12738741 1.0000 120 chrX:12753085-12753205 1.0000 120 chrX:3774860-3774980 1.0000 120 chr2L:9567940-9568060 1.0000 120 chr3L:6551552-6551672 1.0000 120 chr3R:23340154-23340274 1.0000 120 chrX:6861022-6861142 1.0000 120 chr3R:7106988-7107108 1.0000 120 chr3R:21620646-21620766 1.0000 120 chr4:57241-57361 1.0000 120 chr4:852031-852151 1.0000 120 chr3L:20193194-20193314 1.0000 120 chrX:7701088-7701208 1.0000 120 chrX:1263438-1263558 1.0000 120 chr2R:6116002-6116122 1.0000 120 chr3R:23336915-23337035 1.0000 120 chr2R:13007517-13007637 1.0000 120 chr2L:3720165-3720285 1.0000 120 chr3L:14758654-14758774 1.0000 120 chr3L:11257090-11257210 1.0000 120 chr2L:17449065-17449185 1.0000 120 chr2R:18352263-18352383 1.0000 120 chr2L:21260271-21260391 1.0000 120 chr3L:549716-549836 1.0000 120 chr4:248177-248297 1.0000 120 chr3L:9567646-9567766 1.0000 120 chr3R:5078385-5078505 1.0000 120 chr2L:18149661-18149781 1.0000 120 chr3L:130863-130983 1.0000 120 chr3R:8814002-8814122 1.0000 120 chr4:305248-305368 1.0000 120 chr4:788144-788264 1.0000 120 chr3R:4745615-4745735 1.0000 120 chr4:1026249-1026369 1.0000 120 chr3R:23787897-23788017 1.0000 120 chrX:2648538-2648658 1.0000 120 chr3R:18915811-18915931 1.0000 120 chr2R:10542785-10542905 1.0000 120 chrX:16104233-16104353 1.0000 120 chrX:17076919-17077039 1.0000 120 chrX:8059079-8059199 1.0000 120 chr2L:17382002-17382122 1.0000 120 chr2R:21380086-21380206 1.0000 120 chr2R:18316564-18316684 1.0000 120 chr3R:22782169-22782289 1.0000 120 chr2L:18144388-18144508 1.0000 120 chr3R:14710897-14711017 1.0000 120 chr3R:14019198-14019318 1.0000 120 chrX:522081-522201 1.0000 120 chr2L:12005150-12005270 1.0000 120 chrX:6706284-6706404 1.0000 120 chr3R:16249268-16249388 1.0000 120 chrX:6733591-6733711 1.0000 120 chr2R:19268547-19268667 1.0000 120 chrX:130810-130930 1.0000 120 chr2R:9446558-9446678 1.0000 120 chr3R:26103915-26104035 1.0000 120 chrX:16104539-16104659 1.0000 120 chr3R:14286034-14286154 1.0000 120 chr3R:20264417-20264537 1.0000 120 chr4:1318987-1319107 1.0000 120 chr4:136479-136599 1.0000 120 chr3L:10897668-10897788 1.0000 120 chr2R:6172349-6172469 1.0000 120 chr2R:6119956-6120076 1.0000 120 chr2L:16351943-16352063 1.0000 120 chr3R:24570894-24571014 1.0000 120 chr2R:20597454-20597574 1.0000 120 chr3R:13014793-13014913 1.0000 120 chrX:19578952-19579072 1.0000 120 chr2L:11475076-11475196 1.0000 120 chr3L:7815864-7815984 1.0000 120 chr2R:11603042-11603162 1.0000 120 chr2R:5109479-5109599 1.0000 120 chr2R:13047567-13047687 1.0000 120 chr2L:9495961-9496081 1.0000 120 chr2R:20597661-20597781 1.0000 120 chr3R:23729737-23729857 1.0000 120 chr2L:12507148-12507268 1.0000 120 chr3R:20265932-20266052 1.0000 120 chr3L:10665078-10665198 1.0000 120 chr3R:21582258-21582378 1.0000 120 chr3R:31725276-31725396 1.0000 120 chr4:625676-625796 1.0000 120 chr3R:21618891-21619011 1.0000 120 chr3R:25122449-25122569 1.0000 120 chr2L:14396253-14396373 1.0000 120 chr3L:10660444-10660564 1.0000 120 chr2L:13296766-13296886 1.0000 120 chrM:17162-17282 1.0000 120 chr4:415727-415847 1.0000 120 chr3R:31223525-31223645 1.0000 120 chr3R:14285746-14285866 1.0000 120 chrM:1004-1124 1.0000 120 chr3R:6413947-6414067 1.0000 120 chr3L:3380908-3381028 1.0000 120 chr3L:629059-629179 1.0000 120 chr2R:18529880-18530000 1.0000 120 chr3R:4745816-4745936 1.0000 120 chrX:9578822-9578942 1.0000 120 chr2L:16492127-16492247 1.0000 120 chrM:3976-4096 1.0000 120 chr2R:21474758-21474878 1.0000 120 chr3L:17668468-17668588 1.0000 120 chrX:13371514-13371634 1.0000 120 chr3R:14026797-14026917 1.0000 120 chr3R:11460765-11460885 1.0000 120 chrX:16424289-16424409 1.0000 120 chr2L:16530961-16531081 1.0000 120 chr2L:23512802-23512922 1.0000 120 chr2R:1513843-1513963 1.0000 120 chr2L:5207530-5207650 1.0000 120 chr2R:18800851-18800971 1.0000 120 chr2L:6724369-6724489 1.0000 120 chr2R:18357047-18357167 1.0000 120 chr3R:17706315-17706435 1.0000 120 chr3L:8441814-8441934 1.0000 120 chr2R:10734643-10734763 1.0000 120 chr2R:11358771-11358891 1.0000 120 chr3L:1349874-1349994 1.0000 120 chr2R:13823890-13824010 1.0000 120 chr2R:10102041-10102161 1.0000 120 chr2L:12546131-12546251 1.0000 120 chr3L:2636087-2636207 1.0000 120 chr4:960331-960451 1.0000 120 chrX:15312729-15312849 1.0000 120 chr3L:17994918-17995038 1.0000 120 chrX:10802309-10802429 1.0000 120 chr2L:19157227-19157347 1.0000 120 chr2L:2197827-2197947 1.0000 120 chr2L:7976781-7976901 1.0000 120 chr2L:19791219-19791339 1.0000 120 chrX:21281581-21281701 1.0000 120 chrM:3285-3405 1.0000 120 chr2L:8100542-8100662 1.0000 120 chr3R:9352767-9352887 1.0000 120 chr3L:18002962-18003082 1.0000 120 chr2L:12506833-12506953 1.0000 120 chr4:44725-44845 1.0000 120 chrM:518-638 1.0000 120 chr4:557319-557439 1.0000 120 chr2R:14486900-14487020 1.0000 120 chr2L:11806498-11806618 1.0000 120 chr3R:4739104-4739224 1.0000 120 chr3L:14674158-14674278 1.0000 120 chr2R:23746257-23746377 1.0000 120 chr3L:11561964-11562084 1.0000 120 chr4:570813-570933 1.0000 120 chr2L:2038102-2038222 1.0000 120 chr3R:15293309-15293429 1.0000 120 chrX:11714383-11714503 1.0000 120 chr3L:17995173-17995293 1.0000 120 chr4:1196992-1197112 1.0000 120 chr2L:5209600-5209720 1.0000 120 chr3R:20254181-20254301 1.0000 120 chr2R:22561520-22561640 1.0000 120 chrX:20159126-20159246 1.0000 120 chrM:2369-2489 1.0000 120 chr3L:16377840-16377960 1.0000 120 chr3L:5655627-5655747 1.0000 120 chr3L:17967611-17967731 1.0000 120 chr3R:28889421-28889541 1.0000 120 chr2R:9712666-9712786 1.0000 120 chr4:63443-63563 1.0000 120 chr2R:18531453-18531573 1.0000 120 chr3L:21013667-21013787 1.0000 120 chr3L:11285803-11285923 1.0000 120 chrX:22433038-22433158 1.0000 120 chr2R:11198697-11198817 1.0000 120 chr3L:16052881-16053001 1.0000 120 chrM:12825-12945 1.0000 120 chr3R:14052644-14052764 1.0000 120 chr3L:16166057-16166177 1.0000 120 chr3R:31059534-31059654 1.0000 120 chr3R:30805910-30806030 1.0000 120 chrX:8412466-8412586 1.0000 120 chr2R:17269466-17269586 1.0000 120 chr3R:8357752-8357872 1.0000 120 chr4:314065-314185 1.0000 120 chrM:9785-9905 1.0000 120 chrM:6072-6192 1.0000 120 chr2R:19229823-19229943 1.0000 120 chrM:4487-4607 1.0000 120 chr2L:9176545-9176665 1.0000 120 chr4:1031190-1031310 1.0000 120 chr3R:30806110-30806230 1.0000 120 chr3R:4232786-4232906 1.0000 120 chr3R:4232582-4232702 1.0000 120 chr3L:16160049-16160169 1.0000 120 chrM:12455-12575 1.0000 120 chr3R:21630655-21630775 1.0000 120 chr2R:11182781-11182901 1.0000 120 chr2L:16520294-16520414 1.0000 120 chr3R:16209449-16209569 1.0000 120 chr3R:14057327-14057447 1.0000 120 chrM:10008-10128 1.0000 120 chr3R:9940858-9940978 1.0000 120 chrM:4708-4828 1.0000 120 chr3L:8704944-8705064 1.0000 120 chrM:6968-7088 1.0000 120 chrX:2042372-2042492 1.0000 120 chrM:286-406 1.0000 120 chrM:4910-5030 1.0000 120 chrX:19683077-19683197 1.0000 120 chrM:11432-11552 1.0000 120 chr4:670894-671014 1.0000 120 chr2R:10430007-10430127 1.0000 120 chr2L:247073-247193 1.0000 120 chrX:3378756-3378876 1.0000 120 chrX:12665057-12665177 1.0000 120 chrM:11224-11344 1.0000 120 chr2L:9176948-9177068 1.0000 120 chr4:571015-571135 1.0000 120 chr4:210030-210150 1.0000 120 chr2R:23617844-23617964 1.0000 120 chrM:14135-14255 1.0000 120 chrX:2294922-2295042 1.0000 120 chr2L:5980382-5980502 1.0000 120 chrM:13216-13336 1.0000 120 chr2L:16533639-16533759 1.0000 120 chr2L:6723002-6723122 1.0000 120 chr3L:16955603-16955723 1.0000 120 chr3L:21009169-21009289 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Stat92E/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Stat92E.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.304 C 0.197 G 0.193 T 0.305 Background letter frequencies (from file dataset with add-one prior applied): A 0.304 C 0.197 G 0.193 T 0.305 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ACACACAC MEME-1 width = 8 sites = 44 llr = 395 E-value = 5.8e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACACAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 8:7:a:9: pos.-specific C :a1a:9:9 probability G 2:1:::11 matrix T ::1::::: bits 2.4 * * 2.1 * * 1.9 * * * 1.7 * *** * Relative 1.4 * *** * Entropy 1.2 * ***** (13.0 bits) 0.9 ** ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACACACAC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3378756-3378876 22 1.29e-05 GTacacacac acacacac atacaTGACT chrX:19683077-19683197 83 1.29e-05 GCGCTCTCTC ACACACAC AAGAGCACCT chr3R:30806110-30806230 67 1.29e-05 tggcttacac acacacac actcgcacac chr3R:30805910-30806030 14 1.29e-05 GTTCTCCCCC ACACACAC ACACTCGCAC chr3L:16052881-16053001 77 1.29e-05 acgcacgcgc acacacac gcaAAGAAAA chr2R:9712666-9712786 65 1.29e-05 cctctcacat acacacac GCTCGCGTGT chr3L:16377840-16377960 65 1.29e-05 ccccacacag acacacac gcacacTCGT chr2R:22561520-22561640 18 1.29e-05 cacacaacac acacacac acacatacgc chr2L:2038102-2038222 71 1.29e-05 TTACAAGCGc acacacac aaacacacac chr2R:23746257-23746377 25 1.29e-05 AAACCGATTG ACACACAC GCGATACAGA chr2L:19791219-19791339 107 1.29e-05 AGAGAGGGAA ACACACAC TCAGCT chr2L:7976781-7976901 36 1.29e-05 ggacgcacac acacacac acgcgcacgc chr3L:2636087-2636207 59 1.29e-05 caagcgcggc acacacac gcacacaggg chr3L:1349874-1349994 103 1.29e-05 ACGAACTCAC ACACACAC GCGTTCGATG chr3L:8441814-8441934 76 1.29e-05 AAAAAATTgc acacacac tggcgcaacc chr3R:25122449-25122569 24 1.29e-05 ACCAACTGAA ACACACAC ACTTAGACTT chrX:19578952-19579072 77 1.29e-05 GCAGACAAAT ACACACAC ATTCGTATGG chr2R:5683585-5683705 65 1.29e-05 GAACAAAGGc acacacac acacacacac chr3R:16209449-16209569 29 2.10e-05 TGAGGTCTCA GCACACAC Agagaccgga chrX:8412466-8412586 10 2.10e-05 CTTACTCAC GCACACAC TTGTGCGCTT chr3L:11561964-11562084 92 2.10e-05 cggcacgcac gcacacac gcacgcacgc chrX:2648538-2648658 1 2.10e-05 . gcacacac GTGTATTGTA chr2R:18531453-18531573 72 2.92e-05 ATCATTCACC ACACACGC CCCGACCATG chr3R:28889421-28889541 24 4.21e-05 TTTCCAATGC ACTCACAC AGAGCCACAA chrX:10802309-10802429 19 4.21e-05 CCTCTGTCCC ACTCACAC TCATTAGGCA chr3R:14057327-14057447 68 5.86e-05 AAAATACGTT ACGCACAC TAGTGGCGAA chr3L:17995173-17995293 85 5.86e-05 CACTGCTCAC ACGCACAC TAGTGCGAAC chr3R:4739104-4739224 85 5.86e-05 CAAGAAAAAC ACCCACAC GTACATTTAT chrX:130810-130930 82 5.86e-05 ACCCTTATCT ACCCACAC CAGCAGTTTT chr2R:21474758-21474878 87 6.38e-05 CAATAAAACA GCACACGC ACATTACAGC chr2L:6723002-6723122 67 8.46e-05 GCCGCCCGCT ACACACAG AACGGCAGCA chr3R:11460765-11460885 83 8.46e-05 AATCAGATAA ACACACAG CGAAAAATGT chr2L:9495961-9496081 51 8.46e-05 CTCCTGTCCC GCTCACAC TTTCCGCCTG chr2R:23724705-23724825 90 8.46e-05 AGACAAACAG ACACACAG AGCTCATAAT chr2L:11062675-11062795 46 8.46e-05 AGTTAAACAA GCTCACAC CTCACCCACT chrX:12665057-12665177 113 9.51e-05 TTGCTATCTC GCCCACAC chr3L:3380908-3381028 81 1.03e-04 GCACTTTCAA CCACACAC TTTTCGAAAA chr2R:19229823-19229943 63 1.12e-04 AGCTCGACTC ACTCACGC GGCATTTGTA chr3R:23787897-23788017 51 1.12e-04 ACTTAACTCC ACTCACGC AGGGGTTCTG chr3L:11285803-11285923 109 1.51e-04 GGCACTGTGG ACacatac atac chrX:8059079-8059199 41 1.51e-04 CAACAATTGA ACACAAAC GAGAGCGAAT chr3R:14650495-14650615 94 1.51e-04 TTACACGTAC ACACATAC ATACATATGT chr3R:19626637-19626757 89 1.51e-04 AGTATCTGAC ACACAAAC GAATTCGTTG chr3L:8704944-8705064 98 2.28e-04 CCTTATCGCC GCGCACGC CGCTCGCAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3378756-3378876 1.3e-05 21_[+1]_91 chrX:19683077-19683197 1.3e-05 82_[+1]_30 chr3R:30806110-30806230 1.3e-05 66_[+1]_46 chr3R:30805910-30806030 1.3e-05 13_[+1]_99 chr3L:16052881-16053001 1.3e-05 76_[+1]_36 chr2R:9712666-9712786 1.3e-05 64_[+1]_48 chr3L:16377840-16377960 1.3e-05 64_[+1]_48 chr2R:22561520-22561640 1.3e-05 17_[+1]_95 chr2L:2038102-2038222 1.3e-05 70_[+1]_42 chr2R:23746257-23746377 1.3e-05 24_[+1]_88 chr2L:19791219-19791339 1.3e-05 106_[+1]_6 chr2L:7976781-7976901 1.3e-05 35_[+1]_77 chr3L:2636087-2636207 1.3e-05 58_[+1]_54 chr3L:1349874-1349994 1.3e-05 102_[+1]_10 chr3L:8441814-8441934 1.3e-05 75_[+1]_37 chr3R:25122449-25122569 1.3e-05 23_[+1]_89 chrX:19578952-19579072 1.3e-05 76_[+1]_36 chr2R:5683585-5683705 1.3e-05 64_[+1]_48 chr3R:16209449-16209569 2.1e-05 28_[+1]_84 chrX:8412466-8412586 2.1e-05 9_[+1]_103 chr3L:11561964-11562084 2.1e-05 91_[+1]_21 chrX:2648538-2648658 2.1e-05 [+1]_112 chr2R:18531453-18531573 2.9e-05 71_[+1]_41 chr3R:28889421-28889541 4.2e-05 23_[+1]_89 chrX:10802309-10802429 4.2e-05 18_[+1]_94 chr3R:14057327-14057447 5.9e-05 67_[+1]_45 chr3L:17995173-17995293 5.9e-05 84_[+1]_28 chr3R:4739104-4739224 5.9e-05 84_[+1]_28 chrX:130810-130930 5.9e-05 81_[+1]_31 chr2R:21474758-21474878 6.4e-05 86_[+1]_26 chr2L:6723002-6723122 8.5e-05 66_[+1]_46 chr3R:11460765-11460885 8.5e-05 82_[+1]_30 chr2L:9495961-9496081 8.5e-05 50_[+1]_62 chr2R:23724705-23724825 8.5e-05 89_[+1]_23 chr2L:11062675-11062795 8.5e-05 45_[+1]_67 chrX:12665057-12665177 9.5e-05 112_[+1] chr3L:3380908-3381028 0.0001 80_[+1]_32 chr2R:19229823-19229943 0.00011 62_[+1]_50 chr3R:23787897-23788017 0.00011 50_[+1]_62 chr3L:11285803-11285923 0.00015 108_[+1]_4 chrX:8059079-8059199 0.00015 40_[+1]_72 chr3R:14650495-14650615 0.00015 93_[+1]_19 chr3R:19626637-19626757 0.00015 88_[+1]_24 chr3L:8704944-8705064 0.00023 97_[+1]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACACAC width=8 seqs=44 chrX:3378756-3378876 ( 22) ACACACAC 1 chrX:19683077-19683197 ( 83) ACACACAC 1 chr3R:30806110-30806230 ( 67) ACACACAC 1 chr3R:30805910-30806030 ( 14) ACACACAC 1 chr3L:16052881-16053001 ( 77) ACACACAC 1 chr2R:9712666-9712786 ( 65) ACACACAC 1 chr3L:16377840-16377960 ( 65) ACACACAC 1 chr2R:22561520-22561640 ( 18) ACACACAC 1 chr2L:2038102-2038222 ( 71) ACACACAC 1 chr2R:23746257-23746377 ( 25) ACACACAC 1 chr2L:19791219-19791339 ( 107) ACACACAC 1 chr2L:7976781-7976901 ( 36) ACACACAC 1 chr3L:2636087-2636207 ( 59) ACACACAC 1 chr3L:1349874-1349994 ( 103) ACACACAC 1 chr3L:8441814-8441934 ( 76) ACACACAC 1 chr3R:25122449-25122569 ( 24) ACACACAC 1 chrX:19578952-19579072 ( 77) ACACACAC 1 chr2R:5683585-5683705 ( 65) ACACACAC 1 chr3R:16209449-16209569 ( 29) GCACACAC 1 chrX:8412466-8412586 ( 10) GCACACAC 1 chr3L:11561964-11562084 ( 92) GCACACAC 1 chrX:2648538-2648658 ( 1) GCACACAC 1 chr2R:18531453-18531573 ( 72) ACACACGC 1 chr3R:28889421-28889541 ( 24) ACTCACAC 1 chrX:10802309-10802429 ( 19) ACTCACAC 1 chr3R:14057327-14057447 ( 68) ACGCACAC 1 chr3L:17995173-17995293 ( 85) ACGCACAC 1 chr3R:4739104-4739224 ( 85) ACCCACAC 1 chrX:130810-130930 ( 82) ACCCACAC 1 chr2R:21474758-21474878 ( 87) GCACACGC 1 chr2L:6723002-6723122 ( 67) ACACACAG 1 chr3R:11460765-11460885 ( 83) ACACACAG 1 chr2L:9495961-9496081 ( 51) GCTCACAC 1 chr2R:23724705-23724825 ( 90) ACACACAG 1 chr2L:11062675-11062795 ( 46) GCTCACAC 1 chrX:12665057-12665177 ( 113) GCCCACAC 1 chr3L:3380908-3381028 ( 81) CCACACAC 1 chr2R:19229823-19229943 ( 63) ACTCACGC 1 chr3R:23787897-23788017 ( 51) ACTCACGC 1 chr3L:11285803-11285923 ( 109) ACACATAC 1 chrX:8059079-8059199 ( 41) ACACAAAC 1 chr3R:14650495-14650615 ( 94) ACACATAC 1 chr3R:19626637-19626757 ( 89) ACACAAAC 1 chr3L:8704944-8705064 ( 98) GCGCACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3519 E= 5.8e-015 134 -311 8 -1210 -1210 234 -1210 -1210 126 -153 -150 -116 -1210 234 -1210 -1210 172 -1210 -1210 -1210 -274 221 -1210 -275 154 -1210 -77 -1210 -1210 224 -150 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 5.8e-015 0.772727 0.022727 0.204545 0.000000 0.000000 1.000000 0.000000 0.000000 0.727273 0.068182 0.068182 0.136364 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.045455 0.909091 0.000000 0.045455 0.886364 0.000000 0.113636 0.000000 0.000000 0.931818 0.068182 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-1 regular expression -------------------------------------------------------------------------------- [AG]CACACAC -------------------------------------------------------------------------------- Time 7.52 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTG MEME-2 width = 8 sites = 30 llr = 280 E-value = 5.9e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::1:::1: pos.-specific C 2:2:::3: probability G :a:a:a:a matrix T 8:7:a:7: bits 2.4 * * * * 2.1 * * * * 1.9 * * * * 1.7 * * * * Relative 1.4 * *** * Entropy 1.2 ** *** * (13.5 bits) 0.9 ** *** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10430007-10430127 11 1.20e-05 cttgtttgtg tgtgtgtg GACAGTGACT chr3R:21630655-21630775 83 1.20e-05 CCACGGTGTG TGTGTGTG TTGGAGGGGG chr2L:9176545-9176665 108 1.20e-05 TGTGCGTGCG TGTGTGTG AGTGC chr3R:8357752-8357872 14 1.20e-05 CACTCGAgtg tgtgtgtg tgtttgtgcg chrX:8412466-8412586 44 1.20e-05 CTTACGGTTC TGTGTGTG CGTGTATGTA chr3R:30805910-30806030 99 1.20e-05 GTTGCATTTG TGTGTGTG CTTCGCATTT chrX:15312729-15312849 81 1.20e-05 tgtgtatgCG TGTGTGTG TGGAGGAGCG chr4:960331-960451 29 1.20e-05 cagacaactg tgtgtgtg cacacgtatc chr3R:21618891-21619011 71 1.20e-05 AGCGCGCgtg tgtgtgtg tatgtgtgtg chr4:1318987-1319107 76 1.20e-05 tccccttaaa tgtgtgtg aggtggatgg chr3R:21620646-21620766 35 1.20e-05 ATTGGGCCCA TGTGTGTG TTTACAGTTT chr2R:13018348-13018468 24 1.20e-05 TGATTGAGTG TGTGTGTG TGTGCTCTGC chr3R:28889421-28889541 102 1.98e-05 tgggtgtgaa tgtgtgcg tgtgcgtgCC chr3L:16377840-16377960 94 1.98e-05 TGCTGCTGTT TGTGTGCG AGGGCATTTG chr3R:17897627-17897747 112 1.98e-05 TTCACATTAg tgtgtgcg t chr2L:16530961-16531081 55 2.75e-05 GTGTTTTATC CGTGTGTG TTTTTTTTTT chr2L:6723002-6723122 10 3.53e-05 CCACGCGTG TGCGtgtg taggtgtatg chr3R:20254181-20254301 107 3.53e-05 AATTAATATG TGCGTGTG TATGTA chr2L:2197827-2197947 106 4.03e-05 GAACCTTTTC CGTGTGCG CATGAAC chrX:130810-130930 12 4.03e-05 ATTGCGCTTA CGTGTGCG TTGTCCATGA chr2R:11198697-11198817 58 4.53e-05 agtgagtaag tgcgtgcg agtgagcaag chrX:13371514-13371634 68 4.53e-05 TTTATCGTTC TGCGTGCG TTTCCCTAAT chr2R:10734643-10734763 18 5.73e-05 TAGCCCCCGC TGAGTGTG GCGCGTGTTT chr3R:14710897-14711017 113 5.73e-05 ACTAATTTTG TGAGTGTG chr2R:9712666-9712786 76 6.23e-05 cacacacGCT CGCGTGTG GAGACCGTGA chr3L:16052881-16053001 3 8.20e-05 AT TGTGTGAG TGAGCGGAGA chr4:557319-557439 93 8.20e-05 ATGTAGAAAA TGTGTGAG TATATAGGTG chr3R:14052644-14052764 8 9.29e-05 CGCCAAG CGAGTGTG GATCGCATtc chr3L:21009169-21009289 58 1.01e-04 TTTCTAAGAA TGTGCGTG AGAATTTCAC chr2L:2038102-2038222 22 1.06e-04 GCGGCGGCAG CGAGTGCG AGCGGGACGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10430007-10430127 1.2e-05 10_[+2]_102 chr3R:21630655-21630775 1.2e-05 82_[+2]_30 chr2L:9176545-9176665 1.2e-05 107_[+2]_5 chr3R:8357752-8357872 1.2e-05 13_[+2]_99 chrX:8412466-8412586 1.2e-05 43_[+2]_69 chr3R:30805910-30806030 1.2e-05 98_[+2]_14 chrX:15312729-15312849 1.2e-05 80_[+2]_32 chr4:960331-960451 1.2e-05 28_[+2]_84 chr3R:21618891-21619011 1.2e-05 70_[+2]_42 chr4:1318987-1319107 1.2e-05 75_[+2]_37 chr3R:21620646-21620766 1.2e-05 34_[+2]_78 chr2R:13018348-13018468 1.2e-05 23_[+2]_89 chr3R:28889421-28889541 2e-05 101_[+2]_11 chr3L:16377840-16377960 2e-05 93_[+2]_19 chr3R:17897627-17897747 2e-05 111_[+2]_1 chr2L:16530961-16531081 2.8e-05 54_[+2]_58 chr2L:6723002-6723122 3.5e-05 9_[+2]_103 chr3R:20254181-20254301 3.5e-05 106_[+2]_6 chr2L:2197827-2197947 4e-05 105_[+2]_7 chrX:130810-130930 4e-05 11_[+2]_101 chr2R:11198697-11198817 4.5e-05 57_[+2]_55 chrX:13371514-13371634 4.5e-05 67_[+2]_45 chr2R:10734643-10734763 5.7e-05 17_[+2]_95 chr3R:14710897-14711017 5.7e-05 112_[+2] chr2R:9712666-9712786 6.2e-05 75_[+2]_37 chr3L:16052881-16053001 8.2e-05 2_[+2]_110 chr4:557319-557439 8.2e-05 92_[+2]_20 chr3R:14052644-14052764 9.3e-05 7_[+2]_105 chr3L:21009169-21009289 0.0001 57_[+2]_55 chr2L:2038102-2038222 0.00011 21_[+2]_91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTG width=8 seqs=30 chr2R:10430007-10430127 ( 11) TGTGTGTG 1 chr3R:21630655-21630775 ( 83) TGTGTGTG 1 chr2L:9176545-9176665 ( 108) TGTGTGTG 1 chr3R:8357752-8357872 ( 14) TGTGTGTG 1 chrX:8412466-8412586 ( 44) TGTGTGTG 1 chr3R:30805910-30806030 ( 99) TGTGTGTG 1 chrX:15312729-15312849 ( 81) TGTGTGTG 1 chr4:960331-960451 ( 29) TGTGTGTG 1 chr3R:21618891-21619011 ( 71) TGTGTGTG 1 chr4:1318987-1319107 ( 76) TGTGTGTG 1 chr3R:21620646-21620766 ( 35) TGTGTGTG 1 chr2R:13018348-13018468 ( 24) TGTGTGTG 1 chr3R:28889421-28889541 ( 102) TGTGTGCG 1 chr3L:16377840-16377960 ( 94) TGTGTGCG 1 chr3R:17897627-17897747 ( 112) TGTGTGCG 1 chr2L:16530961-16531081 ( 55) CGTGTGTG 1 chr2L:6723002-6723122 ( 10) TGCGTGTG 1 chr3R:20254181-20254301 ( 107) TGCGTGTG 1 chr2L:2197827-2197947 ( 106) CGTGTGCG 1 chrX:130810-130930 ( 12) CGTGTGCG 1 chr2R:11198697-11198817 ( 58) TGCGTGCG 1 chrX:13371514-13371634 ( 68) TGCGTGCG 1 chr2R:10734643-10734763 ( 18) TGAGTGTG 1 chr3R:14710897-14711017 ( 113) TGAGTGTG 1 chr2R:9712666-9712786 ( 76) CGCGTGTG 1 chr3L:16052881-16053001 ( 3) TGTGTGAG 1 chr4:557319-557439 ( 93) TGTGTGAG 1 chr3R:14052644-14052764 ( 8) CGAGTGTG 1 chr3L:21009169-21009289 ( 58) TGTGCGTG 1 chr2L:2038102-2038222 ( 22) CGAGTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 5.9e-006 -1155 2 -1155 139 -1155 -1155 237 -1155 -119 -24 -1155 120 -1155 -1155 237 -1155 -1155 -256 -1155 166 -1155 -1155 237 -1155 -219 44 -1155 113 -1155 -1155 237 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 5.9e-006 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 1.000000 0.000000 0.133333 0.166667 0.000000 0.700000 0.000000 0.000000 1.000000 0.000000 0.000000 0.033333 0.000000 0.966667 0.000000 0.000000 1.000000 0.000000 0.066667 0.266667 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-2 regular expression -------------------------------------------------------------------------------- [TC]GTGTG[TC]G -------------------------------------------------------------------------------- Time 13.77 secs. ******************************************************************************** ******************************************************************************** MOTIF GCWGCRGH MEME-3 width = 8 sites = 39 llr = 330 E-value = 8.1e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCWGCRGH MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::5::4:3 pos.-specific C :8::a1:5 probability G a21a:4a: matrix T ::4::1:3 bits 2.4 * ** 2.1 * ** * 1.9 * ** * 1.7 ** ** * Relative 1.4 ** ** * Entropy 1.2 ** ** * (12.2 bits) 0.9 ** ** * 0.7 ** ** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCAGC consensus GT G A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCRGH MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:10665078-10665198 67 3.22e-06 CCGCAAAAAG GCAGCGGC GTCGACGTCA chr2L:16520294-16520414 16 6.46e-06 AGAGTAAAAA GCTGCGGC CTGAAGAGAA chr3R:16209449-16209569 108 1.15e-05 CAAGCAGCAA GCAGCAGC CAGCG chr2R:22561520-22561640 52 1.15e-05 TGCAACTGTT GCAGCAGC CAAAACAACA chrX:9578822-9578942 20 1.15e-05 AACCGGCGTC GCAGCAGC ATTAGCAATA chr3L:10660444-10660564 63 1.15e-05 TCCTGCTCGA GCAGCAGC ACATGTAAAC chrX:8059079-8059199 21 1.15e-05 CCAGCAAAGT GCAGCAGC AACAACAATT chr3L:21013667-21013787 51 1.66e-05 GAAAAGAGGA GCTGCAGC AGAGACATGA chr2R:9712666-9712786 19 1.66e-05 CGTAAAATAA GCTGCAGc acaacgcaca chr3R:23787897-23788017 112 2.66e-05 TTGCTTGACC GCAGCGGT A chr3R:5078385-5078505 40 2.66e-05 GCGGTCAAAA GCAGCGGA AGTGCTGAGC chr2L:5980382-5980502 14 3.66e-05 TAATCAGCCG GCTGCGGA CAATGCAAAT chrX:17076919-17077039 19 3.66e-05 TCGTTCATAC GCTGCGGT TTTCTAGCAT chr2R:7014206-7014326 87 3.66e-05 AAACGATACA GCTGCGGT CAAAATGTTA chr4:248177-248297 48 4.31e-05 ttggcactat gcagccgc cacttttttg chr2R:18352263-18352383 103 4.31e-05 AAAATTTTAG GGAGCGGC ATATTATAAT chr3L:21009169-21009289 19 6.73e-05 TTTTGCTATC GCAGCAGA TCTTTTCTTT chr2R:17269466-17269586 43 6.73e-05 ACAGGCGACA GCTGCCGC ACATTTTGGA chrX:8412466-8412586 112 6.73e-05 AGATTTTTTA GGTGCGGC T chr2L:2038102-2038222 12 6.73e-05 CAGCGGTAGA GCGGCGGC AGCGAGTGCG chr3L:2636087-2636207 18 6.73e-05 ATCCAACATA GCAGCAGA AAAAacacac chr4:415727-415847 113 6.73e-05 AGAAGGAGTT GCGGCGGC chr3L:8441814-8441934 11 8.30e-05 CGAAAGTCTT GCTGCAGT TTTATCGATT chr2R:13047567-13047687 46 8.30e-05 AGAAATCTCA GCTGCAGA TTTCAACTTA chr3L:7815864-7815984 72 8.30e-05 AAAAGCTTCG GCTGCAGA GCTTTTCAAC chr2R:6119956-6120076 104 8.30e-05 TTCGCCTAGA GCTGCAGT GCAACCGAG chr3L:546636-546756 107 8.30e-05 TTACTCGCCA GCTGCAGA ACGAAA chrX:20159126-20159246 65 9.62e-05 CGCTCGCACT GGTGCAGC CGGCTGAATA chr4:1318987-1319107 29 1.01e-04 attagtgact gcagctgc attagtgtgg chr3R:30805910-30806030 32 1.26e-04 ACACTCGCAC GCAGCCGT ACTGATTTAT chr2L:7976781-7976901 101 1.26e-04 AGACAGAGAC GGAGCGGA AAGCACGACA chrX:15312729-15312849 93 1.26e-04 TGTGTGTGGA GGAGCGGA AAATGGCACT chr2L:11806498-11806618 100 1.53e-04 agtgctgtgc ggtgcggt ttcggtgcTA chrM:518-638 37 1.56e-04 ATTAAAAAGT GGAGCCGC TCCTTTCCAT chrX:19578952-19579072 64 1.79e-04 GCTCGTCGGG GGAGCAGA CAAATACACA chr3R:21630655-21630775 41 2.04e-04 TGTGTATTAA GCGGCAGT CCAGAGAGAG chr3L:16377840-16377960 85 2.39e-04 acacTCGTCT GCTGCTGT TTGTGTGCGA chr3R:17897627-17897747 2 2.39e-04 t gctgctgt tcgttgttgt chr2R:6116002-6116122 38 2.65e-04 AAACTAACCA GCAGCGCC GACTGCGAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCRGH MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:10665078-10665198 3.2e-06 66_[+3]_46 chr2L:16520294-16520414 6.5e-06 15_[+3]_97 chr3R:16209449-16209569 1.2e-05 107_[+3]_5 chr2R:22561520-22561640 1.2e-05 51_[+3]_61 chrX:9578822-9578942 1.2e-05 19_[+3]_93 chr3L:10660444-10660564 1.2e-05 62_[+3]_50 chrX:8059079-8059199 1.2e-05 20_[+3]_92 chr3L:21013667-21013787 1.7e-05 50_[+3]_62 chr2R:9712666-9712786 1.7e-05 18_[+3]_94 chr3R:23787897-23788017 2.7e-05 111_[+3]_1 chr3R:5078385-5078505 2.7e-05 39_[+3]_73 chr2L:5980382-5980502 3.7e-05 13_[+3]_99 chrX:17076919-17077039 3.7e-05 18_[+3]_94 chr2R:7014206-7014326 3.7e-05 86_[+3]_26 chr4:248177-248297 4.3e-05 47_[+3]_65 chr2R:18352263-18352383 4.3e-05 102_[+3]_10 chr3L:21009169-21009289 6.7e-05 18_[+3]_94 chr2R:17269466-17269586 6.7e-05 42_[+3]_70 chrX:8412466-8412586 6.7e-05 111_[+3]_1 chr2L:2038102-2038222 6.7e-05 11_[+3]_101 chr3L:2636087-2636207 6.7e-05 17_[+3]_95 chr4:415727-415847 6.7e-05 112_[+3] chr3L:8441814-8441934 8.3e-05 10_[+3]_102 chr2R:13047567-13047687 8.3e-05 45_[+3]_67 chr3L:7815864-7815984 8.3e-05 71_[+3]_41 chr2R:6119956-6120076 8.3e-05 103_[+3]_9 chr3L:546636-546756 8.3e-05 106_[+3]_6 chrX:20159126-20159246 9.6e-05 64_[+3]_48 chr4:1318987-1319107 0.0001 28_[+3]_84 chr3R:30805910-30806030 0.00013 31_[+3]_81 chr2L:7976781-7976901 0.00013 100_[+3]_12 chrX:15312729-15312849 0.00013 92_[+3]_20 chr2L:11806498-11806618 0.00015 99_[+3]_13 chrM:518-638 0.00016 36_[+3]_76 chrX:19578952-19579072 0.00018 63_[+3]_49 chr3R:21630655-21630775 0.0002 40_[+3]_72 chr3L:16377840-16377960 0.00024 84_[+3]_28 chr3R:17897627-17897747 0.00024 1_[+3]_111 chr2R:6116002-6116122 0.00027 37_[+3]_75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCRGH MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCWGCRGH width=8 seqs=39 chr3L:10665078-10665198 ( 67) GCAGCGGC 1 chr2L:16520294-16520414 ( 16) GCTGCGGC 1 chr3R:16209449-16209569 ( 108) GCAGCAGC 1 chr2R:22561520-22561640 ( 52) GCAGCAGC 1 chrX:9578822-9578942 ( 20) GCAGCAGC 1 chr3L:10660444-10660564 ( 63) GCAGCAGC 1 chrX:8059079-8059199 ( 21) GCAGCAGC 1 chr3L:21013667-21013787 ( 51) GCTGCAGC 1 chr2R:9712666-9712786 ( 19) GCTGCAGC 1 chr3R:23787897-23788017 ( 112) GCAGCGGT 1 chr3R:5078385-5078505 ( 40) GCAGCGGA 1 chr2L:5980382-5980502 ( 14) GCTGCGGA 1 chrX:17076919-17077039 ( 19) GCTGCGGT 1 chr2R:7014206-7014326 ( 87) GCTGCGGT 1 chr4:248177-248297 ( 48) GCAGCCGC 1 chr2R:18352263-18352383 ( 103) GGAGCGGC 1 chr3L:21009169-21009289 ( 19) GCAGCAGA 1 chr2R:17269466-17269586 ( 43) GCTGCCGC 1 chrX:8412466-8412586 ( 112) GGTGCGGC 1 chr2L:2038102-2038222 ( 12) GCGGCGGC 1 chr3L:2636087-2636207 ( 18) GCAGCAGA 1 chr4:415727-415847 ( 113) GCGGCGGC 1 chr3L:8441814-8441934 ( 11) GCTGCAGT 1 chr2R:13047567-13047687 ( 46) GCTGCAGA 1 chr3L:7815864-7815984 ( 72) GCTGCAGA 1 chr2R:6119956-6120076 ( 104) GCTGCAGT 1 chr3L:546636-546756 ( 107) GCTGCAGA 1 chrX:20159126-20159246 ( 65) GGTGCAGC 1 chr4:1318987-1319107 ( 29) GCAGCTGC 1 chr3R:30805910-30806030 ( 32) GCAGCCGT 1 chr2L:7976781-7976901 ( 101) GGAGCGGA 1 chrX:15312729-15312849 ( 93) GGAGCGGA 1 chr2L:11806498-11806618 ( 100) GGTGCGGT 1 chrM:518-638 ( 37) GGAGCCGC 1 chrX:19578952-19579072 ( 64) GGAGCAGA 1 chr3R:21630655-21630775 ( 41) GCGGCAGT 1 chr3L:16377840-16377960 ( 85) GCTGCTGT 1 chr3R:17897627-17897747 ( 2) GCTGCTGT 1 chr2R:6116002-6116122 ( 38) GCAGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCRGH MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4203 E= 8.1e-002 -1193 -1193 237 -1193 -1193 201 9 -1193 68 -1193 -133 51 -1193 -1193 237 -1193 -1193 234 -1193 -1193 52 -94 99 -199 -1193 -294 233 -1193 -25 131 -1193 -25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCRGH MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 8.1e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.794872 0.205128 0.000000 0.487179 0.000000 0.076923 0.435897 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.435897 0.102564 0.384615 0.076923 0.000000 0.025641 0.974359 0.000000 0.256410 0.487179 0.000000 0.256410 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCRGH MEME-3 regular expression -------------------------------------------------------------------------------- G[CG][AT]GC[AG]G[CAT] -------------------------------------------------------------------------------- Time 20.00 secs. ******************************************************************************** ******************************************************************************** MOTIF GRGGGGGC MEME-4 width = 8 sites = 3 llr = 37 E-value = 2.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRGGGGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :3:::::: pos.-specific C :::::::a probability G a7aaaaa: matrix T :::::::: bits 2.4 * ****** 2.1 * ****** 1.9 * ****** 1.7 * ****** Relative 1.4 * ****** Entropy 1.2 ******** (17.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGGGC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGGGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:11806498-11806618 39 1.97e-06 AATTGCCTTC GGGGGGGC ATTGCAAATT chr3R:7106988-7107108 56 1.97e-06 ggggtggggg gggggggc ggACCGAGGC chr2R:11182781-11182901 3 5.06e-06 GA GAGGGGGC GAGCCAGGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGGGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:11806498-11806618 2e-06 38_[+4]_74 chr3R:7106988-7107108 2e-06 55_[+4]_57 chr2R:11182781-11182901 5.1e-06 2_[+4]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGGGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRGGGGGC width=8 seqs=3 chr2L:11806498-11806618 ( 39) GGGGGGGC 1 chr3R:7106988-7107108 ( 56) GGGGGGGC 1 chr2R:11182781-11182901 ( 3) GAGGGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGGGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 2.7e+004 -823 -823 237 -823 13 -823 178 -823 -823 -823 237 -823 -823 -823 237 -823 -823 -823 237 -823 -823 -823 237 -823 -823 -823 237 -823 -823 234 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGGGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.7e+004 0.000000 0.000000 1.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGGGGC MEME-4 regular expression -------------------------------------------------------------------------------- G[GA]GGGGGC -------------------------------------------------------------------------------- Time 26.10 secs. ******************************************************************************** ******************************************************************************** MOTIF GSCGGAGG MEME-5 width = 8 sites = 3 llr = 36 E-value = 8.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSCGGAGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C :7a::::: probability G a3:aa:aa matrix T :::::::: bits 2.4 * *** ** 2.1 * *** ** 1.9 * *** ** 1.7 * ****** Relative 1.4 ******** Entropy 1.2 ******** (17.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCGGAGG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGGAGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13823890-13824010 83 3.16e-06 gGTCCTCCAA GCCGGAGG GCGTTGGGGA chr3R:23336915-23337035 35 3.16e-06 TTGGCACTTC GCCGGAGG GATTTGTCtg chr3R:20265932-20266052 32 6.25e-06 AAGGAGCAAC GGCGGAGG CCTCGATAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGGAGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13823890-13824010 3.2e-06 82_[+5]_30 chr3R:23336915-23337035 3.2e-06 34_[+5]_78 chr3R:20265932-20266052 6.3e-06 31_[+5]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGGAGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSCGGAGG width=8 seqs=3 chr2R:13823890-13824010 ( 83) GCCGGAGG 1 chr3R:23336915-23337035 ( 35) GCCGGAGG 1 chr3R:20265932-20266052 ( 32) GGCGGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGGAGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 8.3e+004 -823 -823 237 -823 -823 176 78 -823 -823 234 -823 -823 -823 -823 237 -823 -823 -823 237 -823 171 -823 -823 -823 -823 -823 237 -823 -823 -823 237 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGGAGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 8.3e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGGAGG MEME-5 regular expression -------------------------------------------------------------------------------- G[CG]CGGAGG -------------------------------------------------------------------------------- Time 32.21 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:6410089-6410209 9.10e-01 120 chr4:1183635-1183755 9.80e-01 120 chr3L:16162771-16162891 9.48e-01 120 chr4:1224191-1224311 9.44e-01 120 chr2L:21574525-21574645 9.05e-01 120 chr3R:4235554-4235674 7.33e-01 120 chr3L:546636-546756 1.35e-01 106_[+3(8.30e-05)]_6 chrX:6710607-6710727 5.92e-02 120 chrX:10800745-10800865 9.07e-01 120 chr3L:7814278-7814398 9.74e-01 120 chr2R:5683585-5683705 6.03e-02 64_[+1(1.29e-05)]_[+1(1.29e-05)]_\ [+1(1.29e-05)]_32 chr2R:13018348-13018468 5.26e-02 21_[+2(1.20e-05)]_91 chr3R:17897627-17897747 6.36e-03 111_[+2(1.98e-05)]_1 chr2L:11062675-11062795 4.11e-01 45_[+1(8.46e-05)]_67 chr3L:14540312-14540432 1.77e-01 120 chr2R:7014206-7014326 3.90e-02 86_[+3(3.66e-05)]_26 chr2L:17377815-17377935 1.02e-01 120 chr4:305049-305169 9.96e-01 120 chr3L:7859502-7859622 9.96e-01 120 chr3L:11259616-11259736 9.99e-01 120 chr3R:19626637-19626757 5.01e-01 120 chr3R:29781540-29781660 6.97e-01 120 chrX:3730636-3730756 3.13e-03 65_[+4(6.74e-05)]_47 chr2R:23724705-23724825 2.88e-01 89_[+1(8.46e-05)]_23 chr3R:14650495-14650615 1.15e-01 120 chr2R:19164494-19164614 7.08e-01 120 chr3R:30800007-30800127 7.72e-01 120 chrX:12738621-12738741 9.59e-01 120 chrX:12753085-12753205 7.57e-01 120 chrX:3774860-3774980 8.92e-01 120 chr2L:9567940-9568060 9.11e-01 120 chr3L:6551552-6551672 7.04e-01 120 chr3R:23340154-23340274 4.52e-01 120 chrX:6861022-6861142 9.96e-01 120 chr3R:7106988-7107108 1.80e-04 55_[+4(1.97e-06)]_57 chr3R:21620646-21620766 1.23e-01 34_[+2(1.20e-05)]_78 chr4:57241-57361 9.32e-01 120 chr4:852031-852151 9.91e-02 120 chr3L:20193194-20193314 8.70e-01 120 chrX:7701088-7701208 9.87e-01 120 chrX:1263438-1263558 1.15e-01 120 chr2R:6116002-6116122 3.34e-01 120 chr3R:23336915-23337035 3.99e-04 34_[+5(3.16e-06)]_78 chr2R:13007517-13007637 9.86e-01 120 chr2L:3720165-3720285 6.17e-01 120 chr3L:14758654-14758774 9.47e-01 120 chr3L:11257090-11257210 8.08e-01 120 chr2L:17449065-17449185 9.97e-01 120 chr2R:18352263-18352383 6.64e-02 102_[+3(4.31e-05)]_10 chr2L:21260271-21260391 8.67e-01 120 chr3L:549716-549836 2.70e-01 120 chr4:248177-248297 4.43e-02 47_[+3(4.31e-05)]_65 chr3L:9567646-9567766 8.78e-01 120 chr3R:5078385-5078505 6.25e-03 39_[+3(2.66e-05)]_73 chr2L:18149661-18149781 7.47e-01 120 chr3L:130863-130983 6.74e-01 120 chr3R:8814002-8814122 6.54e-01 120 chr4:305248-305368 9.99e-01 120 chr4:788144-788264 9.87e-01 120 chr3R:4745615-4745735 9.58e-01 120 chr4:1026249-1026369 1.57e-01 120 chr3R:23787897-23788017 2.06e-03 111_[+3(2.66e-05)]_1 chrX:2648538-2648658 1.99e-01 [+1(2.10e-05)]_112 chr3R:18915811-18915931 2.48e-01 120 chr2R:10542785-10542905 8.65e-01 120 chrX:16104233-16104353 3.55e-01 120 chrX:17076919-17077039 2.24e-01 18_[+3(3.66e-05)]_94 chrX:8059079-8059199 3.80e-03 20_[+3(1.15e-05)]_92 chr2L:17382002-17382122 9.75e-01 120 chr2R:21380086-21380206 9.70e-01 120 chr2R:18316564-18316684 9.49e-01 120 chr3R:22782169-22782289 8.80e-01 120 chr2L:18144388-18144508 1.12e-01 41_[+4(6.74e-05)]_71 chr3R:14710897-14711017 1.71e-01 112_[+2(5.73e-05)] chr3R:14019198-14019318 7.58e-01 120 chrX:522081-522201 3.45e-01 120 chr2L:12005150-12005270 9.72e-01 120 chrX:6706284-6706404 5.17e-01 120 chr3R:16249268-16249388 1.00e+00 120 chrX:6733591-6733711 7.55e-01 120 chr2R:19268547-19268667 8.59e-01 120 chrX:130810-130930 2.32e-03 11_[+2(4.03e-05)]_62_[+1(5.86e-05)]_\ 31 chr2R:9446558-9446678 6.47e-01 120 chr3R:26103915-26104035 9.42e-01 120 chrX:16104539-16104659 4.64e-01 120 chr3R:14286034-14286154 3.47e-01 120 chr3R:20264417-20264537 1.94e-01 120 chr4:1318987-1319107 6.89e-04 75_[+2(1.20e-05)]_37 chr4:136479-136599 9.07e-01 120 chr3L:10897668-10897788 9.25e-01 120 chr2R:6172349-6172469 8.53e-01 120 chr2R:6119956-6120076 2.02e-02 103_[+3(8.30e-05)]_9 chr2L:16351943-16352063 9.59e-01 120 chr3R:24570894-24571014 9.09e-02 120 chr2R:20597454-20597574 2.34e-02 120 chr3R:13014793-13014913 5.15e-01 120 chrX:19578952-19579072 2.77e-05 37_[+1(1.29e-05)]_15_[+4(6.74e-05)]_\ 8_[+1(1.29e-05)]_36 chr2L:11475076-11475196 1.00e+00 120 chr3L:7815864-7815984 9.87e-02 71_[+3(8.30e-05)]_41 chr2R:11603042-11603162 9.72e-01 120 chr2R:5109479-5109599 7.43e-01 120 chr2R:13047567-13047687 1.64e-01 45_[+3(8.30e-05)]_67 chr2L:9495961-9496081 9.35e-02 50_[+1(8.46e-05)]_62 chr2R:20597661-20597781 5.56e-01 120 chr3R:23729737-23729857 7.39e-01 120 chr2L:12507148-12507268 6.30e-01 120 chr3R:20265932-20266052 2.67e-03 31_[+5(6.25e-06)]_81 chr3L:10665078-10665198 4.86e-04 66_[+3(3.22e-06)]_46 chr3R:21582258-21582378 5.80e-01 120 chr3R:31725276-31725396 9.60e-01 120 chr4:625676-625796 9.20e-01 120 chr3R:21618891-21619011 2.97e-02 68_[+2(1.20e-05)]_4_[+2(1.20e-05)]_\ 32 chr3R:25122449-25122569 1.89e-02 23_[+1(1.29e-05)]_89 chr2L:14396253-14396373 8.40e-01 120 chr3L:10660444-10660564 4.11e-02 62_[+3(1.15e-05)]_50 chr2L:13296766-13296886 3.19e-01 120 chrM:17162-17282 1.00e+00 120 chr4:415727-415847 1.84e-02 112_[+3(6.73e-05)] chr3R:31223525-31223645 4.90e-01 120 chr3R:14285746-14285866 9.60e-01 120 chrM:1004-1124 1.00e+00 120 chr3R:6413947-6414067 9.00e-01 120 chr3L:3380908-3381028 3.21e-04 120 chr3L:629059-629179 1.59e-01 120 chr2R:18529880-18530000 4.26e-01 120 chr3R:4745816-4745936 8.13e-02 120 chrX:9578822-9578942 8.49e-02 19_[+3(1.15e-05)]_93 chr2L:16492127-16492247 6.06e-01 120 chrM:3976-4096 1.00e+00 120 chr2R:21474758-21474878 4.18e-03 86_[+1(6.38e-05)]_26 chr3L:17668468-17668588 8.18e-01 120 chrX:13371514-13371634 2.30e-01 67_[+2(4.53e-05)]_45 chr3R:14026797-14026917 9.52e-01 120 chr3R:11460765-11460885 2.94e-02 82_[+1(8.46e-05)]_30 chrX:16424289-16424409 1.00e+00 120 chr2L:16530961-16531081 1.90e-01 54_[+2(2.75e-05)]_58 chr2L:23512802-23512922 1.00e+00 120 chr2R:1513843-1513963 3.04e-01 120 chr2L:5207530-5207650 9.16e-01 120 chr2R:18800851-18800971 1.96e-01 120 chr2L:6724369-6724489 5.43e-02 120 chr2R:18357047-18357167 4.62e-01 120 chr3R:17706315-17706435 4.94e-01 120 chr3L:8441814-8441934 2.87e-03 10_[+3(8.30e-05)]_57_[+1(1.29e-05)]_\ 18_[+1(1.29e-05)]_11 chr2R:10734643-10734763 3.13e-02 17_[+2(5.73e-05)]_95 chr2R:11358771-11358891 3.51e-01 120 chr3L:1349874-1349994 4.81e-02 84_[+1(2.92e-05)]_8_[+1(1.29e-05)]_\ 12 chr2R:13823890-13824010 8.92e-05 82_[+5(3.16e-06)]_5_[+4(6.74e-05)]_\ 17 chr2R:10102041-10102161 9.62e-01 120 chr2L:12546131-12546251 3.14e-01 120 chr3L:2636087-2636207 3.36e-03 17_[+3(6.73e-05)]_4_[+1(1.29e-05)]_\ 21_[+1(1.29e-05)]_54 chr4:960331-960451 1.40e-02 26_[+2(1.20e-05)]_86 chrX:15312729-15312849 5.64e-04 26_[+2(1.98e-05)]_[+2(3.53e-05)]_4_\ [+2(1.98e-05)]_[+2(3.53e-05)]_4_[+2(1.20e-05)]_6_[+2(1.20e-05)]_32 chr3L:17994918-17995038 6.27e-01 120 chrX:10802309-10802429 1.32e-01 18_[+1(4.21e-05)]_94 chr2L:19157227-19157347 6.42e-01 120 chr2L:2197827-2197947 6.32e-02 105_[+2(4.03e-05)]_7 chr2L:7976781-7976901 3.97e-04 31_[+1(1.29e-05)]_[+1(2.92e-05)]_2_\ [+1(5.86e-05)]_10_[+1(2.10e-05)]_45 chr2L:19791219-19791339 3.31e-04 106_[+1(1.29e-05)]_6 chrX:21281581-21281701 6.19e-01 120 chrM:3285-3405 1.00e+00 120 chr2L:8100542-8100662 1.00e+00 120 chr3R:9352767-9352887 1.49e-01 120 chr3L:18002962-18003082 9.75e-01 120 chr2L:12506833-12506953 1.89e-02 33_[+5(2.32e-05)]_79 chr4:44725-44845 9.55e-01 120 chrM:518-638 4.07e-01 120 chr4:557319-557439 7.04e-02 92_[+2(8.20e-05)]_20 chr2R:14486900-14487020 9.47e-01 120 chr2L:11806498-11806618 1.29e-03 38_[+4(1.97e-06)]_74 chr3R:4739104-4739224 2.06e-01 84_[+1(5.86e-05)]_28 chr3L:14674158-14674278 9.36e-01 120 chr2R:23746257-23746377 4.97e-02 24_[+1(1.29e-05)]_88 chr3L:11561964-11562084 3.49e-02 46_[+1(2.10e-05)]_37_[+1(2.10e-05)]_\ 21 chr4:570813-570933 9.66e-01 120 chr2L:2038102-2038222 3.56e-06 11_[+3(6.73e-05)]_51_[+1(1.29e-05)]_\ 2_[+1(1.29e-05)]_32 chr3R:15293309-15293429 8.15e-01 120 chrX:11714383-11714503 4.63e-01 120 chr3L:17995173-17995293 4.85e-02 84_[+1(5.86e-05)]_28 chr4:1196992-1197112 9.60e-01 120 chr2L:5209600-5209720 3.60e-01 120 chr3R:20254181-20254301 3.07e-01 106_[+2(3.53e-05)]_6 chr2R:22561520-22561640 7.56e-04 13_[+1(1.29e-05)]_[+1(1.29e-05)]_22_\ [+3(1.15e-05)]_61 chrX:20159126-20159246 3.50e-02 64_[+3(9.62e-05)]_48 chrM:2369-2489 1.00e+00 120 chr3L:16377840-16377960 1.43e-05 35_[+1(2.10e-05)]_21_[+1(1.29e-05)]_\ 21_[+2(1.98e-05)]_19 chr3L:5655627-5655747 3.45e-01 120 chr3L:17967611-17967731 9.99e-01 120 chr3R:28889421-28889541 1.77e-03 23_[+1(4.21e-05)]_34_[+2(4.03e-05)]_\ 28_[+2(1.98e-05)]_11 chr2R:9712666-9712786 2.87e-05 18_[+3(1.66e-05)]_5_[+1(2.10e-05)]_\ 25_[+1(1.29e-05)]_3_[+2(6.23e-05)]_37 chr4:63443-63563 9.01e-01 120 chr2R:18531453-18531573 1.20e-01 71_[+1(2.92e-05)]_41 chr3L:21013667-21013787 2.67e-03 50_[+3(1.66e-05)]_62 chr3L:11285803-11285923 9.69e-02 120 chrX:22433038-22433158 1.00e+00 120 chr2R:11198697-11198817 1.21e-01 57_[+2(4.53e-05)]_10_[+2(9.29e-05)]_\ 37 chr3L:16052881-16053001 6.46e-04 2_[+2(8.20e-05)]_42_[+1(5.86e-05)]_\ 16_[+1(1.29e-05)]_36 chrM:12825-12945 6.99e-01 120 chr3R:14052644-14052764 2.93e-01 7_[+2(9.29e-05)]_105 chr3L:16166057-16166177 8.38e-01 120 chr3R:31059534-31059654 3.94e-02 120 chr3R:30805910-30806030 2.55e-05 13_[+1(1.29e-05)]_75_[+2(1.20e-05)]_\ 16 chrX:8412466-8412586 2.08e-05 9_[+1(2.10e-05)]_26_[+2(1.20e-05)]_\ 60_[+3(6.73e-05)]_1 chr2R:17269466-17269586 1.76e-01 42_[+3(6.73e-05)]_70 chr3R:8357752-8357872 5.07e-03 11_[+2(1.20e-05)]_101 chr4:314065-314185 9.49e-01 120 chrM:9785-9905 1.00e+00 120 chrM:6072-6192 1.00e+00 120 chr2R:19229823-19229943 3.03e-03 120 chrM:4487-4607 9.98e-01 120 chr2L:9176545-9176665 3.58e-02 83_[+2(2.75e-05)]_4_[+2(4.03e-05)]_\ 4_[+2(1.20e-05)]_5 chr4:1031190-1031310 9.83e-01 120 chr3R:30806110-30806230 1.04e-02 15_[+1(1.29e-05)]_5_[+1(9.51e-05)]_\ 10_[+1(2.92e-05)]_8_[+1(1.29e-05)]_50 chr3R:4232786-4232906 9.72e-01 120 chr3R:4232582-4232702 8.84e-01 120 chr3L:16160049-16160169 9.50e-01 120 chrM:12455-12575 8.78e-01 120 chr3R:21630655-21630775 1.13e-04 78_[+2(1.20e-05)]_34 chr2R:11182781-11182901 6.92e-03 2_[+4(5.06e-06)]_110 chr2L:16520294-16520414 1.75e-02 15_[+3(6.46e-06)]_97 chr3R:16209449-16209569 2.42e-03 28_[+1(2.10e-05)]_71_[+3(1.15e-05)]_\ 5 chr3R:14057327-14057447 1.48e-01 67_[+1(5.86e-05)]_45 chrM:10008-10128 9.82e-01 120 chr3R:9940858-9940978 9.98e-01 120 chrM:4708-4828 7.25e-01 120 chr3L:8704944-8705064 8.03e-03 120 chrM:6968-7088 9.99e-01 120 chrX:2042372-2042492 9.77e-01 120 chrM:286-406 9.97e-01 120 chrM:4910-5030 8.19e-01 120 chrX:19683077-19683197 6.35e-02 49_[+1(2.92e-05)]_[+1(9.51e-05)]_17_\ [+1(1.29e-05)]_30 chrM:11432-11552 9.93e-01 120 chr4:670894-671014 8.55e-01 120 chr2R:10430007-10430127 9.02e-02 6_[+2(1.20e-05)]_106 chr2L:247073-247193 5.66e-02 120 chrX:3378756-3378876 1.54e-02 13_[+1(1.29e-05)]_[+1(1.29e-05)]_91 chrX:12665057-12665177 3.25e-01 112_[+1(9.51e-05)] chrM:11224-11344 9.51e-01 120 chr2L:9176948-9177068 8.57e-01 120 chr4:571015-571135 7.97e-01 120 chr4:210030-210150 8.64e-01 120 chr2R:23617844-23617964 7.01e-01 120 chrM:14135-14255 8.97e-01 120 chrX:2294922-2295042 2.25e-01 120 chr2L:5980382-5980502 2.80e-03 13_[+3(3.66e-05)]_99 chrM:13216-13336 8.57e-01 120 chr2L:16533639-16533759 9.63e-01 120 chr2L:6723002-6723122 3.81e-04 9_[+2(3.53e-05)]_49_[+1(8.46e-05)]_\ 46 chr3L:16955603-16955723 1.35e-01 120 chr3L:21009169-21009289 3.15e-02 18_[+3(6.73e-05)]_94 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************