******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Ssrp.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:21296858-21296978 1.0000 120 chrX:7095045-7095165 1.0000 120 chrX:6663000-6663120 1.0000 120 chr2R:10278144-10278264 1.0000 120 chr2L:5445980-5446100 1.0000 120 chr2L:10351286-10351406 1.0000 120 chr3L:18227481-18227601 1.0000 120 chrX:18533389-18533509 1.0000 120 chr2L:14023479-14023599 1.0000 120 chr3L:10391086-10391206 1.0000 120 chr3R:22220956-22221076 1.0000 120 chr2R:18963292-18963412 1.0000 120 chr2R:14969711-14969831 1.0000 120 chr2R:8242196-8242316 1.0000 120 chr2R:13474949-13475069 1.0000 120 chrX:7104577-7104697 1.0000 120 chr3L:110084-110204 1.0000 120 chrX:20644113-20644233 1.0000 120 chr3L:5280107-5280227 1.0000 120 chrX:5970002-5970122 1.0000 120 chr2R:12020598-12020718 1.0000 120 chr2L:18906772-18906892 1.0000 120 chr3R:6241362-6241482 1.0000 120 chr2R:16091904-16092024 1.0000 120 chr2L:12530081-12530201 1.0000 120 chr2R:23051766-23051886 1.0000 120 chr3R:22794095-22794215 1.0000 120 chr3L:19074042-19074162 1.0000 120 chrX:3109014-3109134 1.0000 120 chr2R:14485484-14485604 1.0000 120 chrX:7539266-7539386 1.0000 120 chr3L:3873169-3873289 1.0000 120 chr3L:1464548-1464668 1.0000 120 chr2R:22402866-22402986 1.0000 120 chr2R:20126748-20126868 1.0000 120 chr3R:17048998-17049118 1.0000 120 chrX:13307274-13307394 1.0000 120 chr2R:18325117-18325237 1.0000 120 chr2L:4286310-4286430 1.0000 120 chr2R:22384455-22384575 1.0000 120 chrX:3455556-3455676 1.0000 120 chr2L:521461-521581 1.0000 120 chr2L:16533797-16533917 1.0000 120 chr3L:10428859-10428979 1.0000 120 chr3L:11443671-11443791 1.0000 120 chr3R:26968859-26968979 1.0000 120 chr2R:8759561-8759681 1.0000 120 chr3R:26968157-26968277 1.0000 120 chr2L:19121088-19121208 1.0000 120 chr2L:16869121-16869241 1.0000 120 chr3R:19014927-19015047 1.0000 120 chr3L:815362-815482 1.0000 120 chr2R:10439047-10439167 1.0000 120 chrX:17481688-17481808 1.0000 120 chr2R:14971155-14971275 1.0000 120 chr2R:23187220-23187340 1.0000 120 chr2R:12706009-12706129 1.0000 120 chr3L:15174962-15175082 1.0000 120 chr2L:13876790-13876910 1.0000 120 chr3R:32052329-32052449 1.0000 120 chr3R:22878587-22878707 1.0000 120 chrX:4581919-4582039 1.0000 120 chr3L:9042789-9042909 1.0000 120 chr3R:15650432-15650552 1.0000 120 chr3L:22665254-22665374 1.0000 120 chr3L:17009704-17009824 1.0000 120 chr3L:11278925-11279045 1.0000 120 chr3L:16825247-16825367 1.0000 120 chr2R:18273492-18273612 1.0000 120 chr3L:15693204-15693324 1.0000 120 chr3L:5994224-5994344 1.0000 120 chrX:17471726-17471846 1.0000 120 chr2L:7150893-7151013 1.0000 120 chr2L:18871887-18872007 1.0000 120 chrX:3740391-3740511 1.0000 120 chr2R:24897738-24897858 1.0000 120 chr2L:19373930-19374050 1.0000 120 chr3L:7592237-7592357 1.0000 120 chrX:5085964-5086084 1.0000 120 chrX:3745314-3745434 1.0000 120 chr3L:3786916-3787036 1.0000 120 chrX:9350400-9350520 1.0000 120 chr3L:16054249-16054369 1.0000 120 chr3L:15275605-15275725 1.0000 120 chr3R:28904315-28904435 1.0000 120 chr2R:23567423-23567543 1.0000 120 chr2L:5042225-5042345 1.0000 120 chr2R:10541326-10541446 1.0000 120 chr2L:1646699-1646819 1.0000 120 chr3L:18102225-18102345 1.0000 120 chrX:17582096-17582216 1.0000 120 chr2L:9206554-9206674 1.0000 120 chr3R:26900126-26900246 1.0000 120 chr3R:21834381-21834501 1.0000 120 chr2R:21909976-21910096 1.0000 120 chrX:12547172-12547292 1.0000 120 chr2R:20590629-20590749 1.0000 120 chrX:17229936-17230056 1.0000 120 chr3L:3449861-3449981 1.0000 120 chr3L:16697168-16697288 1.0000 120 chr3L:19338336-19338456 1.0000 120 chr3R:6008191-6008311 1.0000 120 chrX:8445007-8445127 1.0000 120 chr3R:30734736-30734856 1.0000 120 chr2L:7149042-7149162 1.0000 120 chrX:15618038-15618158 1.0000 120 chr2L:7566736-7566856 1.0000 120 chr3R:10449117-10449237 1.0000 120 chr2L:21573211-21573331 1.0000 120 chr3R:17955856-17955976 1.0000 120 chr3R:8964048-8964168 1.0000 120 chrX:12241135-12241255 1.0000 120 chr3L:7634929-7635049 1.0000 120 chrX:14622350-14622470 1.0000 120 chr2L:17747238-17747358 1.0000 120 chrX:6615580-6615700 1.0000 120 chr3R:19093428-19093548 1.0000 120 chrX:12225370-12225490 1.0000 120 chr3R:4311231-4311351 1.0000 120 chr3R:29717665-29717785 1.0000 120 chr2L:3100906-3101026 1.0000 120 chr3R:10354016-10354136 1.0000 120 chr2R:7141858-7141978 1.0000 120 chr3L:15672964-15673084 1.0000 120 chr2R:17458974-17459094 1.0000 120 chr2L:9996739-9996859 1.0000 120 chr3L:10767249-10767369 1.0000 120 chr3L:14166425-14166545 1.0000 120 chr3R:21594474-21594594 1.0000 120 chr2L:7541469-7541589 1.0000 120 chr3L:10350897-10351017 1.0000 120 chr2R:6220001-6220121 1.0000 120 chr3R:10681716-10681836 1.0000 120 chr3L:10428201-10428321 1.0000 120 chr3R:9344943-9345063 1.0000 120 chr3R:13448506-13448626 1.0000 120 chr3L:17404845-17404965 1.0000 120 chr3L:517322-517442 1.0000 120 chr2L:2857898-2858018 1.0000 120 chr3R:9159920-9160040 1.0000 120 chr2L:18648354-18648474 1.0000 120 chr3R:13549644-13549764 1.0000 120 chr2L:10543533-10543653 1.0000 120 chr3R:13793455-13793575 1.0000 120 chr3R:25445630-25445750 1.0000 120 chr3R:13907804-13907924 1.0000 120 chr3L:10951207-10951327 1.0000 120 chr3L:10337660-10337780 1.0000 120 chr3L:6885758-6885878 1.0000 120 chr3L:14328584-14328704 1.0000 120 chr3L:6157718-6157838 1.0000 120 chr2L:14024880-14025000 1.0000 120 chrX:17780390-17780510 1.0000 120 chr2R:9711856-9711976 1.0000 120 chr3R:29581610-29581730 1.0000 120 chr3R:14470765-14470885 1.0000 120 chr3L:5952189-5952309 1.0000 120 chr2L:14537645-14537765 1.0000 120 chr2L:1070491-1070611 1.0000 120 chr3R:25184101-25184221 1.0000 120 chrX:17782120-17782240 1.0000 120 chr2L:3851416-3851536 1.0000 120 chr2L:7293583-7293703 1.0000 120 chrX:8125334-8125454 1.0000 120 chr3R:11852101-11852221 1.0000 120 chr2L:17588788-17588908 1.0000 120 chr3R:23921783-23921903 1.0000 120 chr3R:8849507-8849627 1.0000 120 chr3L:14961146-14961266 1.0000 120 chr2R:15134255-15134375 1.0000 120 chr3L:295191-295311 1.0000 120 chr3R:9494424-9494544 1.0000 120 chrX:18921064-18921184 1.0000 120 chr3L:11336524-11336644 1.0000 120 chr3L:224290-224410 1.0000 120 chr2R:19874588-19874708 1.0000 120 chr3L:3059368-3059488 1.0000 120 chr3R:21613013-21613133 1.0000 120 chr3L:11291625-11291745 1.0000 120 chrX:5968241-5968361 1.0000 120 chr2L:14562344-14562464 1.0000 120 chr3L:8951156-8951276 1.0000 120 chr3L:3380633-3380753 1.0000 120 chrX:14743921-14744041 1.0000 120 chr2L:10752379-10752499 1.0000 120 chr2L:9564639-9564759 1.0000 120 chr3R:7108145-7108265 1.0000 120 chr3L:18349394-18349514 1.0000 120 chr3L:905111-905231 1.0000 120 chr2L:19884572-19884692 1.0000 120 chr2R:5122245-5122365 1.0000 120 chr3R:23730030-23730150 1.0000 120 chr3R:17231646-17231766 1.0000 120 chr3R:29265232-29265352 1.0000 120 chr3R:13446628-13446748 1.0000 120 chr3R:29690565-29690685 1.0000 120 chr3L:18402749-18402869 1.0000 120 chr3L:6981921-6982041 1.0000 120 chr3L:11429819-11429939 1.0000 120 chr3L:16760459-16760579 1.0000 120 chr3L:22277378-22277498 1.0000 120 chr2R:14161266-14161386 1.0000 120 chr2L:19059030-19059150 1.0000 120 chr3L:3851943-3852063 1.0000 120 chrX:14634864-14634984 1.0000 120 chr3R:5660163-5660283 1.0000 120 chr3L:10893524-10893644 1.0000 120 chr3L:8763325-8763445 1.0000 120 chr3L:3875148-3875268 1.0000 120 chr2R:21364771-21364891 1.0000 120 chr3R:8955016-8955136 1.0000 120 chr3L:14363208-14363328 1.0000 120 chr2R:19860366-19860486 1.0000 120 chr2L:9595036-9595156 1.0000 120 chrX:3397010-3397130 1.0000 120 chr2R:17533784-17533904 1.0000 120 chrX:7703120-7703240 1.0000 120 chr3R:23969576-23969696 1.0000 120 chr2R:10681407-10681527 1.0000 120 chr3L:18272357-18272477 1.0000 120 chr3L:9028160-9028280 1.0000 120 chr3R:23293552-23293672 1.0000 120 chr3L:3078528-3078648 1.0000 120 chrX:15890226-15890346 1.0000 120 chr3L:3855277-3855397 1.0000 120 chr2L:14245633-14245753 1.0000 120 chr2L:13203423-13203543 1.0000 120 chr3L:16452464-16452584 1.0000 120 chr2L:15908565-15908685 1.0000 120 chr2L:21310260-21310380 1.0000 120 chrX:19225111-19225231 1.0000 120 chr2R:12727652-12727772 1.0000 120 chrX:5329431-5329551 1.0000 120 chrX:19371639-19371759 1.0000 120 chr2R:15034864-15034984 1.0000 120 chr2R:22677946-22678066 1.0000 120 chr2R:15322270-15322390 1.0000 120 chr3R:23297675-23297795 1.0000 120 chr3L:18250847-18250967 1.0000 120 chr3L:19898962-19899082 1.0000 120 chrX:13764500-13764620 1.0000 120 chr3R:8978848-8978968 1.0000 120 chr2L:7492036-7492156 1.0000 120 chrX:9899859-9899979 1.0000 120 chr2L:14701629-14701749 1.0000 120 chr2L:2374175-2374295 1.0000 120 chr2L:7270413-7270533 1.0000 120 chr3L:6817079-6817199 1.0000 120 chr2R:19127961-19128081 1.0000 120 chr3L:14172672-14172792 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Ssrp/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Ssrp.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.368 C 0.132 G 0.136 T 0.364 Background letter frequencies (from file dataset with add-one prior applied): A 0.368 C 0.132 G 0.136 T 0.364 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF BGSGYGGS MEME-1 width = 8 sites = 14 llr = 146 E-value = 1.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif BGSGYGGS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::::: pos.-specific C 214:4:14 probability G 496a:896 matrix T 3:::62:: bits 2.9 * 2.6 * * 2.3 * * * 2.0 *** ** Relative 1.8 *** *** Entropy 1.5 *** *** (15.0 bits) 1.2 ******* 0.9 ******* 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GGGGTGGG consensus T C CT C sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGSGYGGS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2857898-2858018 101 1.14e-07 AAACTAAATA GGGGCGGG CAATTGCTTA chr3R:17231646-17231766 69 1.17e-06 TCGAGTCCGA GGCGCGGC AAGCTTAAGT chrX:19371639-19371759 86 2.29e-06 cgttagaatg ggcgtggc aaaatgggtc chr2R:15034864-15034984 58 2.88e-06 TAGTCGAAGC TGGGCGGG AATTATCTAT chr3R:19093428-19093548 88 3.28e-06 GCGAAAGCAG CGGGTGGC AACTTTTGGC chrX:3740391-3740511 113 4.53e-06 AAATAAAACT TGGGTGGG chr2R:22384455-22384575 79 4.81e-06 GATAATTCCC CGCGTGGC TTTCATCACA chr3R:10681716-10681836 106 6.03e-06 TTGCCGTCTG TGCGTGGG CCGTTAT chr2L:7150893-7151013 5 6.33e-06 AGAT GCGGTGGG CATACTAGCA chr3L:224290-224410 72 8.65e-06 CAAGCTAAGA GGCGCTGG CAGCGACCTA chr2R:20590629-20590749 23 1.72e-05 GATTGTGAAA AGGGTGGG GAGTGCACTG chr2L:10752379-10752499 18 2.33e-05 TGTAAAAAAC CGGGTGCG GTTAAGTCAT chr2L:5042225-5042345 35 3.31e-05 ATAATTTCAT TGGGTTGG AAAGTATCCT chr3R:6008191-6008311 109 5.15e-05 AAGCGAAAGT GCCGCTGC TGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGSGYGGS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2857898-2858018 1.1e-07 100_[+1]_12 chr3R:17231646-17231766 1.2e-06 68_[+1]_44 chrX:19371639-19371759 2.3e-06 85_[+1]_27 chr2R:15034864-15034984 2.9e-06 57_[+1]_55 chr3R:19093428-19093548 3.3e-06 87_[+1]_25 chrX:3740391-3740511 4.5e-06 112_[+1] chr2R:22384455-22384575 4.8e-06 78_[+1]_34 chr3R:10681716-10681836 6e-06 105_[+1]_7 chr2L:7150893-7151013 6.3e-06 4_[+1]_108 chr3L:224290-224410 8.7e-06 71_[+1]_41 chr2R:20590629-20590749 1.7e-05 22_[+1]_90 chr2L:10752379-10752499 2.3e-05 17_[+1]_95 chr2L:5042225-5042345 3.3e-05 34_[+1]_78 chr3R:6008191-6008311 5.2e-05 108_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGSGYGGS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BGSGYGGS width=8 seqs=14 chr2L:2857898-2858018 ( 101) GGGGCGGG 1 chr3R:17231646-17231766 ( 69) GGCGCGGC 1 chrX:19371639-19371759 ( 86) GGCGTGGC 1 chr2R:15034864-15034984 ( 58) TGGGCGGG 1 chr3R:19093428-19093548 ( 88) CGGGTGGC 1 chrX:3740391-3740511 ( 113) TGGGTGGG 1 chr2R:22384455-22384575 ( 79) CGCGTGGC 1 chr3R:10681716-10681836 ( 106) TGCGTGGG 1 chr2L:7150893-7151013 ( 5) GCGGTGGG 1 chr3L:224290-224410 ( 72) GGCGCTGG 1 chr2R:20590629-20590749 ( 23) AGGGTGGG 1 chr2L:10752379-10752499 ( 18) CGGGTGCG 1 chr2L:5042225-5042345 ( 35) TGGGTTGG 1 chr3R:6008191-6008311 ( 109) GCCGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGSGYGGS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.6482 E= 1.3e+001 -236 70 165 -35 -1045 11 265 -1045 -1045 170 207 -1045 -1045 -1045 288 -1045 -1045 143 -1045 82 -1045 -1045 253 -76 -1045 -89 277 -1045 -1045 143 224 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGSGYGGS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.3e+001 0.071429 0.214286 0.428571 0.285714 0.000000 0.142857 0.857143 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.357143 0.000000 0.642857 0.000000 0.000000 0.785714 0.214286 0.000000 0.071429 0.928571 0.000000 0.000000 0.357143 0.642857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGSGYGGS MEME-1 regular expression -------------------------------------------------------------------------------- [GTC]G[GC]G[TC][GT]G[GC] -------------------------------------------------------------------------------- Time 7.60 secs. ******************************************************************************** ******************************************************************************** MOTIF CSACMCGC MEME-2 width = 8 sites = 5 llr = 62 E-value = 7.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSACMCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::8:4::: pos.-specific C a6:a6a2a probability G :4::::8: matrix T ::2::::: bits 2.9 * * * * 2.6 * * * * 2.3 * * * * 2.0 ** * *** Relative 1.8 ** * *** Entropy 1.5 ** ***** (17.9 bits) 1.2 ** ***** 0.9 ** ***** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCACCCGC consensus GT A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSACMCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23730030-23730150 101 2.65e-07 TGTGTGAACA CCACCCGC CGAGTCCTAC chrX:5085964-5086084 90 1.06e-06 TTCGTTATTG CCTCCCGC CGCGTCTTAT chrX:17782120-17782240 48 1.79e-06 TAATTTTATA CCACACGC CAAAAATCAA chrX:5968241-5968361 108 2.33e-06 CCTATTGTTT CGACCCCC TGTGT chr2R:13474949-13475069 2 3.09e-06 A CGACACGC ACTGCAGGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSACMCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23730030-23730150 2.6e-07 100_[+2]_12 chrX:5085964-5086084 1.1e-06 89_[+2]_23 chrX:17782120-17782240 1.8e-06 47_[+2]_65 chrX:5968241-5968361 2.3e-06 107_[+2]_5 chr2R:13474949-13475069 3.1e-06 1_[+2]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSACMCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSACMCGC width=8 seqs=5 chr3R:23730030-23730150 ( 101) CCACCCGC 1 chrX:5085964-5086084 ( 90) CCTCCCGC 1 chrX:17782120-17782240 ( 48) CCACACGC 1 chrX:5968241-5968361 ( 108) CGACCCCC 1 chr2R:13474949-13475069 ( 2) CGACACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSACMCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 7.0e+002 -897 292 -897 -897 -897 218 155 -897 112 -897 -897 -86 -897 292 -897 -897 12 218 -897 -897 -897 292 -897 -897 -897 60 255 -897 -897 292 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSACMCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.0e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.800000 0.000000 0.000000 0.200000 0.000000 1.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSACMCGC MEME-2 regular expression -------------------------------------------------------------------------------- C[CG][AT]C[CA]C[GC]C -------------------------------------------------------------------------------- Time 13.81 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGCACDG MEME-3 width = 8 sites = 13 llr = 131 E-value = 4.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGCACDG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::1a:4: pos.-specific C 2::9:8:2 probability G 8:a::247 matrix T :a::::21 bits 2.9 * 2.6 * 2.3 ** 2.0 * ** * Relative 1.8 * ** * * Entropy 1.5 ****** * (14.5 bits) 1.2 ****** * 0.9 ****** * 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GTGCACAG consensus C GGC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCACDG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:6817079-6817199 7 2.96e-06 AAATGG GTGCACAG AGAGAAATTG chr2R:15134255-15134375 64 2.96e-06 TAAAATCGAA GTGCACAG TTCCCAGTCC chrX:7104577-7104697 104 3.73e-06 AGCACAGGAT GTGCACGC ACAACttaa chr2R:17458974-17459094 47 7.47e-06 ACATGAACCA GTGCACTG AAGAAAAATA chr2R:20590629-20590749 33 7.47e-06 AGGGTGGGGA GTGCACTG AAAAATATTT chr2R:8242196-8242316 88 9.57e-06 ATATACATAG GTGCACAC CCAGCATATA chr3R:6008191-6008311 80 1.39e-05 TCGTTGTTCG GTGCAGAG CGAAGAAGAA chr3L:18227481-18227601 101 1.39e-05 CAAAAAATAC GTGCAGAG ATTAGTGTAA chr2R:21909976-21910096 75 1.54e-05 GGAAAATAAG CTGCACGC CATAATTACA chr2R:13474949-13475069 11 1.62e-05 ACGACACGCA CTGCAGGG CAAGAAAAAG chr2L:10752379-10752499 2 2.26e-05 G CTGCACTG TAAAAAACCG chr3L:14172672-14172792 97 2.47e-05 TTTAGAATAA GTGCACGT ATAAATATAC chrX:15890226-15890346 5 3.41e-05 CTCA GTGAACGG AAATTCCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCACDG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:6817079-6817199 3e-06 6_[+3]_106 chr2R:15134255-15134375 3e-06 63_[+3]_49 chrX:7104577-7104697 3.7e-06 103_[+3]_9 chr2R:17458974-17459094 7.5e-06 46_[+3]_66 chr2R:20590629-20590749 7.5e-06 32_[+3]_80 chr2R:8242196-8242316 9.6e-06 87_[+3]_25 chr3R:6008191-6008311 1.4e-05 79_[+3]_33 chr3L:18227481-18227601 1.4e-05 100_[+3]_12 chr2R:21909976-21910096 1.5e-05 74_[+3]_38 chr2R:13474949-13475069 1.6e-05 10_[+3]_102 chr2L:10752379-10752499 2.3e-05 1_[+3]_111 chr3L:14172672-14172792 2.5e-05 96_[+3]_16 chrX:15890226-15890346 3.4e-05 4_[+3]_108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCACDG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGCACDG width=8 seqs=13 chr3L:6817079-6817199 ( 7) GTGCACAG 1 chr2R:15134255-15134375 ( 64) GTGCACAG 1 chrX:7104577-7104697 ( 104) GTGCACGC 1 chr2R:17458974-17459094 ( 47) GTGCACTG 1 chr2R:20590629-20590749 ( 33) GTGCACTG 1 chr2R:8242196-8242316 ( 88) GTGCACAC 1 chr3R:6008191-6008311 ( 80) GTGCAGAG 1 chr3L:18227481-18227601 ( 101) GTGCAGAG 1 chr2R:21909976-21910096 ( 75) CTGCACGC 1 chr2R:13474949-13475069 ( 11) CTGCAGGG 1 chr2L:10752379-10752499 ( 2) CTGCACTG 1 chr3L:14172672-14172792 ( 97) GTGCACGT 1 chrX:15890226-15890346 ( 5) GTGAACGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCACDG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6156 E= 4.1e+003 -1035 80 250 -1035 -1035 -1035 -1035 146 -1035 -1035 288 -1035 -225 280 -1035 -1035 144 -1035 -1035 -1035 -1035 254 76 -1035 6 -1035 150 -66 -1035 80 235 -224 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCACDG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 4.1e+003 0.000000 0.230769 0.769231 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.076923 0.923077 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.769231 0.230769 0.000000 0.384615 0.000000 0.384615 0.230769 0.000000 0.230769 0.692308 0.076923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCACDG MEME-3 regular expression -------------------------------------------------------------------------------- [GC]TGCA[CG][AGT][GC] -------------------------------------------------------------------------------- Time 20.17 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGCCTWA MEME-4 width = 8 sites = 14 llr = 140 E-value = 4.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGCCTWA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::37 pos.-specific C :1:8a:1: probability G a:a2::13 matrix T :9:::a5: bits 2.9 * * * 2.6 * * * 2.3 * * * 2.0 * *** Relative 1.8 * *** Entropy 1.5 * **** (14.4 bits) 1.2 ****** 0.9 ****** * 0.6 ****** * 0.3 ****** * 0.0 -------- Multilevel GTGCCTTA consensus G AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCCTWA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:19074042-19074162 112 2.11e-06 TTTTTGTCGT GTGCCTTG C chr2L:18906772-18906892 84 2.11e-06 ACTAGTGTAT GTGCCTTG AATTTCTATG chr2L:19884572-19884692 74 7.83e-06 AATATATTGA GTGCCTTA AAGTACCTCA chr3L:1464548-1464668 78 7.83e-06 CTGCGATTTC GTGCCTTA TTGAAATTGC chr3L:3851943-3852063 60 1.07e-05 AACTGAAATG GTGCCTCA AGTTAAGGCC chr3L:19338336-19338456 16 1.07e-05 TTATGGCACA GTGCCTCA AAGAAATCTT chr3L:18349394-18349514 102 1.94e-05 ATACGTTCTT GTGCCTAA AATATAAACT chr3R:21613013-21613133 63 1.94e-05 TTAACATATT GTGCCTAA CTAAATCATT chr3R:26900126-26900246 18 1.94e-05 TCATGTTCTT GTGCCTAA ATAACTTGAC chr2L:15908565-15908685 14 2.14e-05 CGCTTAAATA GCGCCTTA AATAAGAATC chr3L:3380633-3380753 40 3.42e-05 TTTTTAAAAA GCGCCTAG AAGCAGGCAA chr2R:7141858-7141978 44 3.42e-05 AGGTTTTTAT GTGGCTTA ATGACAGACT chr2L:19121088-19121208 62 3.42e-05 CAATAAATAT GTGGCTTA AATGTTTATG chr3L:6981921-6982041 18 5.25e-05 AATTTGGTAT GTGGCTGG TAGATTCAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCCTWA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:19074042-19074162 2.1e-06 111_[+4]_1 chr2L:18906772-18906892 2.1e-06 83_[+4]_29 chr2L:19884572-19884692 7.8e-06 73_[+4]_39 chr3L:1464548-1464668 7.8e-06 77_[+4]_35 chr3L:3851943-3852063 1.1e-05 59_[+4]_53 chr3L:19338336-19338456 1.1e-05 15_[+4]_97 chr3L:18349394-18349514 1.9e-05 101_[+4]_11 chr3R:21613013-21613133 1.9e-05 62_[+4]_50 chr3R:26900126-26900246 1.9e-05 17_[+4]_95 chr2L:15908565-15908685 2.1e-05 13_[+4]_99 chr3L:3380633-3380753 3.4e-05 39_[+4]_73 chr2R:7141858-7141978 3.4e-05 43_[+4]_69 chr2L:19121088-19121208 3.4e-05 61_[+4]_51 chr3L:6981921-6982041 5.3e-05 17_[+4]_95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCCTWA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGCCTWA width=8 seqs=14 chr3L:19074042-19074162 ( 112) GTGCCTTG 1 chr2L:18906772-18906892 ( 84) GTGCCTTG 1 chr2L:19884572-19884692 ( 74) GTGCCTTA 1 chr3L:1464548-1464668 ( 78) GTGCCTTA 1 chr3L:3851943-3852063 ( 60) GTGCCTCA 1 chr3L:19338336-19338456 ( 16) GTGCCTCA 1 chr3L:18349394-18349514 ( 102) GTGCCTAA 1 chr3R:21613013-21613133 ( 63) GTGCCTAA 1 chr3R:26900126-26900246 ( 18) GTGCCTAA 1 chr2L:15908565-15908685 ( 14) GCGCCTTA 1 chr3L:3380633-3380753 ( 40) GCGCCTAG 1 chr2R:7141858-7141978 ( 44) GTGGCTTA 1 chr2L:19121088-19121208 ( 62) GTGGCTTA 1 chr3L:6981921-6982041 ( 18) GTGGCTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCCTWA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8217 E= 4.9e+003 -1045 -1045 288 -1045 -1045 11 -1045 124 -1045 -1045 288 -1045 -1045 257 66 -1045 -1045 292 -1045 -1045 -1045 -1045 -1045 146 -36 11 -93 46 96 -1045 107 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCCTWA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 4.9e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.785714 0.214286 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.285714 0.142857 0.071429 0.500000 0.714286 0.000000 0.285714 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCCTWA MEME-4 regular expression -------------------------------------------------------------------------------- GTG[CG]CT[TA][AG] -------------------------------------------------------------------------------- Time 26.51 secs. ******************************************************************************** ******************************************************************************** MOTIF CYCCCTGG MEME-5 width = 8 sites = 2 llr = 28 E-value = 6.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYCCCTGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a5aaa::: probability G ::::::aa matrix T :5:::a:: bits 2.9 * *** ** 2.6 * *** ** 2.3 * *** ** 2.0 * *** ** Relative 1.8 * *** ** Entropy 1.5 * ****** (20.1 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCCCCTGG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCCTGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21296858-21296978 26 2.70e-07 CATACGCAAA CCCCCTGG AAAAGATGTG chr3L:295191-295311 85 1.01e-06 CCTGCAGTTT CTCCCTGG AACTTTcact -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCCTGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21296858-21296978 2.7e-07 25_[+5]_87 chr3L:295191-295311 1e-06 84_[+5]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCCTGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYCCCTGG width=8 seqs=2 chr3R:21296858-21296978 ( 26) CCCCCTGG 1 chr3L:295191-295311 ( 85) CTCCCTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCCTGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 6.4e+003 -765 291 -765 -765 -765 191 -765 46 -765 291 -765 -765 -765 291 -765 -765 -765 291 -765 -765 -765 -765 -765 145 -765 -765 287 -765 -765 -765 287 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCCTGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.4e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCCTGG MEME-5 regular expression -------------------------------------------------------------------------------- C[CT]CCCTGG -------------------------------------------------------------------------------- Time 32.71 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21296858-21296978 1.74e-06 14_[+2(7.98e-05)]_3_[+5(2.70e-07)]_\ 87 chrX:7095045-7095165 5.89e-01 120 chrX:6663000-6663120 7.15e-01 120 chr2R:10278144-10278264 7.89e-01 120 chr2L:5445980-5446100 9.77e-01 120 chr2L:10351286-10351406 1.02e-01 54_[+3(9.05e-05)]_58 chr3L:18227481-18227601 1.03e-01 100_[+3(1.39e-05)]_12 chrX:18533389-18533509 9.06e-01 120 chr2L:14023479-14023599 9.51e-01 120 chr3L:10391086-10391206 5.23e-01 120 chr3R:22220956-22221076 1.50e-02 120 chr2R:18963292-18963412 3.18e-01 120 chr2R:14969711-14969831 6.01e-01 120 chr2R:8242196-8242316 6.39e-04 87_[+3(9.57e-06)]_25 chr2R:13474949-13475069 3.00e-05 1_[+2(3.09e-06)]_1_[+3(1.62e-05)]_\ 102 chrX:7104577-7104697 3.51e-02 103_[+3(3.73e-06)]_9 chr3L:110084-110204 2.75e-01 120 chrX:20644113-20644233 3.47e-01 120 chr3L:5280107-5280227 9.15e-01 120 chrX:5970002-5970122 6.23e-01 120 chr2R:12020598-12020718 9.50e-01 120 chr2L:18906772-18906892 3.52e-03 83_[+4(2.11e-06)]_29 chr3R:6241362-6241482 2.89e-01 120 chr2R:16091904-16092024 8.50e-02 120 chr2L:12530081-12530201 1.00e+00 120 chr2R:23051766-23051886 4.12e-01 120 chr3R:22794095-22794215 9.54e-02 120 chr3L:19074042-19074162 5.10e-03 111_[+4(2.11e-06)]_1 chrX:3109014-3109134 8.82e-01 120 chr2R:14485484-14485604 3.31e-01 120 chrX:7539266-7539386 4.86e-01 120 chr3L:3873169-3873289 8.44e-01 120 chr3L:1464548-1464668 3.33e-04 17_[+3(3.82e-05)]_52_[+4(7.83e-06)]_\ 35 chr2R:22402866-22402986 1.31e-01 120 chr2R:20126748-20126868 6.44e-01 120 chr3R:17048998-17049118 9.27e-01 120 chrX:13307274-13307394 8.07e-01 120 chr2R:18325117-18325237 5.86e-02 120 chr2L:4286310-4286430 4.49e-01 120 chr2R:22384455-22384575 4.35e-04 78_[+1(4.81e-06)]_34 chrX:3455556-3455676 8.10e-01 120 chr2L:521461-521581 7.76e-01 120 chr2L:16533797-16533917 9.49e-01 120 chr3L:10428859-10428979 9.05e-01 120 chr3L:11443671-11443791 9.03e-01 120 chr3R:26968859-26968979 9.76e-01 120 chr2R:8759561-8759681 1.90e-01 120 chr3R:26968157-26968277 3.36e-01 120 chr2L:19121088-19121208 2.23e-01 61_[+4(3.42e-05)]_51 chr2L:16869121-16869241 1.00e+00 120 chr3R:19014927-19015047 5.97e-02 120 chr3L:815362-815482 1.76e-02 13_[+5(4.34e-05)]_99 chr2R:10439047-10439167 7.33e-01 120 chrX:17481688-17481808 8.63e-01 120 chr2R:14971155-14971275 1.93e-01 120 chr2R:23187220-23187340 2.58e-02 120 chr2R:12706009-12706129 9.84e-01 120 chr3L:15174962-15175082 9.25e-01 120 chr2L:13876790-13876910 6.46e-01 120 chr3R:32052329-32052449 2.50e-01 120 chr3R:22878587-22878707 8.56e-01 120 chrX:4581919-4582039 3.30e-01 120 chr3L:9042789-9042909 2.16e-01 120 chr3R:15650432-15650552 2.86e-01 120 chr3L:22665254-22665374 2.77e-01 120 chr3L:17009704-17009824 4.99e-02 120 chr3L:11278925-11279045 9.73e-01 120 chr3L:16825247-16825367 1.48e-01 120 chr2R:18273492-18273612 5.10e-01 120 chr3L:15693204-15693324 5.29e-01 120 chr3L:5994224-5994344 6.49e-01 120 chrX:17471726-17471846 4.32e-02 120 chr2L:7150893-7151013 4.67e-02 4_[+1(6.33e-06)]_108 chr2L:18871887-18872007 5.79e-01 120 chrX:3740391-3740511 4.77e-02 112_[+1(4.53e-06)] chr2R:24897738-24897858 7.60e-01 120 chr2L:19373930-19374050 9.88e-01 120 chr3L:7592237-7592357 2.67e-01 120 chrX:5085964-5086084 7.97e-06 89_[+2(1.06e-06)]_23 chrX:3745314-3745434 9.99e-01 120 chr3L:3786916-3787036 8.99e-01 120 chrX:9350400-9350520 1.00e+00 120 chr3L:16054249-16054369 9.55e-01 120 chr3L:15275605-15275725 6.00e-01 120 chr3R:28904315-28904435 9.68e-01 120 chr2R:23567423-23567543 3.87e-02 120 chr2L:5042225-5042345 1.49e-01 34_[+1(3.31e-05)]_78 chr2R:10541326-10541446 7.14e-02 120 chr2L:1646699-1646819 2.33e-01 120 chr3L:18102225-18102345 5.92e-01 120 chrX:17582096-17582216 7.72e-01 120 chr2L:9206554-9206674 5.42e-01 120 chr3R:26900126-26900246 9.38e-03 17_[+4(1.94e-05)]_95 chr3R:21834381-21834501 2.86e-01 120 chr2R:21909976-21910096 4.84e-03 33_[+3(7.09e-05)]_33_[+3(1.54e-05)]_\ 38 chrX:12547172-12547292 3.13e-02 120 chr2R:20590629-20590749 5.16e-05 22_[+1(1.72e-05)]_2_[+3(7.47e-06)]_\ 80 chrX:17229936-17230056 5.11e-01 120 chr3L:3449861-3449981 1.39e-03 104_[+4(6.72e-05)]_8 chr3L:16697168-16697288 9.82e-01 120 chr3L:19338336-19338456 5.01e-02 15_[+4(1.07e-05)]_97 chr3R:6008191-6008311 2.50e-06 49_[+2(6.04e-05)]_22_[+3(1.39e-05)]_\ 21_[+1(5.15e-05)]_4 chrX:8445007-8445127 8.53e-01 120 chr3R:30734736-30734856 3.38e-01 120 chr2L:7149042-7149162 1.01e-01 120 chrX:15618038-15618158 8.03e-02 120 chr2L:7566736-7566856 5.08e-01 120 chr3R:10449117-10449237 4.43e-01 120 chr2L:21573211-21573331 8.02e-01 120 chr3R:17955856-17955976 5.16e-01 120 chr3R:8964048-8964168 9.86e-01 120 chrX:12241135-12241255 7.00e-01 120 chr3L:7634929-7635049 3.56e-01 120 chrX:14622350-14622470 4.57e-02 75_[+4(7.81e-05)]_37 chr2L:17747238-17747358 8.52e-01 120 chrX:6615580-6615700 5.63e-02 120 chr3R:19093428-19093548 7.39e-03 87_[+1(3.28e-06)]_25 chrX:12225370-12225490 9.95e-01 120 chr3R:4311231-4311351 3.70e-01 120 chr3R:29717665-29717785 6.03e-01 120 chr2L:3100906-3101026 4.10e-01 120 chr3R:10354016-10354136 2.95e-01 120 chr2R:7141858-7141978 2.31e-02 43_[+4(3.42e-05)]_69 chr3L:15672964-15673084 1.42e-01 120 chr2R:17458974-17459094 6.15e-03 46_[+3(7.47e-06)]_66 chr2L:9996739-9996859 1.44e-02 120 chr3L:10767249-10767369 9.78e-01 120 chr3L:14166425-14166545 3.53e-01 120 chr3R:21594474-21594594 6.65e-01 120 chr2L:7541469-7541589 1.00e+00 120 chr3L:10350897-10351017 7.01e-03 61_[+3(9.05e-05)]_51 chr2R:6220001-6220121 4.67e-01 120 chr3R:10681716-10681836 3.49e-03 105_[+1(6.03e-06)]_7 chr3L:10428201-10428321 9.08e-01 120 chr3R:9344943-9345063 8.86e-01 120 chr3R:13448506-13448626 3.23e-01 120 chr3L:17404845-17404965 6.24e-02 24_[+2(7.98e-05)]_88 chr3L:517322-517442 1.83e-01 120 chr2L:2857898-2858018 3.64e-04 100_[+1(1.14e-07)]_12 chr3R:9159920-9160040 6.72e-01 120 chr2L:18648354-18648474 2.26e-01 120 chr3R:13549644-13549764 9.87e-01 120 chr2L:10543533-10543653 8.43e-01 120 chr3R:13793455-13793575 9.70e-01 120 chr3R:25445630-25445750 9.90e-01 120 chr3R:13907804-13907924 5.62e-01 120 chr3L:10951207-10951327 9.74e-01 120 chr3L:10337660-10337780 2.92e-01 120 chr3L:6885758-6885878 1.00e+00 120 chr3L:14328584-14328704 4.84e-01 120 chr3L:6157718-6157838 7.99e-01 120 chr2L:14024880-14025000 8.81e-01 120 chrX:17780390-17780510 3.49e-01 120 chr2R:9711856-9711976 9.17e-01 120 chr3R:29581610-29581730 4.12e-01 120 chr3R:14470765-14470885 6.61e-01 120 chr3L:5952189-5952309 5.34e-01 120 chr2L:14537645-14537765 9.33e-01 120 chr2L:1070491-1070611 5.61e-01 120 chr3R:25184101-25184221 5.17e-01 120 chrX:17782120-17782240 1.25e-02 47_[+2(1.79e-06)]_65 chr2L:3851416-3851536 8.73e-01 120 chr2L:7293583-7293703 1.32e-01 120 chrX:8125334-8125454 9.96e-01 120 chr3R:11852101-11852221 9.80e-01 120 chr2L:17588788-17588908 8.61e-01 120 chr3R:23921783-23921903 4.49e-02 120 chr3R:8849507-8849627 7.27e-01 120 chr3L:14961146-14961266 1.00e+00 120 chr2R:15134255-15134375 4.76e-03 63_[+3(2.96e-06)]_49 chr3L:295191-295311 2.76e-04 84_[+5(1.01e-06)]_28 chr3R:9494424-9494544 4.74e-01 120 chrX:18921064-18921184 9.80e-01 120 chr3L:11336524-11336644 2.08e-03 26_[+4(5.95e-05)]_86 chr3L:224290-224410 1.17e-05 71_[+1(8.65e-06)]_13_[+3(6.07e-05)]_\ 20 chr2R:19874588-19874708 4.77e-01 120 chr3L:3059368-3059488 1.91e-04 120 chr3R:21613013-21613133 1.97e-01 62_[+4(1.94e-05)]_50 chr3L:11291625-11291745 6.14e-01 120 chrX:5968241-5968361 8.97e-05 107_[+2(2.33e-06)]_5 chr2L:14562344-14562464 9.24e-01 120 chr3L:8951156-8951276 9.83e-01 120 chr3L:3380633-3380753 4.13e-03 39_[+4(3.42e-05)]_73 chrX:14743921-14744041 8.54e-01 120 chr2L:10752379-10752499 6.89e-04 1_[+3(2.26e-05)]_8_[+1(2.33e-05)]_\ 95 chr2L:9564639-9564759 3.31e-01 120 chr3R:7108145-7108265 4.39e-02 112_[+2(7.98e-05)] chr3L:18349394-18349514 5.88e-02 101_[+4(1.94e-05)]_11 chr3L:905111-905231 8.21e-01 120 chr2L:19884572-19884692 1.60e-03 73_[+4(7.83e-06)]_39 chr2R:5122245-5122365 2.54e-01 120 chr3R:23730030-23730150 4.04e-06 100_[+2(2.65e-07)]_12 chr3R:17231646-17231766 3.90e-04 68_[+1(1.17e-06)]_44 chr3R:29265232-29265352 3.67e-01 120 chr3R:13446628-13446748 2.45e-01 120 chr3R:29690565-29690685 3.60e-01 120 chr3L:18402749-18402869 1.00e+00 120 chr3L:6981921-6982041 4.67e-02 17_[+4(5.25e-05)]_95 chr3L:11429819-11429939 6.49e-01 120 chr3L:16760459-16760579 3.60e-02 120 chr3L:22277378-22277498 4.03e-01 120 chr2R:14161266-14161386 9.70e-01 120 chr2L:19059030-19059150 9.58e-01 120 chr3L:3851943-3852063 1.31e-02 59_[+4(1.07e-05)]_53 chrX:14634864-14634984 4.06e-01 120 chr3R:5660163-5660283 6.72e-01 120 chr3L:10893524-10893644 9.35e-01 120 chr3L:8763325-8763445 2.47e-01 120 chr3L:3875148-3875268 9.64e-01 120 chr2R:21364771-21364891 9.91e-01 120 chr3R:8955016-8955136 7.33e-01 120 chr3L:14363208-14363328 4.38e-01 120 chr2R:19860366-19860486 2.66e-01 120 chr2L:9595036-9595156 2.39e-01 120 chrX:3397010-3397130 3.41e-01 120 chr2R:17533784-17533904 5.65e-01 120 chrX:7703120-7703240 8.22e-01 120 chr3R:23969576-23969696 1.00e+00 120 chr2R:10681407-10681527 2.17e-01 120 chr3L:18272357-18272477 6.50e-01 120 chr3L:9028160-9028280 9.02e-02 109_[+1(7.96e-05)]_3 chr3R:23293552-23293672 7.22e-01 120 chr3L:3078528-3078648 1.25e-01 120 chrX:15890226-15890346 1.40e-01 4_[+3(3.41e-05)]_108 chr3L:3855277-3855397 9.18e-01 120 chr2L:14245633-14245753 9.35e-01 120 chr2L:13203423-13203543 7.62e-01 120 chr3L:16452464-16452584 2.77e-01 109_[+3(6.07e-05)]_3 chr2L:15908565-15908685 2.38e-01 13_[+4(2.14e-05)]_99 chr2L:21310260-21310380 1.08e-01 120 chrX:19225111-19225231 8.17e-01 120 chr2R:12727652-12727772 9.31e-01 120 chrX:5329431-5329551 2.38e-01 120 chrX:19371639-19371759 8.36e-03 85_[+1(2.29e-06)]_18_[+1(4.23e-05)]_\ 1 chr2R:15034864-15034984 2.18e-02 57_[+1(2.88e-06)]_55 chr2R:22677946-22678066 9.00e-01 120 chr2R:15322270-15322390 9.48e-01 120 chr3R:23297675-23297795 7.76e-01 120 chr3L:18250847-18250967 3.85e-01 120 chr3L:19898962-19899082 4.93e-01 120 chrX:13764500-13764620 1.48e-01 120 chr3R:8978848-8978968 6.38e-01 120 chr2L:7492036-7492156 3.16e-01 120 chrX:9899859-9899979 6.09e-01 120 chr2L:14701629-14701749 5.89e-02 120 chr2L:2374175-2374295 8.41e-01 120 chr2L:7270413-7270533 3.93e-01 120 chr3L:6817079-6817199 6.21e-03 6_[+3(2.96e-06)]_106 chr2R:19127961-19128081 3.02e-01 120 chr3L:14172672-14172792 2.39e-01 96_[+3(2.47e-05)]_16 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************