******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Sry-β.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:12020987-12021107 1.0000 120 chr3R:29512431-29512551 1.0000 120 chr3R:31703594-31703714 1.0000 120 chr2L:5443180-5443300 1.0000 120 chrX:12473350-12473470 1.0000 120 chrX:16816602-16816722 1.0000 120 chrX:12906983-12907103 1.0000 120 chr3R:17710592-17710712 1.0000 120 chr3L:1571561-1571681 1.0000 120 chrX:5542941-5543061 1.0000 120 chr2L:14508147-14508267 1.0000 120 chrX:11661593-11661713 1.0000 120 chr2L:2925771-2925891 1.0000 120 chrX:16072778-16072898 1.0000 120 chr3R:17343862-17343982 1.0000 120 chr3R:14011774-14011894 1.0000 120 chr3L:13135537-13135657 1.0000 120 chr2L:1470158-1470278 1.0000 120 chrX:9687324-9687444 1.0000 120 chrX:9390898-9391018 1.0000 120 chr3R:29554241-29554361 1.0000 120 chrX:9007339-9007459 1.0000 120 chr2R:10312820-10312940 1.0000 120 chrX:4912468-4912588 1.0000 120 chr3R:24051206-24051326 1.0000 120 chr2L:20940282-20940402 1.0000 120 chr2R:11382564-11382684 1.0000 120 chrX:2704180-2704300 1.0000 120 chr3R:22593616-22593736 1.0000 120 chr2R:21751793-21751913 1.0000 120 chr2L:9947868-9947988 1.0000 120 chr2R:15290605-15290725 1.0000 120 chr3L:12065171-12065291 1.0000 120 chr3L:15223240-15223360 1.0000 120 chr3L:15177245-15177365 1.0000 120 chrX:18867028-18867148 1.0000 120 chrX:8737588-8737708 1.0000 120 chr2L:21013258-21013378 1.0000 120 chr2L:17380675-17380795 1.0000 120 chr2L:16419764-16419884 1.0000 120 chr3R:30029733-30029853 1.0000 120 chrX:11573674-11573794 1.0000 120 chr3L:15109191-15109311 1.0000 120 chr3L:11472202-11472322 1.0000 120 chr2L:16848819-16848939 1.0000 120 chrX:4495023-4495143 1.0000 120 chr3R:6277941-6278061 1.0000 120 chr3L:11438907-11439027 1.0000 120 chr3R:21542141-21542261 1.0000 120 chrX:13280909-13281029 1.0000 120 chr3L:18221108-18221228 1.0000 120 chrX:10290464-10290584 1.0000 120 chr2R:22464396-22464516 1.0000 120 chrX:2032296-2032416 1.0000 120 chr3L:15458575-15458695 1.0000 120 chr3R:6278180-6278300 1.0000 120 chr3R:29082604-29082724 1.0000 120 chr2R:13235313-13235433 1.0000 120 chr2R:16203252-16203372 1.0000 120 chrX:8661944-8662064 1.0000 120 chr2L:11808467-11808587 1.0000 120 chr2L:6824457-6824577 1.0000 120 chr2L:15370919-15371039 1.0000 120 chr3R:8330742-8330862 1.0000 120 chr3R:29583182-29583302 1.0000 120 chrX:15737273-15737393 1.0000 120 chrX:16427938-16428058 1.0000 120 chrX:17278418-17278538 1.0000 120 chr3R:10646768-10646888 1.0000 120 chr2L:11032393-11032513 1.0000 120 chr2L:19111673-19111793 1.0000 120 chr2L:18504533-18504653 1.0000 120 chrX:16428140-16428260 1.0000 120 chrX:20244021-20244141 1.0000 120 chr2L:15499963-15500083 1.0000 120 chrX:6779933-6780053 1.0000 120 chrX:16154520-16154640 1.0000 120 chr2L:12671257-12671377 1.0000 120 chrX:19299485-19299605 1.0000 120 chr3R:30222441-30222561 1.0000 120 chr3L:8851225-8851345 1.0000 120 chr3R:22889837-22889957 1.0000 120 chr3R:29263379-29263499 1.0000 120 chrX:9118465-9118585 1.0000 120 chrX:11572441-11572561 1.0000 120 chrX:18973013-18973133 1.0000 120 chr2R:21733907-21734027 1.0000 120 chrX:6077719-6077839 1.0000 120 chr3R:9570191-9570311 1.0000 120 chrX:15737487-15737607 1.0000 120 chrX:19160761-19160881 1.0000 120 chr3L:4188258-4188378 1.0000 120 chr2R:15702881-15703001 1.0000 120 chr3R:6419681-6419801 1.0000 120 chrX:8635100-8635220 1.0000 120 chr3L:9842198-9842318 1.0000 120 chr2R:9439701-9439821 1.0000 120 chr2R:16731964-16732084 1.0000 120 chr3L:10507189-10507309 1.0000 120 chr2R:23172180-23172300 1.0000 120 chrX:13280706-13280826 1.0000 120 chr3L:18257793-18257913 1.0000 120 chr3R:6766815-6766935 1.0000 120 chr2L:7200324-7200444 1.0000 120 chr3R:4394805-4394925 1.0000 120 chr3R:8739493-8739613 1.0000 120 chrX:18870084-18870204 1.0000 120 chrX:2704407-2704527 1.0000 120 chrX:12100576-12100696 1.0000 120 chr3L:11439127-11439247 1.0000 120 chr3L:11062582-11062702 1.0000 120 chr3L:21041421-21041541 1.0000 120 chr3R:12128469-12128589 1.0000 120 chr4:261824-261944 1.0000 120 chrX:6986034-6986154 1.0000 120 chrX:13301253-13301373 1.0000 120 chr3L:7910879-7910999 1.0000 120 chrX:1865804-1865924 1.0000 120 chr2L:21003634-21003754 1.0000 120 chr3R:27922338-27922458 1.0000 120 chrX:8661745-8661865 1.0000 120 chr3R:22889635-22889755 1.0000 120 chrX:1142728-1142848 1.0000 120 chr3L:15203261-15203381 1.0000 120 chrX:4380469-4380589 1.0000 120 chrX:10904814-10904934 1.0000 120 chr3R:30029939-30030059 1.0000 120 chrX:2032510-2032630 1.0000 120 chrX:11917455-11917575 1.0000 120 chr2R:11360499-11360619 1.0000 120 chr3R:29764771-29764891 1.0000 120 chr3R:30475915-30476035 1.0000 120 chr2R:13546384-13546504 1.0000 120 chr2L:21013460-21013580 1.0000 120 chr3L:8851426-8851546 1.0000 120 chrX:8725190-8725310 1.0000 120 chr2L:11503752-11503872 1.0000 120 chr3L:15177446-15177566 1.0000 120 chr3L:7371431-7371551 1.0000 120 chrX:12480631-12480751 1.0000 120 chr2L:15752161-15752281 1.0000 120 chrX:20389712-20389832 1.0000 120 chrX:12664247-12664367 1.0000 120 chrX:3549401-3549521 1.0000 120 chr3L:4384113-4384233 1.0000 120 chr2L:10801511-10801631 1.0000 120 chr3L:12065399-12065519 1.0000 120 chr3L:11588350-11588470 1.0000 120 chr3R:12858005-12858125 1.0000 120 chrX:6068835-6068955 1.0000 120 chr3L:21830289-21830409 1.0000 120 chrX:13301456-13301576 1.0000 120 chr3L:17750922-17751042 1.0000 120 chr2R:18292066-18292186 1.0000 120 chr3L:18229125-18229245 1.0000 120 chrX:2738812-2738932 1.0000 120 chr2L:5044273-5044393 1.0000 120 chrX:17681794-17681914 1.0000 120 chrX:22514865-22514985 1.0000 120 chr3R:19890419-19890539 1.0000 120 chrX:12901360-12901480 1.0000 120 chr3L:11344479-11344599 1.0000 120 chrX:20243818-20243938 1.0000 120 chr2R:6759163-6759283 1.0000 120 chr2L:10650631-10650751 1.0000 120 chr2L:15371128-15371248 1.0000 120 chrX:4971801-4971921 1.0000 120 chr2R:7992008-7992128 1.0000 120 chr3L:9033006-9033126 1.0000 120 chr2R:24047243-24047363 1.0000 120 chr2R:11951501-11951621 1.0000 120 chr3L:10165655-10165775 1.0000 120 chr3R:21691273-21691393 1.0000 120 chrX:12901150-12901270 1.0000 120 chrX:18869884-18870004 1.0000 120 chr3R:26550997-26551117 1.0000 120 chr3L:11471998-11472118 1.0000 120 chrX:20448954-20449074 1.0000 120 chr3L:11381551-11381671 1.0000 120 chrX:10070908-10071028 1.0000 120 chr3R:23037473-23037593 1.0000 120 chr2R:16731747-16731867 1.0000 120 chr3L:11588555-11588675 1.0000 120 chrX:23007053-23007173 1.0000 120 chr2L:18922822-18922942 1.0000 120 chr3R:10646973-10647093 1.0000 120 chr2L:10364347-10364467 1.0000 120 chrX:20243619-20243739 1.0000 120 chrX:12192850-12192970 1.0000 120 chrX:13444937-13445057 1.0000 120 chr3L:11381752-11381872 1.0000 120 chr3L:5534381-5534501 1.0000 120 chrX:10758170-10758290 1.0000 120 chrX:18973212-18973332 1.0000 120 chr2L:4465048-4465168 1.0000 120 chr3L:11443595-11443715 1.0000 120 chr2R:13052190-13052310 1.0000 120 chrX:21351300-21351420 1.0000 120 chr2R:9136689-9136809 1.0000 120 chr3R:16009251-16009371 1.0000 120 chrX:16835885-16836005 1.0000 120 chr3R:6460770-6460890 1.0000 120 chrX:1135124-1135244 1.0000 120 chr2L:15340089-15340209 1.0000 120 chr3R:6918859-6918979 1.0000 120 chrX:17657190-17657310 1.0000 120 chr2L:15471296-15471416 1.0000 120 chr3L:11449824-11449944 1.0000 120 chr3L:2205396-2205516 1.0000 120 chr2R:13235059-13235179 1.0000 120 chrX:10841873-10841993 1.0000 120 chr3R:28811695-28811815 1.0000 120 chrX:10758406-10758526 1.0000 120 chr3L:11443797-11443917 1.0000 120 chrX:16154722-16154842 1.0000 120 chr3L:15684604-15684724 1.0000 120 chr3L:10165860-10165980 1.0000 120 chr3R:10815161-10815281 1.0000 120 chrX:13445715-13445835 1.0000 120 chr3R:22666503-22666623 1.0000 120 chr3L:4372326-4372446 1.0000 120 chr3L:17849622-17849742 1.0000 120 chr3L:14999383-14999503 1.0000 120 chr3R:22885720-22885840 1.0000 120 chr3L:5785652-5785772 1.0000 120 chr3L:21041163-21041283 1.0000 120 chrX:19897926-19898046 1.0000 120 chr3R:24931937-24932057 1.0000 120 chrX:9687108-9687228 1.0000 120 chr3L:19096190-19096310 1.0000 120 chr2L:10687473-10687593 1.0000 120 chr3L:21688751-21688871 1.0000 120 chr3L:178102-178222 1.0000 120 chr3R:23037673-23037793 1.0000 120 chr2R:6102367-6102487 1.0000 120 chrX:8725391-8725511 1.0000 120 chr3R:21544009-21544129 1.0000 120 chr3L:22351656-22351776 1.0000 120 chr3L:15772433-15772553 1.0000 120 chrX:6775739-6775859 1.0000 120 chr2R:21719981-21720101 1.0000 120 chr2L:13783631-13783751 1.0000 120 chrX:6986236-6986356 1.0000 120 chrX:1142928-1143048 1.0000 120 chr2L:15907740-15907860 1.0000 120 chr2L:17756935-17757055 1.0000 120 chr2R:11471040-11471160 1.0000 120 chr2R:15703082-15703202 1.0000 120 chr3L:4372526-4372646 1.0000 120 chrX:17625790-17625910 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Sry-β/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Sry-β.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.33 C 0.172 G 0.168 T 0.33 Background letter frequencies (from file dataset with add-one prior applied): A 0.33 C 0.172 G 0.168 T 0.33 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAKCACTG MEME-1 width = 8 sites = 58 llr = 528 E-value = 3.0e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAKCACTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a1:7::: pos.-specific C a::9:9:: probability G ::4:2::a matrix T ::4111a: bits 2.6 * * 2.3 * * 2.1 * * * 1.8 * * * * Relative 1.5 ** * * * Entropy 1.3 ** * *** (13.1 bits) 1.0 ** * *** 0.8 ** * *** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CATCACTG consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAKCACTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1142928-1143048 69 5.16e-06 GCCAGCTCGA CAGCACTG AACTAGAGTG chrX:13445715-13445835 79 5.16e-06 GCTAAGTAAG CAGCACTG GCGGGTCGAC chrX:10758406-10758526 56 5.16e-06 GCCATGTGTT CAGCACTG TAGAAAGGCT chrX:1142728-1142848 42 5.16e-06 GCCAGTTCGA CAGCACTG AACTAGAGTG chr2R:22464396-22464516 113 5.16e-06 GCTAATGGGT CAGCACTG chrX:4495023-4495143 9 5.16e-06 AAAGGAGC CAGCACTG CACGGTTGGC chrX:16835885-16836005 57 7.79e-06 GAAAAGCTAG CAGCGCTG CAAAAATTAT chr2L:5044273-5044393 54 7.79e-06 TTTCAGAGAG CAGCGCTG CGCGACGCCC chrX:8725190-8725310 26 7.79e-06 AGTTTATAGA CAGCGCTG GCTATTTTCA chr2R:15703082-15703202 13 1.79e-05 CTTATTTGCT CATCACTG AACCCACCCT chr3L:15772433-15772553 79 1.79e-05 CTGTAAATGC CATCACTG TCTCTCGAAT chr3R:24931937-24932057 33 1.79e-05 GTGATTTTCG CATCACTG CCGGCTCCAC chr3L:10165860-10165980 52 1.79e-05 TAGAATTCAG CATCACTG TCTCTCCAGG chr3L:15684604-15684724 98 1.79e-05 GCTAACTAGT CATCACTG TTAATATGAT chrX:16154722-16154842 17 1.79e-05 GCCAATTTGG CATCACTG TCAAGGATCC chr3L:11443797-11443917 33 1.79e-05 TAAAATTCGA CATCACTG GGCGGCGGTA chrX:12480631-12480751 47 1.79e-05 TTCTTTGTGC CATCACTG TGGTCGTTCG chr3L:15177446-15177566 28 1.79e-05 GCCAAGGCGA CATCACTG GCGTGCATGA chr3R:12128469-12128589 106 1.79e-05 GCCAGATAAG CATCACTG ATCGCAT chr3L:18257793-18257913 86 1.79e-05 GCCAACTTGG CATCACTG TCAGCACACT chr3L:9842198-9842318 108 1.79e-05 GCTAAATTAC CATCACTG CCCGG chr2R:21733907-21734027 100 1.79e-05 TCCAGATGTG CATCACTG ATTGGGGAGA chr2L:11032393-11032513 113 1.79e-05 TGTTTTTGGC CATCACTG chr3L:15458575-15458695 96 1.79e-05 GCTGGTTTTG CATCACTG ACCAAACAAT chr2R:15290605-15290725 82 1.79e-05 GCTATATTGG CATCACTG AAGCGCGCGT chr3R:29554241-29554361 96 1.79e-05 CTATCGCAGT CATCACTG CACGCACGCA chrX:12020987-12021107 59 1.79e-05 AGCTAGCAGA CATCACTG TCCGATAACC chr2R:18292066-18292186 108 2.31e-05 CAAGGCACGT CATCGCTG GCAGA chrX:11572441-11572561 11 2.31e-05 TGCCAACACC CATCGCTG ATCCAGTGAT chr2R:21751793-21751913 88 2.31e-05 TACTTGAAGA CATCGCTG GAGGCGCCTC chr3L:4372526-4372646 54 3.32e-05 AATCAATTGC CAACACTG GCTTTAAACC chr2L:4465048-4465168 78 3.32e-05 CTCACGCTGC CAACACTG GCCATTTCTC chr2L:10364347-10364467 96 3.32e-05 CAACAGTTGG CAACACTG CGGCACAGTA chr3L:11588555-11588675 15 3.32e-05 TCCAAACCTG CAACACTG TATGTGCATG chrX:2032510-2032630 17 3.32e-05 CAAAACCTGG CAACACTG ACGGTCGCAG chr3L:11439127-11439247 28 3.32e-05 TTTCCAATGG CAACACTG AGTCGTATCT chrX:6077719-6077839 86 3.32e-05 TCTCCTTAAA CAACACTG AACGCAAGCG chr3L:15109191-15109311 81 3.32e-05 GCCAAGTTGG CAACACTG ACAATGACTC chr2L:19111673-19111793 108 4.35e-05 GCTGAACCGA CAGCTCTG GAGGC chrX:18973212-18973332 24 5.35e-05 GCCAAGTGGC CAGTACTG TTTCCCAACG chr3L:19096190-19096310 22 5.85e-05 GCGAGAAGAC CAGTGCTG CAAAACACCA chrX:9687108-9687228 4 5.85e-05 GAA CAGTGCTG TCATTGTGGC chrX:18869884-18870004 49 5.85e-05 CTCTTTCGCC CAGTGCTG CCAATTTGGC chrX:12901150-12901270 91 5.85e-05 GCACTGAAGC CAGTGCTG TTTCTTTGGC chr3R:29764771-29764891 16 5.85e-05 GGTTGATAGG CAGTGCTG AGCGATTCAG chr2L:21013258-21013378 8 5.85e-05 TGCCACA CAGTGCTG TTAATATAGC chr2R:9136689-9136809 100 6.86e-05 GCCGGATGAG CATCTCTG AACCCAATTG chr3R:10646973-10647093 63 6.86e-05 CTGAATCCAC CATCTCTG CATCATCACA chr2R:11382564-11382684 89 6.86e-05 GATGCCAACT CATCTCTG GCACTTGAAT chrX:23007053-23007173 71 1.01e-04 ATTTTAATGT CAGCATTG TATGAGATAA chr3L:10165655-10165775 65 1.01e-04 TTATTCTCTT CAGCATTG GATTGGATAT chr3L:7371431-7371551 105 1.01e-04 TCCAAATTGC CAGCATTG GCGGCCAT chr3R:30029939-30030059 67 1.01e-04 GCTGAACAAC CAGCCCTG AGCAGTGCTC chr2R:9439701-9439821 46 1.06e-04 AAACAGAAAA CAGCACAG TGTCAGCTAG chrX:19299485-19299605 89 1.06e-04 GCTAGATGGG CAGCACAG CTGCTGAGTC chr2L:21003634-21003754 3 1.21e-04 AT CAGCGTTG CGAGGTAGCA chr2L:18504533-18504653 93 1.21e-04 ACAAGTGAAT CATTGCTG GTAAAGTGAA chrX:13444937-13445057 111 1.46e-04 CGTATACTTG CATCATTG TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAKCACTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1142928-1143048 5.2e-06 68_[+1]_44 chrX:13445715-13445835 5.2e-06 78_[+1]_34 chrX:10758406-10758526 5.2e-06 55_[+1]_57 chrX:1142728-1142848 5.2e-06 41_[+1]_71 chr2R:22464396-22464516 5.2e-06 112_[+1] chrX:4495023-4495143 5.2e-06 8_[+1]_104 chrX:16835885-16836005 7.8e-06 56_[+1]_56 chr2L:5044273-5044393 7.8e-06 53_[+1]_59 chrX:8725190-8725310 7.8e-06 25_[+1]_87 chr2R:15703082-15703202 1.8e-05 12_[+1]_100 chr3L:15772433-15772553 1.8e-05 78_[+1]_34 chr3R:24931937-24932057 1.8e-05 32_[+1]_80 chr3L:10165860-10165980 1.8e-05 51_[+1]_61 chr3L:15684604-15684724 1.8e-05 97_[+1]_15 chrX:16154722-16154842 1.8e-05 16_[+1]_96 chr3L:11443797-11443917 1.8e-05 32_[+1]_80 chrX:12480631-12480751 1.8e-05 46_[+1]_66 chr3L:15177446-15177566 1.8e-05 27_[+1]_85 chr3R:12128469-12128589 1.8e-05 105_[+1]_7 chr3L:18257793-18257913 1.8e-05 85_[+1]_27 chr3L:9842198-9842318 1.8e-05 107_[+1]_5 chr2R:21733907-21734027 1.8e-05 99_[+1]_13 chr2L:11032393-11032513 1.8e-05 112_[+1] chr3L:15458575-15458695 1.8e-05 95_[+1]_17 chr2R:15290605-15290725 1.8e-05 81_[+1]_31 chr3R:29554241-29554361 1.8e-05 95_[+1]_17 chrX:12020987-12021107 1.8e-05 58_[+1]_54 chr2R:18292066-18292186 2.3e-05 107_[+1]_5 chrX:11572441-11572561 2.3e-05 10_[+1]_102 chr2R:21751793-21751913 2.3e-05 87_[+1]_25 chr3L:4372526-4372646 3.3e-05 53_[+1]_59 chr2L:4465048-4465168 3.3e-05 77_[+1]_35 chr2L:10364347-10364467 3.3e-05 95_[+1]_17 chr3L:11588555-11588675 3.3e-05 14_[+1]_98 chrX:2032510-2032630 3.3e-05 16_[+1]_96 chr3L:11439127-11439247 3.3e-05 27_[+1]_85 chrX:6077719-6077839 3.3e-05 85_[+1]_27 chr3L:15109191-15109311 3.3e-05 80_[+1]_32 chr2L:19111673-19111793 4.4e-05 107_[+1]_5 chrX:18973212-18973332 5.3e-05 23_[+1]_89 chr3L:19096190-19096310 5.8e-05 21_[+1]_91 chrX:9687108-9687228 5.8e-05 3_[+1]_109 chrX:18869884-18870004 5.8e-05 48_[+1]_64 chrX:12901150-12901270 5.8e-05 90_[+1]_22 chr3R:29764771-29764891 5.8e-05 15_[+1]_97 chr2L:21013258-21013378 5.8e-05 7_[+1]_105 chr2R:9136689-9136809 6.9e-05 99_[+1]_13 chr3R:10646973-10647093 6.9e-05 62_[+1]_50 chr2R:11382564-11382684 6.9e-05 88_[+1]_24 chrX:23007053-23007173 0.0001 70_[+1]_42 chr3L:10165655-10165775 0.0001 64_[+1]_48 chr3L:7371431-7371551 0.0001 104_[+1]_8 chr3R:30029939-30030059 0.0001 66_[+1]_46 chr2R:9439701-9439821 0.00011 45_[+1]_67 chrX:19299485-19299605 0.00011 88_[+1]_24 chr2L:21003634-21003754 0.00012 2_[+1]_110 chr2L:18504533-18504653 0.00012 92_[+1]_20 chrX:13444937-13445057 0.00015 110_[+1]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAKCACTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAKCACTG width=8 seqs=58 chrX:1142928-1143048 ( 69) CAGCACTG 1 chrX:13445715-13445835 ( 79) CAGCACTG 1 chrX:10758406-10758526 ( 56) CAGCACTG 1 chrX:1142728-1142848 ( 42) CAGCACTG 1 chr2R:22464396-22464516 ( 113) CAGCACTG 1 chrX:4495023-4495143 ( 9) CAGCACTG 1 chrX:16835885-16836005 ( 57) CAGCGCTG 1 chr2L:5044273-5044393 ( 54) CAGCGCTG 1 chrX:8725190-8725310 ( 26) CAGCGCTG 1 chr2R:15703082-15703202 ( 13) CATCACTG 1 chr3L:15772433-15772553 ( 79) CATCACTG 1 chr3R:24931937-24932057 ( 33) CATCACTG 1 chr3L:10165860-10165980 ( 52) CATCACTG 1 chr3L:15684604-15684724 ( 98) CATCACTG 1 chrX:16154722-16154842 ( 17) CATCACTG 1 chr3L:11443797-11443917 ( 33) CATCACTG 1 chrX:12480631-12480751 ( 47) CATCACTG 1 chr3L:15177446-15177566 ( 28) CATCACTG 1 chr3R:12128469-12128589 ( 106) CATCACTG 1 chr3L:18257793-18257913 ( 86) CATCACTG 1 chr3L:9842198-9842318 ( 108) CATCACTG 1 chr2R:21733907-21734027 ( 100) CATCACTG 1 chr2L:11032393-11032513 ( 113) CATCACTG 1 chr3L:15458575-15458695 ( 96) CATCACTG 1 chr2R:15290605-15290725 ( 82) CATCACTG 1 chr3R:29554241-29554361 ( 96) CATCACTG 1 chrX:12020987-12021107 ( 59) CATCACTG 1 chr2R:18292066-18292186 ( 108) CATCGCTG 1 chrX:11572441-11572561 ( 11) CATCGCTG 1 chr2R:21751793-21751913 ( 88) CATCGCTG 1 chr3L:4372526-4372646 ( 54) CAACACTG 1 chr2L:4465048-4465168 ( 78) CAACACTG 1 chr2L:10364347-10364467 ( 96) CAACACTG 1 chr3L:11588555-11588675 ( 15) CAACACTG 1 chrX:2032510-2032630 ( 17) CAACACTG 1 chr3L:11439127-11439247 ( 28) CAACACTG 1 chrX:6077719-6077839 ( 86) CAACACTG 1 chr3L:15109191-15109311 ( 81) CAACACTG 1 chr2L:19111673-19111793 ( 108) CAGCTCTG 1 chrX:18973212-18973332 ( 24) CAGTACTG 1 chr3L:19096190-19096310 ( 22) CAGTGCTG 1 chrX:9687108-9687228 ( 4) CAGTGCTG 1 chrX:18869884-18870004 ( 49) CAGTGCTG 1 chrX:12901150-12901270 ( 91) CAGTGCTG 1 chr3R:29764771-29764891 ( 16) CAGTGCTG 1 chr2L:21013258-21013378 ( 8) CAGTGCTG 1 chr2R:9136689-9136809 ( 100) CATCTCTG 1 chr3R:10646973-10647093 ( 63) CATCTCTG 1 chr2R:11382564-11382684 ( 89) CATCTCTG 1 chrX:23007053-23007173 ( 71) CAGCATTG 1 chr3L:10165655-10165775 ( 65) CAGCATTG 1 chr3L:7371431-7371551 ( 105) CAGCATTG 1 chr3R:30029939-30030059 ( 67) CAGCCCTG 1 chr2R:9439701-9439821 ( 46) CAGCACAG 1 chrX:19299485-19299605 ( 89) CAGCACAG 1 chr2L:21003634-21003754 ( 3) CAGCGTTG 1 chr2L:18504533-18504653 ( 93) CATTGCTG 1 chrX:13444937-13445057 ( 111) CATCATTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAKCACTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1759 E= 3.0e-034 -1250 254 -1250 -1250 160 -1250 -1250 -1250 -126 -1250 130 44 -1250 232 -1250 -126 103 -332 53 -226 -1250 241 -1250 -193 -326 -1250 -1250 155 -1250 -1250 258 -1250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAKCACTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 3.0e-034 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.137931 0.000000 0.413793 0.448276 0.000000 0.862069 0.000000 0.137931 0.672414 0.017241 0.241379 0.068966 0.000000 0.913793 0.000000 0.086207 0.034483 0.000000 0.000000 0.965517 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAKCACTG MEME-1 regular expression -------------------------------------------------------------------------------- CA[TG]C[AG]CTG -------------------------------------------------------------------------------- Time 7.45 secs. ******************************************************************************** ******************************************************************************** MOTIF WMTAGCYA MEME-2 width = 8 sites = 134 llr = 905 E-value = 7.5e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif WMTAGCYA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4428:::a pos.-specific C :41::a4: probability G 1::2a::: matrix T 527:::6: bits 2.6 ** 2.3 ** 2.1 ** 1.8 ** Relative 1.5 ** Entropy 1.3 ** * (9.7 bits) 1.0 ***** 0.8 ***** 0.5 ****** 0.3 ******** 0.0 -------- Multilevel TATAGCTA consensus ACA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMTAGCYA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:2205396-2205516 83 1.01e-05 TTGGCTATTT TCTAGCCA GAGGTAACAA chr4:261824-261944 50 1.01e-05 TACTAGTATT TCTAGCCA AAGTGGCAGC chrX:15737273-15737393 96 1.01e-05 TGTCGATTAA TCTAGCCA TTTTTTTAAA chrX:12906983-12907103 81 1.01e-05 GTCGATAGCT TCTAGCCA AGTTAAGTAA chr2R:6102367-6102487 102 3.97e-05 ATCTAGGTTT TCTAGCTA TTTATTGGCT chrX:9687108-9687228 55 3.97e-05 TTATTCATTA TCTAGCTA TCTTTTCGGA chr3R:22666503-22666623 56 3.97e-05 AATTCAGTTT TCTAGCTA GCTTTTTGAA chrX:13445715-13445835 43 3.97e-05 GGCTGGAAAA ACTAGCCA GAGTTGTCGG chr2R:13235059-13235179 12 3.97e-05 TCGTCTGCTT TCTAGCTA CGATTCTTCA chr3R:23037473-23037593 43 3.97e-05 TCCAAAAAAA ACTAGCCA AGCATTATAT chr3L:11471998-11472118 6 3.97e-05 TCAGC TCTAGCTA CTTTTGCAGT chrX:8725190-8725310 9 3.97e-05 GATGCTCA TCTAGCTA GTTTATAGAC chrX:1865804-1865924 68 3.97e-05 TTTTCCGGCA TCTAGCTA GTGCTGTTCG chr3L:18257793-18257913 72 3.97e-05 ACTCTATGGA ACTAGCCA ACTTGGCATC chr2L:19111673-19111793 85 3.97e-05 ATTTCTCAAA ACTAGCCA GATTGGCTGA chr3R:21544009-21544129 76 5.92e-05 TTGGTTAATT ACTAGCTA ACTTTTTGTA chrX:20243619-20243739 81 5.92e-05 TAGCTAGGAA ACTAGCTA AATCATTGGC chr2L:6824457-6824577 42 5.92e-05 TTAATCTTTC ACTAGCTA GATGCAGACA chr3L:15458575-15458695 71 5.92e-05 CTATTCACTA ACTAGCTA TTAAATCGCT chrX:1142928-1143048 27 8.38e-05 ATCCAGCATA TATAGCCA ACATTTAGCT chrX:16154722-16154842 3 8.38e-05 AA TATAGCCA ATTTGGCATC chr3L:11443797-11443917 14 8.38e-05 TGTTTAGATT TATAGCCA TTAAAATTCG chr2L:15471296-15471416 20 8.38e-05 TAGGAATCCT GCTAGCCA TACTTAAGCA chrX:17657190-17657310 105 8.38e-05 TTGGCTAATT TATAGCCA GATCATGT chrX:12192850-12192970 58 8.38e-05 TTGGCTGTTT TATAGCCA ACGGCAAATG chr3L:10165655-10165775 15 8.38e-05 TCAGCCAGTT TATAGCCA TTTTACAGGG chr3R:22593616-22593736 97 8.38e-05 ATAGCTATAA GCTAGCCA ACTGGTCATC chr2R:11471040-11471160 24 1.50e-04 TGGTAGCAGG AATAGCCA CATCTACACT chr3L:10165860-10165980 36 1.50e-04 TCTTTATATA TATAGCTA GAATTCAGCA chrX:10758406-10758526 42 1.50e-04 TTTGCATTAA AATAGCCA TGTGTTCAGC chr2L:15340089-15340209 28 1.50e-04 CTGCTGTAGA TATAGCTA TTTTTAGCGG chr2R:13052190-13052310 57 1.50e-04 CTGGCGTTTT TATAGCTA GGTCTACATA chrX:10758170-10758290 61 1.50e-04 CGTACATATA TATAGCTA GAAAATATAA chr2L:10364347-10364467 16 1.50e-04 TATTTTCCCA GCTAGCTA GCTTTTGTTT chr2R:7992008-7992128 75 1.50e-04 GATCTGATGT GCTAGCTA TTTTAAAAAA chr2L:5044273-5044393 108 1.50e-04 AACCAAACAA AATAGCCA AAGCA chr3L:21830289-21830409 37 1.50e-04 GGGGTATTCA GCTAGCTA TTTCATAGCT chrX:3549401-3549521 73 1.50e-04 AAAATTGACA GCTAGCTA ATTGATAAAA chr3L:15177446-15177566 14 1.50e-04 ACTAGTTAAA AATAGCCA AGGCGACATC chr3R:22889635-22889755 29 1.50e-04 AATGTCCAAA TATAGCTA TTTTCCTATG chr3R:27922338-27922458 31 1.50e-04 TTAGCTACTT TATAGCTA TATAAACGGA chr3L:7910879-7910999 39 1.50e-04 TACTTTCTTT TATAGCTA CAACTCCATG chrX:6779933-6780053 106 1.50e-04 CAGAAAAAAA AATAGCCA AATTGGC chrX:17278418-17278538 50 1.50e-04 CTAAAGAAAA TATAGCTA GATTTTCTAT chr3R:8330742-8330862 103 1.50e-04 CTAGCTGGAA AATAGCCA GTTTCACAGC chr2L:15370919-15371039 65 1.50e-04 TTTCCAATTA GCTAGCTA TCTTGCGAGC chrX:10290464-10290584 29 1.50e-04 GTTAGTTAAC GCTAGCTA TTTCTATTTC chrX:18867028-18867148 90 1.50e-04 TTGGCGGGAA AATAGCCA AAGAGCTAGC chr3R:14011774-14011894 103 1.50e-04 GCAGCTGAAA AATAGCCA TATTGTCAGC chr3R:17343862-17343982 15 1.50e-04 ACAATATAAC AATAGCCA CTAAAAGTTA chr3R:23037673-23037793 47 1.93e-04 TACCTTGAAA AATAGCTA AATTCGAGAG chr3L:15684604-15684724 84 1.93e-04 TGTTCATTTA AATAGCTA ACTAGTCATC chrX:10070908-10071028 78 1.93e-04 TGCTCAAAAG AATAGCTA AAAGGAATAT chr2L:14508147-14508267 108 1.93e-04 CATTTGAATA AATAGCTA AAATA chrX:17625790-17625910 46 2.08e-04 TCCAGTCAAA TCTGGCTA CTCAACTGGA chrX:11917455-11917575 10 2.08e-04 AGATGATCA TCTGGCTA TAACGAGCGG chrX:8661745-8661865 56 2.08e-04 GACCTTCAAG TCTGGCTA TTTTTTTTAG chrX:12100576-12100696 19 2.08e-04 CTGGGTTTAT TCTGGCTA AAAACTAGAA chr2R:23172180-23172300 22 2.08e-04 GAGCTGCGAA TCTGGCTA TTTTCAGGCA chrX:6986236-6986356 112 2.18e-04 GACCTCTGAA ACTGGCTA G chr3L:17750922-17751042 13 2.18e-04 TTTAGACCAA ACTGGCTA GTTAGCCAGG chrX:1135124-1135244 108 2.38e-04 AAAAGCGACA GATAGCCA GGAGT chrX:6068835-6068955 70 2.38e-04 TTGGCTATTT TCAAGCCA GATTGACAGT chrX:11572441-11572561 65 2.38e-04 CTGGCTCTTT TCAAGCCA AAACCTTTTA chrX:16427938-16428058 13 2.38e-04 TAGGCGGGTT TCAAGCCA GGTATTTCAA chr2R:24047243-24047363 45 2.87e-04 GAAATTTAGC ACAAGCCA CCTTCGTCCT chrX:4380469-4380589 68 2.87e-04 AAAAAAAAAA TCAAGCTA AGAACACATT chr2L:15499963-15500083 41 2.87e-04 ATTCCTCTGA GATAGCTA TCTTACAATT chr2R:21719981-21720101 41 3.38e-04 CTAGCTCCTT TTTAGCCA AATTAATTAT chr2L:10687473-10687593 54 3.38e-04 TTACTTATTG TTTAGCCA TTTAAAAATA chrX:17681794-17681914 15 3.38e-04 TGACCATCAT TTTAGCCA TTAGTTGGTT chr3R:12128469-12128589 53 3.38e-04 ATTCAGTAGT GCTGGCCA ACTTACAAGC chr2L:9947868-9947988 26 3.38e-04 ACATTGAACT ACAAGCTA CAATCAAACA chrX:12020987-12021107 46 3.38e-04 TTGGCTATAA ACAAGCTA GCAGACATCA chr3L:11381752-11381872 72 4.29e-04 TTACTAAACT TTTAGCTA GTTCCTGCTT chrX:1142728-1142848 17 4.29e-04 AATATTTAGC TTTAGCTA TAAAGCAGCC chr2L:7200324-7200444 13 4.29e-04 TTTTGAAATA TTTAGCTA ATAAACATAA chr3R:30222441-30222561 92 4.29e-04 AATTTATCAA TTTAGCTA CGTAGCTATA chr2L:12671257-12671377 101 4.29e-04 GTATCCTTGT TTTAGCTA CATTTGAATA chr2R:22464396-22464516 80 4.29e-04 CCCGTCAAAA GCTGGCTA TTTGGCTATT chrX:4495023-4495143 86 4.29e-04 TAAATGAATT TTTAGCTA GATCTTCAGC chr2L:17380675-17380795 84 4.29e-04 ACTCCCTGTT TATGGCTA TAAAAAGTCC chr2R:21751793-21751913 35 4.29e-04 TATCAGTTTT TTTAGCTA GCAAAACGCC chrX:5542941-5543061 64 4.29e-04 GAAATTTAAG TTTAGCTA TTAAAGAACC chr2L:13783631-13783751 16 4.85e-04 ACCAAAATAA AATGGCTA TAACAAGTTT chr2L:10650631-10650751 58 4.85e-04 TTTTCGATTT ATTAGCTA GAAATTCCAT chrX:2738812-2738932 47 4.85e-04 TACAGCCGCC AATGGCTA GTTCTAGCCG chr2L:11503752-11503872 40 4.85e-04 AGCCAACACA AATGGCTA CCAGTAGTAA chr3R:29554241-29554361 67 4.85e-04 ttaatatttt ATTAGCTA GTTTTTAAAA chr2L:17756935-17757055 74 5.76e-04 GAATAAAGAA TAAAGCTA ATCAATCGCA chr3L:17849622-17849742 99 5.76e-04 CCGGCTTTTC AAAAGCCA TCTGGCAACG chrX:12901150-12901270 51 5.76e-04 TCTAGCTTTT AAAAGCCA GCTTGCTGCA chrX:6077719-6077839 61 5.76e-04 TGATGTTTGT TAAAGCTA GAAAAAATCT chr3L:15109191-15109311 67 5.76e-04 TTGGCGAACA AAAAGCCA AGTTGGCAAC chr2L:5443180-5443300 39 5.76e-04 ATTTTGTACT TAAAGCTA GCTCTAAGTC chrX:16835885-16836005 48 6.39e-04 TTGACGGAAG AAAAGCTA GCAGCGCTGC chr2R:9136689-9136809 80 6.39e-04 aaaacaaaaa aaaaGCTA AAGCCGGATG chrX:22514865-22514985 47 6.39e-04 TTTTGAGTTT TCCAGCCA AATCGGGCTA chrX:20389712-20389832 57 6.39e-04 GCACAGGCCT AAAAGCTA GCTGCTATGC chrX:13301253-13301373 80 6.39e-04 GATTTACAAA AAAAGCTA TATTTTTCGA chr3R:6918859-6918979 49 6.98e-04 GATAAGTATA GATGGCTA AAAATACTTT chr2R:6759163-6759283 13 7.28e-04 TGTATAGCAT ACCAGCTA TGCGAGGTTT chr3L:9842198-9842318 94 7.28e-04 AGCATGTAAC ACCAGCTA AATTACCATC chr3L:4188258-4188378 38 7.28e-04 TTTCATGATT TTTGGCCA TTTCTTACGG chrX:16154520-16154640 4 7.28e-04 ATA ACAGGCTA AACCGTTAAC chrX:18869884-18870004 61 7.67e-04 GTGCTGCCAA TTTGGCTA TTTTTTTTTA chr3R:24051206-24051326 33 8.05e-04 ACAAGTGCCA GAAAGCTA TTCACTTCAT chr2R:18292066-18292186 92 8.60e-04 TTTCATGAAA TGTAGCCA AGGCACGTCA chrX:11661593-11661713 104 8.60e-04 CCCAACTGGT TAAGGCCA ATCTAAGTT chr3L:22351656-22351776 32 1.01e-03 ATCGTGATAG ATAAGCCA TTCGAGTTGA chr2R:13546384-13546504 68 1.01e-03 CTAGCAAAAA AAAGGCCA GATCTGGCGT chrX:9118465-9118585 14 1.01e-03 GCCAAATCCC AAAGGCCA GCTTAGTTCA chrX:19299485-19299605 64 1.01e-03 GTATTGAAAT TGTAGCTA TAAAAAGGCT chr2L:11808467-11808587 65 1.01e-03 TAACATTTAC ATAAGCCA GTGAGAAAAA chr3L:11472202-11472322 39 1.01e-03 ATTTCATATA AAAGGCCA ATAAACTTTG chr2R:15290605-15290725 68 1.01e-03 CCAACTATAT GCCAGCTA TATTGGCATC chrX:21351300-21351420 108 1.12e-03 TTAAGTTTCG AAAGGCTA GGAAA chrX:13301456-13301576 11 1.12e-03 GAACTGGAAT ATAAGCTA CCTAATTTTG chrX:6986034-6986154 50 1.12e-03 ACTTTATTTT AAAGGCTA ACATAGTTGG chr3L:21041421-21041541 69 1.12e-03 ttcttttaaG AGTAGCTA TAAAGATGCT chr3R:29263379-29263499 49 1.12e-03 CAAGTTGTTC ATAAGCTA AATATATATA chr3R:22889837-22889957 65 1.12e-03 CTATCCAAAA AGTAGCTA TGTTACCACC chrX:12473350-12473470 47 1.12e-03 TATCACATAA AAAGGCTA AACAAAAGTT chrX:13280706-13280826 30 1.13e-03 GTGCTGTGCA GTTGGCTA TTATCAGCTA chr3R:10646768-10646888 51 1.13e-03 GTGTTGGCAA GTTGGCTA ATTTCTAGCA chr3L:14999383-14999503 52 1.26e-03 AACTGCCATC ACTAGCCG AAGAGCTCCG chr3R:28811695-28811815 107 1.26e-03 AAATTATATT TCTAGCTG GAACAT chr3L:12065171-12065291 3 1.26e-03 TT TTCAGCCA AAAGTTGGAA chr3R:29764771-29764891 29 1.37e-03 TGCTGAGCGA TTCAGCTA TTTTAAGGCT chr2R:15702881-15703001 33 1.37e-03 TTCAAACCCA TTCAGCTA ATGGAAAAAT chrX:11573674-11573794 35 1.55e-03 AGCTATTTTT TCTAGCCT ATTTTCTTGT chr2L:21003634-21003754 25 1.63e-03 GTAGCACAGA AATAGCTG TTATTCTTTG chr2R:16731964-16732084 73 1.63e-03 TATATGATAT ACTAGCCT TTAGTTGCAC chr3R:6277941-6278061 88 1.90e-03 AGCGAGCCTT TATAGCTT AACCCCTAta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMTAGCYA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:2205396-2205516 1e-05 82_[+2]_30 chr4:261824-261944 1e-05 49_[+2]_63 chrX:15737273-15737393 1e-05 95_[+2]_17 chrX:12906983-12907103 1e-05 80_[+2]_32 chr2R:6102367-6102487 4e-05 101_[+2]_11 chrX:9687108-9687228 4e-05 54_[+2]_58 chr3R:22666503-22666623 4e-05 55_[+2]_57 chrX:13445715-13445835 4e-05 42_[+2]_70 chr2R:13235059-13235179 4e-05 11_[+2]_101 chr3R:23037473-23037593 4e-05 42_[+2]_70 chr3L:11471998-11472118 4e-05 5_[+2]_107 chrX:8725190-8725310 4e-05 8_[+2]_104 chrX:1865804-1865924 4e-05 67_[+2]_45 chr3L:18257793-18257913 4e-05 71_[+2]_41 chr2L:19111673-19111793 4e-05 84_[+2]_28 chr3R:21544009-21544129 5.9e-05 75_[+2]_37 chrX:20243619-20243739 5.9e-05 80_[+2]_32 chr2L:6824457-6824577 5.9e-05 41_[+2]_71 chr3L:15458575-15458695 5.9e-05 70_[+2]_42 chrX:1142928-1143048 8.4e-05 26_[+2]_86 chrX:16154722-16154842 8.4e-05 2_[+2]_110 chr3L:11443797-11443917 8.4e-05 13_[+2]_99 chr2L:15471296-15471416 8.4e-05 19_[+2]_93 chrX:17657190-17657310 8.4e-05 104_[+2]_8 chrX:12192850-12192970 8.4e-05 57_[+2]_55 chr3L:10165655-10165775 8.4e-05 14_[+2]_98 chr3R:22593616-22593736 8.4e-05 96_[+2]_16 chr2R:11471040-11471160 0.00015 23_[+2]_89 chr3L:10165860-10165980 0.00015 35_[+2]_77 chrX:10758406-10758526 0.00015 41_[+2]_71 chr2L:15340089-15340209 0.00015 27_[+2]_85 chr2R:13052190-13052310 0.00015 56_[+2]_56 chrX:10758170-10758290 0.00015 60_[+2]_52 chr2L:10364347-10364467 0.00015 15_[+2]_97 chr2R:7992008-7992128 0.00015 74_[+2]_38 chr2L:5044273-5044393 0.00015 107_[+2]_5 chr3L:21830289-21830409 0.00015 36_[+2]_76 chrX:3549401-3549521 0.00015 72_[+2]_40 chr3L:15177446-15177566 0.00015 13_[+2]_99 chr3R:22889635-22889755 0.00015 28_[+2]_84 chr3R:27922338-27922458 0.00015 30_[+2]_82 chr3L:7910879-7910999 0.00015 38_[+2]_74 chrX:6779933-6780053 0.00015 105_[+2]_7 chrX:17278418-17278538 0.00015 49_[+2]_63 chr3R:8330742-8330862 0.00015 102_[+2]_10 chr2L:15370919-15371039 0.00015 64_[+2]_48 chrX:10290464-10290584 0.00015 28_[+2]_84 chrX:18867028-18867148 0.00015 89_[+2]_23 chr3R:14011774-14011894 0.00015 102_[+2]_10 chr3R:17343862-17343982 0.00015 14_[+2]_98 chr3R:23037673-23037793 0.00019 46_[+2]_66 chr3L:15684604-15684724 0.00019 83_[+2]_29 chrX:10070908-10071028 0.00019 77_[+2]_35 chr2L:14508147-14508267 0.00019 107_[+2]_5 chrX:17625790-17625910 0.00021 45_[+2]_67 chrX:11917455-11917575 0.00021 9_[+2]_103 chrX:8661745-8661865 0.00021 55_[+2]_57 chrX:12100576-12100696 0.00021 18_[+2]_94 chr2R:23172180-23172300 0.00021 21_[+2]_91 chrX:6986236-6986356 0.00022 111_[+2]_1 chr3L:17750922-17751042 0.00022 12_[+2]_100 chrX:1135124-1135244 0.00024 107_[+2]_5 chrX:6068835-6068955 0.00024 69_[+2]_43 chrX:11572441-11572561 0.00024 64_[+2]_48 chrX:16427938-16428058 0.00024 12_[+2]_100 chr2R:24047243-24047363 0.00029 44_[+2]_68 chrX:4380469-4380589 0.00029 67_[+2]_45 chr2L:15499963-15500083 0.00029 40_[+2]_72 chr2R:21719981-21720101 0.00034 40_[+2]_72 chr2L:10687473-10687593 0.00034 53_[+2]_59 chrX:17681794-17681914 0.00034 14_[+2]_98 chr3R:12128469-12128589 0.00034 52_[+2]_60 chr2L:9947868-9947988 0.00034 25_[+2]_87 chrX:12020987-12021107 0.00034 45_[+2]_67 chr3L:11381752-11381872 0.00043 71_[+2]_41 chrX:1142728-1142848 0.00043 16_[+2]_96 chr2L:7200324-7200444 0.00043 12_[+2]_100 chr3R:30222441-30222561 0.00043 91_[+2]_21 chr2L:12671257-12671377 0.00043 100_[+2]_12 chr2R:22464396-22464516 0.00043 79_[+2]_33 chrX:4495023-4495143 0.00043 85_[+2]_27 chr2L:17380675-17380795 0.00043 83_[+2]_29 chr2R:21751793-21751913 0.00043 34_[+2]_78 chrX:5542941-5543061 0.00043 63_[+2]_49 chr2L:13783631-13783751 0.00048 15_[+2]_97 chr2L:10650631-10650751 0.00048 57_[+2]_55 chrX:2738812-2738932 0.00048 46_[+2]_66 chr2L:11503752-11503872 0.00048 39_[+2]_73 chr3R:29554241-29554361 0.00048 66_[+2]_46 chr2L:17756935-17757055 0.00058 73_[+2]_39 chr3L:17849622-17849742 0.00058 98_[+2]_14 chrX:12901150-12901270 0.00058 50_[+2]_62 chrX:6077719-6077839 0.00058 60_[+2]_52 chr3L:15109191-15109311 0.00058 66_[+2]_46 chr2L:5443180-5443300 0.00058 38_[+2]_74 chrX:16835885-16836005 0.00064 47_[+2]_65 chr2R:9136689-9136809 0.00064 79_[+2]_33 chrX:22514865-22514985 0.00064 46_[+2]_66 chrX:20389712-20389832 0.00064 56_[+2]_56 chrX:13301253-13301373 0.00064 79_[+2]_33 chr3R:6918859-6918979 0.0007 48_[+2]_64 chr2R:6759163-6759283 0.00073 12_[+2]_100 chr3L:9842198-9842318 0.00073 93_[+2]_19 chr3L:4188258-4188378 0.00073 37_[+2]_75 chrX:16154520-16154640 0.00073 3_[+2]_109 chrX:18869884-18870004 0.00077 60_[+2]_52 chr3R:24051206-24051326 0.0008 32_[+2]_80 chr2R:18292066-18292186 0.00086 91_[+2]_21 chrX:11661593-11661713 0.00086 103_[+2]_9 chr3L:22351656-22351776 0.001 31_[+2]_81 chr2R:13546384-13546504 0.001 67_[+2]_45 chrX:9118465-9118585 0.001 13_[+2]_99 chrX:19299485-19299605 0.001 63_[+2]_49 chr2L:11808467-11808587 0.001 64_[+2]_48 chr3L:11472202-11472322 0.001 38_[+2]_74 chr2R:15290605-15290725 0.001 67_[+2]_45 chrX:21351300-21351420 0.0011 107_[+2]_5 chrX:13301456-13301576 0.0011 10_[+2]_102 chrX:6986034-6986154 0.0011 49_[+2]_63 chr3L:21041421-21041541 0.0011 68_[+2]_44 chr3R:29263379-29263499 0.0011 48_[+2]_64 chr3R:22889837-22889957 0.0011 64_[+2]_48 chrX:12473350-12473470 0.0011 46_[+2]_66 chrX:13280706-13280826 0.0011 29_[+2]_83 chr3R:10646768-10646888 0.0011 50_[+2]_62 chr3L:14999383-14999503 0.0013 51_[+2]_61 chr3R:28811695-28811815 0.0013 106_[+2]_6 chr3L:12065171-12065291 0.0013 2_[+2]_110 chr3R:29764771-29764891 0.0014 28_[+2]_84 chr2R:15702881-15703001 0.0014 32_[+2]_80 chrX:11573674-11573794 0.0016 34_[+2]_78 chr2L:21003634-21003754 0.0016 24_[+2]_88 chr2R:16731964-16732084 0.0016 72_[+2]_40 chr3R:6277941-6278061 0.0019 87_[+2]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMTAGCYA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WMTAGCYA width=8 seqs=134 chr3L:2205396-2205516 ( 83) TCTAGCCA 1 chr4:261824-261944 ( 50) TCTAGCCA 1 chrX:15737273-15737393 ( 96) TCTAGCCA 1 chrX:12906983-12907103 ( 81) TCTAGCCA 1 chr2R:6102367-6102487 ( 102) TCTAGCTA 1 chrX:9687108-9687228 ( 55) TCTAGCTA 1 chr3R:22666503-22666623 ( 56) TCTAGCTA 1 chrX:13445715-13445835 ( 43) ACTAGCCA 1 chr2R:13235059-13235179 ( 12) TCTAGCTA 1 chr3R:23037473-23037593 ( 43) ACTAGCCA 1 chr3L:11471998-11472118 ( 6) TCTAGCTA 1 chrX:8725190-8725310 ( 9) TCTAGCTA 1 chrX:1865804-1865924 ( 68) TCTAGCTA 1 chr3L:18257793-18257913 ( 72) ACTAGCCA 1 chr2L:19111673-19111793 ( 85) ACTAGCCA 1 chr3R:21544009-21544129 ( 76) ACTAGCTA 1 chrX:20243619-20243739 ( 81) ACTAGCTA 1 chr2L:6824457-6824577 ( 42) ACTAGCTA 1 chr3L:15458575-15458695 ( 71) ACTAGCTA 1 chrX:1142928-1143048 ( 27) TATAGCCA 1 chrX:16154722-16154842 ( 3) TATAGCCA 1 chr3L:11443797-11443917 ( 14) TATAGCCA 1 chr2L:15471296-15471416 ( 20) GCTAGCCA 1 chrX:17657190-17657310 ( 105) TATAGCCA 1 chrX:12192850-12192970 ( 58) TATAGCCA 1 chr3L:10165655-10165775 ( 15) TATAGCCA 1 chr3R:22593616-22593736 ( 97) GCTAGCCA 1 chr2R:11471040-11471160 ( 24) AATAGCCA 1 chr3L:10165860-10165980 ( 36) TATAGCTA 1 chrX:10758406-10758526 ( 42) AATAGCCA 1 chr2L:15340089-15340209 ( 28) TATAGCTA 1 chr2R:13052190-13052310 ( 57) TATAGCTA 1 chrX:10758170-10758290 ( 61) TATAGCTA 1 chr2L:10364347-10364467 ( 16) GCTAGCTA 1 chr2R:7992008-7992128 ( 75) GCTAGCTA 1 chr2L:5044273-5044393 ( 108) AATAGCCA 1 chr3L:21830289-21830409 ( 37) GCTAGCTA 1 chrX:3549401-3549521 ( 73) GCTAGCTA 1 chr3L:15177446-15177566 ( 14) AATAGCCA 1 chr3R:22889635-22889755 ( 29) TATAGCTA 1 chr3R:27922338-27922458 ( 31) TATAGCTA 1 chr3L:7910879-7910999 ( 39) TATAGCTA 1 chrX:6779933-6780053 ( 106) AATAGCCA 1 chrX:17278418-17278538 ( 50) TATAGCTA 1 chr3R:8330742-8330862 ( 103) AATAGCCA 1 chr2L:15370919-15371039 ( 65) GCTAGCTA 1 chrX:10290464-10290584 ( 29) GCTAGCTA 1 chrX:18867028-18867148 ( 90) AATAGCCA 1 chr3R:14011774-14011894 ( 103) AATAGCCA 1 chr3R:17343862-17343982 ( 15) AATAGCCA 1 chr3R:23037673-23037793 ( 47) AATAGCTA 1 chr3L:15684604-15684724 ( 84) AATAGCTA 1 chrX:10070908-10071028 ( 78) AATAGCTA 1 chr2L:14508147-14508267 ( 108) AATAGCTA 1 chrX:17625790-17625910 ( 46) TCTGGCTA 1 chrX:11917455-11917575 ( 10) TCTGGCTA 1 chrX:8661745-8661865 ( 56) TCTGGCTA 1 chrX:12100576-12100696 ( 19) TCTGGCTA 1 chr2R:23172180-23172300 ( 22) TCTGGCTA 1 chrX:6986236-6986356 ( 112) ACTGGCTA 1 chr3L:17750922-17751042 ( 13) ACTGGCTA 1 chrX:1135124-1135244 ( 108) GATAGCCA 1 chrX:6068835-6068955 ( 70) TCAAGCCA 1 chrX:11572441-11572561 ( 65) TCAAGCCA 1 chrX:16427938-16428058 ( 13) TCAAGCCA 1 chr2R:24047243-24047363 ( 45) ACAAGCCA 1 chrX:4380469-4380589 ( 68) TCAAGCTA 1 chr2L:15499963-15500083 ( 41) GATAGCTA 1 chr2R:21719981-21720101 ( 41) TTTAGCCA 1 chr2L:10687473-10687593 ( 54) TTTAGCCA 1 chrX:17681794-17681914 ( 15) TTTAGCCA 1 chr3R:12128469-12128589 ( 53) GCTGGCCA 1 chr2L:9947868-9947988 ( 26) ACAAGCTA 1 chrX:12020987-12021107 ( 46) ACAAGCTA 1 chr3L:11381752-11381872 ( 72) TTTAGCTA 1 chrX:1142728-1142848 ( 17) TTTAGCTA 1 chr2L:7200324-7200444 ( 13) TTTAGCTA 1 chr3R:30222441-30222561 ( 92) TTTAGCTA 1 chr2L:12671257-12671377 ( 101) TTTAGCTA 1 chr2R:22464396-22464516 ( 80) GCTGGCTA 1 chrX:4495023-4495143 ( 86) TTTAGCTA 1 chr2L:17380675-17380795 ( 84) TATGGCTA 1 chr2R:21751793-21751913 ( 35) TTTAGCTA 1 chrX:5542941-5543061 ( 64) TTTAGCTA 1 chr2L:13783631-13783751 ( 16) AATGGCTA 1 chr2L:10650631-10650751 ( 58) ATTAGCTA 1 chrX:2738812-2738932 ( 47) AATGGCTA 1 chr2L:11503752-11503872 ( 40) AATGGCTA 1 chr3R:29554241-29554361 ( 67) ATTAGCTA 1 chr2L:17756935-17757055 ( 74) TAAAGCTA 1 chr3L:17849622-17849742 ( 99) AAAAGCCA 1 chrX:12901150-12901270 ( 51) AAAAGCCA 1 chrX:6077719-6077839 ( 61) TAAAGCTA 1 chr3L:15109191-15109311 ( 67) AAAAGCCA 1 chr2L:5443180-5443300 ( 39) TAAAGCTA 1 chrX:16835885-16836005 ( 48) AAAAGCTA 1 chr2R:9136689-9136809 ( 80) AAAAGCTA 1 chrX:22514865-22514985 ( 47) TCCAGCCA 1 chrX:20389712-20389832 ( 57) AAAAGCTA 1 chrX:13301253-13301373 ( 80) AAAAGCTA 1 chr3R:6918859-6918979 ( 49) GATGGCTA 1 chr2R:6759163-6759283 ( 13) ACCAGCTA 1 chr3L:9842198-9842318 ( 94) ACCAGCTA 1 chr3L:4188258-4188378 ( 38) TTTGGCCA 1 chrX:16154520-16154640 ( 4) ACAGGCTA 1 chrX:18869884-18870004 ( 61) TTTGGCTA 1 chr3R:24051206-24051326 ( 33) GAAAGCTA 1 chr2R:18292066-18292186 ( 92) TGTAGCCA 1 chrX:11661593-11661713 ( 104) TAAGGCCA 1 chr3L:22351656-22351776 ( 32) ATAAGCCA 1 chr2R:13546384-13546504 ( 68) AAAGGCCA 1 chrX:9118465-9118585 ( 14) AAAGGCCA 1 chrX:19299485-19299605 ( 64) TGTAGCTA 1 chr2L:11808467-11808587 ( 65) ATAAGCCA 1 chr3L:11472202-11472322 ( 39) AAAGGCCA 1 chr2R:15290605-15290725 ( 68) GCCAGCTA 1 chrX:21351300-21351420 ( 108) AAAGGCTA 1 chrX:13301456-13301576 ( 11) ATAAGCTA 1 chrX:6986034-6986154 ( 50) AAAGGCTA 1 chr3L:21041421-21041541 ( 69) AGTAGCTA 1 chr3R:29263379-29263499 ( 49) ATAAGCTA 1 chr3R:22889837-22889957 ( 65) AGTAGCTA 1 chrX:12473350-12473470 ( 47) AAAGGCTA 1 chrX:13280706-13280826 ( 30) GTTGGCTA 1 chr3R:10646768-10646888 ( 51) GTTGGCTA 1 chr3L:14999383-14999503 ( 52) ACTAGCCG 1 chr3R:28811695-28811815 ( 107) TCTAGCTG 1 chr3L:12065171-12065291 ( 3) TTCAGCCA 1 chr3R:29764771-29764891 ( 29) TTCAGCTA 1 chr2R:15702881-15703001 ( 33) TTCAGCTA 1 chrX:11573674-11573794 ( 35) TCTAGCCT 1 chr2L:21003634-21003754 ( 25) AATAGCTG 1 chr2R:16731964-16732084 ( 73) ACTAGCCT 1 chr3R:6277941-6278061 ( 88) TATAGCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMTAGCYA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.49657 E= 7.5e-021 34 -1371 -40 47 29 117 -249 -88 -56 -172 -1371 113 129 -1371 21 -1371 -1371 -1371 258 -1371 -1371 254 -1371 -1371 -1371 111 -1371 93 153 -1371 -290 -388 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMTAGCYA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 134 E= 7.5e-021 0.417910 0.000000 0.126866 0.455224 0.402985 0.388060 0.029851 0.179104 0.223881 0.052239 0.000000 0.723881 0.805970 0.000000 0.194030 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.373134 0.000000 0.626866 0.955224 0.000000 0.022388 0.022388 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMTAGCYA MEME-2 regular expression -------------------------------------------------------------------------------- [TA][AC][TA]AGC[TC]A -------------------------------------------------------------------------------- Time 13.54 secs. ******************************************************************************** ******************************************************************************** MOTIF GWGMTGCC MEME-3 width = 8 sites = 16 llr = 163 E-value = 7.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GWGMTGCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3:6:::: pos.-specific C :1:4::98 probability G a:a::a:3 matrix T :6::a:1: bits 2.6 * * * 2.3 * * * 2.1 * * ** 1.8 * * *** Relative 1.5 * * **** Entropy 1.3 * * **** (14.7 bits) 1.0 * ****** 0.8 * ****** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGATGCC consensus A C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGMTGCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12192850-12192970 37 2.63e-06 CTGCCCCACT GTGCTGCC AATTTGGCTG chr2L:17756935-17757055 48 7.67e-06 AAGTAAGCCA GTGATGCC AAATGGATGA chr3L:4372326-4372446 10 7.67e-06 GCCGAAGCA GTGATGCC TACTTGGCTA chrX:22514865-22514985 18 7.67e-06 TGTCCGAACA GTGATGCC CCGGTGGTAT chr3L:11062582-11062702 27 7.67e-06 GTTGACGTCA GTGATGCC GACTGCCATT chrX:11572441-11572561 24 7.67e-06 CGCTGATCCA GTGATGCC ACATCTTTTG chr2R:11382564-11382684 77 7.67e-06 CTCAAATTCC GTGATGCC AACTCATCTC chr3R:10815161-10815281 36 1.53e-05 CGTTTCACCA GAGATGCC GTTTTTAAAC chrX:13444937-13445057 25 1.53e-05 AGCATCCTCA GAGATGCC AAATATTTTG chrX:13301253-13301373 24 1.53e-05 GCCCGAAACA GAGATGCC AGATTATGGG chr3L:5534381-5534501 11 1.79e-05 TTAGCCAAAA GTGCTGCG CACATAGCCT chrX:17278418-17278538 11 1.79e-05 CTAGATCTCT GTGCTGCG CCAATTTGCA chr3L:11439127-11439247 90 2.68e-05 ATTATGCGAC GAGCTGCG GAAATGTTTG chr2R:23172180-23172300 12 2.68e-05 GTGGATGCCA GAGCTGCG AATCTGGCTA chrX:2738812-2738932 16 2.94e-05 TTTACCCGCA GCGATGCC CGCTCGGTTG chrX:15737273-15737393 82 4.33e-05 GTCTGCTTTA GTGCTGTC GATTAATCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGMTGCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12192850-12192970 2.6e-06 36_[+3]_76 chr2L:17756935-17757055 7.7e-06 47_[+3]_65 chr3L:4372326-4372446 7.7e-06 9_[+3]_103 chrX:22514865-22514985 7.7e-06 17_[+3]_95 chr3L:11062582-11062702 7.7e-06 26_[+3]_86 chrX:11572441-11572561 7.7e-06 23_[+3]_89 chr2R:11382564-11382684 7.7e-06 76_[+3]_36 chr3R:10815161-10815281 1.5e-05 35_[+3]_77 chrX:13444937-13445057 1.5e-05 24_[+3]_88 chrX:13301253-13301373 1.5e-05 23_[+3]_89 chr3L:5534381-5534501 1.8e-05 10_[+3]_102 chrX:17278418-17278538 1.8e-05 10_[+3]_102 chr3L:11439127-11439247 2.7e-05 89_[+3]_23 chr2R:23172180-23172300 2.7e-05 11_[+3]_101 chrX:2738812-2738932 2.9e-05 15_[+3]_97 chrX:15737273-15737393 4.3e-05 81_[+3]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGMTGCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GWGMTGCC width=8 seqs=16 chrX:12192850-12192970 ( 37) GTGCTGCC 1 chr2L:17756935-17757055 ( 48) GTGATGCC 1 chr3L:4372326-4372446 ( 10) GTGATGCC 1 chrX:22514865-22514985 ( 18) GTGATGCC 1 chr3L:11062582-11062702 ( 27) GTGATGCC 1 chrX:11572441-11572561 ( 24) GTGATGCC 1 chr2R:11382564-11382684 ( 77) GTGATGCC 1 chr3R:10815161-10815281 ( 36) GAGATGCC 1 chrX:13444937-13445057 ( 25) GAGATGCC 1 chrX:13301253-13301373 ( 24) GAGATGCC 1 chr3L:5534381-5534501 ( 11) GTGCTGCG 1 chrX:17278418-17278538 ( 11) GTGCTGCG 1 chr3L:11439127-11439247 ( 90) GAGCTGCG 1 chr2R:23172180-23172300 ( 12) GAGCTGCG 1 chrX:2738812-2738932 ( 16) GCGATGCC 1 chrX:15737273-15737393 ( 82) GTGCTGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGMTGCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 7.0e+000 -1064 -1064 258 -1064 -8 -146 -1064 92 -1064 -1064 258 -1064 92 112 -1064 -1064 -1064 -1064 -1064 160 -1064 -1064 258 -1064 -1064 244 -1064 -240 -1064 212 58 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGMTGCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 7.0e+000 0.000000 0.000000 1.000000 0.000000 0.312500 0.062500 0.000000 0.625000 0.000000 0.000000 1.000000 0.000000 0.625000 0.375000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.937500 0.000000 0.062500 0.000000 0.750000 0.250000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGMTGCC MEME-3 regular expression -------------------------------------------------------------------------------- G[TA]G[AC]TGC[CG] -------------------------------------------------------------------------------- Time 19.36 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGCCAG MEME-4 width = 8 sites = 7 llr = 82 E-value = 5.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGCCAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::7:::a: pos.-specific C :a1:a9:: probability G a::a:1:a matrix T ::1::::: bits 2.6 ** ** * 2.3 ** ** * 2.1 ** *** * 1.8 ** *** * Relative 1.5 ** ***** Entropy 1.3 ** ***** (16.9 bits) 1.0 ** ***** 0.8 ** ***** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCAGCCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCCAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1142928-1143048 56 2.63e-06 TAGCTATAAA GCAGCCAG CTCGACAGCA chr2R:6102367-6102487 23 2.63e-06 AAAGGAAGGG GCAGCCAG CCGTCCTTTA chrX:1142728-1142848 29 2.63e-06 TAGCTATAAA GCAGCCAG TTCGACAGCA chrX:15737487-15737607 102 2.63e-06 GGCGGCAGGA GCAGCCAG TGGCAGGACC chrX:4912468-4912588 26 4.00e-06 CGTTCTTTTG GCCGCCAG CTTGTTGAGC chrX:1135124-1135244 1 6.62e-06 . GCTGCCAG ATGAACCGCT chr2R:11471040-11471160 50 9.19e-06 CTGATCATTT GCAGCGAG CCACATCTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCCAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1142928-1143048 2.6e-06 55_[+4]_57 chr2R:6102367-6102487 2.6e-06 22_[+4]_90 chrX:1142728-1142848 2.6e-06 28_[+4]_84 chrX:15737487-15737607 2.6e-06 101_[+4]_11 chrX:4912468-4912588 4e-06 25_[+4]_87 chrX:1135124-1135244 6.6e-06 [+4]_112 chr2R:11471040-11471160 9.2e-06 49_[+4]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCCAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGCCAG width=8 seqs=7 chrX:1142928-1143048 ( 56) GCAGCCAG 1 chr2R:6102367-6102487 ( 23) GCAGCCAG 1 chrX:1142728-1142848 ( 29) GCAGCCAG 1 chrX:15737487-15737607 ( 102) GCAGCCAG 1 chrX:4912468-4912588 ( 26) GCCGCCAG 1 chrX:1135124-1135244 ( 1) GCTGCCAG 1 chr2R:11471040-11471160 ( 50) GCAGCGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCCAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 5.7e+002 -945 -945 257 -945 -945 253 -945 -945 111 -27 -945 -120 -945 -945 257 -945 -945 253 -945 -945 -945 231 -23 -945 160 -945 -945 -945 -945 -945 257 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCCAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 5.7e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.142857 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.857143 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCCAG MEME-4 regular expression -------------------------------------------------------------------------------- GCAGCCAG -------------------------------------------------------------------------------- Time 25.21 secs. ******************************************************************************** ******************************************************************************** MOTIF SCBGCWSK MEME-5 width = 8 sites = 30 llr = 266 E-value = 1.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCBGCWSK MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::4:: pos.-specific C 4a4:a:32 probability G 6:4a:275 matrix T ::2::5:3 bits 2.6 * ** 2.3 * ** 2.1 * ** 1.8 * ** Relative 1.5 ** ** * Entropy 1.3 ** ** * (12.8 bits) 1.0 ** ** * 0.8 ***** ** 0.5 ***** ** 0.3 ******** 0.0 -------- Multilevel GCCGCTGG consensus C G ACT sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCBGCWSK MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13445715-13445835 31 2.64e-06 AAGACAGTGA GCGGCTGG AAAAACTAGC chr2L:5044273-5044393 5 5.29e-06 TTAC GCCGCAGG CTAATCCAAT chrX:15737487-15737607 93 5.29e-06 GGGAATCGAG GCGGCAGG AGCAGCCAGT chr3R:10646768-10646888 24 5.29e-06 TACGGCTGCA GCGGCAGG AGCAACATAG chr3R:10815161-10815281 88 9.34e-06 AAACAGCTGT CCCGCTGG CGCTTCACTT chrX:6068835-6068955 95 9.34e-06 AGTACCACGA CCCGCTGG CACTGCTTAT chr3L:8851426-8851546 78 9.34e-06 GAATGAATGG CCGGCTGG AGTTGCATGA chr3L:19096190-19096310 5 1.75e-05 AAAT GCCGCTCG CGAGAAGACC chr3R:6460770-6460890 83 1.75e-05 CGCCAGCAGA GCGGCTGC ACAGCCGACG chr2R:15703082-15703202 58 2.43e-05 GTGTAAGCCG GCGGCACG ACGACAACTG chrX:2738812-2738932 61 2.43e-05 GCTAGTTCTA GCCGCAGC TTTCGTTTCC chrX:9687108-9687228 20 3.48e-05 TGTCATTGTG GCCGCTGT GTAGCTAAAA chr3R:24931937-24932057 71 3.48e-05 GGCAACCCTG GCCGCTGT CACTTGCTTT chr3L:10165860-10165980 89 3.48e-05 TAATGCTAAT GCGGCTGT GAGATGATAT chrX:18973212-18973332 59 3.48e-05 TACGTAATCT GCGGCTGT CTGATCACTC chr2R:21751793-21751913 69 4.94e-05 GCATCTCTAC GCTGCGGG CTACTTGAAG chr3L:11443797-11443917 42 6.03e-05 ACATCACTGG GCGGCGGT AAAAGTCGGT chr3R:19890419-19890539 92 6.03e-05 GTCCAGTATT GCCGCTCC CTTCGAAATG chr3L:18257793-18257913 109 6.32e-05 ACACTTTTAA CCCGCGCG AAAC chrX:2704407-2704527 7 6.86e-05 CTGTTG GCGGCACC TGATAATTGC chrX:3549401-3549521 6 8.32e-05 ACTAG CCTGCAGG CTAGATCTTT chrX:9118465-9118585 57 8.32e-05 GATCAGCAAG CCTGCAGG GAGTTCTATC chr3R:26550997-26551117 94 9.51e-05 TGATTTTGAA CCTGCGGG AAGATACAAG chr3L:5785652-5785772 81 1.06e-04 CGGTTTTCCC CCCGCTCC CCCCGGAAAT chrX:12901150-12901270 63 1.06e-04 AAGCCAGCTT GCTGCAGC ACTAGATTTT chrX:2704180-2704300 110 1.14e-04 ATTTATTTTT GCCGCACT AGG chr3L:178102-178222 88 1.26e-04 GCGTGTCACG CCCGCGCC TACAAATTTG chr2L:15340089-15340209 17 1.26e-04 GTGCGAAAGT GCTGCTGT AGATATAGCT chrX:12473350-12473470 110 1.31e-04 ATAAAGATCA CCTGCTCG TTT chr2R:21719981-21720101 23 1.61e-04 CTCTACAGAT CCGGCACT CTAGCTCCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCBGCWSK MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13445715-13445835 2.6e-06 30_[+5]_82 chr2L:5044273-5044393 5.3e-06 4_[+5]_108 chrX:15737487-15737607 5.3e-06 92_[+5]_20 chr3R:10646768-10646888 5.3e-06 23_[+5]_89 chr3R:10815161-10815281 9.3e-06 87_[+5]_25 chrX:6068835-6068955 9.3e-06 94_[+5]_18 chr3L:8851426-8851546 9.3e-06 77_[+5]_35 chr3L:19096190-19096310 1.7e-05 4_[+5]_108 chr3R:6460770-6460890 1.7e-05 82_[+5]_30 chr2R:15703082-15703202 2.4e-05 57_[+5]_55 chrX:2738812-2738932 2.4e-05 60_[+5]_52 chrX:9687108-9687228 3.5e-05 19_[+5]_93 chr3R:24931937-24932057 3.5e-05 70_[+5]_42 chr3L:10165860-10165980 3.5e-05 88_[+5]_24 chrX:18973212-18973332 3.5e-05 58_[+5]_54 chr2R:21751793-21751913 4.9e-05 68_[+5]_44 chr3L:11443797-11443917 6e-05 41_[+5]_71 chr3R:19890419-19890539 6e-05 91_[+5]_21 chr3L:18257793-18257913 6.3e-05 108_[+5]_4 chrX:2704407-2704527 6.9e-05 6_[+5]_106 chrX:3549401-3549521 8.3e-05 5_[+5]_107 chrX:9118465-9118585 8.3e-05 56_[+5]_56 chr3R:26550997-26551117 9.5e-05 93_[+5]_19 chr3L:5785652-5785772 0.00011 80_[+5]_32 chrX:12901150-12901270 0.00011 62_[+5]_50 chrX:2704180-2704300 0.00011 109_[+5]_3 chr3L:178102-178222 0.00013 87_[+5]_25 chr2L:15340089-15340209 0.00013 16_[+5]_96 chrX:12473350-12473470 0.00013 109_[+5]_3 chr2R:21719981-21720101 0.00016 22_[+5]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCBGCWSK MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCBGCWSK width=8 seqs=30 chrX:13445715-13445835 ( 31) GCGGCTGG 1 chr2L:5044273-5044393 ( 5) GCCGCAGG 1 chrX:15737487-15737607 ( 93) GCGGCAGG 1 chr3R:10646768-10646888 ( 24) GCGGCAGG 1 chr3R:10815161-10815281 ( 88) CCCGCTGG 1 chrX:6068835-6068955 ( 95) CCCGCTGG 1 chr3L:8851426-8851546 ( 78) CCGGCTGG 1 chr3L:19096190-19096310 ( 5) GCCGCTCG 1 chr3R:6460770-6460890 ( 83) GCGGCTGC 1 chr2R:15703082-15703202 ( 58) GCGGCACG 1 chrX:2738812-2738932 ( 61) GCCGCAGC 1 chrX:9687108-9687228 ( 20) GCCGCTGT 1 chr3R:24931937-24932057 ( 71) GCCGCTGT 1 chr3L:10165860-10165980 ( 89) GCGGCTGT 1 chrX:18973212-18973332 ( 59) GCGGCTGT 1 chr2R:21751793-21751913 ( 69) GCTGCGGG 1 chr3L:11443797-11443917 ( 42) GCGGCGGT 1 chr3R:19890419-19890539 ( 92) GCCGCTCC 1 chr3L:18257793-18257913 ( 109) CCCGCGCG 1 chrX:2704407-2704527 ( 7) GCGGCACC 1 chrX:3549401-3549521 ( 6) CCTGCAGG 1 chrX:9118465-9118585 ( 57) CCTGCAGG 1 chr3R:26550997-26551117 ( 94) CCTGCGGG 1 chr3L:5785652-5785772 ( 81) CCCGCTCC 1 chrX:12901150-12901270 ( 63) GCTGCAGC 1 chrX:2704180-2704300 ( 110) GCCGCACT 1 chr3L:178102-178222 ( 88) CCCGCGCC 1 chr2L:15340089-15340209 ( 17) GCTGCTGT 1 chrX:12473350-12473470 ( 110) CCTGCTCG 1 chr2R:21719981-21720101 ( 23) CCGGCACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCBGCWSK MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 1.4e+001 -1155 109 192 -1155 -1155 254 -1155 -1155 -1155 121 113 -50 -1155 -1155 258 -1155 -1155 254 -1155 -1155 15 -1155 -1 50 -1155 95 199 -1155 -1155 44 158 -31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCBGCWSK MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 1.4e+001 0.000000 0.366667 0.633333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.400000 0.366667 0.233333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.366667 0.000000 0.166667 0.466667 0.000000 0.333333 0.666667 0.000000 0.000000 0.233333 0.500000 0.266667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCBGCWSK MEME-5 regular expression -------------------------------------------------------------------------------- [GC]C[CGT]GC[TA][GC][GTC] -------------------------------------------------------------------------------- Time 31.05 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12020987-12021107 1.74e-04 58_[+1(1.79e-05)]_54 chr3R:29512431-29512551 4.51e-01 120 chr3R:31703594-31703714 4.56e-01 120 chr2L:5443180-5443300 7.39e-01 120 chrX:12473350-12473470 1.86e-01 120 chrX:16816602-16816722 8.49e-01 120 chrX:12906983-12907103 2.30e-02 80_[+2(1.01e-05)]_32 chr3R:17710592-17710712 3.54e-01 120 chr3L:1571561-1571681 8.15e-01 120 chrX:5542941-5543061 4.48e-01 120 chr2L:14508147-14508267 3.30e-01 120 chrX:11661593-11661713 9.47e-03 9_[+3(8.20e-05)]_103 chr2L:2925771-2925891 8.45e-01 120 chrX:16072778-16072898 9.97e-01 120 chr3R:17343862-17343982 3.87e-01 120 chr3R:14011774-14011894 2.56e-01 120 chr3L:13135537-13135657 9.81e-01 120 chr2L:1470158-1470278 9.94e-01 120 chrX:9687324-9687444 9.00e-01 120 chrX:9390898-9391018 7.09e-01 120 chr3R:29554241-29554361 4.13e-03 95_[+1(1.79e-05)]_17 chrX:9007339-9007459 7.34e-01 120 chr2R:10312820-10312940 8.03e-01 120 chrX:4912468-4912588 1.98e-04 25_[+4(4.00e-06)]_42_[+3(8.20e-05)]_\ 37 chr3R:24051206-24051326 5.26e-01 120 chr2L:20940282-20940402 2.72e-01 120 chr2R:11382564-11382684 1.08e-03 76_[+3(7.67e-06)]_4_[+1(6.86e-05)]_\ 24 chrX:2704180-2704300 2.28e-01 120 chr3R:22593616-22593736 1.68e-02 96_[+2(8.38e-05)]_16 chr2R:21751793-21751913 1.87e-05 68_[+5(4.94e-05)]_11_[+1(2.31e-05)]_\ 25 chr2L:9947868-9947988 5.75e-01 120 chr2R:15290605-15290725 1.38e-02 81_[+1(1.79e-05)]_31 chr3L:12065171-12065291 5.74e-01 120 chr3L:15223240-15223360 9.93e-01 120 chr3L:15177245-15177365 7.67e-01 120 chrX:18867028-18867148 1.00e-02 120 chrX:8737588-8737708 9.82e-01 120 chr2L:21013258-21013378 3.81e-02 7_[+1(5.85e-05)]_105 chr2L:17380675-17380795 1.57e-01 120 chr2L:16419764-16419884 7.38e-01 120 chr3R:30029733-30029853 9.99e-01 120 chrX:11573674-11573794 4.25e-01 120 chr3L:15109191-15109311 1.96e-02 80_[+1(3.32e-05)]_32 chr3L:11472202-11472322 3.16e-01 120 chr2L:16848819-16848939 1.00e+00 120 chrX:4495023-4495143 3.48e-05 8_[+1(5.16e-06)]_104 chr3R:6277941-6278061 8.27e-01 120 chr3L:11438907-11439027 7.28e-01 120 chr3R:21542141-21542261 6.21e-01 120 chrX:13280909-13281029 6.15e-01 120 chr3L:18221108-18221228 9.78e-02 120 chrX:10290464-10290584 3.69e-01 120 chr2R:22464396-22464516 6.14e-03 112_[+1(5.16e-06)] chrX:2032296-2032416 7.14e-01 120 chr3L:15458575-15458695 6.65e-03 70_[+2(5.92e-05)]_17_[+1(1.79e-05)]_\ 17 chr3R:6278180-6278300 9.96e-01 120 chr3R:29082604-29082724 9.93e-01 120 chr2R:13235313-13235433 3.46e-01 120 chr2R:16203252-16203372 3.27e-01 120 chrX:8661944-8662064 9.78e-01 120 chr2L:11808467-11808587 1.71e-01 120 chr2L:6824457-6824577 1.46e-03 41_[+2(5.92e-05)]_3_[+4(9.42e-05)]_\ 60 chr2L:15370919-15371039 7.97e-02 120 chr3R:8330742-8330862 1.33e-01 120 chr3R:29583182-29583302 1.00e+00 120 chrX:15737273-15737393 1.56e-03 81_[+3(4.33e-05)]_6_[+2(1.01e-05)]_\ 17 chrX:16427938-16428058 1.44e-02 120 chrX:17278418-17278538 1.52e-04 10_[+3(1.79e-05)]_102 chr3R:10646768-10646888 9.35e-04 23_[+5(5.29e-06)]_89 chr2L:11032393-11032513 7.45e-03 112_[+1(1.79e-05)] chr2L:19111673-19111793 8.99e-04 84_[+2(3.97e-05)]_15_[+1(4.35e-05)]_\ 5 chr2L:18504533-18504653 2.32e-01 120 chrX:16428140-16428260 3.60e-02 120 chrX:20244021-20244141 3.84e-01 120 chr2L:15499963-15500083 3.94e-01 120 chrX:6779933-6780053 1.61e-01 120 chrX:16154520-16154640 7.91e-01 120 chr2L:12671257-12671377 6.44e-01 120 chrX:19299485-19299605 1.56e-02 120 chr3R:30222441-30222561 9.24e-02 120 chr3L:8851225-8851345 9.78e-01 120 chr3R:22889837-22889957 5.40e-01 120 chr3R:29263379-29263499 6.85e-01 120 chrX:9118465-9118585 1.31e-03 56_[+5(8.32e-05)]_56 chrX:11572441-11572561 3.81e-05 10_[+1(2.31e-05)]_5_[+3(7.67e-06)]_\ 89 chrX:18973013-18973133 8.58e-01 120 chr2R:21733907-21734027 1.29e-02 99_[+1(1.79e-05)]_13 chrX:6077719-6077839 4.16e-02 85_[+1(3.32e-05)]_27 chr3R:9570191-9570311 4.30e-02 52_[+3(8.20e-05)]_60 chrX:15737487-15737607 6.08e-06 92_[+5(5.29e-06)]_1_[+4(2.63e-06)]_\ 11 chrX:19160761-19160881 9.92e-01 120 chr3L:4188258-4188378 6.20e-01 120 chr2R:15702881-15703001 3.06e-01 120 chr3R:6419681-6419801 8.96e-01 120 chrX:8635100-8635220 5.13e-02 120 chr3L:9842198-9842318 1.11e-02 107_[+1(1.79e-05)]_5 chr2R:9439701-9439821 4.96e-02 120 chr2R:16731964-16732084 6.37e-01 120 chr3L:10507189-10507309 6.13e-01 120 chr2R:23172180-23172300 1.90e-04 11_[+3(2.68e-05)]_101 chrX:13280706-13280826 3.17e-02 19_[+3(7.26e-05)]_93 chr3L:18257793-18257913 6.25e-05 71_[+2(3.97e-05)]_6_[+1(1.79e-05)]_\ 15_[+5(6.32e-05)]_4 chr3R:6766815-6766935 9.88e-01 120 chr2L:7200324-7200444 7.36e-01 120 chr3R:4394805-4394925 2.03e-01 120 chr3R:8739493-8739613 1.00e+00 120 chrX:18870084-18870204 7.12e-01 120 chrX:2704407-2704527 4.10e-02 6_[+5(6.86e-05)]_106 chrX:12100576-12100696 5.18e-01 120 chr3L:11439127-11439247 3.11e-04 27_[+1(3.32e-05)]_54_[+3(2.68e-05)]_\ 23 chr3L:11062582-11062702 2.43e-03 26_[+3(7.67e-06)]_86 chr3L:21041421-21041541 1.36e-01 120 chr3R:12128469-12128589 1.26e-03 105_[+1(1.79e-05)]_7 chr4:261824-261944 2.89e-03 49_[+2(1.01e-05)]_63 chrX:6986034-6986154 7.55e-01 120 chrX:13301253-13301373 1.87e-03 23_[+3(1.53e-05)]_89 chr3L:7910879-7910999 1.19e-01 120 chrX:1865804-1865924 1.92e-03 67_[+2(3.97e-05)]_45 chr2L:21003634-21003754 9.47e-04 63_[+3(5.80e-05)]_49 chr3R:27922338-27922458 2.97e-01 120 chrX:8661745-8661865 2.08e-01 120 chr3R:22889635-22889755 4.35e-02 120 chrX:1142728-1142848 1.67e-05 28_[+4(2.63e-06)]_5_[+1(5.16e-06)]_\ 71 chr3L:15203261-15203381 2.85e-01 120 chrX:4380469-4380589 1.92e-01 120 chrX:10904814-10904934 3.76e-01 120 chr3R:30029939-30030059 4.94e-02 120 chrX:2032510-2032630 5.03e-03 16_[+1(3.32e-05)]_96 chrX:11917455-11917575 1.75e-01 120 chr2R:11360499-11360619 6.64e-01 120 chr3R:29764771-29764891 7.07e-03 15_[+1(5.85e-05)]_97 chr3R:30475915-30476035 8.04e-01 120 chr2R:13546384-13546504 3.13e-02 120 chr2L:21013460-21013580 6.59e-01 120 chr3L:8851426-8851546 4.70e-03 77_[+5(9.34e-06)]_35 chrX:8725190-8725310 3.43e-04 8_[+2(3.97e-05)]_9_[+1(7.79e-06)]_\ 87 chr2L:11503752-11503872 9.60e-02 120 chr3L:15177446-15177566 9.85e-05 27_[+1(1.79e-05)]_85 chr3L:7371431-7371551 1.53e-02 120 chrX:12480631-12480751 1.68e-03 46_[+1(1.79e-05)]_48_[+3(8.46e-05)]_\ 10 chr2L:15752161-15752281 2.67e-01 120 chrX:20389712-20389832 2.87e-02 120 chrX:12664247-12664367 5.68e-01 120 chrX:3549401-3549521 8.78e-03 5_[+5(8.32e-05)]_107 chr3L:4384113-4384233 9.48e-01 120 chr2L:10801511-10801631 9.42e-01 120 chr3L:12065399-12065519 1.90e-01 120 chr3L:11588350-11588470 9.69e-01 120 chr3R:12858005-12858125 9.92e-01 120 chrX:6068835-6068955 1.59e-04 94_[+5(9.34e-06)]_18 chr3L:21830289-21830409 4.77e-02 120 chrX:13301456-13301576 6.46e-01 120 chr3L:17750922-17751042 6.49e-02 120 chr2R:18292066-18292186 2.84e-03 107_[+1(2.31e-05)]_5 chr3L:18229125-18229245 9.85e-01 120 chrX:2738812-2738932 9.87e-06 15_[+3(2.94e-05)]_37_[+5(2.43e-05)]_\ 52 chr2L:5044273-5044393 3.21e-08 4_[+5(5.29e-06)]_41_[+1(7.79e-06)]_\ 59 chrX:17681794-17681914 1.28e-01 120 chrX:22514865-22514985 5.12e-04 17_[+3(7.67e-06)]_95 chr3R:19890419-19890539 2.27e-02 91_[+5(6.03e-05)]_21 chrX:12901360-12901480 5.09e-01 120 chr3L:11344479-11344599 3.67e-01 120 chrX:20243818-20243938 3.18e-01 120 chr2R:6759163-6759283 1.65e-03 120 chr2L:10650631-10650751 1.12e-01 120 chr2L:15371128-15371248 7.03e-01 120 chrX:4971801-4971921 7.74e-01 120 chr2R:7992008-7992128 1.37e-02 120 chr3L:9033006-9033126 9.75e-01 120 chr2R:24047243-24047363 3.18e-02 120 chr2R:11951501-11951621 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7.64e-01 120 chr3R:28811695-28811815 7.98e-01 120 chrX:10758406-10758526 7.05e-04 55_[+1(5.16e-06)]_57 chr3L:11443797-11443917 1.33e-04 13_[+2(8.38e-05)]_11_[+1(1.79e-05)]_\ 1_[+5(6.03e-05)]_71 chrX:16154722-16154842 1.52e-03 2_[+2(8.38e-05)]_6_[+1(1.79e-05)]_\ 96 chr3L:15684604-15684724 2.43e-02 97_[+1(1.79e-05)]_15 chr3L:10165860-10165980 9.42e-06 51_[+1(1.79e-05)]_29_[+5(3.48e-05)]_\ 24 chr3R:10815161-10815281 7.48e-04 35_[+3(1.53e-05)]_44_[+5(9.34e-06)]_\ 25 chrX:13445715-13445835 2.58e-07 30_[+5(2.64e-06)]_4_[+2(3.97e-05)]_\ 28_[+1(5.16e-06)]_34 chr3R:22666503-22666623 3.72e-03 55_[+2(3.97e-05)]_57 chr3L:4372326-4372446 5.31e-03 9_[+3(7.67e-06)]_103 chr3L:17849622-17849742 7.38e-02 120 chr3L:14999383-14999503 6.84e-03 120 chr3R:22885720-22885840 9.58e-01 120 chr3L:5785652-5785772 6.94e-02 120 chr3L:21041163-21041283 1.41e-01 120 chrX:19897926-19898046 9.39e-01 120 chr3R:24931937-24932057 3.89e-04 32_[+1(1.79e-05)]_30_[+5(3.48e-05)]_\ 42 chrX:9687108-9687228 2.19e-06 5_[+3(4.33e-05)]_6_[+5(3.48e-05)]_\ 27_[+2(3.97e-05)]_58 chr3L:19096190-19096310 1.11e-04 4_[+5(1.75e-05)]_9_[+1(5.85e-05)]_\ 91 chr2L:10687473-10687593 6.26e-01 120 chr3L:21688751-21688871 9.86e-01 120 chr3L:178102-178222 3.52e-02 120 chr3R:23037673-23037793 7.92e-03 120 chr2R:6102367-6102487 1.37e-04 22_[+4(2.63e-06)]_71_[+2(3.97e-05)]_\ 11 chrX:8725391-8725511 9.01e-01 120 chr3R:21544009-21544129 3.40e-01 75_[+2(5.92e-05)]_37 chr3L:22351656-22351776 5.99e-03 120 chr3L:15772433-15772553 2.36e-02 78_[+1(1.79e-05)]_34 chrX:6775739-6775859 7.50e-01 120 chr2R:21719981-21720101 9.10e-02 120 chr2L:13783631-13783751 4.80e-01 120 chrX:6986236-6986356 1.35e-01 120 chrX:1142928-1143048 5.87e-07 26_[+2(8.38e-05)]_21_[+4(2.63e-06)]_\ 5_[+1(5.16e-06)]_44 chr2L:15907740-15907860 9.53e-01 120 chr2L:17756935-17757055 3.40e-03 47_[+3(7.67e-06)]_65 chr2R:11471040-11471160 1.36e-03 49_[+4(9.19e-06)]_63 chr2R:15703082-15703202 3.48e-04 12_[+1(1.79e-05)]_37_[+5(2.43e-05)]_\ 55 chr3L:4372526-4372646 8.52e-02 53_[+1(3.32e-05)]_59 chrX:17625790-17625910 1.23e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************