******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Sp1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:1574421-1574541 1.0000 120 chr3L:12096942-12097062 1.0000 120 chr3R:23496588-23496708 1.0000 120 chr3L:11374014-11374134 1.0000 120 chrX:5083406-5083526 1.0000 120 chr3R:17122906-17123026 1.0000 120 chrX:7710561-7710681 1.0000 120 chr3L:21108588-21108708 1.0000 120 chr3R:11456691-11456811 1.0000 120 chr3R:15588720-15588840 1.0000 120 chrX:15303737-15303857 1.0000 120 chrX:12596559-12596679 1.0000 120 chr3R:4761494-4761614 1.0000 120 chr2R:6147627-6147747 1.0000 120 chr3L:12915558-12915678 1.0000 120 chr2L:5429211-5429331 1.0000 120 chr3L:6369819-6369939 1.0000 120 chr3L:10411736-10411856 1.0000 120 chrX:8866408-8866528 1.0000 120 chr3R:23763659-23763779 1.0000 120 chr3L:7994013-7994133 1.0000 120 chr3L:9033685-9033805 1.0000 120 chr3R:13934746-13934866 1.0000 120 chr3R:14918323-14918443 1.0000 120 chrX:6344422-6344542 1.0000 120 chrX:17679829-17679949 1.0000 120 chr3L:8371036-8371156 1.0000 120 chr3R:14275604-14275724 1.0000 120 chr2R:9065328-9065448 1.0000 120 chr3R:13372083-13372203 1.0000 120 chrX:1271233-1271353 1.0000 120 chrX:18273295-18273415 1.0000 120 chr3R:14398060-14398180 1.0000 120 chr2L:8326586-8326706 1.0000 120 chr2L:15385528-15385648 1.0000 120 chr3R:21649638-21649758 1.0000 120 chr3L:13213126-13213246 1.0000 120 chr2R:19620162-19620282 1.0000 120 chr3R:16154415-16154535 1.0000 120 chr3L:7961005-7961125 1.0000 120 chr3L:16015956-16016076 1.0000 120 chr2L:3341686-3341806 1.0000 120 chrX:4435082-4435202 1.0000 120 chr2L:15281083-15281203 1.0000 120 chr3R:21024272-21024392 1.0000 120 chr2L:12823727-12823847 1.0000 120 chr3L:7792341-7792461 1.0000 120 chr3L:3423139-3423259 1.0000 120 chr3L:639112-639232 1.0000 120 chr2L:17782080-17782200 1.0000 120 chrX:14118612-14118732 1.0000 120 chr3R:22194905-22195025 1.0000 120 chrX:17816489-17816609 1.0000 120 chr3R:4243283-4243403 1.0000 120 chr3L:19035626-19035746 1.0000 120 chr3L:12016331-12016451 1.0000 120 chr2L:3153035-3153155 1.0000 120 chr3L:14611423-14611543 1.0000 120 chr3R:20765478-20765598 1.0000 120 chrX:16930537-16930657 1.0000 120 chr3R:17826000-17826120 1.0000 120 chr2R:12951499-12951619 1.0000 120 chr2L:12513996-12514116 1.0000 120 chr3R:29076135-29076255 1.0000 120 chrX:8231774-8231894 1.0000 120 chrX:1612039-1612159 1.0000 120 chr2L:16271128-16271248 1.0000 120 chr3L:16177366-16177486 1.0000 120 chr3L:9675569-9675689 1.0000 120 chr3R:31308975-31309095 1.0000 120 chr2L:19140422-19140542 1.0000 120 chr3L:16174939-16175059 1.0000 120 chrX:2452881-2453001 1.0000 120 chr2L:5393452-5393572 1.0000 120 chr2R:9915201-9915321 1.0000 120 chrX:5026148-5026268 1.0000 120 chr2R:22316594-22316714 1.0000 120 chr3L:10942708-10942828 1.0000 120 chr3L:12099795-12099915 1.0000 120 chrX:17680030-17680150 1.0000 120 chr2R:11637427-11637547 1.0000 120 chr3L:13182489-13182609 1.0000 120 chr3L:17506203-17506323 1.0000 120 chr3L:10411937-10412057 1.0000 120 chr2L:4069696-4069816 1.0000 120 chr3L:3691762-3691882 1.0000 120 chr3L:2830142-2830262 1.0000 120 chr2R:8322843-8322963 1.0000 120 chr2R:14922976-14923096 1.0000 120 chrX:9675081-9675201 1.0000 120 chr3L:548483-548603 1.0000 120 chr3L:11006560-11006680 1.0000 120 chrX:17109763-17109883 1.0000 120 chr2L:7992091-7992211 1.0000 120 chrX:13936339-13936459 1.0000 120 chr3R:25651561-25651681 1.0000 120 chr3R:8029683-8029803 1.0000 120 chrX:9062796-9062916 1.0000 120 chr2L:20887407-20887527 1.0000 120 chr3L:17590363-17590483 1.0000 120 chr2L:15407662-15407782 1.0000 120 chrX:17807144-17807264 1.0000 120 chrX:17814934-17815054 1.0000 120 chrX:17760678-17760798 1.0000 120 chr3L:5851765-5851885 1.0000 120 chr3L:21060555-21060675 1.0000 120 chr2R:18168281-18168401 1.0000 120 chrX:1570442-1570562 1.0000 120 chr2L:18466359-18466479 1.0000 120 chr2L:17749100-17749220 1.0000 120 chr2R:13935277-13935397 1.0000 120 chr3R:27593336-27593456 1.0000 120 chrX:2196211-2196331 1.0000 120 chr3L:8716126-8716246 1.0000 120 chr3R:11449848-11449968 1.0000 120 chr2L:18468159-18468279 1.0000 120 chrX:2648090-2648210 1.0000 120 chr2R:6693186-6693306 1.0000 120 chr2L:13844006-13844126 1.0000 120 chr2L:18678408-18678528 1.0000 120 chrX:12507750-12507870 1.0000 120 chr3R:14048942-14049062 1.0000 120 chr2L:423285-423405 1.0000 120 chr2R:6556930-6557050 1.0000 120 chr2L:9981916-9982036 1.0000 120 chrX:18256669-18256789 1.0000 120 chr3L:5633712-5633832 1.0000 120 chrX:13302674-13302794 1.0000 120 chr2R:19913808-19913928 1.0000 120 chrX:17551159-17551279 1.0000 120 chr2L:3781523-3781643 1.0000 120 chr3L:15670570-15670690 1.0000 120 chr2L:18003491-18003611 1.0000 120 chrX:6030174-6030294 1.0000 120 chr3L:17922778-17922898 1.0000 120 chr3L:10697061-10697181 1.0000 120 chrX:18483620-18483740 1.0000 120 chr3L:2873206-2873326 1.0000 120 chr3L:5637647-5637767 1.0000 120 chr3R:8142242-8142362 1.0000 120 chrX:12923620-12923740 1.0000 120 chrX:18540366-18540486 1.0000 120 chr2R:10237791-10237911 1.0000 120 chr2L:11399623-11399743 1.0000 120 chr2L:7419508-7419628 1.0000 120 chr2L:15304511-15304631 1.0000 120 chrX:8667864-8667984 1.0000 120 chr3R:10476092-10476212 1.0000 120 chr2L:18003694-18003814 1.0000 120 chr3R:27171227-27171347 1.0000 120 chr3R:19283622-19283742 1.0000 120 chr3L:15174236-15174356 1.0000 120 chr2L:650988-651108 1.0000 120 chr2L:8529095-8529215 1.0000 120 chr2L:7879692-7879812 1.0000 120 chrX:5026835-5026955 1.0000 120 chr3R:24549875-24549995 1.0000 120 chr2L:11328480-11328600 1.0000 120 chr2L:634268-634388 1.0000 120 chrX:5025469-5025589 1.0000 120 chrX:8063290-8063410 1.0000 120 chr2R:15842601-15842721 1.0000 120 chr2R:6994758-6994878 1.0000 120 chrX:17879366-17879486 1.0000 120 chr3L:14610571-14610691 1.0000 120 chr2L:7909451-7909571 1.0000 120 chrX:15335979-15336099 1.0000 120 chr3L:19557315-19557435 1.0000 120 chr3L:15209140-15209260 1.0000 120 chr2L:11395798-11395918 1.0000 120 chr3L:8157162-8157282 1.0000 120 chr3R:10466407-10466527 1.0000 120 chr2R:11178199-11178319 1.0000 120 chr2L:12602310-12602430 1.0000 120 chrX:8730425-8730545 1.0000 120 chrX:13993251-13993371 1.0000 120 chr3R:29283292-29283412 1.0000 120 chrX:6983964-6984084 1.0000 120 chr3L:21594563-21594683 1.0000 120 chr2R:22529810-22529930 1.0000 120 chr2L:10615923-10616043 1.0000 120 chrX:18272550-18272670 1.0000 120 chr3L:6359331-6359451 1.0000 120 chr2L:1668605-1668725 1.0000 120 chr2L:5501455-5501575 1.0000 120 chr2L:10791431-10791551 1.0000 120 chr3L:3343408-3343528 1.0000 120 chrX:13312318-13312438 1.0000 120 chr3R:26859353-26859473 1.0000 120 chr3R:30843192-30843312 1.0000 120 chr3L:2835121-2835241 1.0000 120 chr3L:15762953-15763073 1.0000 120 chr2L:20956901-20957021 1.0000 120 chrX:9656478-9656598 1.0000 120 chr3R:6950289-6950409 1.0000 120 chr3L:14611624-14611744 1.0000 120 chr2R:19616276-19616396 1.0000 120 chr2R:10600452-10600572 1.0000 120 chr3R:12443300-12443420 1.0000 120 chr2L:16819833-16819953 1.0000 120 chr3R:13793448-13793568 1.0000 120 chr3L:10675821-10675941 1.0000 120 chrX:12663025-12663145 1.0000 120 chr2L:8705024-8705144 1.0000 120 chr2L:8403779-8403899 1.0000 120 chr3R:25633991-25634111 1.0000 120 chrX:6984165-6984285 1.0000 120 chrX:19160039-19160159 1.0000 120 chr3L:2831781-2831901 1.0000 120 chr2R:14247577-14247697 1.0000 120 chr3L:22840007-22840127 1.0000 120 chr2L:11222219-11222339 1.0000 120 chr3L:728034-728154 1.0000 120 chr3R:8858100-8858220 1.0000 120 chr3R:30281535-30281655 1.0000 120 chrX:10728206-10728326 1.0000 120 chr3L:16176623-16176743 1.0000 120 chr3R:8154120-8154240 1.0000 120 chr3L:19046506-19046626 1.0000 120 chr3L:12616573-12616693 1.0000 120 chrX:14750611-14750731 1.0000 120 chr2R:7147342-7147462 1.0000 120 chr3R:5100491-5100611 1.0000 120 chr3L:19650743-19650863 1.0000 120 chr2L:18966971-18967091 1.0000 120 chr3R:13941502-13941622 1.0000 120 chr2R:18304511-18304631 1.0000 120 chr3R:23221869-23221989 1.0000 120 chr3L:5863080-5863200 1.0000 120 chr2L:7973920-7974040 1.0000 120 chr2L:10616123-10616243 1.0000 120 chr3L:14055344-14055464 1.0000 120 chrX:12760779-12760899 1.0000 120 chr2L:20463485-20463605 1.0000 120 chr3L:21099055-21099175 1.0000 120 chr2R:21569763-21569883 1.0000 120 chr2L:18628284-18628404 1.0000 120 chr2R:18256959-18257079 1.0000 120 chr3R:13841069-13841189 1.0000 120 chr2R:9674803-9674923 1.0000 120 chr3L:1388247-1388367 1.0000 120 chr3R:8810945-8811065 1.0000 120 chr2L:5249912-5250032 1.0000 120 chrX:5897184-5897304 1.0000 120 chr3R:23508454-23508574 1.0000 120 chrX:5082415-5082535 1.0000 120 chrX:13988924-13989044 1.0000 120 chr2L:12829350-12829470 1.0000 120 chr2R:20136859-20136979 1.0000 120 chr2L:6324491-6324611 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Sp1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Sp1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.354 C 0.151 G 0.151 T 0.344 Background letter frequencies (from file dataset with add-one prior applied): A 0.354 C 0.151 G 0.151 T 0.344 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF KNSGSVGC MEME-1 width = 8 sites = 36 llr = 320 E-value = 4.0e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif KNSGSVGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :3:::5:: pos.-specific C 234163:a probability G 526943a: matrix T 33:::::: bits 2.7 ** 2.5 ** 2.2 * ** 1.9 ** ** Relative 1.6 *** ** Entropy 1.4 *** ** (12.8 bits) 1.1 *** ** 0.8 * *** ** 0.5 * ****** 0.3 * ****** 0.0 -------- Multilevel GAGGCAGC consensus TCC GG sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KNSGSVGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:8403779-8403899 3 2.70e-07 TT GCGGCGGC GAtgcgttcg chrX:13988924-13989044 9 1.17e-06 cagcagca gcggcagc agcagcacac chr2L:18003491-18003611 45 1.17e-06 CAAGTTTCTT GCGGCAGC GACAACTGGC chr3R:20765478-20765598 82 1.17e-06 AGCAAGGCAA GCGGCAGC AACACCGCAT chr2R:11178199-11178319 88 3.43e-06 ATTTGCTTTT GCGGGCGC ACATTGGATT chr2R:9915201-9915321 111 3.43e-06 GCAAATATTG GCGGGCGC GT chr3L:2831781-2831901 89 1.20e-05 GTTGGCAGAA GAGGCAGC TTCAGAAAAA chr2L:7419508-7419628 35 1.20e-05 ATATTTATCG GTGGCAGC TTAAAACAGT chr3L:3691762-3691882 14 1.20e-05 TATTCTGGTT GGGGGGGC ATTAGCAGCT chrX:6344422-6344542 37 1.48e-05 CGATCAATTA GACGCGGC AAATCTGAAT chr3L:9033685-9033805 85 1.76e-05 ACTAACAAAA GTCGCCGC ACTTTCATAG chr3R:11456691-11456811 9 1.76e-05 AAGTACCC GCCGGAGC AACAACAAAA chrX:13302674-13302794 95 2.56e-05 TTGGGGGTGC GGCGGGGC GTTGAGTAAT chrX:6030174-6030294 8 2.82e-05 CGAATAA GGCGGCGC GTCAATGATG chr3L:10675821-10675941 16 3.36e-05 AAACAAAAGG CAGGCGGC TAAAAAAAGT chrX:1612039-1612159 104 3.36e-05 aTGAAACATA CAGGCGGC ATAAGTATA chr2L:8529095-8529215 6 4.19e-05 TGTTG TCGGGGGC TGATGGAGTT chrX:18256669-18256789 72 4.19e-05 ACATTCAGCA GTCGGCGC GTCAGCTGGA chr2L:3153035-3153155 93 4.75e-05 CACCAGCTAG TCCGCAGC CCTGATTTCT chr2L:5501455-5501575 43 5.71e-05 AGATATTTCG TGGGCAGC AGATAACTTG chrX:15303737-15303857 13 5.71e-05 GCTTTATTTT GACGGAGC ACTTGAATTT chrX:8667864-8667984 54 6.42e-05 TTCACATCGA TTGGCCGC ATAATCTGCT chr2L:6324491-6324611 100 8.03e-05 CCTTAATTTA TTGGCAGC ATTGTGTTTG chrX:12760779-12760899 27 8.03e-05 ATGAACACCG CGCGGGGC AACTTATGta chr2R:19616276-19616396 50 8.03e-05 CAAAGAATCG TTGGCAGC GCCaaaaaaa chrX:2196211-2196331 1 8.03e-05 . TTGGCAGC TTATTGCTCC chr2R:18168281-18168401 48 8.57e-05 CAATTGTATA TACGCGGC AAGATAAATT chr3R:23221869-23221989 7 9.35e-05 GTTTGT TACGCCGC GTTTGGCAAT chr3R:29283292-29283412 24 9.35e-05 CTTCATTCGG CTGGGAGC CCAGCATCCT chr3R:16154415-16154535 87 1.00e-04 GACATGCAGT TGGGGAGC AGGCGAAGTT chr2R:22529810-22529930 106 1.12e-04 CTGTTGCTGT TTCGCAGC AAGGAGC chr2R:15842601-15842721 14 1.27e-04 TGCCTGCCTG GTGCCCGC TGCCCACCGC chr3L:10411937-10412057 83 1.27e-04 ATGGCAGATT GAGCCCGC TTGTTCAATG chr2R:9065328-9065448 84 1.27e-04 GATGCCTGGA CACGGAGC GTATGCGTGA chr3L:548483-548603 37 1.61e-04 CGCCCGATTT CCCCCAGC GCCTCCCCTT chr3L:7792341-7792461 47 1.67e-04 TTTAAAGTTT CAGCCGGC TAAAGTGTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KNSGSVGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8403779-8403899 2.7e-07 2_[+1]_110 chrX:13988924-13989044 1.2e-06 8_[+1]_104 chr2L:18003491-18003611 1.2e-06 44_[+1]_68 chr3R:20765478-20765598 1.2e-06 81_[+1]_31 chr2R:11178199-11178319 3.4e-06 87_[+1]_25 chr2R:9915201-9915321 3.4e-06 110_[+1]_2 chr3L:2831781-2831901 1.2e-05 88_[+1]_24 chr2L:7419508-7419628 1.2e-05 34_[+1]_78 chr3L:3691762-3691882 1.2e-05 13_[+1]_99 chrX:6344422-6344542 1.5e-05 36_[+1]_76 chr3L:9033685-9033805 1.8e-05 84_[+1]_28 chr3R:11456691-11456811 1.8e-05 8_[+1]_104 chrX:13302674-13302794 2.6e-05 94_[+1]_18 chrX:6030174-6030294 2.8e-05 7_[+1]_105 chr3L:10675821-10675941 3.4e-05 15_[+1]_97 chrX:1612039-1612159 3.4e-05 103_[+1]_9 chr2L:8529095-8529215 4.2e-05 5_[+1]_107 chrX:18256669-18256789 4.2e-05 71_[+1]_41 chr2L:3153035-3153155 4.7e-05 92_[+1]_20 chr2L:5501455-5501575 5.7e-05 42_[+1]_70 chrX:15303737-15303857 5.7e-05 12_[+1]_100 chrX:8667864-8667984 6.4e-05 53_[+1]_59 chr2L:6324491-6324611 8e-05 99_[+1]_13 chrX:12760779-12760899 8e-05 26_[+1]_86 chr2R:19616276-19616396 8e-05 49_[+1]_63 chrX:2196211-2196331 8e-05 [+1]_112 chr2R:18168281-18168401 8.6e-05 47_[+1]_65 chr3R:23221869-23221989 9.3e-05 6_[+1]_106 chr3R:29283292-29283412 9.3e-05 23_[+1]_89 chr3R:16154415-16154535 0.0001 86_[+1]_26 chr2R:22529810-22529930 0.00011 105_[+1]_7 chr2R:15842601-15842721 0.00013 13_[+1]_99 chr3L:10411937-10412057 0.00013 82_[+1]_30 chr2R:9065328-9065448 0.00013 83_[+1]_29 chr3L:548483-548603 0.00016 36_[+1]_76 chr3L:7792341-7792461 0.00017 46_[+1]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KNSGSVGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KNSGSVGC width=8 seqs=36 chr2L:8403779-8403899 ( 3) GCGGCGGC 1 chrX:13988924-13989044 ( 9) GCGGCAGC 1 chr2L:18003491-18003611 ( 45) GCGGCAGC 1 chr3R:20765478-20765598 ( 82) GCGGCAGC 1 chr2R:11178199-11178319 ( 88) GCGGGCGC 1 chr2R:9915201-9915321 ( 111) GCGGGCGC 1 chr3L:2831781-2831901 ( 89) GAGGCAGC 1 chr2L:7419508-7419628 ( 35) GTGGCAGC 1 chr3L:3691762-3691882 ( 14) GGGGGGGC 1 chrX:6344422-6344542 ( 37) GACGCGGC 1 chr3L:9033685-9033805 ( 85) GTCGCCGC 1 chr3R:11456691-11456811 ( 9) GCCGGAGC 1 chrX:13302674-13302794 ( 95) GGCGGGGC 1 chrX:6030174-6030294 ( 8) GGCGGCGC 1 chr3L:10675821-10675941 ( 16) CAGGCGGC 1 chrX:1612039-1612159 ( 104) CAGGCGGC 1 chr2L:8529095-8529215 ( 6) TCGGGGGC 1 chrX:18256669-18256789 ( 72) GTCGGCGC 1 chr2L:3153035-3153155 ( 93) TCCGCAGC 1 chr2L:5501455-5501575 ( 43) TGGGCAGC 1 chrX:15303737-15303857 ( 13) GACGGAGC 1 chrX:8667864-8667984 ( 54) TTGGCCGC 1 chr2L:6324491-6324611 ( 100) TTGGCAGC 1 chrX:12760779-12760899 ( 27) CGCGGGGC 1 chr2R:19616276-19616396 ( 50) TTGGCAGC 1 chrX:2196211-2196331 ( 1) TTGGCAGC 1 chr2R:18168281-18168401 ( 48) TACGCGGC 1 chr3R:23221869-23221989 ( 7) TACGCCGC 1 chr3R:29283292-29283412 ( 24) CTGGGAGC 1 chr3R:16154415-16154535 ( 87) TGGGGAGC 1 chr2R:22529810-22529930 ( 106) TTCGCAGC 1 chr2R:15842601-15842721 ( 14) GTGCCCGC 1 chr3L:10411937-10412057 ( 83) GAGCCCGC 1 chr2R:9065328-9065448 ( 84) CACGGAGC 1 chr3L:548483-548603 ( 37) CCCCCAGC 1 chr3L:7792341-7792461 ( 47) CAGCCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KNSGSVGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0197 E= 4.0e-005 -1181 36 173 -17 -35 88 14 -31 -1181 136 202 -1181 -1181 -44 256 -1181 -1181 208 126 -1181 42 73 88 -1181 -1181 -1181 273 -1181 -1181 273 -1181 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KNSGSVGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 4.0e-005 0.000000 0.194444 0.500000 0.305556 0.277778 0.277778 0.166667 0.277778 0.000000 0.388889 0.611111 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.638889 0.361111 0.000000 0.472222 0.250000 0.277778 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KNSGSVGC MEME-1 regular expression -------------------------------------------------------------------------------- [GT][ACT][GC]G[CG][AGC]GC -------------------------------------------------------------------------------- Time 7.67 secs. ******************************************************************************** ******************************************************************************** MOTIF MGCGCHGS MEME-2 width = 8 sites = 12 llr = 128 E-value = 2.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif MGCGCHGS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3::::3:: pos.-specific C 7:a38417 probability G :a:82:93 matrix T :::::3:: bits 2.7 ** 2.5 ** 2.2 ** * * 1.9 **** ** Relative 1.6 **** ** Entropy 1.4 ***** ** (15.4 bits) 1.1 ***** ** 0.8 ***** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCGCCGC consensus A C A G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCGCHGS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:8529095-8529215 82 1.44e-06 GACAGACGTG CGCGCAGC TCGATCGATC chrX:15303737-15303857 60 1.44e-06 TCATCTACGT CGCCCCGC CGAAATACAA chr2R:9915201-9915321 62 2.06e-06 TGCGCCTTTT CGCGCTGC TGTATAAAGT chrX:13993251-13993371 69 2.69e-06 GCAAAAGGAA AGCGCCGC TTCTTTTTGT chr3L:17590363-17590483 61 2.69e-06 TGTACTTTAT AGCGCCGC AGTAGATTCT chr2L:8403779-8403899 92 3.87e-06 AAGTGTAGCG CGCGCAGG CAACAGCGTG chrX:18483620-18483740 80 6.02e-06 TATCACAAAT CGCGGCGG TATGGAATCT chr2L:15385528-15385648 50 6.91e-06 ATAATATAAA CGCCCTGC ATCTAGATTG chr3L:639112-639232 79 9.03e-06 CACTTACGAA AGCCCCGC AACATTTTTT chr3R:23221869-23221989 99 1.26e-05 GTCTGTCCAG CGCGGTGC TTTTATCAAG chr2R:11178199-11178319 47 1.63e-05 AGTCTATGAA AGCGCAGG GCTTCCCCAA chrX:1271233-1271353 27 2.74e-05 TCCAAAACGA CGCGCACG aaacgaaaaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCGCHGS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8529095-8529215 1.4e-06 81_[+2]_31 chrX:15303737-15303857 1.4e-06 59_[+2]_53 chr2R:9915201-9915321 2.1e-06 61_[+2]_51 chrX:13993251-13993371 2.7e-06 68_[+2]_44 chr3L:17590363-17590483 2.7e-06 60_[+2]_52 chr2L:8403779-8403899 3.9e-06 91_[+2]_21 chrX:18483620-18483740 6e-06 79_[+2]_33 chr2L:15385528-15385648 6.9e-06 49_[+2]_63 chr3L:639112-639232 9e-06 78_[+2]_34 chr3R:23221869-23221989 1.3e-05 98_[+2]_14 chr2R:11178199-11178319 1.6e-05 46_[+2]_66 chrX:1271233-1271353 2.7e-05 26_[+2]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCGCHGS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MGCGCHGS width=8 seqs=12 chr2L:8529095-8529215 ( 82) CGCGCAGC 1 chrX:15303737-15303857 ( 60) CGCCCCGC 1 chr2R:9915201-9915321 ( 62) CGCGCTGC 1 chrX:13993251-13993371 ( 69) AGCGCCGC 1 chr3L:17590363-17590483 ( 61) AGCGCCGC 1 chr2L:8403779-8403899 ( 92) CGCGCAGG 1 chrX:18483620-18483740 ( 80) CGCGGCGG 1 chr2L:15385528-15385648 ( 50) CGCCCTGC 1 chr3L:639112-639232 ( 79) AGCCCCGC 1 chr3R:23221869-23221989 ( 99) CGCGGTGC 1 chr2R:11178199-11178319 ( 47) AGCGCAGG 1 chrX:1271233-1271353 ( 27) CGCGCACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCGCHGS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3003 E= 2.8e+001 -9 214 -1023 -1023 -1023 -1023 273 -1023 -1023 273 -1023 -1023 -1023 73 231 -1023 -1023 246 14 -1023 -9 146 -1023 -46 -1023 -86 260 -1023 -1023 214 114 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCGCHGS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.8e+001 0.333333 0.666667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.833333 0.166667 0.000000 0.333333 0.416667 0.000000 0.250000 0.000000 0.083333 0.916667 0.000000 0.000000 0.666667 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCGCHGS MEME-2 regular expression -------------------------------------------------------------------------------- [CA]GC[GC]C[CAT]G[CG] -------------------------------------------------------------------------------- Time 14.00 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCCGCCG MEME-3 width = 8 sites = 2 llr = 29 E-value = 3.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCCGCCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:aa:aa: probability G ::::a::a matrix T :a:::::: bits 2.7 * ****** 2.5 * ****** 2.2 * ****** 1.9 * ****** Relative 1.6 ******** Entropy 1.4 ******** (20.6 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTCCGCCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCGCCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6324491-6324611 15 6.16e-07 CACATGCACA CTCCGCCG ACGCGTAGGC chr3R:23221869-23221989 27 6.16e-07 TTGGCAATTT CTCCGCCG TCGAAATCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCGCCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6324491-6324611 6.2e-07 14_[+3]_98 chr3R:23221869-23221989 6.2e-07 26_[+3]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCGCCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCCGCCG width=8 seqs=2 chr2L:6324491-6324611 ( 15) CTCCGCCG 1 chr3R:23221869-23221989 ( 27) CTCCGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCGCCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 3.5e+004 -765 272 -765 -765 -765 -765 -765 154 -765 272 -765 -765 -765 272 -765 -765 -765 -765 272 -765 -765 272 -765 -765 -765 272 -765 -765 -765 -765 272 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCGCCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.5e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCGCCG MEME-3 regular expression -------------------------------------------------------------------------------- CTCCGCCG -------------------------------------------------------------------------------- Time 20.24 secs. ******************************************************************************** ******************************************************************************** MOTIF GCMASMAC MEME-4 width = 8 sites = 27 llr = 238 E-value = 4.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCMASMAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::37:36: pos.-specific C :a6357:8 probability G a:115:12 matrix T ::::::2: bits 2.7 ** 2.5 ** 2.2 ** 1.9 ** * Relative 1.6 ** * * Entropy 1.4 ** ** * (12.7 bits) 1.1 *** ** * 0.8 ****** * 0.5 ****** * 0.3 ******** 0.0 -------- Multilevel GCCAGCAC consensus ACCAT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMASMAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19160039-19160159 87 3.60e-06 CTTAAAGCAC GCCACCAC ATATGAGTTT chr2L:6324491-6324611 64 9.55e-06 GAGAATTTTC GCCCGCTC TCCGATTGTT chr3L:2873206-2873326 66 9.55e-06 CGCCATTTTT GCCCGCTC TTGTATCTTT chrX:7710561-7710681 92 1.23e-05 CAAAAAAAAT GCGAGCAC TCACAATAAC chr3L:3691762-3691882 35 2.00e-05 AGCAGCTATA GCCGCCAC ATACTACATG chr3R:4761494-4761614 77 2.00e-05 ttttttGACT GCCAGCAG CTGTGCACAT chr3L:10675821-10675941 113 3.12e-05 CATCTCCCTC GCACGCAC chr3R:29283292-29283412 89 3.12e-05 CTCAGTTGAA GCAACCAC TCTAATATAC chrX:8063290-8063410 91 3.12e-05 AAGCACGCAG GCACGCAC ACCCACACAC chrX:2196211-2196331 58 3.12e-05 TCGAAACAGA GCCAGAAC AGGAGTGCAA chr2R:18168281-18168401 95 3.12e-05 AAACATTGAA GCCAGAAC ATTATCTTCG chr3L:639112-639232 1 3.12e-05 . gccaccag ctacaaacac chrX:5083406-5083526 100 3.12e-05 TAAAAGGACT GCCAGAAC TTGGAGCCCA chr2L:9981916-9982036 18 3.83e-05 ATCCTGTCTT GCACCCAC GACGTGGTCA chrX:17760678-17760798 9 3.83e-05 GTGCTGTG GCCACAAC AATGTTTTTT chr2R:9065328-9065448 103 3.83e-05 TATGCGTGAT GCCCGAAC TAAAGTGCAG chr3L:9675569-9675689 56 4.07e-05 aaaaaaaaGA GCGAGCGC GACGTCAATG chrX:12923620-12923740 12 4.40e-05 CTAAGCTTCG GCCAGCGG CCTTCGCCAA chr2L:7909451-7909571 92 4.88e-05 CCAAGGAACC GCAACCGC AGACAAAAGA chr3R:22194905-22195025 103 6.20e-05 TACTATTTCG GCGACCTC AAGTGTGTGT chr3R:13841069-13841189 113 7.29e-05 TAATAATATG GCCACCTG chr2L:3781523-3781643 10 7.29e-05 ATTAATGCA GCCAGATC GCATACACGA chrX:18256669-18256789 110 8.61e-05 TCCTGACTTC GCCCCATC CTG chr2L:18003491-18003611 82 9.88e-05 CTTGTGACTG GCAAGCAG CAACTTTGGA chr3L:17590363-17590483 6 1.22e-04 AAGAA GCGACAAC TCGGATGCCC chr3L:17506203-17506323 54 1.42e-04 CGAAAAGTAT GCAACAAC ATAATTTTTC chrX:8667864-8667984 27 1.54e-04 ATTTATGCTT GCAGCCGC ATAACAATCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMASMAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19160039-19160159 3.6e-06 86_[+4]_26 chr2L:6324491-6324611 9.5e-06 63_[+4]_49 chr3L:2873206-2873326 9.5e-06 65_[+4]_47 chrX:7710561-7710681 1.2e-05 91_[+4]_21 chr3L:3691762-3691882 2e-05 34_[+4]_78 chr3R:4761494-4761614 2e-05 76_[+4]_36 chr3L:10675821-10675941 3.1e-05 112_[+4] chr3R:29283292-29283412 3.1e-05 88_[+4]_24 chrX:8063290-8063410 3.1e-05 90_[+4]_22 chrX:2196211-2196331 3.1e-05 57_[+4]_55 chr2R:18168281-18168401 3.1e-05 94_[+4]_18 chr3L:639112-639232 3.1e-05 [+4]_112 chrX:5083406-5083526 3.1e-05 99_[+4]_13 chr2L:9981916-9982036 3.8e-05 17_[+4]_95 chrX:17760678-17760798 3.8e-05 8_[+4]_104 chr2R:9065328-9065448 3.8e-05 102_[+4]_10 chr3L:9675569-9675689 4.1e-05 55_[+4]_57 chrX:12923620-12923740 4.4e-05 11_[+4]_101 chr2L:7909451-7909571 4.9e-05 91_[+4]_21 chr3R:22194905-22195025 6.2e-05 102_[+4]_10 chr3R:13841069-13841189 7.3e-05 112_[+4] chr2L:3781523-3781643 7.3e-05 9_[+4]_103 chrX:18256669-18256789 8.6e-05 109_[+4]_3 chr2L:18003491-18003611 9.9e-05 81_[+4]_31 chr3L:17590363-17590483 0.00012 5_[+4]_107 chr3L:17506203-17506323 0.00014 53_[+4]_59 chrX:8667864-8667984 0.00015 26_[+4]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMASMAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCMASMAC width=8 seqs=27 chrX:19160039-19160159 ( 87) GCCACCAC 1 chr2L:6324491-6324611 ( 64) GCCCGCTC 1 chr3L:2873206-2873326 ( 66) GCCCGCTC 1 chrX:7710561-7710681 ( 92) GCGAGCAC 1 chr3L:3691762-3691882 ( 35) GCCGCCAC 1 chr3R:4761494-4761614 ( 77) GCCAGCAG 1 chr3L:10675821-10675941 ( 113) GCACGCAC 1 chr3R:29283292-29283412 ( 89) GCAACCAC 1 chrX:8063290-8063410 ( 91) GCACGCAC 1 chrX:2196211-2196331 ( 58) GCCAGAAC 1 chr2R:18168281-18168401 ( 95) GCCAGAAC 1 chr3L:639112-639232 ( 1) GCCACCAG 1 chrX:5083406-5083526 ( 100) GCCAGAAC 1 chr2L:9981916-9982036 ( 18) GCACCCAC 1 chrX:17760678-17760798 ( 9) GCCACAAC 1 chr2R:9065328-9065448 ( 103) GCCCGAAC 1 chr3L:9675569-9675689 ( 56) GCGAGCGC 1 chrX:12923620-12923740 ( 12) GCCAGCGG 1 chr2L:7909451-7909571 ( 92) GCAACCGC 1 chr3R:22194905-22195025 ( 103) GCGACCTC 1 chr3R:13841069-13841189 ( 113) GCCACCTG 1 chr2L:3781523-3781643 ( 10) GCCAGATC 1 chrX:18256669-18256789 ( 110) GCCCCATC 1 chr2L:18003491-18003611 ( 82) GCAAGCAG 1 chr3L:17590363-17590483 ( 6) GCGACAAC 1 chr3L:17506203-17506323 ( 54) GCAACAAC 1 chrX:8667864-8667984 ( 27) GCAGCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMASMAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6812 E= 4.7e+004 -1140 -1140 273 -1140 -1140 273 -1140 -1140 -26 188 -3 -1140 91 78 -103 -1140 -1140 167 178 -1140 -9 214 -1140 -1140 83 -1140 -3 -63 -1140 243 29 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMASMAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 4.7e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.296296 0.555556 0.148148 0.000000 0.666667 0.259259 0.074074 0.000000 0.000000 0.481481 0.518519 0.000000 0.333333 0.666667 0.000000 0.000000 0.629630 0.000000 0.148148 0.222222 0.000000 0.814815 0.185185 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMASMAC MEME-4 regular expression -------------------------------------------------------------------------------- GC[CA][AC][GC][CA][AT]C -------------------------------------------------------------------------------- Time 26.47 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGTGGGS MEME-5 width = 8 sites = 6 llr = 71 E-value = 4.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGTGGGS MEME-5 Description -------------------------------------------------------------------------------- Simplified A 2::::2:: pos.-specific C :::::::3 probability G :aa:a8a7 matrix T 8::a:::: bits 2.7 ** * * 2.5 ** * * 2.2 ** * * 1.9 ** **** Relative 1.6 ******* Entropy 1.4 ******* (17.0 bits) 1.1 ******* 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGGTGGGG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTGGGS MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8730425-8730545 7 1.40e-06 AACTGG TGGTGGGG AGTTAACATA chr2R:19913808-19913928 16 1.40e-06 ACAGTGGTTT TGGTGGGG TTCATGTAGG chr3L:19650743-19650863 74 2.81e-06 tttttttttt tGGTGGGC GTGGCTGGTG chrX:13302674-13302794 59 2.81e-06 ATACCGCAAA TGGTGGGC GGAGGGCGGC chr3L:7961005-7961125 83 4.25e-06 ACCCGCAAGA AGGTGGGG AGAGTGAATC chr2L:13844006-13844126 38 8.98e-06 TGACACAAAA TGGTGAGG TATTGAGTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTGGGS MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8730425-8730545 1.4e-06 6_[+5]_106 chr2R:19913808-19913928 1.4e-06 15_[+5]_97 chr3L:19650743-19650863 2.8e-06 73_[+5]_39 chrX:13302674-13302794 2.8e-06 58_[+5]_54 chr3L:7961005-7961125 4.2e-06 82_[+5]_30 chr2L:13844006-13844126 9e-06 37_[+5]_75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTGGGS MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGTGGGS width=8 seqs=6 chrX:8730425-8730545 ( 7) TGGTGGGG 1 chr2R:19913808-19913928 ( 16) TGGTGGGG 1 chr3L:19650743-19650863 ( 74) TGGTGGGC 1 chrX:13302674-13302794 ( 59) TGGTGGGC 1 chr3L:7961005-7961125 ( 83) AGGTGGGG 1 chr2L:13844006-13844126 ( 38) TGGTGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTGGGS MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.6482 E= 4.3e+004 -108 -923 -923 128 -923 -923 273 -923 -923 -923 273 -923 -923 -923 -923 154 -923 -923 273 -923 -108 -923 246 -923 -923 -923 273 -923 -923 114 214 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTGGGS MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.3e+004 0.166667 0.000000 0.000000 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTGGGS MEME-5 regular expression -------------------------------------------------------------------------------- TGGTGGG[GC] -------------------------------------------------------------------------------- Time 32.65 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1574421-1574541 5.29e-02 120 chr3L:12096942-12097062 1.00e+00 120 chr3R:23496588-23496708 9.86e-01 120 chr3L:11374014-11374134 1.00e+00 120 chrX:5083406-5083526 3.93e-03 75_[+4(3.83e-05)]_16_[+4(3.12e-05)]_\ 13 chr3R:17122906-17123026 9.07e-01 120 chrX:7710561-7710681 5.25e-02 91_[+4(1.23e-05)]_21 chr3L:21108588-21108708 1.00e+00 120 chr3R:11456691-11456811 1.84e-05 8_[+1(1.76e-05)]_104 chr3R:15588720-15588840 9.98e-01 120 chrX:15303737-15303857 2.11e-07 12_[+1(5.71e-05)]_39_[+2(1.44e-06)]_\ 53 chrX:12596559-12596679 9.82e-01 120 chr3R:4761494-4761614 2.08e-03 76_[+4(2.00e-05)]_36 chr2R:6147627-6147747 9.91e-01 120 chr3L:12915558-12915678 9.94e-01 120 chr2L:5429211-5429331 3.55e-01 120 chr3L:6369819-6369939 5.54e-01 120 chr3L:10411736-10411856 1.00e+00 120 chrX:8866408-8866528 1.00e+00 120 chr3R:23763659-23763779 9.27e-01 120 chr3L:7994013-7994133 6.01e-01 120 chr3L:9033685-9033805 3.30e-03 84_[+1(1.76e-05)]_28 chr3R:13934746-13934866 4.70e-01 120 chr3R:14918323-14918443 1.00e+00 120 chrX:6344422-6344542 8.29e-04 36_[+1(1.48e-05)]_76 chrX:17679829-17679949 7.41e-01 120 chr3L:8371036-8371156 5.71e-01 120 chr3R:14275604-14275724 9.02e-01 120 chr2R:9065328-9065448 2.75e-03 102_[+4(3.83e-05)]_10 chr3R:13372083-13372203 4.74e-01 120 chrX:1271233-1271353 1.49e-02 26_[+2(2.74e-05)]_86 chrX:18273295-18273415 5.48e-01 120 chr3R:14398060-14398180 3.47e-01 120 chr2L:8326586-8326706 6.33e-01 120 chr2L:15385528-15385648 3.46e-02 49_[+2(6.91e-06)]_63 chr3R:21649638-21649758 1.00e+00 120 chr3L:13213126-13213246 9.74e-01 120 chr2R:19620162-19620282 9.76e-01 120 chr3R:16154415-16154535 1.22e-02 120 chr3L:7961005-7961125 4.64e-04 82_[+5(4.25e-06)]_30 chr3L:16015956-16016076 9.99e-01 120 chr2L:3341686-3341806 4.26e-01 120 chrX:4435082-4435202 5.81e-01 120 chr2L:15281083-15281203 9.82e-01 120 chr3R:21024272-21024392 1.77e-01 120 chr2L:12823727-12823847 1.00e+00 120 chr3L:7792341-7792461 2.64e-02 120 chr3L:3423139-3423259 9.99e-01 120 chr3L:639112-639232 2.45e-04 [+4(3.12e-05)]_70_[+2(9.03e-06)]_34 chr2L:17782080-17782200 9.97e-01 120 chrX:14118612-14118732 6.02e-01 120 chr3R:22194905-22195025 2.37e-02 102_[+4(6.20e-05)]_10 chrX:17816489-17816609 6.58e-01 120 chr3R:4243283-4243403 9.38e-01 120 chr3L:19035626-19035746 9.99e-01 120 chr3L:12016331-12016451 6.53e-01 120 chr2L:3153035-3153155 3.62e-03 92_[+1(4.75e-05)]_20 chr3L:14611423-14611543 1.00e+00 120 chr3R:20765478-20765598 6.51e-05 81_[+1(1.17e-06)]_31 chrX:16930537-16930657 6.63e-01 120 chr3R:17826000-17826120 9.87e-01 120 chr2R:12951499-12951619 3.14e-01 120 chr2L:12513996-12514116 1.18e-02 120 chr3R:29076135-29076255 5.38e-01 120 chrX:8231774-8231894 1.68e-01 120 chrX:1612039-1612159 4.97e-03 103_[+1(3.36e-05)]_9 chr2L:16271128-16271248 9.28e-01 120 chr3L:16177366-16177486 9.92e-01 120 chr3L:9675569-9675689 7.72e-03 55_[+4(4.07e-05)]_57 chr3R:31308975-31309095 8.16e-01 120 chr2L:19140422-19140542 8.55e-01 120 chr3L:16174939-16175059 1.00e+00 120 chrX:2452881-2453001 4.18e-01 120 chr2L:5393452-5393572 1.00e+00 120 chr2R:9915201-9915321 2.44e-08 61_[+2(2.06e-06)]_41_[+1(3.43e-06)]_\ 2 chrX:5026148-5026268 9.94e-01 120 chr2R:22316594-22316714 1.00e+00 120 chr3L:10942708-10942828 8.80e-01 120 chr3L:12099795-12099915 9.81e-01 120 chrX:17680030-17680150 1.71e-01 120 chr2R:11637427-11637547 9.39e-01 120 chr3L:13182489-13182609 3.23e-01 120 chr3L:17506203-17506323 4.91e-01 120 chr3L:10411937-10412057 2.82e-03 120 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chr3R:29283292-29283412 1.92e-05 28_[+2(2.16e-05)]_52_[+4(3.12e-05)]_\ 24 chrX:6983964-6984084 4.57e-01 120 chr3L:21594563-21594683 1.98e-03 120 chr2R:22529810-22529930 1.20e-02 120 chr2L:10615923-10616043 1.00e-01 120 chrX:18272550-18272670 4.74e-01 120 chr3L:6359331-6359451 1.70e-01 120 chr2L:1668605-1668725 4.92e-01 120 chr2L:5501455-5501575 2.87e-03 42_[+1(5.71e-05)]_70 chr2L:10791431-10791551 1.00e+00 120 chr3L:3343408-3343528 1.00e+00 120 chrX:13312318-13312438 9.91e-01 120 chr3R:26859353-26859473 7.70e-01 120 chr3R:30843192-30843312 2.95e-02 120 chr3L:2835121-2835241 5.41e-03 120 chr3L:15762953-15763073 7.02e-01 120 chr2L:20956901-20957021 7.45e-01 120 chrX:9656478-9656598 7.94e-01 120 chr3R:6950289-6950409 1.02e-01 120 chr3L:14611624-14611744 1.00e+00 120 chr2R:19616276-19616396 3.80e-03 49_[+1(8.03e-05)]_63 chr2R:10600452-10600572 1.00e+00 120 chr3R:12443300-12443420 4.14e-01 120 chr2L:16819833-16819953 7.68e-02 120 chr3R:13793448-13793568 1.00e+00 120 chr3L:10675821-10675941 8.17e-05 15_[+1(3.36e-05)]_89_[+4(3.12e-05)] chrX:12663025-12663145 8.71e-01 120 chr2L:8705024-8705144 4.48e-01 120 chr2L:8403779-8403899 2.93e-09 2_[+1(2.70e-07)]_34_[+5(7.41e-05)]_\ 39_[+2(3.87e-06)]_21 chr3R:25633991-25634111 6.74e-01 120 chrX:6984165-6984285 5.36e-01 120 chrX:19160039-19160159 1.23e-03 86_[+4(3.60e-06)]_26 chr3L:2831781-2831901 3.19e-03 88_[+1(1.20e-05)]_24 chr2R:14247577-14247697 7.20e-01 120 chr3L:22840007-22840127 5.82e-04 109_[+2(6.35e-05)]_3 chr2L:11222219-11222339 9.39e-01 120 chr3L:728034-728154 2.71e-01 120 chr3R:8858100-8858220 8.73e-01 120 chr3R:30281535-30281655 7.47e-01 120 chrX:10728206-10728326 7.84e-02 120 chr3L:16176623-16176743 9.45e-01 120 chr3R:8154120-8154240 1.10e-01 120 chr3L:19046506-19046626 6.52e-01 120 chr3L:12616573-12616693 9.17e-01 120 chrX:14750611-14750731 7.85e-01 120 chr2R:7147342-7147462 1.00e+00 120 chr3R:5100491-5100611 5.94e-01 120 chr3L:19650743-19650863 4.81e-04 73_[+5(2.81e-06)]_39 chr2L:18966971-18967091 1.00e+00 120 chr3R:13941502-13941622 5.20e-01 120 chr2R:18304511-18304631 2.27e-01 120 chr3R:23221869-23221989 2.11e-07 6_[+1(9.35e-05)]_12_[+3(6.16e-07)]_\ 64_[+2(1.26e-05)]_14 chr3L:5863080-5863200 8.58e-01 120 chr2L:7973920-7974040 4.40e-01 25_[+5(6.95e-05)]_87 chr2L:10616123-10616243 8.69e-01 120 chr3L:14055344-14055464 9.63e-01 120 chrX:12760779-12760899 3.53e-03 26_[+1(8.03e-05)]_86 chr2L:20463485-20463605 8.75e-01 120 chr3L:21099055-21099175 9.34e-01 120 chr2R:21569763-21569883 8.39e-01 120 chr2L:18628284-18628404 9.81e-01 120 chr2R:18256959-18257079 5.14e-01 120 chr3R:13841069-13841189 4.49e-02 112_[+4(7.29e-05)] chr2R:9674803-9674923 3.27e-01 120 chr3L:1388247-1388367 4.98e-01 120 chr3R:8810945-8811065 4.88e-01 120 chr2L:5249912-5250032 5.56e-03 120 chrX:5897184-5897304 2.94e-01 120 chr3R:23508454-23508574 9.58e-01 120 chrX:5082415-5082535 5.34e-01 120 chrX:13988924-13989044 4.73e-05 8_[+1(1.17e-06)]_104 chr2L:12829350-12829470 9.96e-01 120 chr2R:20136859-20136979 3.33e-02 19_[+5(1.90e-05)]_93 chr2L:6324491-6324611 8.58e-08 14_[+3(6.16e-07)]_5_[+1(8.03e-05)]_\ 28_[+4(9.55e-06)]_28_[+1(8.03e-05)]_13 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************