******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Sox15.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:8107020-8107140 1.0000 120 chr2R:7912202-7912322 1.0000 120 chrX:17493777-17493897 1.0000 120 chr3L:6269108-6269228 1.0000 120 chr3R:24613915-24614035 1.0000 120 chr3L:20953349-20953469 1.0000 120 chr2R:7767444-7767564 1.0000 120 chr3R:27140079-27140199 1.0000 120 chrX:14897744-14897864 1.0000 120 chr2L:7619365-7619485 1.0000 120 chr3L:6471970-6472090 1.0000 120 chr3L:21080613-21080733 1.0000 120 chrX:18256642-18256762 1.0000 120 chr2R:18308323-18308443 1.0000 120 chrX:16647312-16647432 1.0000 120 chr2L:7574331-7574451 1.0000 120 chrX:15530518-15530638 1.0000 120 chr3L:1457359-1457479 1.0000 120 chr2L:6508813-6508933 1.0000 120 chr3L:8822347-8822467 1.0000 120 chr3L:11365912-11366032 1.0000 120 chr3R:27199397-27199517 1.0000 120 chr3R:18157591-18157711 1.0000 120 chr3L:13263987-13264107 1.0000 120 chr3R:28998993-28999113 1.0000 120 chr2L:11399657-11399777 1.0000 120 chr3L:3612736-3612856 1.0000 120 chrX:14134065-14134185 1.0000 120 chr3R:30289111-30289231 1.0000 120 chrX:17678190-17678310 1.0000 120 chr3R:5042526-5042646 1.0000 120 chr3L:12915545-12915665 1.0000 120 chrX:1826222-1826342 1.0000 120 chr3L:766461-766581 1.0000 120 chr3R:30056109-30056229 1.0000 120 chr3L:13406967-13407087 1.0000 120 chr3R:23148521-23148641 1.0000 120 chr3R:29762469-29762589 1.0000 120 chr3L:11382209-11382329 1.0000 120 chrX:22846559-22846679 1.0000 120 chr3L:18240358-18240478 1.0000 120 chr3L:1090563-1090683 1.0000 120 chr2L:11395795-11395915 1.0000 120 chr3R:14002229-14002349 1.0000 120 chr2R:10213691-10213811 1.0000 120 chr2L:14995134-14995254 1.0000 120 chr3R:6102477-6102597 1.0000 120 chrX:6573844-6573964 1.0000 120 chrX:16873195-16873315 1.0000 120 chr2R:12646934-12647054 1.0000 120 chrX:18540287-18540407 1.0000 120 chr3R:14389338-14389458 1.0000 120 chrX:18834514-18834634 1.0000 120 chrX:3060227-3060347 1.0000 120 chr3L:3073602-3073722 1.0000 120 chr3R:20001695-20001815 1.0000 120 chr3L:21738865-21738985 1.0000 120 chr3L:3080817-3080937 1.0000 120 chr3R:17202475-17202595 1.0000 120 chr3L:3074512-3074632 1.0000 120 chrX:10718053-10718173 1.0000 120 chr3L:21099097-21099217 1.0000 120 chr2R:6157421-6157541 1.0000 120 chr3R:22628052-22628172 1.0000 120 chrX:18272528-18272648 1.0000 120 chr3L:1458143-1458263 1.0000 120 chr2L:23174399-23174519 1.0000 120 chr3L:21582264-21582384 1.0000 120 chr2L:14499198-14499318 1.0000 120 chrX:2270053-2270173 1.0000 120 chr3L:20403699-20403819 1.0000 120 chr3R:13526093-13526213 1.0000 120 chr2L:5429261-5429381 1.0000 120 chr3R:21649549-21649669 1.0000 120 chr3R:30843887-30844007 1.0000 120 chr3L:18137346-18137466 1.0000 120 chrX:1466285-1466405 1.0000 120 chr2R:21376434-21376554 1.0000 120 chrX:8255031-8255151 1.0000 120 chr2L:16591496-16591616 1.0000 120 chr3R:20283186-20283306 1.0000 120 chr2L:19162800-19162920 1.0000 120 chr3R:22726645-22726765 1.0000 120 chr3L:16183206-16183326 1.0000 120 chr2R:20136838-20136958 1.0000 120 chrX:15552516-15552636 1.0000 120 chr3R:31688734-31688854 1.0000 120 chr3L:18406033-18406153 1.0000 120 chr3L:12016284-12016404 1.0000 120 chrX:9062778-9062898 1.0000 120 chr3L:3246923-3247043 1.0000 120 chr3L:21042694-21042814 1.0000 120 chr2R:21706684-21706804 1.0000 120 chr2R:18312623-18312743 1.0000 120 chr3R:6229252-6229372 1.0000 120 chr3R:25461843-25461963 1.0000 120 chrX:19843017-19843137 1.0000 120 chrX:17726711-17726831 1.0000 120 chrX:21592188-21592308 1.0000 120 chr2R:8307899-8308019 1.0000 120 chr3R:5331913-5332033 1.0000 120 chr3L:1388280-1388400 1.0000 120 chr3R:14498217-14498337 1.0000 120 chr3L:17577029-17577149 1.0000 120 chr2R:21569805-21569925 1.0000 120 chr3R:18167509-18167629 1.0000 120 chr3R:9913581-9913701 1.0000 120 chrX:12000321-12000441 1.0000 120 chr3L:17007101-17007221 1.0000 120 chr2L:6472516-6472636 1.0000 120 chr3L:1087440-1087560 1.0000 120 chr2L:847448-847568 1.0000 120 chr3R:14691513-14691633 1.0000 120 chr2R:15745251-15745371 1.0000 120 chrX:17113528-17113648 1.0000 120 chr2R:24955758-24955878 1.0000 120 chr2L:11306254-11306374 1.0000 120 chr2R:11183212-11183332 1.0000 120 chrX:2358323-2358443 1.0000 120 chr3L:817856-817976 1.0000 120 chr3R:5103811-5103931 1.0000 120 chr2L:7973995-7974115 1.0000 120 chr2R:17459070-17459190 1.0000 120 chr3R:14308842-14308962 1.0000 120 chr2R:8650603-8650723 1.0000 120 chrX:17518380-17518500 1.0000 120 chr2R:1345305-1345425 1.0000 120 chrX:2648097-2648217 1.0000 120 chr3R:26892900-26893020 1.0000 120 chr3R:23486852-23486972 1.0000 120 chr2L:172051-172171 1.0000 120 chr3L:9419512-9419632 1.0000 120 chr3R:25490389-25490509 1.0000 120 chr2L:11968614-11968734 1.0000 120 chr3L:10709196-10709316 1.0000 120 chr3R:28633903-28634023 1.0000 120 chrX:6059251-6059371 1.0000 120 chr3L:15174269-15174389 1.0000 120 chr2L:18372227-18372347 1.0000 120 chr2L:9447907-9448027 1.0000 120 chr3L:6220325-6220445 1.0000 120 chr3R:31991937-31992057 1.0000 120 chr2L:4348679-4348799 1.0000 120 chrX:8891067-8891187 1.0000 120 chr2L:11066098-11066218 1.0000 120 chr3L:13212950-13213070 1.0000 120 chr3L:761880-762000 1.0000 120 chr2L:16406710-16406830 1.0000 120 chr2L:16503020-16503140 1.0000 120 chr2R:7241702-7241822 1.0000 120 chr3R:13808020-13808140 1.0000 120 chrX:9893005-9893125 1.0000 120 chr3L:15209267-15209387 1.0000 120 chr3R:31505250-31505370 1.0000 120 chr2L:18678373-18678493 1.0000 120 chr2R:14975256-14975376 1.0000 120 chr3R:22195857-22195977 1.0000 120 chr3L:14055310-14055430 1.0000 120 chr2L:18146809-18146929 1.0000 120 chr3L:18198895-18199015 1.0000 120 chrX:10104569-10104689 1.0000 120 chr2L:11222226-11222346 1.0000 120 chr3R:14765471-14765591 1.0000 120 chr2L:3781537-3781657 1.0000 120 chrX:19164858-19164978 1.0000 120 chrX:9047142-9047262 1.0000 120 chr2R:10237824-10237944 1.0000 120 chrX:17571032-17571152 1.0000 120 chr2L:21310455-21310575 1.0000 120 chr3L:11322628-11322748 1.0000 120 chr2L:6022888-6023008 1.0000 120 chr3R:31762850-31762970 1.0000 120 chr3L:16204245-16204365 1.0000 120 chr2L:21847399-21847519 1.0000 120 chr3R:5060418-5060538 1.0000 120 chr2R:22559580-22559700 1.0000 120 chr3L:818470-818590 1.0000 120 chrX:18538380-18538500 1.0000 120 chr3L:3240434-3240554 1.0000 120 chr2R:6556953-6557073 1.0000 120 chrX:9251431-9251551 1.0000 120 chr3L:1374595-1374715 1.0000 120 chr2L:14995334-14995454 1.0000 120 chr3R:4232645-4232765 1.0000 120 chr3L:21099298-21099418 1.0000 120 chr3L:746505-746625 1.0000 120 chr2R:18305347-18305467 1.0000 120 chr3L:11414497-11414617 1.0000 120 chrX:5926870-5926990 1.0000 120 chrX:7491080-7491200 1.0000 120 chrX:5923279-5923399 1.0000 120 chr3R:23147690-23147810 1.0000 120 chr3R:28327234-28327354 1.0000 120 chr2R:22570618-22570738 1.0000 120 chr3L:777425-777545 1.0000 120 chr2R:14967201-14967321 1.0000 120 chrX:6339112-6339232 1.0000 120 chr2L:5483253-5483373 1.0000 120 chrX:19162362-19162482 1.0000 120 chr3R:31505487-31505607 1.0000 120 chr2L:20802316-20802436 1.0000 120 chrX:13278214-13278334 1.0000 120 chr3L:8656815-8656935 1.0000 120 chr3L:12410968-12411088 1.0000 120 chr2L:6165865-6165985 1.0000 120 chr3R:15556702-15556822 1.0000 120 chrX:2365512-2365632 1.0000 120 chr3L:4545883-4546003 1.0000 120 chr2L:13056133-13056253 1.0000 120 chr3R:13793484-13793604 1.0000 120 chr2R:19420542-19420662 1.0000 120 chr3R:30076224-30076344 1.0000 120 chr3R:30284086-30284206 1.0000 120 chr3R:10579689-10579809 1.0000 120 chr2R:20110894-20111014 1.0000 120 chr2R:11176368-11176488 1.0000 120 chr3R:14048928-14049048 1.0000 120 chr2R:20206631-20206751 1.0000 120 chr3R:30501291-30501411 1.0000 120 chrX:17489971-17490091 1.0000 120 chr3L:1348352-1348472 1.0000 120 chr2R:18209785-18209905 1.0000 120 chr2L:15743710-15743830 1.0000 120 chr3R:30151643-30151763 1.0000 120 chr4:663274-663394 1.0000 120 chr3L:17502345-17502465 1.0000 120 chr3R:23508446-23508566 1.0000 120 chrX:5026162-5026282 1.0000 120 chr3L:17608683-17608803 1.0000 120 chrX:14583352-14583472 1.0000 120 chrX:3411950-3412070 1.0000 120 chr3R:31225151-31225271 1.0000 120 chr2R:21569007-21569127 1.0000 120 chr3L:16176595-16176715 1.0000 120 chr2R:24548169-24548289 1.0000 120 chr2L:17431399-17431519 1.0000 120 chr2L:488423-488543 1.0000 120 chr2L:3106030-3106150 1.0000 120 chr3R:17702554-17702674 1.0000 120 chr2L:5290034-5290154 1.0000 120 chr2L:7611741-7611861 1.0000 120 chr3L:13267410-13267530 1.0000 120 chr2L:18645599-18645719 1.0000 120 chr3L:12442687-12442807 1.0000 120 chr2L:14631161-14631281 1.0000 120 chr3L:4836424-4836544 1.0000 120 chr2R:17469462-17469582 1.0000 120 chr2L:18648351-18648471 1.0000 120 chrX:22479445-22479565 1.0000 120 chr3L:11297735-11297855 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Sox15/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Sox15.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.343 C 0.158 G 0.161 T 0.339 Background letter frequencies (from file dataset with add-one prior applied): A 0.342 C 0.158 G 0.161 T 0.339 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCTTGGCC MEME-1 width = 8 sites = 11 llr = 118 E-value = 4.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTTGGCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::2:::: pos.-specific C :a::1398 probability G a::1971: matrix T ::a7:::2 bits 2.7 ** 2.4 ** 2.1 ** * * 1.9 ** **** Relative 1.6 *** **** Entropy 1.3 *** **** (15.4 bits) 1.1 *** **** 0.8 *** **** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCTTGGCC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTGGCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21706684-21706804 102 1.89e-06 GACATATTTC GCTTGGCC CATTGGTCCC chr3R:29762469-29762589 77 1.89e-06 AATGGGCTGA GCTTGGCC AATCCTATAG chr3L:16176595-16176715 82 3.75e-06 AATTTTTTAA GCTTGCCC ACATTTAAGT chrX:13278214-13278334 90 3.75e-06 AGCCCATAGA GCTTGCCC TACCAAAGAA chr3R:25490389-25490509 67 6.55e-06 GAATTATCAA GCTAGGCC GTTCGCTATG chr2R:7767444-7767564 89 6.55e-06 CTTATCTATC GCTAGGCC TGCAAATATG chr3R:30284086-30284206 74 1.53e-05 GAGTATTATA GCTTGGCT GATGTTGAAT chr3L:3240434-3240554 97 1.53e-05 ACTTTATCTA GCTTGGCT TGCTAGAAAT chrX:2648097-2648217 112 1.53e-05 GTTTGTGGTG GCTTGGGC C chr3L:3080817-3080937 36 1.53e-05 GTGGTGATTA GCTGGCCC AAACTACAAT chrX:17678190-17678310 92 1.53e-05 AGAAGGGATC GCTTCGCC ATGGACAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTGGCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21706684-21706804 1.9e-06 101_[+1]_11 chr3R:29762469-29762589 1.9e-06 76_[+1]_36 chr3L:16176595-16176715 3.7e-06 81_[+1]_31 chrX:13278214-13278334 3.7e-06 89_[+1]_23 chr3R:25490389-25490509 6.6e-06 66_[+1]_46 chr2R:7767444-7767564 6.6e-06 88_[+1]_24 chr3R:30284086-30284206 1.5e-05 73_[+1]_39 chr3L:3240434-3240554 1.5e-05 96_[+1]_16 chrX:2648097-2648217 1.5e-05 111_[+1]_1 chr3L:3080817-3080937 1.5e-05 35_[+1]_77 chrX:17678190-17678310 1.5e-05 91_[+1]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTGGCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTTGGCC width=8 seqs=11 chr2R:21706684-21706804 ( 102) GCTTGGCC 1 chr3R:29762469-29762589 ( 77) GCTTGGCC 1 chr3L:16176595-16176715 ( 82) GCTTGCCC 1 chrX:13278214-13278334 ( 90) GCTTGCCC 1 chr3R:25490389-25490509 ( 67) GCTAGGCC 1 chr2R:7767444-7767564 ( 89) GCTAGGCC 1 chr3R:30284086-30284206 ( 74) GCTTGGCT 1 chr3L:3240434-3240554 ( 97) GCTTGGCT 1 chrX:2648097-2648217 ( 112) GCTTGGGC 1 chr3L:3080817-3080937 ( 36) GCTGGCCC 1 chrX:17678190-17678310 ( 92) GCTTCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTGGCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6812 E= 4.5e+001 -1010 -1010 263 -1010 -1010 266 -1010 -1010 -1010 -1010 -1010 156 -91 -1010 -83 110 -1010 -79 249 -1010 -1010 79 217 -1010 -1010 253 -83 -1010 -1010 237 -1010 -90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTGGCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 4.5e+001 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.181818 0.000000 0.090909 0.727273 0.000000 0.090909 0.909091 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.818182 0.000000 0.181818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTGGCC MEME-1 regular expression -------------------------------------------------------------------------------- GCTTG[GC]CC -------------------------------------------------------------------------------- Time 7.50 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCCCCCC MEME-2 width = 8 sites = 2 llr = 28 E-value = 2.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCCCCCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:aaaaaa probability G :::::::: matrix T :a:::::: bits 2.7 * ****** 2.4 * ****** 2.1 * ****** 1.9 * ****** Relative 1.6 ******** Entropy 1.3 ******** (20.2 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTCCCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:818470-818590 20 8.33e-07 TATATAAATT CTCCCCCC TTTATAAAAT chr3R:8107020-8107140 106 8.33e-07 CTTCACACCA CTCCCCCC GTTTCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:818470-818590 8.3e-07 19_[+2]_93 chr3R:8107020-8107140 8.3e-07 105_[+2]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCCCCCC width=8 seqs=2 chr3L:818470-818590 ( 20) CTCCCCCC 1 chr3R:8107020-8107140 ( 106) CTCCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.7e+003 -765 266 -765 -765 -765 -765 -765 156 -765 266 -765 -765 -765 266 -765 -765 -765 266 -765 -765 -765 266 -765 -765 -765 266 -765 -765 -765 266 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.7e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCCC MEME-2 regular expression -------------------------------------------------------------------------------- CTCCCCCC -------------------------------------------------------------------------------- Time 13.78 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCARCC MEME-3 width = 8 sites = 5 llr = 59 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCARCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :2::a4:: pos.-specific C a82a::aa probability G ::8::6:: matrix T :::::::: bits 2.7 * * ** 2.4 * * ** 2.1 * * ** 1.9 * ** ** Relative 1.6 ***** ** Entropy 1.3 ******** (17.1 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCGCAGCC consensus AC A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCARCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14308842-14308962 23 8.73e-07 TCGAAGGCCA CCGCAGCC GTTGCTCGGT chrX:3411950-3412070 70 2.73e-06 AAACTAGATT CCGCAACC AATTAAGTAG chrX:17518380-17518500 110 2.73e-06 TAGCTTATTT CCGCAACC TGC chr3L:766461-766581 53 3.58e-06 CTAACCCCCA CCCCAGCC ACTTGTAAAT chr3R:23147690-23147810 106 5.47e-06 TTTTTGTGCT CAGCAGCC TTCGTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCARCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14308842-14308962 8.7e-07 22_[+3]_90 chrX:3411950-3412070 2.7e-06 69_[+3]_43 chrX:17518380-17518500 2.7e-06 109_[+3]_3 chr3L:766461-766581 3.6e-06 52_[+3]_60 chr3R:23147690-23147810 5.5e-06 105_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCARCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCARCC width=8 seqs=5 chr3R:14308842-14308962 ( 23) CCGCAGCC 1 chrX:3411950-3412070 ( 70) CCGCAACC 1 chrX:17518380-17518500 ( 110) CCGCAACC 1 chr3L:766461-766581 ( 53) CCCCAGCC 1 chr3R:23147690-23147810 ( 106) CAGCAGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCARCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 1.1e+004 -897 266 -897 -897 -77 234 -897 -897 -897 34 231 -897 -897 266 -897 -897 154 -897 -897 -897 22 -897 189 -897 -897 266 -897 -897 -897 266 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCARCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.1e+004 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCARCC MEME-3 regular expression -------------------------------------------------------------------------------- C[CA][GC]CA[GA]CC -------------------------------------------------------------------------------- Time 20.20 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGTGSRS MEME-4 width = 8 sites = 17 llr = 163 E-value = 3.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGTGSRS MEME-4 Description -------------------------------------------------------------------------------- Simplified A 3a::::4: pos.-specific C 7:2::6:5 probability G ::8:a465 matrix T :::a:::: bits 2.7 * 2.4 * 2.1 * 1.9 * * Relative 1.6 ***** * Entropy 1.3 ******** (13.8 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGTGCGG consensus A GAC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGSRS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:16503020-16503140 1 1.94e-06 . CAGTGCGG GTCACAATGC chrX:10104569-10104689 47 3.85e-06 GTACTCAGTA CAGTGCGC GACATAAGTT chr2L:14499198-14499318 67 3.85e-06 GTATATATTC CAGTGCGC CTCAACATTT chr2L:3106030-3106150 100 1.19e-05 ATATTTTTAT CAGTGCAG AGACAAAAGC chr2R:20206631-20206751 5 1.19e-05 AGGT CAGTGCAG AGCACTGAAA chr2L:4348679-4348799 90 1.19e-05 AAACTAAAAT CAGTGCAG CTAGTTTATA chr2R:20110894-20111014 57 1.60e-05 CGATTTAATA CAGTGCAC TTACAAATGA chr3R:4232645-4232765 23 2.40e-05 GTTACGTATT CACTGCGC TCTGACCACT chrX:22479445-22479565 55 2.81e-05 TCAGTTTAAC AAGTGCGC AAACAAGTTA chr3L:13212950-13213070 46 2.81e-05 AGAAGAGGTC AAGTGCGC GGGTAAATGT chrX:2648097-2648217 37 3.23e-05 TCTCCCAGCG CAGTGGAG CCAAAGTCCT chr2R:24548169-24548289 19 3.64e-05 CACCTCAAGT CAGTGGAC TCTTTTGGCT chrX:6059251-6059371 11 3.84e-05 ACCAATTCTA CACTGGGG GAAAAAAAAA chr3L:11382209-11382329 10 3.84e-05 GGATGGGTG CACTGGGG GAAAAATTTA chrX:7491080-7491200 62 4.46e-05 AAGCTGCCAA AAGTGGGG TATTAAATGA chr3R:5060418-5060538 26 4.46e-05 TCGAAGCACT AAGTGGGG AAACCTGTTT chr3R:20001695-20001815 75 4.88e-05 catggccaaa aagtgggc aaacgattcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGSRS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:16503020-16503140 1.9e-06 [+4]_112 chrX:10104569-10104689 3.9e-06 46_[+4]_66 chr2L:14499198-14499318 3.9e-06 66_[+4]_46 chr2L:3106030-3106150 1.2e-05 99_[+4]_13 chr2R:20206631-20206751 1.2e-05 4_[+4]_108 chr2L:4348679-4348799 1.2e-05 89_[+4]_23 chr2R:20110894-20111014 1.6e-05 56_[+4]_56 chr3R:4232645-4232765 2.4e-05 22_[+4]_90 chrX:22479445-22479565 2.8e-05 54_[+4]_58 chr3L:13212950-13213070 2.8e-05 45_[+4]_67 chrX:2648097-2648217 3.2e-05 36_[+4]_76 chr2R:24548169-24548289 3.6e-05 18_[+4]_94 chrX:6059251-6059371 3.8e-05 10_[+4]_102 chr3L:11382209-11382329 3.8e-05 9_[+4]_103 chrX:7491080-7491200 4.5e-05 61_[+4]_51 chr3R:5060418-5060538 4.5e-05 25_[+4]_87 chr3R:20001695-20001815 4.9e-05 74_[+4]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGSRS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGTGSRS width=8 seqs=17 chr2L:16503020-16503140 ( 1) CAGTGCGG 1 chrX:10104569-10104689 ( 47) CAGTGCGC 1 chr2L:14499198-14499318 ( 67) CAGTGCGC 1 chr2L:3106030-3106150 ( 100) CAGTGCAG 1 chr2R:20206631-20206751 ( 5) CAGTGCAG 1 chr2L:4348679-4348799 ( 90) CAGTGCAG 1 chr2R:20110894-20111014 ( 57) CAGTGCAC 1 chr3R:4232645-4232765 ( 23) CACTGCGC 1 chrX:22479445-22479565 ( 55) AAGTGCGC 1 chr3L:13212950-13213070 ( 46) AAGTGCGC 1 chrX:2648097-2648217 ( 37) CAGTGGAG 1 chr2R:24548169-24548289 ( 19) CAGTGGAC 1 chrX:6059251-6059371 ( 11) CACTGGGG 1 chr3L:11382209-11382329 ( 10) CACTGGGG 1 chrX:7491080-7491200 ( 62) AAGTGGGG 1 chr3R:5060418-5060538 ( 26) AAGTGGGG 1 chr3R:20001695-20001815 ( 75) AAGTGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGSRS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7672 E= 3.4e+004 -22 216 -1073 -1073 155 -1073 -1073 -1073 -1073 16 235 -1073 -1073 -1073 -1073 156 -1073 -1073 263 -1073 -1073 190 135 -1073 4 -1073 200 -1073 -1073 158 172 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGSRS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 3.4e+004 0.294118 0.705882 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.176471 0.823529 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.588235 0.411765 0.000000 0.352941 0.000000 0.647059 0.000000 0.000000 0.470588 0.529412 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGSRS MEME-4 regular expression -------------------------------------------------------------------------------- [CA]AGTG[CG][GA][GC] -------------------------------------------------------------------------------- Time 26.57 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCSGCC MEME-5 width = 8 sites = 2 llr = 27 E-value = 1.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCSGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::a5:aa probability G ::a:5a:: matrix T :a:::::: bits 2.7 * ** *** 2.4 * ** *** 2.1 * ** *** 1.9 * ** *** Relative 1.6 ******** Entropy 1.3 ******** (19.1 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTGCCGCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCSGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14967201-14967321 18 1.75e-06 TGGGAATGGG CTGCCGCC ATTAGACCAT chrX:9251431-9251551 3 1.75e-06 AG CTGCGGCC ACAATAATAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCSGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14967201-14967321 1.7e-06 17_[+5]_95 chrX:9251431-9251551 1.7e-06 2_[+5]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCSGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCSGCC width=8 seqs=2 chr2R:14967201-14967321 ( 18) CTGCCGCC 1 chrX:9251431-9251551 ( 3) CTGCGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCSGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.8e+004 -765 266 -765 -765 -765 -765 -765 156 -765 -765 263 -765 -765 266 -765 -765 -765 166 163 -765 -765 -765 263 -765 -765 266 -765 -765 -765 266 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCSGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.8e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCSGCC MEME-5 regular expression -------------------------------------------------------------------------------- CTGC[CG]GCC -------------------------------------------------------------------------------- Time 32.86 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:8107020-8107140 1.72e-03 105_[+2(8.33e-07)]_7 chr2R:7912202-7912322 8.02e-01 120 chrX:17493777-17493897 8.34e-01 120 chr3L:6269108-6269228 8.22e-01 120 chr3R:24613915-24614035 2.57e-01 120 chr3L:20953349-20953469 8.02e-01 120 chr2R:7767444-7767564 8.89e-02 88_[+1(6.55e-06)]_24 chr3R:27140079-27140199 7.04e-01 120 chrX:14897744-14897864 4.85e-02 76_[+3(6.81e-05)]_36 chr2L:7619365-7619485 1.96e-01 105_[+1(7.25e-05)]_7 chr3L:6471970-6472090 7.65e-01 120 chr3L:21080613-21080733 2.70e-01 120 chrX:18256642-18256762 2.61e-02 120 chr2R:18308323-18308443 9.59e-01 120 chrX:16647312-16647432 1.10e-01 120 chr2L:7574331-7574451 9.24e-01 120 chrX:15530518-15530638 9.70e-01 120 chr3L:1457359-1457479 6.06e-01 120 chr2L:6508813-6508933 9.83e-01 120 chr3L:8822347-8822467 7.85e-01 120 chr3L:11365912-11366032 9.01e-01 120 chr3R:27199397-27199517 2.42e-01 120 chr3R:18157591-18157711 9.16e-02 120 chr3L:13263987-13264107 7.60e-01 120 chr3R:28998993-28999113 1.72e-01 120 chr2L:11399657-11399777 9.28e-01 120 chr3L:3612736-3612856 5.73e-01 120 chrX:14134065-14134185 9.51e-01 120 chr3R:30289111-30289231 9.91e-01 120 chrX:17678190-17678310 1.74e-02 91_[+1(1.53e-05)]_21 chr3R:5042526-5042646 5.41e-01 120 chr3L:12915545-12915665 1.00e+00 120 chrX:1826222-1826342 8.77e-01 120 chr3L:766461-766581 2.80e-04 52_[+3(3.58e-06)]_60 chr3R:30056109-30056229 9.46e-02 75_[+5(6.43e-05)]_37 chr3L:13406967-13407087 8.11e-01 120 chr3R:23148521-23148641 5.85e-04 18_[+2(3.35e-05)]_3_[+1(9.13e-05)]_\ 83 chr3R:29762469-29762589 6.58e-03 76_[+1(1.89e-06)]_36 chr3L:11382209-11382329 1.91e-01 9_[+4(3.84e-05)]_103 chrX:22846559-22846679 4.18e-01 120 chr3L:18240358-18240478 7.57e-01 120 chr3L:1090563-1090683 2.15e-02 120 chr2L:11395795-11395915 3.37e-01 120 chr3R:14002229-14002349 9.94e-01 120 chr2R:10213691-10213811 6.69e-01 120 chr2L:14995134-14995254 9.71e-01 120 chr3R:6102477-6102597 9.96e-01 120 chrX:6573844-6573964 9.57e-01 120 chrX:16873195-16873315 1.00e+00 120 chr2R:12646934-12647054 9.50e-01 120 chrX:18540287-18540407 1.55e-03 120 chr3R:14389338-14389458 6.89e-01 120 chrX:18834514-18834634 3.37e-01 120 chrX:3060227-3060347 7.60e-02 120 chr3L:3073602-3073722 4.33e-01 120 chr3R:20001695-20001815 8.68e-02 74_[+4(4.88e-05)]_38 chr3L:21738865-21738985 9.79e-01 120 chr3L:3080817-3080937 6.99e-03 35_[+1(1.53e-05)]_77 chr3R:17202475-17202595 9.78e-01 120 chr3L:3074512-3074632 9.84e-01 120 chrX:10718053-10718173 6.74e-01 120 chr3L:21099097-21099217 9.47e-01 120 chr2R:6157421-6157541 7.86e-01 120 chr3R:22628052-22628172 9.33e-01 120 chrX:18272528-18272648 8.45e-01 120 chr3L:1458143-1458263 4.21e-01 120 chr2L:23174399-23174519 3.78e-01 120 chr3L:21582264-21582384 9.17e-03 120 chr2L:14499198-14499318 2.01e-02 66_[+4(3.85e-06)]_46 chrX:2270053-2270173 1.06e-01 [+2(3.35e-05)]_112 chr3L:20403699-20403819 1.74e-01 120 chr3R:13526093-13526213 1.83e-04 14_[+2(9.42e-05)]_98 chr2L:5429261-5429381 9.29e-01 120 chr3R:21649549-21649669 2.34e-01 120 chr3R:30843887-30844007 3.12e-01 120 chr3L:18137346-18137466 1.65e-01 120 chrX:1466285-1466405 6.49e-01 120 chr2R:21376434-21376554 7.38e-01 120 chrX:8255031-8255151 3.93e-01 120 chr2L:16591496-16591616 5.92e-02 120 chr3R:20283186-20283306 5.45e-01 120 chr2L:19162800-19162920 5.27e-01 120 chr3R:22726645-22726765 7.39e-01 120 chr3L:16183206-16183326 1.00e+00 120 chr2R:20136838-20136958 9.72e-03 85_[+4(6.58e-05)]_27 chrX:15552516-15552636 7.47e-01 120 chr3R:31688734-31688854 9.87e-01 120 chr3L:18406033-18406153 7.34e-01 120 chr3L:12016284-12016404 5.46e-01 120 chrX:9062778-9062898 6.21e-01 120 chr3L:3246923-3247043 1.00e+00 120 chr3L:21042694-21042814 4.53e-01 120 chr2R:21706684-21706804 1.12e-02 101_[+1(1.89e-06)]_11 chr2R:18312623-18312743 9.91e-01 120 chr3R:6229252-6229372 9.62e-01 120 chr3R:25461843-25461963 4.56e-01 120 chrX:19843017-19843137 9.59e-01 120 chrX:17726711-17726831 1.46e-01 120 chrX:21592188-21592308 1.28e-01 120 chr2R:8307899-8308019 4.47e-01 120 chr3R:5331913-5332033 5.85e-01 120 chr3L:1388280-1388400 3.19e-02 120 chr3R:14498217-14498337 1.46e-01 120 chr3L:17577029-17577149 5.78e-01 120 chr2R:21569805-21569925 9.62e-01 120 chr3R:18167509-18167629 7.93e-01 120 chr3R:9913581-9913701 8.04e-01 120 chrX:12000321-12000441 6.18e-01 120 chr3L:17007101-17007221 5.52e-01 120 chr2L:6472516-6472636 5.97e-01 120 chr3L:1087440-1087560 9.49e-01 120 chr2L:847448-847568 8.08e-01 120 chr3R:14691513-14691633 4.08e-01 120 chr2R:15745251-15745371 1.00e+00 120 chrX:17113528-17113648 3.47e-01 120 chr2R:24955758-24955878 7.77e-02 120 chr2L:11306254-11306374 2.19e-01 120 chr2R:11183212-11183332 9.82e-01 120 chrX:2358323-2358443 3.31e-01 120 chr3L:817856-817976 8.27e-01 120 chr3R:5103811-5103931 5.43e-01 120 chr2L:7973995-7974115 9.17e-01 120 chr2R:17459070-17459190 6.46e-01 120 chr3R:14308842-14308962 8.74e-05 22_[+3(8.73e-07)]_90 chr2R:8650603-8650723 9.88e-01 120 chrX:17518380-17518500 2.68e-03 109_[+3(2.73e-06)]_3 chr2R:1345305-1345425 7.11e-02 120 chrX:2648097-2648217 5.75e-05 36_[+4(3.23e-05)]_67_[+1(1.53e-05)]_\ 1 chr3R:26892900-26893020 9.71e-01 120 chr3R:23486852-23486972 7.11e-01 120 chr2L:172051-172171 6.51e-01 120 chr3L:9419512-9419632 5.12e-01 120 chr3R:25490389-25490509 5.80e-03 66_[+1(6.55e-06)]_46 chr2L:11968614-11968734 8.78e-01 120 chr3L:10709196-10709316 1.00e+00 120 chr3R:28633903-28634023 1.00e+00 120 chrX:6059251-6059371 1.93e-01 10_[+4(3.84e-05)]_102 chr3L:15174269-15174389 2.97e-01 120 chr2L:18372227-18372347 4.56e-04 39_[+4(6.58e-05)]_28_[+5(6.43e-05)]_\ 37 chr2L:9447907-9448027 8.60e-01 120 chr3L:6220325-6220445 5.58e-02 120 chr3R:31991937-31992057 9.42e-01 120 chr2L:4348679-4348799 4.86e-03 89_[+4(1.19e-05)]_23 chrX:8891067-8891187 3.01e-01 120 chr2L:11066098-11066218 9.73e-01 120 chr3L:13212950-13213070 2.05e-01 45_[+4(2.81e-05)]_67 chr3L:761880-762000 1.93e-01 120 chr2L:16406710-16406830 5.81e-01 120 chr2L:16503020-16503140 1.54e-02 [+4(1.94e-06)]_112 chr2R:7241702-7241822 9.05e-01 120 chr3R:13808020-13808140 7.13e-01 120 chrX:9893005-9893125 4.25e-01 120 chr3L:15209267-15209387 8.95e-01 120 chr3R:31505250-31505370 2.98e-02 120 chr2L:18678373-18678493 1.73e-01 11_[+1(5.79e-05)]_101 chr2R:14975256-14975376 1.87e-01 120 chr3R:22195857-22195977 1.59e-01 120 chr3L:14055310-14055430 8.26e-01 120 chr2L:18146809-18146929 5.46e-01 120 chr3L:18198895-18199015 9.71e-01 120 chrX:10104569-10104689 1.49e-02 46_[+4(3.85e-06)]_66 chr2L:11222226-11222346 9.43e-01 120 chr3R:14765471-14765591 8.26e-01 120 chr2L:3781537-3781657 9.86e-01 120 chrX:19164858-19164978 8.48e-01 120 chrX:9047142-9047262 2.78e-01 120 chr2R:10237824-10237944 6.87e-01 120 chrX:17571032-17571152 7.94e-01 120 chr2L:21310455-21310575 2.13e-01 120 chr3L:11322628-11322748 9.80e-01 120 chr2L:6022888-6023008 3.53e-01 120 chr3R:31762850-31762970 9.95e-01 120 chr3L:16204245-16204365 4.17e-01 120 chr2L:21847399-21847519 7.54e-02 33_[+5(6.43e-05)]_79 chr3R:5060418-5060538 2.17e-01 25_[+4(4.46e-05)]_87 chr2R:22559580-22559700 1.00e+00 120 chr3L:818470-818590 2.16e-03 19_[+2(8.33e-07)]_93 chrX:18538380-18538500 8.61e-01 120 chr3L:3240434-3240554 1.18e-01 96_[+1(1.53e-05)]_16 chr2R:6556953-6557073 2.93e-01 120 chrX:9251431-9251551 3.15e-05 2_[+5(1.75e-06)]_110 chr3L:1374595-1374715 9.57e-01 120 chr2L:14995334-14995454 9.90e-01 120 chr3R:4232645-4232765 1.59e-02 22_[+4(2.40e-05)]_90 chr3L:21099298-21099418 9.93e-01 120 chr3L:746505-746625 2.66e-01 120 chr2R:18305347-18305467 1.00e+00 120 chr3L:11414497-11414617 3.62e-02 120 chrX:5926870-5926990 2.94e-02 67_[+1(6.77e-05)]_45 chrX:7491080-7491200 1.45e-02 61_[+4(4.46e-05)]_51 chrX:5923279-5923399 9.90e-01 120 chr3R:23147690-23147810 1.03e-03 105_[+3(5.47e-06)]_7 chr3R:28327234-28327354 3.83e-01 4_[+4(7.45e-05)]_108 chr2R:22570618-22570738 1.32e-02 120 chr3L:777425-777545 8.83e-01 120 chr2R:14967201-14967321 2.27e-05 17_[+5(1.75e-06)]_95 chrX:6339112-6339232 2.47e-03 15_[+1(6.77e-05)]_97 chr2L:5483253-5483373 3.45e-01 120 chrX:19162362-19162482 7.69e-01 120 chr3R:31505487-31505607 1.41e-01 120 chr2L:20802316-20802436 4.32e-02 120 chrX:13278214-13278334 6.56e-03 89_[+1(3.75e-06)]_23 chr3L:8656815-8656935 9.50e-01 120 chr3L:12410968-12411088 8.61e-01 120 chr2L:6165865-6165985 9.52e-01 120 chr3R:15556702-15556822 5.44e-01 120 chrX:2365512-2365632 7.04e-01 120 chr3L:4545883-4546003 1.97e-01 120 chr2L:13056133-13056253 2.29e-01 120 chr3R:13793484-13793604 7.28e-01 120 chr2R:19420542-19420662 5.57e-01 120 chr3R:30076224-30076344 2.11e-01 120 chr3R:30284086-30284206 8.49e-02 73_[+1(1.53e-05)]_39 chr3R:10579689-10579809 1.41e-01 120 chr2R:20110894-20111014 5.92e-02 56_[+4(1.60e-05)]_56 chr2R:11176368-11176488 1.00e+00 120 chr3R:14048928-14049048 2.37e-01 120 chr2R:20206631-20206751 7.37e-02 4_[+4(1.19e-05)]_108 chr3R:30501291-30501411 5.34e-01 120 chrX:17489971-17490091 6.80e-01 120 chr3L:1348352-1348472 2.98e-01 120 chr2R:18209785-18209905 9.45e-01 120 chr2L:15743710-15743830 6.67e-01 120 chr3R:30151643-30151763 4.39e-01 120 chr4:663274-663394 1.31e-01 120 chr3L:17502345-17502465 9.96e-01 120 chr3R:23508446-23508566 9.30e-01 120 chrX:5026162-5026282 9.58e-01 120 chr3L:17608683-17608803 3.24e-01 120 chrX:14583352-14583472 1.50e-01 120 chrX:3411950-3412070 5.48e-03 69_[+3(2.73e-06)]_43 chr3R:31225151-31225271 5.77e-01 120 chr2R:21569007-21569127 9.89e-01 120 chr3L:16176595-16176715 2.19e-02 81_[+1(3.75e-06)]_31 chr2R:24548169-24548289 7.62e-02 18_[+4(3.64e-05)]_94 chr2L:17431399-17431519 9.97e-01 120 chr2L:488423-488543 3.76e-02 120 chr2L:3106030-3106150 1.16e-03 99_[+4(1.19e-05)]_13 chr3R:17702554-17702674 8.65e-01 120 chr2L:5290034-5290154 1.00e+00 120 chr2L:7611741-7611861 6.20e-02 120 chr3L:13267410-13267530 7.18e-01 120 chr2L:18645599-18645719 4.53e-01 120 chr3L:12442687-12442807 8.55e-01 120 chr2L:14631161-14631281 2.58e-01 120 chr3L:4836424-4836544 9.97e-01 120 chr2R:17469462-17469582 1.65e-01 120 chr2L:18648351-18648471 1.20e-02 120 chrX:22479445-22479565 3.34e-02 54_[+4(2.81e-05)]_58 chr3L:11297735-11297855 9.38e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************