******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Sox14.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:10209737-10209857 1.0000 120 chr2R:11650993-11651113 1.0000 120 chr2R:12917350-12917470 1.0000 120 chr2R:17581474-17581594 1.0000 120 chr2L:20069340-20069460 1.0000 120 chr2L:9493995-9494115 1.0000 120 chr2L:18689607-18689727 1.0000 120 chr3L:3122757-3122877 1.0000 120 chr2R:13589286-13589406 1.0000 120 chr3R:24046619-24046739 1.0000 120 chr2R:14543542-14543662 1.0000 120 chr3L:3376682-3376802 1.0000 120 chr2R:23718191-23718311 1.0000 120 chr3R:23729900-23730020 1.0000 120 chr2R:9839505-9839625 1.0000 120 chr3L:8968458-8968578 1.0000 120 chr3L:883949-884069 1.0000 120 chr3L:17530587-17530707 1.0000 120 chr2L:1989645-1989765 1.0000 120 chr2L:5295162-5295282 1.0000 120 chr3R:11679680-11679800 1.0000 120 chrX:21358521-21358641 1.0000 120 chrX:10734886-10735006 1.0000 120 chr3R:24016087-24016207 1.0000 120 chr3L:9358888-9359008 1.0000 120 chrX:11819523-11819643 1.0000 120 chr2R:8143300-8143420 1.0000 120 chr3R:29993303-29993423 1.0000 120 chr3L:9671503-9671623 1.0000 120 chr3L:11124124-11124244 1.0000 120 chr3R:28811995-28812115 1.0000 120 chr3L:9678374-9678494 1.0000 120 chr3L:19092831-19092951 1.0000 120 chr3R:16290509-16290629 1.0000 120 chr2R:7962575-7962695 1.0000 120 chrX:6803865-6803985 1.0000 120 chr2R:14221050-14221170 1.0000 120 chr3R:5622244-5622364 1.0000 120 chr2L:128479-128599 1.0000 120 chr3L:16639161-16639281 1.0000 120 chr3R:24360124-24360244 1.0000 120 chrX:15569119-15569239 1.0000 120 chrX:1827688-1827808 1.0000 120 chr3L:20349345-20349465 1.0000 120 chr2R:11648527-11648647 1.0000 120 chr3L:20517531-20517651 1.0000 120 chr2L:5294548-5294668 1.0000 120 chr2R:24294671-24294791 1.0000 120 chr3L:20430366-20430486 1.0000 120 chr3L:2632693-2632813 1.0000 120 chr3L:1000831-1000951 1.0000 120 chr2L:156028-156148 1.0000 120 chr2R:22103103-22103223 1.0000 120 chr3L:21343659-21343779 1.0000 120 chr3L:9410188-9410308 1.0000 120 chr2R:9284285-9284405 1.0000 120 chrX:10741819-10741939 1.0000 120 chrX:11149874-11149994 1.0000 120 chr2L:2364271-2364391 1.0000 120 chr3R:31611364-31611484 1.0000 120 chr3L:3901941-3902061 1.0000 120 chr3R:30772919-30773039 1.0000 120 chr3R:16227325-16227445 1.0000 120 chr2R:7150417-7150537 1.0000 120 chr2L:22134163-22134283 1.0000 120 chr3L:20518630-20518750 1.0000 120 chr2L:1901398-1901518 1.0000 120 chrX:476517-476637 1.0000 120 chr3R:11615859-11615979 1.0000 120 chrX:13830224-13830344 1.0000 120 chr2L:7701481-7701601 1.0000 120 chr3L:146306-146426 1.0000 120 chrX:18777103-18777223 1.0000 120 chr2L:10220612-10220732 1.0000 120 chr2R:24875760-24875880 1.0000 120 chr2L:7418471-7418591 1.0000 120 chr3R:13011129-13011249 1.0000 120 chr2R:18806093-18806213 1.0000 120 chrX:16800055-16800175 1.0000 120 chr3R:5618345-5618465 1.0000 120 chrX:21368554-21368674 1.0000 120 chr2L:7199895-7200015 1.0000 120 chrX:7969473-7969593 1.0000 120 chr2L:107795-107915 1.0000 120 chr2R:6102689-6102809 1.0000 120 chr3R:8561641-8561761 1.0000 120 chr2R:15613878-15613998 1.0000 120 chr2R:24986590-24986710 1.0000 120 chr2L:8424183-8424303 1.0000 120 chr3L:17973233-17973353 1.0000 120 chrX:18499873-18499993 1.0000 120 chr3L:7368373-7368493 1.0000 120 chr2R:23843266-23843386 1.0000 120 chr3R:23386272-23386392 1.0000 120 chr2R:24783528-24783648 1.0000 120 chr3L:21497452-21497572 1.0000 120 chr3L:8304123-8304243 1.0000 120 chr3R:13767412-13767532 1.0000 120 chr2R:7694384-7694504 1.0000 120 chr3R:28696134-28696254 1.0000 120 chr3L:1496568-1496688 1.0000 120 chr2L:2038407-2038527 1.0000 120 chr3L:5779860-5779980 1.0000 120 chr2L:8093298-8093418 1.0000 120 chrX:1466242-1466362 1.0000 120 chr3R:8040994-8041114 1.0000 120 chr3L:2568415-2568535 1.0000 120 chr3R:23993237-23993357 1.0000 120 chr2R:11704600-11704720 1.0000 120 chr2R:24807851-24807971 1.0000 120 chrX:9251282-9251402 1.0000 120 chr3L:3037062-3037182 1.0000 120 chr2R:10429946-10430066 1.0000 120 chr3L:12258777-12258897 1.0000 120 chr3L:12040436-12040556 1.0000 120 chr4:1230673-1230793 1.0000 120 chr2R:12981069-12981189 1.0000 120 chr3R:10886451-10886571 1.0000 120 chr2R:11641962-11642082 1.0000 120 chr2L:4028156-4028276 1.0000 120 chr2R:10772035-10772155 1.0000 120 chr3L:17557204-17557324 1.0000 120 chrX:19193497-19193617 1.0000 120 chr2L:4648933-4649053 1.0000 120 chr2R:16386857-16386977 1.0000 120 chr3R:23993508-23993628 1.0000 120 chr3R:25881930-25882050 1.0000 120 chrX:6745666-6745786 1.0000 120 chr3L:16927470-16927590 1.0000 120 chr3R:4810084-4810204 1.0000 120 chr3R:4914454-4914574 1.0000 120 chr2L:11399609-11399729 1.0000 120 chr3L:19833437-19833557 1.0000 120 chr3L:16377961-16378081 1.0000 120 chr3L:15594402-15594522 1.0000 120 chrX:17518406-17518526 1.0000 120 chr2R:17048801-17048921 1.0000 120 chr2R:9284487-9284607 1.0000 120 chr3L:22466500-22466620 1.0000 120 chr3L:16038060-16038180 1.0000 120 chr3R:22636519-22636639 1.0000 120 chr2R:16027972-16028092 1.0000 120 chr2R:8024472-8024592 1.0000 120 chr3R:27925183-27925303 1.0000 120 chrX:7967687-7967807 1.0000 120 chr2L:2873523-2873643 1.0000 120 chrX:10209938-10210058 1.0000 120 chr2L:14624019-14624139 1.0000 120 chr3R:21224467-21224587 1.0000 120 chr3R:4337771-4337891 1.0000 120 chr3R:31608731-31608851 1.0000 120 chr3R:14024323-14024443 1.0000 120 chr2R:12535213-12535333 1.0000 120 chr2R:10430145-10430265 1.0000 120 chr3R:25461795-25461915 1.0000 120 chr3R:27140122-27140242 1.0000 120 chr3R:18481157-18481277 1.0000 120 chr2R:19669007-19669127 1.0000 120 chr2R:7727503-7727623 1.0000 120 chr3L:7328556-7328676 1.0000 120 chr2R:18271189-18271309 1.0000 120 chr2L:10276991-10277111 1.0000 120 chrX:2270091-2270211 1.0000 120 chr3L:18672396-18672516 1.0000 120 chr3R:25097586-25097706 1.0000 120 chr3R:26540578-26540698 1.0000 120 chr2R:23752662-23752782 1.0000 120 chrX:5988228-5988348 1.0000 120 chr3R:24234009-24234129 1.0000 120 chr2R:10530588-10530708 1.0000 120 chr3R:16119609-16119729 1.0000 120 chr2L:7897391-7897511 1.0000 120 chr3L:1829670-1829790 1.0000 120 chr3L:20432478-20432598 1.0000 120 chr3R:8349926-8350046 1.0000 120 chr3L:14201140-14201260 1.0000 120 chr3R:22357123-22357243 1.0000 120 chr2L:357853-357973 1.0000 120 chr3L:787780-787900 1.0000 120 chrX:11684620-11684740 1.0000 120 chr3R:10049133-10049253 1.0000 120 chrX:2455524-2455644 1.0000 120 chr3L:1031070-1031190 1.0000 120 chr3L:12090260-12090380 1.0000 120 chrX:2658525-2658645 1.0000 120 chrX:20391364-20391484 1.0000 120 chr2R:22925101-22925221 1.0000 120 chr3L:18078708-18078828 1.0000 120 chr3R:24032030-24032150 1.0000 120 chr2R:18631793-18631913 1.0000 120 chr3R:24261744-24261864 1.0000 120 chr3R:11974723-11974843 1.0000 120 chrX:6339156-6339276 1.0000 120 chr2L:7424377-7424497 1.0000 120 chr3R:24630157-24630277 1.0000 120 chr3R:17670841-17670961 1.0000 120 chr2R:17811073-17811193 1.0000 120 chr3L:10387400-10387520 1.0000 120 chr2R:23567394-23567514 1.0000 120 chr2R:14569592-14569712 1.0000 120 chr3L:2772188-2772308 1.0000 120 chr2L:19905328-19905448 1.0000 120 chr2L:11280207-11280327 1.0000 120 chr3L:9968399-9968519 1.0000 120 chr2L:871518-871638 1.0000 120 chr2R:17469166-17469286 1.0000 120 chrX:9089400-9089520 1.0000 120 chr2R:11679296-11679416 1.0000 120 chr3R:5281298-5281418 1.0000 120 chrX:10472810-10472930 1.0000 120 chr3R:15243658-15243778 1.0000 120 chr2L:609642-609762 1.0000 120 chr3R:13845977-13846097 1.0000 120 chr3L:11681942-11682062 1.0000 120 chr3R:24996630-24996750 1.0000 120 chr3L:6458079-6458199 1.0000 120 chr2R:9714237-9714357 1.0000 120 chr2L:20675989-20676109 1.0000 120 chr3L:21894875-21894995 1.0000 120 chr3L:959337-959457 1.0000 120 chr3R:9230372-9230492 1.0000 120 chr2R:23977297-23977417 1.0000 120 chr3L:4707975-4708095 1.0000 120 chr2R:22080184-22080304 1.0000 120 chr3R:15566466-15566586 1.0000 120 chrX:1826326-1826446 1.0000 120 chr2R:8322761-8322881 1.0000 120 chr3R:23201177-23201297 1.0000 120 chr2R:12012816-12012936 1.0000 120 chr2R:24955772-24955892 1.0000 120 chr3L:16408654-16408774 1.0000 120 chr3L:3513203-3513323 1.0000 120 chr3R:29027173-29027293 1.0000 120 chr2R:11324003-11324123 1.0000 120 chr3R:5331929-5332049 1.0000 120 chr3L:14984605-14984725 1.0000 120 chr3R:31700356-31700476 1.0000 120 chr2L:3303540-3303660 1.0000 120 chr3L:20552009-20552129 1.0000 120 chr2L:9158456-9158576 1.0000 120 chrX:3289477-3289597 1.0000 120 chrX:9658144-9658264 1.0000 120 chr2L:7974017-7974137 1.0000 120 chrX:13257227-13257347 1.0000 120 chr2L:1427934-1428054 1.0000 120 chr2R:9548185-9548305 1.0000 120 chr3R:29778223-29778343 1.0000 120 chr3L:14055392-14055512 1.0000 120 chr3L:19899490-19899610 1.0000 120 chrX:2452914-2453034 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Sox14/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Sox14.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.284 C 0.216 G 0.216 T 0.284 Background letter frequencies (from file dataset with add-one prior applied): A 0.284 C 0.216 G 0.216 T 0.284 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AACAAAGA MEME-1 width = 8 sites = 94 llr = 797 E-value = 3.0e-062 ******************************************************************************** -------------------------------------------------------------------------------- Motif AACAAAGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 7a1aaa16 pos.-specific C 1:9::::2 probability G 2:::::92 matrix T :::::::: bits 2.2 2.0 1.8 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ****** (12.2 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AACAAAGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAAGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20675989-20676109 62 2.45e-05 TGCACTGGTT AACAAAGA ACATGAAACG chr3R:5281298-5281418 4 2.45e-05 TAA AACAAAGA ACATGAGGCA chr2L:871518-871638 46 2.45e-05 TCGCACGACT AACAAAGA AAATGGTGAG chrX:5988228-5988348 42 2.45e-05 AGGTGCATCC AACAAAGA GCAGCTGGTG chr2L:10276991-10277111 87 2.45e-05 AATAAAATTA AACAAAGA ACACATTTTA chr2R:19669007-19669127 65 2.45e-05 GACAAACATA AACAAAGA AAGCGAATAT chr3R:14024323-14024443 47 2.45e-05 AGCTAAATTA AACAAAGA CCATTGTATG chr3R:4337771-4337891 105 2.45e-05 TTGTTCCGCG AACAAAGA CTATATTT chr3L:16038060-16038180 76 2.45e-05 TGACAAAGGC AACAAAGA ACGCTGTTTT chr3R:4914454-4914574 67 2.45e-05 CCGTGAAGTA AACAAAGA GCCGAGTCAT chr3L:16927470-16927590 35 2.45e-05 CTATCCCAAG AACAAAGA GCTGCAGACC chr4:1230673-1230793 12 2.45e-05 AAGCGACCCG AACAAAGA GAAGAACAGT chr2R:10429946-10430066 107 2.45e-05 TAGAAGGGAA AACAAAGA AAACTT chr3R:23993237-23993357 46 2.45e-05 aaacgtacac aacaaaga cccacgcaca chr2R:23843266-23843386 105 2.45e-05 ATCGAATTCA AACAAAGA ACTATATA chr2R:24986590-24986710 12 2.45e-05 GAAGCGGGCG AACAAAGA ACGCGCAGCA chr2R:15613878-15613998 108 2.45e-05 GGAAATGTTA Aacaaaga caaag chr3R:8561641-8561761 65 2.45e-05 AAGCCGCGGG AACAAAGA AATTATAAAA chrX:16800055-16800175 51 2.45e-05 ACAAAAGGAA AACAAAGA GAGTGGCTGC chr2R:7150417-7150537 22 2.45e-05 AAGGCGCAGA AACAAAGA AACTTGTCGG chrX:10741819-10741939 20 2.45e-05 TTGATTGCAG AACAAAGA GAAGCAGGCA chr2R:9284285-9284405 36 2.45e-05 TTGCGAGCGA AACAAAGA GATGGGGACT chr2R:24294671-24294791 25 2.45e-05 AAGCCGGCAC AACAAAGA GCAACAGACG chrX:1827688-1827808 66 2.45e-05 GTGGCAGATG AACAAAGA AGCTGCGAGC chr2L:128479-128599 54 2.45e-05 CTGCTAAAAG AACAAAGA AACCAGAAAC chr2R:14221050-14221170 80 2.45e-05 CCTGAACTTG AACAAAGA ACGAAATCAG chr3R:28811995-28812115 61 2.45e-05 GTCTTGACCA AACAAAGA GATATCGATA chr3L:11124124-11124244 78 2.45e-05 ACTTCCCCAC AACAAAGA GCCCCACCCC chrX:10734886-10735006 66 2.45e-05 CAGCATCCAT AACAAAGA CAAATTAAAC chr3R:11679680-11679800 104 2.45e-05 TTCAAAACAA AACAAAGA CGGCGTATT chr2L:1989645-1989765 85 2.45e-05 CGTTCTTCTG AACAAAGA ATAGCCTGAT chr2R:23718191-23718311 41 2.45e-05 CACAATGACG AACAAAGA AGCGCTGGCA chr3L:3376682-3376802 90 2.45e-05 ATTGCGGCAA AACAAAGA AAACGCAGAG chr3R:24046619-24046739 29 2.45e-05 GCATGATGGG AACAAAGA AGGCGGCAAA chr2L:18689607-18689727 45 2.45e-05 AAATTAAAAG AACAAAGA GCTGTTCAGT chr2R:17581474-17581594 28 2.45e-05 ACGATTAAAG AACAAAGA AGCCGGTGAC chr2R:12917350-12917470 112 2.45e-05 AGAAAGCTGG AACAAAGA A chrX:10209737-10209857 28 2.45e-05 GAACGGGCAG AACAAAGA GCGCACGAAG chrX:11684620-11684740 5 4.31e-05 ATGA AACAAAGC ACACAGAGAA chr2L:357853-357973 21 4.31e-05 ATTTGTAAAC AACAAAGC AAGACATTAT chr3R:10886451-10886571 10 4.31e-05 CCATCAGTT AACAAAGC ACAGCGGCCA chr3R:30772919-30773039 44 4.31e-05 CCCTCGGGGG AACAAAGC AACAGCAATC chr3L:8968458-8968578 54 4.31e-05 TGGACGCCAC AACAAAGC TTTCCGGCTC chr2R:22080184-22080304 15 6.17e-05 TAAAATCGCA AACAAAGG TATTAGGAGT chr3R:31608731-31608851 83 6.17e-05 TGGGGAGAAC AACAAAGG AAAAGGGGAA chr3R:27925183-27925303 96 6.17e-05 AAGGCTGGGA AACAAAGG ATATATATTT chr2R:8024472-8024592 60 6.17e-05 TTACTCGAAA AACAAAGG CAATCAACGG chr2R:12981069-12981189 99 6.17e-05 GGGGATAGAG AACAAAGG GCTGCACATA chr3R:13767412-13767532 44 6.17e-05 TCTACGCAGG AACAAAGG CGCAATCCAA chr3L:7368373-7368493 41 6.17e-05 TTGCCAATTG AACAAAGG CACCGAAAGA chrX:21368554-21368674 104 6.17e-05 CACAATACAA AACAAAGG CAGTGCGTT chr3R:11615859-11615979 18 6.17e-05 GTCTGGCTGC AACAAAGG AATAACACAC chr3L:3901941-3902061 23 6.17e-05 AGAAACAGGG AACAAAGG GTAGTTGAGA chr2R:9839505-9839625 16 6.17e-05 TTGTTATGTA AACAAAGG AGCACGAATT chr3R:22357123-22357243 112 8.03e-05 CTGCCCAGTT GACAAAGA A chr3R:24234009-24234129 58 8.03e-05 TGGGCAGCGT GACAAAGA TGTCCGTTGC chrX:2270091-2270211 36 8.03e-05 GAAAACCCAT GACAAAGA GGAAAGTTTC chr3L:12040436-12040556 61 8.03e-05 GTGAAACAGA GACAAAGA CAAGTTTTTC chr2L:5294548-5294668 29 8.03e-05 CTGCTGAAGA GACAAAGA AAGCGCGATA chr3R:23729900-23730020 64 8.03e-05 GCTCGTTGAG GACAAAGA GGTGAGTAAA chr2R:13589286-13589406 36 8.03e-05 CACGGAGAAA GACAAAGA AAGTCCCCCC chr2L:9493995-9494115 39 8.03e-05 TGAAAAGGCA GACAAAGA AGAGAAGAGA chr3L:11681942-11682062 107 9.90e-05 CACATTGCTG CACAAAGA AGAATT chr2R:16027972-16028092 28 9.90e-05 CAAAAAATTA CACAAAGA AAAAAGTGGC chr3L:12258777-12258897 52 9.90e-05 CAGAGCCGAG CACAAAGA GCGGTGGCAT chr2R:18806093-18806213 78 9.90e-05 aagagagggg cacaaaga atgtgatcga chr3L:21343659-21343779 82 9.90e-05 GCACAAAACG CACAAAGA ACTAAGCAAT chr2L:7424377-7424497 94 1.13e-04 TTTTAACCCA GACAAAGC TCATTGTGCG chrX:20391364-20391484 109 1.13e-04 ACGTGGAGCA GACAAAGC AGCT chr3L:1031070-1031190 101 1.13e-04 GAAATGCACA GACAAAGC GCACAGTGGG chr3L:9678374-9678494 50 1.13e-04 AAATGAGGAA GACAAAGC AAACAAACAA chr2R:8143300-8143420 17 1.13e-04 ACAGACCAGA GACAAAGC CGCGTAGCAA chr2L:9158456-9158576 84 1.59e-04 CGAATCATTG AACAAAAA GGTGTGAAAG chr3R:31700356-31700476 105 1.59e-04 TTCATCTGCT AACAAAAA TCAGATTC chr3R:29027173-29027293 112 1.59e-04 TTGATTGTTA AACAAAAA G chr2L:14624019-14624139 38 1.59e-04 TTGAGAATGT AACAAAAA TATTTTGAAT chr3L:20430366-20430486 60 1.59e-04 TCAAACTCTT AACAAAAA GAAAACAATA chr3R:27140122-27140242 108 1.74e-04 GTTGACACAC CACAAAGC AAAGC chr2L:1901398-1901518 14 1.74e-04 TTATGCCACA CACAAAGC GCCAAGGAAA chr3R:31611364-31611484 65 1.74e-04 AGCCCACTCA CACAAAGC CATCCAGCCG chr3R:29993303-29993423 78 1.74e-04 TTGATAACCA CACAAAGC TTCGAAGTCT chr2R:24783528-24783648 56 1.88e-04 GGAGTCCAAA CACAAAGG TTCCATTTGG chrX:9658144-9658264 29 2.20e-04 TCGGCTTAAA AAAAAAGA AAATAAAGCT chr3R:5331929-5332049 71 2.20e-04 GTTCTAGCTT AAAAAAGA GTATATGGGC chrX:6803865-6803985 85 2.20e-04 TTTGCCCATA AAAAAAGA AGCGGCGTCG chr3R:8349926-8350046 100 2.44e-04 ACCGCGACAA AACAAAAC GCGGAAACGC chr2R:22925101-22925221 67 2.69e-04 CTGAGAATTA AACAAAAG CGATTTGTTC chr3L:2568415-2568535 69 2.69e-04 TGATTAAGTA AACAAAAG CAGCCGCAAC chrX:3289477-3289597 11 3.18e-04 ataataaaat aaaaaagc accacatccc chrX:6339156-6339276 100 3.18e-04 ACTATAAATT GACAAAAA GTTGTGTAAC chr3L:787780-787900 41 3.18e-04 ATTTTAGAAG GACAAAAA ATCCCTTTTC chr2R:7962575-7962695 13 3.18e-04 ATAAACATCC AAAAAAGC CGGAAGTGGT chr2R:9284487-9284607 100 3.42e-04 CGCGCAGCTA AAAAAAGG ATGGGAAGCG chr3L:21497452-21497572 80 3.42e-04 CCATATACTA AAAAAAGG CAGCTCATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAAGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20675989-20676109 2.4e-05 61_[+1]_51 chr3R:5281298-5281418 2.4e-05 3_[+1]_109 chr2L:871518-871638 2.4e-05 45_[+1]_67 chrX:5988228-5988348 2.4e-05 41_[+1]_71 chr2L:10276991-10277111 2.4e-05 86_[+1]_26 chr2R:19669007-19669127 2.4e-05 64_[+1]_48 chr3R:14024323-14024443 2.4e-05 46_[+1]_66 chr3R:4337771-4337891 2.4e-05 104_[+1]_8 chr3L:16038060-16038180 2.4e-05 75_[+1]_37 chr3R:4914454-4914574 2.4e-05 66_[+1]_46 chr3L:16927470-16927590 2.4e-05 34_[+1]_78 chr4:1230673-1230793 2.4e-05 11_[+1]_101 chr2R:10429946-10430066 2.4e-05 106_[+1]_6 chr3R:23993237-23993357 2.4e-05 45_[+1]_67 chr2R:23843266-23843386 2.4e-05 104_[+1]_8 chr2R:24986590-24986710 2.4e-05 11_[+1]_101 chr2R:15613878-15613998 2.4e-05 107_[+1]_5 chr3R:8561641-8561761 2.4e-05 64_[+1]_48 chrX:16800055-16800175 2.4e-05 50_[+1]_62 chr2R:7150417-7150537 2.4e-05 21_[+1]_91 chrX:10741819-10741939 2.4e-05 19_[+1]_93 chr2R:9284285-9284405 2.4e-05 35_[+1]_77 chr2R:24294671-24294791 2.4e-05 24_[+1]_88 chrX:1827688-1827808 2.4e-05 65_[+1]_47 chr2L:128479-128599 2.4e-05 53_[+1]_59 chr2R:14221050-14221170 2.4e-05 79_[+1]_33 chr3R:28811995-28812115 2.4e-05 60_[+1]_52 chr3L:11124124-11124244 2.4e-05 77_[+1]_35 chrX:10734886-10735006 2.4e-05 65_[+1]_47 chr3R:11679680-11679800 2.4e-05 103_[+1]_9 chr2L:1989645-1989765 2.4e-05 84_[+1]_28 chr2R:23718191-23718311 2.4e-05 40_[+1]_72 chr3L:3376682-3376802 2.4e-05 89_[+1]_23 chr3R:24046619-24046739 2.4e-05 28_[+1]_84 chr2L:18689607-18689727 2.4e-05 44_[+1]_68 chr2R:17581474-17581594 2.4e-05 27_[+1]_85 chr2R:12917350-12917470 2.4e-05 111_[+1]_1 chrX:10209737-10209857 2.4e-05 27_[+1]_85 chrX:11684620-11684740 4.3e-05 4_[+1]_108 chr2L:357853-357973 4.3e-05 20_[+1]_92 chr3R:10886451-10886571 4.3e-05 9_[+1]_103 chr3R:30772919-30773039 4.3e-05 43_[+1]_69 chr3L:8968458-8968578 4.3e-05 53_[+1]_59 chr2R:22080184-22080304 6.2e-05 14_[+1]_98 chr3R:31608731-31608851 6.2e-05 82_[+1]_30 chr3R:27925183-27925303 6.2e-05 95_[+1]_17 chr2R:8024472-8024592 6.2e-05 59_[+1]_53 chr2R:12981069-12981189 6.2e-05 98_[+1]_14 chr3R:13767412-13767532 6.2e-05 43_[+1]_69 chr3L:7368373-7368493 6.2e-05 40_[+1]_72 chrX:21368554-21368674 6.2e-05 103_[+1]_9 chr3R:11615859-11615979 6.2e-05 17_[+1]_95 chr3L:3901941-3902061 6.2e-05 22_[+1]_90 chr2R:9839505-9839625 6.2e-05 15_[+1]_97 chr3R:22357123-22357243 8e-05 111_[+1]_1 chr3R:24234009-24234129 8e-05 57_[+1]_55 chrX:2270091-2270211 8e-05 35_[+1]_77 chr3L:12040436-12040556 8e-05 60_[+1]_52 chr2L:5294548-5294668 8e-05 28_[+1]_84 chr3R:23729900-23730020 8e-05 63_[+1]_49 chr2R:13589286-13589406 8e-05 35_[+1]_77 chr2L:9493995-9494115 8e-05 38_[+1]_74 chr3L:11681942-11682062 9.9e-05 106_[+1]_6 chr2R:16027972-16028092 9.9e-05 27_[+1]_85 chr3L:12258777-12258897 9.9e-05 51_[+1]_61 chr2R:18806093-18806213 9.9e-05 77_[+1]_35 chr3L:21343659-21343779 9.9e-05 81_[+1]_31 chr2L:7424377-7424497 0.00011 93_[+1]_19 chrX:20391364-20391484 0.00011 108_[+1]_4 chr3L:1031070-1031190 0.00011 100_[+1]_12 chr3L:9678374-9678494 0.00011 49_[+1]_63 chr2R:8143300-8143420 0.00011 16_[+1]_96 chr2L:9158456-9158576 0.00016 83_[+1]_29 chr3R:31700356-31700476 0.00016 104_[+1]_8 chr3R:29027173-29027293 0.00016 111_[+1]_1 chr2L:14624019-14624139 0.00016 37_[+1]_75 chr3L:20430366-20430486 0.00016 59_[+1]_53 chr3R:27140122-27140242 0.00017 107_[+1]_5 chr2L:1901398-1901518 0.00017 13_[+1]_99 chr3R:31611364-31611484 0.00017 64_[+1]_48 chr3R:29993303-29993423 0.00017 77_[+1]_35 chr2R:24783528-24783648 0.00019 55_[+1]_57 chrX:9658144-9658264 0.00022 28_[+1]_84 chr3R:5331929-5332049 0.00022 70_[+1]_42 chrX:6803865-6803985 0.00022 84_[+1]_28 chr3R:8349926-8350046 0.00024 99_[+1]_13 chr2R:22925101-22925221 0.00027 66_[+1]_46 chr3L:2568415-2568535 0.00027 68_[+1]_44 chrX:3289477-3289597 0.00032 10_[+1]_102 chrX:6339156-6339276 0.00032 99_[+1]_13 chr3L:787780-787900 0.00032 40_[+1]_72 chr2R:7962575-7962695 0.00032 12_[+1]_100 chr2R:9284487-9284607 0.00034 99_[+1]_13 chr3L:21497452-21497572 0.00034 79_[+1]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAAGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AACAAAGA width=8 seqs=94 chr2L:20675989-20676109 ( 62) AACAAAGA 1 chr3R:5281298-5281418 ( 4) AACAAAGA 1 chr2L:871518-871638 ( 46) AACAAAGA 1 chrX:5988228-5988348 ( 42) AACAAAGA 1 chr2L:10276991-10277111 ( 87) AACAAAGA 1 chr2R:19669007-19669127 ( 65) AACAAAGA 1 chr3R:14024323-14024443 ( 47) AACAAAGA 1 chr3R:4337771-4337891 ( 105) AACAAAGA 1 chr3L:16038060-16038180 ( 76) AACAAAGA 1 chr3R:4914454-4914574 ( 67) AACAAAGA 1 chr3L:16927470-16927590 ( 35) AACAAAGA 1 chr4:1230673-1230793 ( 12) AACAAAGA 1 chr2R:10429946-10430066 ( 107) AACAAAGA 1 chr3R:23993237-23993357 ( 46) AACAAAGA 1 chr2R:23843266-23843386 ( 105) AACAAAGA 1 chr2R:24986590-24986710 ( 12) AACAAAGA 1 chr2R:15613878-15613998 ( 108) AACAAAGA 1 chr3R:8561641-8561761 ( 65) AACAAAGA 1 chrX:16800055-16800175 ( 51) AACAAAGA 1 chr2R:7150417-7150537 ( 22) AACAAAGA 1 chrX:10741819-10741939 ( 20) AACAAAGA 1 chr2R:9284285-9284405 ( 36) AACAAAGA 1 chr2R:24294671-24294791 ( 25) AACAAAGA 1 chrX:1827688-1827808 ( 66) AACAAAGA 1 chr2L:128479-128599 ( 54) AACAAAGA 1 chr2R:14221050-14221170 ( 80) AACAAAGA 1 chr3R:28811995-28812115 ( 61) AACAAAGA 1 chr3L:11124124-11124244 ( 78) AACAAAGA 1 chrX:10734886-10735006 ( 66) AACAAAGA 1 chr3R:11679680-11679800 ( 104) AACAAAGA 1 chr2L:1989645-1989765 ( 85) AACAAAGA 1 chr2R:23718191-23718311 ( 41) AACAAAGA 1 chr3L:3376682-3376802 ( 90) AACAAAGA 1 chr3R:24046619-24046739 ( 29) AACAAAGA 1 chr2L:18689607-18689727 ( 45) AACAAAGA 1 chr2R:17581474-17581594 ( 28) AACAAAGA 1 chr2R:12917350-12917470 ( 112) AACAAAGA 1 chrX:10209737-10209857 ( 28) AACAAAGA 1 chrX:11684620-11684740 ( 5) AACAAAGC 1 chr2L:357853-357973 ( 21) AACAAAGC 1 chr3R:10886451-10886571 ( 10) AACAAAGC 1 chr3R:30772919-30773039 ( 44) AACAAAGC 1 chr3L:8968458-8968578 ( 54) AACAAAGC 1 chr2R:22080184-22080304 ( 15) AACAAAGG 1 chr3R:31608731-31608851 ( 83) AACAAAGG 1 chr3R:27925183-27925303 ( 96) AACAAAGG 1 chr2R:8024472-8024592 ( 60) AACAAAGG 1 chr2R:12981069-12981189 ( 99) AACAAAGG 1 chr3R:13767412-13767532 ( 44) AACAAAGG 1 chr3L:7368373-7368493 ( 41) AACAAAGG 1 chrX:21368554-21368674 ( 104) AACAAAGG 1 chr3R:11615859-11615979 ( 18) AACAAAGG 1 chr3L:3901941-3902061 ( 23) AACAAAGG 1 chr2R:9839505-9839625 ( 16) AACAAAGG 1 chr3R:22357123-22357243 ( 112) GACAAAGA 1 chr3R:24234009-24234129 ( 58) GACAAAGA 1 chrX:2270091-2270211 ( 36) GACAAAGA 1 chr3L:12040436-12040556 ( 61) GACAAAGA 1 chr2L:5294548-5294668 ( 29) GACAAAGA 1 chr3R:23729900-23730020 ( 64) GACAAAGA 1 chr2R:13589286-13589406 ( 36) GACAAAGA 1 chr2L:9493995-9494115 ( 39) GACAAAGA 1 chr3L:11681942-11682062 ( 107) CACAAAGA 1 chr2R:16027972-16028092 ( 28) CACAAAGA 1 chr3L:12258777-12258897 ( 52) CACAAAGA 1 chr2R:18806093-18806213 ( 78) CACAAAGA 1 chr3L:21343659-21343779 ( 82) CACAAAGA 1 chr2L:7424377-7424497 ( 94) GACAAAGC 1 chrX:20391364-20391484 ( 109) GACAAAGC 1 chr3L:1031070-1031190 ( 101) GACAAAGC 1 chr3L:9678374-9678494 ( 50) GACAAAGC 1 chr2R:8143300-8143420 ( 17) GACAAAGC 1 chr2L:9158456-9158576 ( 84) AACAAAAA 1 chr3R:31700356-31700476 ( 105) AACAAAAA 1 chr3R:29027173-29027293 ( 112) AACAAAAA 1 chr2L:14624019-14624139 ( 38) AACAAAAA 1 chr3L:20430366-20430486 ( 60) AACAAAAA 1 chr3R:27140122-27140242 ( 108) CACAAAGC 1 chr2L:1901398-1901518 ( 14) CACAAAGC 1 chr3R:31611364-31611484 ( 65) CACAAAGC 1 chr3R:29993303-29993423 ( 78) CACAAAGC 1 chr2R:24783528-24783648 ( 56) CACAAAGG 1 chrX:9658144-9658264 ( 29) AAAAAAGA 1 chr3R:5331929-5332049 ( 71) AAAAAAGA 1 chrX:6803865-6803985 ( 85) AAAAAAGA 1 chr3R:8349926-8350046 ( 100) AACAAAAC 1 chr2R:22925101-22925221 ( 67) AACAAAAG 1 chr3L:2568415-2568535 ( 69) AACAAAAG 1 chrX:3289477-3289597 ( 11) AAAAAAGC 1 chrX:6339156-6339276 ( 100) GACAAAAA 1 chr3L:787780-787900 ( 41) GACAAAAA 1 chr2R:7962575-7962695 ( 13) AAAAAAGC 1 chr2R:9284487-9284607 ( 100) AAAAAAGG 1 chr3L:21497452-21497572 ( 80) AAAAAAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAAGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.31121 E= 3.0e-062 137 -102 -43 -1320 181 -1320 -1320 -1320 -193 210 -1320 -1320 181 -1320 -1320 -1320 181 -1320 -1320 -1320 181 -1320 -1320 -1320 -142 -1320 205 -1320 119 -25 -34 -1320 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAAGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 94 E= 3.0e-062 0.734043 0.106383 0.159574 0.000000 1.000000 0.000000 0.000000 0.000000 0.074468 0.925532 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.106383 0.000000 0.893617 0.000000 0.648936 0.180851 0.170213 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAAGA MEME-1 regular expression -------------------------------------------------------------------------------- AACAAAGA -------------------------------------------------------------------------------- Time 7.55 secs. ******************************************************************************** ******************************************************************************** MOTIF TYCTTTGT MEME-2 width = 8 sites = 81 llr = 662 E-value = 1.1e-035 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYCTTTGT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 238::::: probability G 11::::a: matrix T 662aaa:a bits 2.2 2.0 * 1.8 ***** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ****** (11.8 bits) 0.9 ****** 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCTTTGT consensus CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCTTTGT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:19899490-19899610 56 2.45e-05 ACGAGCAGTT TTCTTTGT GCTACACTTC chr2R:10530588-10530708 36 2.45e-05 TGAGAGAGCT TTCTTTGT GAAGGGAAAA chr3R:25097586-25097706 90 2.45e-05 GCCACCTTAC TTCTTTGT GGTTGTTTGC chr2L:2873523-2873643 98 2.45e-05 ACACTCTCTT TTCTTTGT GACTCACCTC chr3L:17557204-17557324 48 2.45e-05 AGAGCGCTCT TTCTTTGT CGGCCGTGCT chr2R:11641962-11642082 79 2.45e-05 CGTCACGACA TTCTTTGT TCAATTCCCC chr2R:12981069-12981189 43 2.45e-05 TGCCAGCCGT TTCTTTGT TCGTTTCTGT chrX:9251282-9251402 32 2.45e-05 TTCACTTGGG TTCTTTGT CTGCTCTCTt chr2L:7199895-7200015 66 2.45e-05 CCTGCAACAG TTCTTTGT TCCCAGCCAT chr2L:7701481-7701601 34 2.45e-05 TCACAGTATT TTCTTTGT CTTCGAGTTA chrX:13830224-13830344 27 2.45e-05 TTTCTGCATT TTCTTTGT GCGCCTGCAT chrX:476517-476637 5 2.45e-05 GGTT TTCTTTGT GTCTTTACAC chr3L:20518630-20518750 7 2.45e-05 GGCAGC TTCTTTGT CTTTGTTTTC chr2L:22134163-22134283 44 2.45e-05 TCTAACCAGT TTCTTTGT TCGCCTTGCT chr2R:22103103-22103223 37 2.45e-05 TAGTATATTT TTCTTTGT TGTTTTGGGG chr3L:20430366-20430486 9 2.45e-05 TACGCTGG TTCTTTGT CTTTTCACCA chr3L:16639161-16639281 73 2.45e-05 AAGGAGGCAT TTCTTTGT TGCGAACCCA chr2R:7962575-7962695 91 2.45e-05 TAACGCGATT TTCTTTGT TTGCGGGGCG chr3R:29993303-29993423 40 2.45e-05 AATTTCTGAT TTCTTTGT TTATAATTTT chr3R:24016087-24016207 79 2.45e-05 CAACAATGTT TTCTTTGT TGGGAAGGAG chr2L:5295162-5295282 100 2.45e-05 GATCGCTCTC TTCTTTGT CCGTCGCTTG chr3L:883949-884069 75 2.45e-05 TTCCCATGCC TTCTTTGT TAATGAAAAT chr3R:23729900-23730020 24 2.45e-05 TGTACTTTTA TTCTTTGT TACAGCCTGG chr2R:14543542-14543662 68 2.45e-05 AAATGCGCTT TTCTTTGT TCGCATCTGG chr3R:10049133-10049253 81 4.31e-05 TCTCTTATTT TCCTTTGT CAAAATAAAA chr2L:8424183-8424303 94 4.31e-05 CTCTGCGTTT TCCTTTGT CGTCGTCCAT chr2L:107795-107915 25 4.31e-05 TCTTGTCTGA TCCTTTGT TCAAAACCAC chrX:7969473-7969593 8 4.31e-05 TCGATAT TCCTTTGT GAAGGCTAAA chr2R:24875760-24875880 40 4.31e-05 TTATAATTTT TCCTTTGT CGCTCCTAAA chrX:18777103-18777223 50 4.31e-05 AACAGTTTGC TCCTTTGT TTCCTGCACT chrX:11149874-11149994 21 4.31e-05 TTAATTTGTT TCCTTTGT CTCTGTTCTC chr2L:156028-156148 46 4.31e-05 GACTTTCACT TCCTTTGT TCTCACTGAA chrX:6803865-6803985 68 4.31e-05 gCAAAACTGC TCCTTTGT TTGCCCATAA chrX:11819523-11819643 33 4.31e-05 ACCAAGGGGT TCCTTTGT TCGCATCCAA chr2L:20069340-20069460 21 4.31e-05 ACTTTCGGTT TCCTTTGT TCCCCCAGCA chr3L:17973233-17973353 97 6.17e-05 TTATAATTCA CTCTTTGT TTGTTTGTTA chr3R:16227325-16227445 13 6.17e-05 TTTTTTCTCC CTCTTTGT TTTCTTTCTT chr3L:21343659-21343779 4 6.17e-05 TTA CTCTTTGT TTAATTCTGC chr3L:1000831-1000951 51 6.17e-05 CGGGGGAACT CTCTTTGT GCCCGTGAGT chr2R:11648527-11648647 57 6.17e-05 CTCTCCCTCT CTCTTTGT TTCTCTCGCG chr3L:9671503-9671623 16 6.17e-05 ACGCTGTGGG CTCTTTGT TGGTGTAACC chr3L:7328556-7328676 44 7.59e-05 TGTACTAGTA CCCTTTGT CTAACAACTA chrX:7967687-7967807 60 7.59e-05 AAAATCACAG CCCTTTGT TGTTGCCACC chr3L:22466500-22466620 48 7.59e-05 AACTTGATTG CCCTTTGT GTGCCAATTA chr2L:2038407-2038527 73 7.59e-05 CAGATAGCTT CCCTTTGT TCATCGGCCC chr3R:5622244-5622364 49 7.59e-05 TTGTCGCCGG CCCTTTGT TCGCCTCGGA chrX:21358521-21358641 71 7.59e-05 TCCTGCACCG CCCTTTGT CCACTCGGTG chr2R:14569592-14569712 59 1.13e-04 tttttttttt tgctttgt ggctttgttt chr3L:12090260-12090380 1 1.13e-04 . tgctttgt tcgactttct chr3R:31608731-31608851 6 1.13e-04 ACAAA GTCTTTGT TTGCAGCTCG chr3R:25881930-25882050 27 1.13e-04 TAATAGTTCA TGCTTTGT TCATTCTTCT chr3R:23993508-23993628 16 1.13e-04 GCTCGACCTC GTCTTTGT CTGTACTCAG chr2R:14221050-14221170 41 1.13e-04 ATTTGCAGCC GTCTTTGT TGCTTTGTTG chr3L:17530587-17530707 54 1.13e-04 TTTGTTTGCT GTCTTTGT TGTCTGTTCG chr3L:18078708-18078828 18 1.45e-04 GTATGCTATG TTTTTTGT ATTCGACAGC chr2R:10430145-10430265 85 1.45e-04 gctgttgtat ttttttgt gctgcagctg chr3L:19833437-19833557 47 1.45e-04 GTTTATTGAT TTTTTTGT CCGTGTTTTA chr2L:1901398-1901518 38 1.45e-04 GAAATGCAGT TTTTTTGT GTCTCCCCTG chr3R:24032030-24032150 112 1.59e-04 CACACTGCGA GCCTTTGT A chr3R:31611364-31611484 113 1.59e-04 TTCGCGTGCC GCCTTTGT chr2R:9548185-9548305 31 1.98e-04 CATTGAACTT TCTTTTGT AAATGTTTTC chr2R:9714237-9714357 23 1.98e-04 GCTGTGACTC CGCTTTGT CTATGGCCTG chr3R:4337771-4337891 91 1.98e-04 TGTGCAACAA TCTTTTGT TCCGCGAACA chr3L:2632693-2632813 61 1.98e-04 TGCCGCCGCT CGCTTTGT CCGCCTCTTC chr2L:7424377-7424497 52 2.23e-04 TTTTGGGGAA CTTTTTGT CGCTCAAATA chr2R:22925101-22925221 46 2.23e-04 ACAAGCGTTT CTTTTTGT TTGCTGAGAA chr3L:16408654-16408774 46 2.47e-04 CGTCTCCTCA ATCTTTGT TCTTTCATTT chr3L:959337-959457 67 2.47e-04 ATTTTCCAGA ATCTTTGT AAGTGTATTC chr3R:27925183-27925303 67 2.66e-04 ATACCGAATC CCTTTTGT GCGGCAAATA chr3R:16290509-16290629 69 2.66e-04 CCTTCCACTT CCTTTTGT GCATTTGTTG chr3R:24630157-24630277 15 2.98e-04 ACTCTCCAAC ACCTTTGT TTACATCGCC chr3L:3901941-3902061 42 2.98e-04 TAGTTGAGAA ACCTTTGT TCCGTTGCTT chr3L:20517531-20517651 89 2.98e-04 ACCCTCTTCG GGCTTTGT CGGGTGTGCA chr3L:14984605-14984725 79 3.47e-04 ACTATTTGAA GTTTTTGT AAATTGGTAA chr3L:1829670-1829790 36 3.47e-04 TTATATATGA TGTTTTGT TTTATTGTTT chr3L:16038060-16038180 88 3.47e-04 CAAAGAACGC TGTTTTGT CACTCAGCTG chr3R:23386272-23386392 63 3.47e-04 ATCACACCTT TGTTTTGT TTTAAAGCTT chr3L:7368373-7368493 4 3.47e-04 TAT GTTTTTGT TCTTATTGGA chr2R:23752662-23752782 77 3.72e-04 GGAGCGGATC TTCTTTCT ACTAAGGCAG chr3L:1496568-1496688 34 3.72e-04 GGTTTCTATT TTCTTTCT TCTCGCCAGT chr3L:14201140-14201260 82 4.46e-04 GATCGTGCCT CTCTTTCT GGTCGTGTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCTTTGT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:19899490-19899610 2.4e-05 55_[+2]_57 chr2R:10530588-10530708 2.4e-05 35_[+2]_77 chr3R:25097586-25097706 2.4e-05 89_[+2]_23 chr2L:2873523-2873643 2.4e-05 97_[+2]_15 chr3L:17557204-17557324 2.4e-05 47_[+2]_65 chr2R:11641962-11642082 2.4e-05 78_[+2]_34 chr2R:12981069-12981189 2.4e-05 42_[+2]_70 chrX:9251282-9251402 2.4e-05 31_[+2]_81 chr2L:7199895-7200015 2.4e-05 65_[+2]_47 chr2L:7701481-7701601 2.4e-05 33_[+2]_79 chrX:13830224-13830344 2.4e-05 26_[+2]_86 chrX:476517-476637 2.4e-05 4_[+2]_108 chr3L:20518630-20518750 2.4e-05 6_[+2]_106 chr2L:22134163-22134283 2.4e-05 43_[+2]_69 chr2R:22103103-22103223 2.4e-05 36_[+2]_76 chr3L:20430366-20430486 2.4e-05 8_[+2]_104 chr3L:16639161-16639281 2.4e-05 72_[+2]_40 chr2R:7962575-7962695 2.4e-05 90_[+2]_22 chr3R:29993303-29993423 2.4e-05 39_[+2]_73 chr3R:24016087-24016207 2.4e-05 78_[+2]_34 chr2L:5295162-5295282 2.4e-05 99_[+2]_13 chr3L:883949-884069 2.4e-05 74_[+2]_38 chr3R:23729900-23730020 2.4e-05 23_[+2]_89 chr2R:14543542-14543662 2.4e-05 67_[+2]_45 chr3R:10049133-10049253 4.3e-05 80_[+2]_32 chr2L:8424183-8424303 4.3e-05 93_[+2]_19 chr2L:107795-107915 4.3e-05 24_[+2]_88 chrX:7969473-7969593 4.3e-05 7_[+2]_105 chr2R:24875760-24875880 4.3e-05 39_[+2]_73 chrX:18777103-18777223 4.3e-05 49_[+2]_63 chrX:11149874-11149994 4.3e-05 20_[+2]_92 chr2L:156028-156148 4.3e-05 45_[+2]_67 chrX:6803865-6803985 4.3e-05 67_[+2]_45 chrX:11819523-11819643 4.3e-05 32_[+2]_80 chr2L:20069340-20069460 4.3e-05 20_[+2]_92 chr3L:17973233-17973353 6.2e-05 96_[+2]_16 chr3R:16227325-16227445 6.2e-05 12_[+2]_100 chr3L:21343659-21343779 6.2e-05 3_[+2]_109 chr3L:1000831-1000951 6.2e-05 50_[+2]_62 chr2R:11648527-11648647 6.2e-05 56_[+2]_56 chr3L:9671503-9671623 6.2e-05 15_[+2]_97 chr3L:7328556-7328676 7.6e-05 43_[+2]_69 chrX:7967687-7967807 7.6e-05 59_[+2]_53 chr3L:22466500-22466620 7.6e-05 47_[+2]_65 chr2L:2038407-2038527 7.6e-05 72_[+2]_40 chr3R:5622244-5622364 7.6e-05 48_[+2]_64 chrX:21358521-21358641 7.6e-05 70_[+2]_42 chr2R:14569592-14569712 0.00011 58_[+2]_54 chr3L:12090260-12090380 0.00011 [+2]_112 chr3R:31608731-31608851 0.00011 5_[+2]_107 chr3R:25881930-25882050 0.00011 26_[+2]_86 chr3R:23993508-23993628 0.00011 15_[+2]_97 chr2R:14221050-14221170 0.00011 40_[+2]_72 chr3L:17530587-17530707 0.00011 53_[+2]_59 chr3L:18078708-18078828 0.00015 17_[+2]_95 chr2R:10430145-10430265 0.00015 84_[+2]_28 chr3L:19833437-19833557 0.00015 46_[+2]_66 chr2L:1901398-1901518 0.00015 37_[+2]_75 chr3R:24032030-24032150 0.00016 111_[+2]_1 chr3R:31611364-31611484 0.00016 112_[+2] chr2R:9548185-9548305 0.0002 30_[+2]_82 chr2R:9714237-9714357 0.0002 22_[+2]_90 chr3R:4337771-4337891 0.0002 90_[+2]_22 chr3L:2632693-2632813 0.0002 60_[+2]_52 chr2L:7424377-7424497 0.00022 51_[+2]_61 chr2R:22925101-22925221 0.00022 45_[+2]_67 chr3L:16408654-16408774 0.00025 45_[+2]_67 chr3L:959337-959457 0.00025 66_[+2]_46 chr3R:27925183-27925303 0.00027 66_[+2]_46 chr3R:16290509-16290629 0.00027 68_[+2]_44 chr3R:24630157-24630277 0.0003 14_[+2]_98 chr3L:3901941-3902061 0.0003 41_[+2]_71 chr3L:20517531-20517651 0.0003 88_[+2]_24 chr3L:14984605-14984725 0.00035 78_[+2]_34 chr3L:1829670-1829790 0.00035 35_[+2]_77 chr3L:16038060-16038180 0.00035 87_[+2]_25 chr3R:23386272-23386392 0.00035 62_[+2]_50 chr3L:7368373-7368493 0.00035 3_[+2]_109 chr2R:23752662-23752782 0.00037 76_[+2]_36 chr3L:1496568-1496688 0.00037 33_[+2]_79 chr3L:14201140-14201260 0.00045 81_[+2]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCTTTGT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYCTTTGT width=8 seqs=81 chr3L:19899490-19899610 ( 56) TTCTTTGT 1 chr2R:10530588-10530708 ( 36) TTCTTTGT 1 chr3R:25097586-25097706 ( 90) TTCTTTGT 1 chr2L:2873523-2873643 ( 98) TTCTTTGT 1 chr3L:17557204-17557324 ( 48) TTCTTTGT 1 chr2R:11641962-11642082 ( 79) TTCTTTGT 1 chr2R:12981069-12981189 ( 43) TTCTTTGT 1 chrX:9251282-9251402 ( 32) TTCTTTGT 1 chr2L:7199895-7200015 ( 66) TTCTTTGT 1 chr2L:7701481-7701601 ( 34) TTCTTTGT 1 chrX:13830224-13830344 ( 27) TTCTTTGT 1 chrX:476517-476637 ( 5) TTCTTTGT 1 chr3L:20518630-20518750 ( 7) TTCTTTGT 1 chr2L:22134163-22134283 ( 44) TTCTTTGT 1 chr2R:22103103-22103223 ( 37) TTCTTTGT 1 chr3L:20430366-20430486 ( 9) TTCTTTGT 1 chr3L:16639161-16639281 ( 73) TTCTTTGT 1 chr2R:7962575-7962695 ( 91) TTCTTTGT 1 chr3R:29993303-29993423 ( 40) TTCTTTGT 1 chr3R:24016087-24016207 ( 79) TTCTTTGT 1 chr2L:5295162-5295282 ( 100) TTCTTTGT 1 chr3L:883949-884069 ( 75) TTCTTTGT 1 chr3R:23729900-23730020 ( 24) TTCTTTGT 1 chr2R:14543542-14543662 ( 68) TTCTTTGT 1 chr3R:10049133-10049253 ( 81) TCCTTTGT 1 chr2L:8424183-8424303 ( 94) TCCTTTGT 1 chr2L:107795-107915 ( 25) TCCTTTGT 1 chrX:7969473-7969593 ( 8) TCCTTTGT 1 chr2R:24875760-24875880 ( 40) TCCTTTGT 1 chrX:18777103-18777223 ( 50) TCCTTTGT 1 chrX:11149874-11149994 ( 21) TCCTTTGT 1 chr2L:156028-156148 ( 46) TCCTTTGT 1 chrX:6803865-6803985 ( 68) TCCTTTGT 1 chrX:11819523-11819643 ( 33) TCCTTTGT 1 chr2L:20069340-20069460 ( 21) TCCTTTGT 1 chr3L:17973233-17973353 ( 97) CTCTTTGT 1 chr3R:16227325-16227445 ( 13) CTCTTTGT 1 chr3L:21343659-21343779 ( 4) CTCTTTGT 1 chr3L:1000831-1000951 ( 51) CTCTTTGT 1 chr2R:11648527-11648647 ( 57) CTCTTTGT 1 chr3L:9671503-9671623 ( 16) CTCTTTGT 1 chr3L:7328556-7328676 ( 44) CCCTTTGT 1 chrX:7967687-7967807 ( 60) CCCTTTGT 1 chr3L:22466500-22466620 ( 48) CCCTTTGT 1 chr2L:2038407-2038527 ( 73) CCCTTTGT 1 chr3R:5622244-5622364 ( 49) CCCTTTGT 1 chrX:21358521-21358641 ( 71) CCCTTTGT 1 chr2R:14569592-14569712 ( 59) TGCTTTGT 1 chr3L:12090260-12090380 ( 1) TGCTTTGT 1 chr3R:31608731-31608851 ( 6) GTCTTTGT 1 chr3R:25881930-25882050 ( 27) TGCTTTGT 1 chr3R:23993508-23993628 ( 16) GTCTTTGT 1 chr2R:14221050-14221170 ( 41) GTCTTTGT 1 chr3L:17530587-17530707 ( 54) GTCTTTGT 1 chr3L:18078708-18078828 ( 18) TTTTTTGT 1 chr2R:10430145-10430265 ( 85) TTTTTTGT 1 chr3L:19833437-19833557 ( 47) TTTTTTGT 1 chr2L:1901398-1901518 ( 38) TTTTTTGT 1 chr3R:24032030-24032150 ( 112) GCCTTTGT 1 chr3R:31611364-31611484 ( 113) GCCTTTGT 1 chr2R:9548185-9548305 ( 31) TCTTTTGT 1 chr2R:9714237-9714357 ( 23) CGCTTTGT 1 chr3R:4337771-4337891 ( 91) TCTTTTGT 1 chr3L:2632693-2632813 ( 61) CGCTTTGT 1 chr2L:7424377-7424497 ( 52) CTTTTTGT 1 chr2R:22925101-22925221 ( 46) CTTTTTGT 1 chr3L:16408654-16408774 ( 46) ATCTTTGT 1 chr3L:959337-959457 ( 67) ATCTTTGT 1 chr3R:27925183-27925303 ( 67) CCTTTTGT 1 chr3R:16290509-16290629 ( 69) CCTTTTGT 1 chr3R:24630157-24630277 ( 15) ACCTTTGT 1 chr3L:3901941-3902061 ( 42) ACCTTTGT 1 chr3L:20517531-20517651 ( 89) GGCTTTGT 1 chr3L:14984605-14984725 ( 79) GTTTTTGT 1 chr3L:1829670-1829790 ( 36) TGTTTTGT 1 chr3L:16038060-16038180 ( 88) TGTTTTGT 1 chr3R:23386272-23386392 ( 63) TGTTTTGT 1 chr3L:7368373-7368493 ( 4) GTTTTTGT 1 chr2R:23752662-23752782 ( 77) TTCTTTCT 1 chr3L:1496568-1496688 ( 34) TTCTTTCT 1 chr3L:14201140-14201260 ( 82) CTCTTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCTTTGT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2866 E= 1.1e-035 -252 12 -96 109 -1298 52 -96 103 -1298 192 -1298 -62 -1298 -1298 -1298 181 -1298 -1298 -1298 181 -1298 -1298 -1298 181 -1298 -254 216 -1298 -1298 -1298 -1298 181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCTTTGT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 81 E= 1.1e-035 0.049383 0.234568 0.111111 0.604938 0.000000 0.308642 0.111111 0.580247 0.000000 0.814815 0.000000 0.185185 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.037037 0.962963 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCTTTGT MEME-2 regular expression -------------------------------------------------------------------------------- [TC][TC]CTTTGT -------------------------------------------------------------------------------- Time 13.70 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCTCBC MEME-3 width = 8 sites = 22 llr = 203 E-value = 1.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCTCBC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 8aa9:a59 probability G ::::1:31 matrix T 2::19:3: bits 2.2 ** * 2.0 ** * 1.8 ** * 1.5 **** * * Relative 1.3 ****** * Entropy 1.1 ****** * (13.3 bits) 0.9 ****** * 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCTCCC consensus G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCTCBC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:15594402-15594522 105 6.23e-06 TCTGGAAGGG CCCCTCCC CTTCCACT chr3L:2568415-2568535 8 6.23e-06 GGTCTGG CCCCTCCC CCGCATTCCC chr2R:14221050-14221170 61 6.23e-06 CTTTGTTGGG CCCCTCCC CCCTGAACTT chr2R:18271189-18271309 42 1.25e-05 TAGCTTTAAA CCCCTCGC TTCAAATGCA chr3L:11124124-11124244 15 1.25e-05 TCCAGACACT CCCCTCGC CATCATGCTC chr2L:5295162-5295282 53 1.25e-05 TCCTTGTACA CCCCTCGC TGCTTCCTTT chrX:2658525-2658645 29 2.07e-05 TGAATCCGTG CCCCTCTC ATTGTTCTCT chr2R:19669007-19669127 101 2.07e-05 CTGCACCACC CCCCTCTC ACCAACGACA chr3L:20517531-20517651 53 2.07e-05 acaatcactc cccctctc tctctctctt chr2R:8143300-8143420 59 2.07e-05 CCGGCAACAT CCCCTCTC CCTCTccgac chr2R:9548185-9548305 111 2.88e-05 cctttctctg tccctccc tg chr3R:23993508-23993628 91 2.88e-05 TGCGGGCACC TCCCTCCC CTACTGACCG chr3R:10886451-10886571 45 3.51e-05 GGGCTTCCTC CCCCTCCG CTTCACCGCA chr3R:16290509-16290629 24 3.98e-05 TTCATACCGA CCCCGCCC CTTCGGCCGT chr3R:24046619-24046739 4 3.98e-05 CCG CCCCGCCC CCTTTTCGCA chr3R:21224467-21224587 11 4.80e-05 GTTTGTTGTG CCCTTCCC ACAGAGCAAT chr3L:17530587-17530707 97 4.80e-05 CTTCTGTACA CCCTTCCC CCTCTTGTTA chrX:7967687-7967807 93 5.62e-05 GTTCTCTCTC TCCCTCGC TCACCTACTC chr3L:3122757-3122877 63 6.24e-05 AAGGGTCTGC CCCCTCGG CTCGGTGGCT chrX:21368554-21368674 68 7.79e-05 GCGATCCTCT TCCCTCTC TTTCCATCCA chr3L:20432478-20432598 106 9.43e-05 ATATATTAAT CCCTTCGC AAATTAA chr3L:20518630-20518750 70 9.43e-05 tctttctCGC CCCCTCTG CGGagcaaga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCTCBC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:15594402-15594522 6.2e-06 104_[+3]_8 chr3L:2568415-2568535 6.2e-06 7_[+3]_105 chr2R:14221050-14221170 6.2e-06 60_[+3]_52 chr2R:18271189-18271309 1.2e-05 41_[+3]_71 chr3L:11124124-11124244 1.2e-05 14_[+3]_98 chr2L:5295162-5295282 1.2e-05 52_[+3]_60 chrX:2658525-2658645 2.1e-05 28_[+3]_84 chr2R:19669007-19669127 2.1e-05 100_[+3]_12 chr3L:20517531-20517651 2.1e-05 52_[+3]_60 chr2R:8143300-8143420 2.1e-05 58_[+3]_54 chr2R:9548185-9548305 2.9e-05 110_[+3]_2 chr3R:23993508-23993628 2.9e-05 90_[+3]_22 chr3R:10886451-10886571 3.5e-05 44_[+3]_68 chr3R:16290509-16290629 4e-05 23_[+3]_89 chr3R:24046619-24046739 4e-05 3_[+3]_109 chr3R:21224467-21224587 4.8e-05 10_[+3]_102 chr3L:17530587-17530707 4.8e-05 96_[+3]_16 chrX:7967687-7967807 5.6e-05 92_[+3]_20 chr3L:3122757-3122877 6.2e-05 62_[+3]_50 chrX:21368554-21368674 7.8e-05 67_[+3]_45 chr3L:20432478-20432598 9.4e-05 105_[+3]_7 chr3L:20518630-20518750 9.4e-05 69_[+3]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCTCBC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCTCBC width=8 seqs=22 chr3L:15594402-15594522 ( 105) CCCCTCCC 1 chr3L:2568415-2568535 ( 8) CCCCTCCC 1 chr2R:14221050-14221170 ( 61) CCCCTCCC 1 chr2R:18271189-18271309 ( 42) CCCCTCGC 1 chr3L:11124124-11124244 ( 15) CCCCTCGC 1 chr2L:5295162-5295282 ( 53) CCCCTCGC 1 chrX:2658525-2658645 ( 29) CCCCTCTC 1 chr2R:19669007-19669127 ( 101) CCCCTCTC 1 chr3L:20517531-20517651 ( 53) CCCCTCTC 1 chr2R:8143300-8143420 ( 59) CCCCTCTC 1 chr2R:9548185-9548305 ( 111) TCCCTCCC 1 chr3R:23993508-23993628 ( 91) TCCCTCCC 1 chr3R:10886451-10886571 ( 45) CCCCTCCG 1 chr3R:16290509-16290629 ( 24) CCCCGCCC 1 chr3R:24046619-24046739 ( 4) CCCCGCCC 1 chr3R:21224467-21224587 ( 11) CCCTTCCC 1 chr3L:17530587-17530707 ( 97) CCCTTCCC 1 chrX:7967687-7967807 ( 93) TCCCTCGC 1 chr3L:3122757-3122877 ( 63) CCCCTCGG 1 chrX:21368554-21368674 ( 68) TCCCTCTC 1 chr3L:20432478-20432598 ( 106) CCCTTCGC 1 chr3L:20518630-20518750 ( 70) CCCCTCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCTCBC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2007 E= 1.8e+003 -1110 192 -1110 -64 -1110 221 -1110 -1110 -1110 221 -1110 -1110 -1110 200 -1110 -106 -1110 -1110 -125 168 -1110 221 -1110 -1110 -1110 108 34 -6 -1110 200 -66 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCTCBC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.8e+003 0.000000 0.818182 0.000000 0.181818 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.863636 0.000000 0.136364 0.000000 0.000000 0.090909 0.909091 0.000000 1.000000 0.000000 0.000000 0.000000 0.454545 0.272727 0.272727 0.000000 0.863636 0.136364 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCTCBC MEME-3 regular expression -------------------------------------------------------------------------------- CCCCTC[CGT]C -------------------------------------------------------------------------------- Time 19.67 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGWSC MEME-4 width = 8 sites = 22 llr = 201 E-value = 4.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGWSC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::4:: pos.-specific C :::::159 probability G a:a:a15: matrix T :a:a:4:1 bits 2.2 * * * 2.0 * * * 1.8 ***** 1.5 ***** * Relative 1.3 ***** * Entropy 1.1 ***** ** (13.2 bits) 0.9 ***** ** 0.7 ***** ** 0.4 ***** ** 0.2 ******** 0.0 -------- Multilevel GTGTGTCC consensus AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGWSC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:15243658-15243778 75 2.15e-05 ATGCAtgtgt gtgtgtgc ttgtgagggc chr3R:4914454-4914574 30 2.15e-05 ATACCACCAA GTGTGTGC CATAAAGAAA chr2R:6102689-6102809 84 2.15e-05 ACTGCTGTGT GTGTGTGC GGAGAGCGGA chr2L:10220612-10220732 62 2.15e-05 GTGTGTATGT GTGTGTGC AATGAAGTCA chr3L:3901941-3902061 82 2.15e-05 CGTGTTGCGA GTGTGTGC ATGTATGTAT chr3R:31611364-31611484 36 2.15e-05 gtgtgtatgc gtgtgtgC AACACCCCCC chrX:6803865-6803985 52 2.15e-05 ctgagtgtgt gtgtgtgC AAAACTGCTC chr2R:18631793-18631913 86 4.31e-05 CAGCTAGCCA GTGTGACC AAGTTGCAGT chr2R:16027972-16028092 52 4.31e-05 TGGCTAGTCA GTGTGACC AGTTGAGAGT chrX:17518406-17518526 110 4.31e-05 ATATACGTAA GTGTGACC AGC chr4:1230673-1230793 28 4.31e-05 GAGAAGAACA GTGTGACC GTGTTAAAAC chr3L:1496568-1496688 50 4.31e-05 CTTCTCGCCA GTGTGACC AGATGCCGAA chr3L:21497452-21497572 30 4.31e-05 CTTGCGAGCA GTGTGACC GCAGTTGGGC chrX:13830224-13830344 73 4.31e-05 GTACAGTTAA GTGTGACC GCCGCGGGTT chr3R:24360124-24360244 1 4.31e-05 . GTGTGACC GCGGAATGGC chr3L:21343659-21343779 52 5.95e-05 TTTGTGGCAA GTGTGCCC GTTGGCTGGA chr3L:20430366-20430486 104 5.95e-05 ACTCAATGCA GTGTGCCC AACTGTTTT chr2R:11679296-11679416 28 7.58e-05 CCAAAAGTCA GTGTGGCC ACACCAAAAC chr3L:7328556-7328676 77 7.58e-05 GTTGTTGGCT GTGTGGGC TAGTTAGTTG chr3R:31608731-31608851 25 1.04e-04 TGCAGCTCGC GTGTGTGT ACGATGGCAA chr3L:1000831-1000951 67 1.04e-04 GTGCCCGTGA GTGTGTGT TTTGTGTAGA chrX:18777103-18777223 78 1.54e-04 GTTTGTGCTA GTGTGCGT GGCGAATGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGWSC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:15243658-15243778 2.2e-05 74_[+4]_38 chr3R:4914454-4914574 2.2e-05 29_[+4]_83 chr2R:6102689-6102809 2.2e-05 83_[+4]_29 chr2L:10220612-10220732 2.2e-05 61_[+4]_51 chr3L:3901941-3902061 2.2e-05 81_[+4]_31 chr3R:31611364-31611484 2.2e-05 35_[+4]_77 chrX:6803865-6803985 2.2e-05 51_[+4]_61 chr2R:18631793-18631913 4.3e-05 85_[+4]_27 chr2R:16027972-16028092 4.3e-05 51_[+4]_61 chrX:17518406-17518526 4.3e-05 109_[+4]_3 chr4:1230673-1230793 4.3e-05 27_[+4]_85 chr3L:1496568-1496688 4.3e-05 49_[+4]_63 chr3L:21497452-21497572 4.3e-05 29_[+4]_83 chrX:13830224-13830344 4.3e-05 72_[+4]_40 chr3R:24360124-24360244 4.3e-05 [+4]_112 chr3L:21343659-21343779 5.9e-05 51_[+4]_61 chr3L:20430366-20430486 5.9e-05 103_[+4]_9 chr2R:11679296-11679416 7.6e-05 27_[+4]_85 chr3L:7328556-7328676 7.6e-05 76_[+4]_36 chr3R:31608731-31608851 0.0001 24_[+4]_88 chr3L:1000831-1000951 0.0001 66_[+4]_46 chrX:18777103-18777223 0.00015 77_[+4]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGWSC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGWSC width=8 seqs=22 chr3R:15243658-15243778 ( 75) GTGTGTGC 1 chr3R:4914454-4914574 ( 30) GTGTGTGC 1 chr2R:6102689-6102809 ( 84) GTGTGTGC 1 chr2L:10220612-10220732 ( 62) GTGTGTGC 1 chr3L:3901941-3902061 ( 82) GTGTGTGC 1 chr3R:31611364-31611484 ( 36) GTGTGTGC 1 chrX:6803865-6803985 ( 52) GTGTGTGC 1 chr2R:18631793-18631913 ( 86) GTGTGACC 1 chr2R:16027972-16028092 ( 52) GTGTGACC 1 chrX:17518406-17518526 ( 110) GTGTGACC 1 chr4:1230673-1230793 ( 28) GTGTGACC 1 chr3L:1496568-1496688 ( 50) GTGTGACC 1 chr3L:21497452-21497572 ( 30) GTGTGACC 1 chrX:13830224-13830344 ( 73) GTGTGACC 1 chr3R:24360124-24360244 ( 1) GTGTGACC 1 chr3L:21343659-21343779 ( 52) GTGTGCCC 1 chr3L:20430366-20430486 ( 104) GTGTGCCC 1 chr2R:11679296-11679416 ( 28) GTGTGGCC 1 chr3L:7328556-7328676 ( 77) GTGTGGGC 1 chr3R:31608731-31608851 ( 25) GTGTGTGT 1 chr3L:1000831-1000951 ( 67) GTGTGTGT 1 chrX:18777103-18777223 ( 78) GTGTGCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGWSC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6807 E= 4.7e+003 -1110 -1110 221 -1110 -1110 -1110 -1110 181 -1110 -1110 221 -1110 -1110 -1110 -1110 181 -1110 -1110 221 -1110 35 -66 -125 53 -1110 121 121 -1110 -1110 200 -1110 -106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGWSC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 4.7e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.363636 0.136364 0.090909 0.409091 0.000000 0.500000 0.500000 0.000000 0.000000 0.863636 0.000000 0.136364 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGWSC MEME-4 regular expression -------------------------------------------------------------------------------- GTGTG[TA][CG]C -------------------------------------------------------------------------------- Time 25.60 secs. ******************************************************************************** ******************************************************************************** MOTIF GKGGGGCG MEME-5 width = 8 sites = 18 llr = 172 E-value = 4.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GKGGGGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 2::::::: pos.-specific C :1:2::9: probability G 86a7aa:a matrix T :3:1::1: bits 2.2 * ** * 2.0 * **** 1.8 * **** 1.5 * **** Relative 1.3 * * **** Entropy 1.1 * * **** (13.8 bits) 0.9 * ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGGCG consensus AT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGGGGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:11641962-11642082 59 4.74e-06 AATGGTTAAG GGGGGGCG TTCGTCACGA chr3R:16227325-16227445 87 4.74e-06 GATGATGAAA GGGGGGCG GTGGGTGGTG chrX:10734886-10735006 7 4.74e-06 AAAAGG GGGGGGCG TGGCAGTGCT chr3R:22636519-22636639 71 1.10e-05 GAGGAGCAGT GTGGGGCG ATAAGCTCCG chr3L:12258777-12258897 80 1.10e-05 TTTGGGGCCA GTGGGGCG GAGGGTCATC chr3L:146306-146426 107 1.10e-05 GTCACACTAA GTGGGGCG CCAAGA chr2R:13589286-13589406 76 1.10e-05 GGGGGGTAGA GTGGGGCG TAAGTTCAAG chr2R:6102689-6102809 14 1.57e-05 CTGCCACTGC GGGCGGCG CAGTCGTCCT chr2L:107795-107915 112 1.57e-05 TGGCAACGCT GGGCGGCG G chrX:10472810-10472930 82 2.67e-05 TAATTGCGGC AGGGGGCG TGAAGGGGCG chr2R:11648527-11648647 86 2.67e-05 AAATGCAACG AGGGGGCG GGGCAATGCA chr2R:7962575-7962695 101 2.67e-05 TTCTTTGTTT GCGGGGCG CCGCCATTTT chrX:11684620-11684740 93 3.91e-05 GCGGAGAATT GGGTGGCG CAGTGACAAA chr2R:18806093-18806213 104 4.73e-05 gagagagaga ATGGGGCG CCGCGCTGT chr3L:2632693-2632813 8 5.83e-05 AAAGCGG GCGCGGCG ATAAAGCAGC chrX:10209737-10209857 49 5.83e-05 CACGAAGGAG AGGCGGCG GGAGCAGgag chr3L:2772188-2772308 26 6.65e-05 GACGTTGTTT GTGTGGCG ACCAAGTGGG chr3R:23729900-23730020 103 7.89e-05 ATGATTCCAA GGGGGGTG GGGGTTATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGGGGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:11641962-11642082 4.7e-06 58_[+5]_54 chr3R:16227325-16227445 4.7e-06 86_[+5]_26 chrX:10734886-10735006 4.7e-06 6_[+5]_106 chr3R:22636519-22636639 1.1e-05 70_[+5]_42 chr3L:12258777-12258897 1.1e-05 79_[+5]_33 chr3L:146306-146426 1.1e-05 106_[+5]_6 chr2R:13589286-13589406 1.1e-05 75_[+5]_37 chr2R:6102689-6102809 1.6e-05 13_[+5]_99 chr2L:107795-107915 1.6e-05 111_[+5]_1 chrX:10472810-10472930 2.7e-05 81_[+5]_31 chr2R:11648527-11648647 2.7e-05 85_[+5]_27 chr2R:7962575-7962695 2.7e-05 100_[+5]_12 chrX:11684620-11684740 3.9e-05 92_[+5]_20 chr2R:18806093-18806213 4.7e-05 103_[+5]_9 chr3L:2632693-2632813 5.8e-05 7_[+5]_105 chrX:10209737-10209857 5.8e-05 48_[+5]_64 chr3L:2772188-2772308 6.6e-05 25_[+5]_87 chr3R:23729900-23730020 7.9e-05 102_[+5]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGGGGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GKGGGGCG width=8 seqs=18 chr2R:11641962-11642082 ( 59) GGGGGGCG 1 chr3R:16227325-16227445 ( 87) GGGGGGCG 1 chrX:10734886-10735006 ( 7) GGGGGGCG 1 chr3R:22636519-22636639 ( 71) GTGGGGCG 1 chr3L:12258777-12258897 ( 80) GTGGGGCG 1 chr3L:146306-146426 ( 107) GTGGGGCG 1 chr2R:13589286-13589406 ( 76) GTGGGGCG 1 chr2R:6102689-6102809 ( 14) GGGCGGCG 1 chr2L:107795-107915 ( 112) GGGCGGCG 1 chrX:10472810-10472930 ( 82) AGGGGGCG 1 chr2R:11648527-11648647 ( 86) AGGGGGCG 1 chr2R:7962575-7962695 ( 101) GCGGGGCG 1 chrX:11684620-11684740 ( 93) GGGTGGCG 1 chr2R:18806093-18806213 ( 104) ATGGGGCG 1 chr3L:2632693-2632813 ( 8) GCGCGGCG 1 chrX:10209737-10209857 ( 49) AGGCGGCG 1 chr3L:2772188-2772308 ( 26) GTGTGGCG 1 chr3R:23729900-23730020 ( 103) GGGGGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGGGGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 4.2e+004 -36 -1081 185 -1081 -1081 -96 136 23 -1081 -1081 221 -1081 -1081 4 163 -135 -1081 -1081 221 -1081 -1081 -1081 221 -1081 -1081 213 -1081 -235 -1081 -1081 221 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGGGGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 4.2e+004 0.222222 0.000000 0.777778 0.000000 0.000000 0.111111 0.555556 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.222222 0.666667 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.944444 0.000000 0.055556 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGGGGCG MEME-5 regular expression -------------------------------------------------------------------------------- [GA][GT]G[GC]GGCG -------------------------------------------------------------------------------- Time 31.85 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10209737-10209857 1.56e-03 27_[+1(2.45e-05)]_13_[+5(5.83e-05)]_\ 64 chr2R:11650993-11651113 6.18e-02 120 chr2R:12917350-12917470 3.86e-02 96_[+1(2.45e-05)]_7_[+1(2.45e-05)]_\ 1 chr2R:17581474-17581594 2.58e-02 27_[+1(2.45e-05)]_85 chr2L:20069340-20069460 7.83e-02 20_[+2(4.31e-05)]_92 chr2L:9493995-9494115 2.88e-02 38_[+1(8.03e-05)]_74 chr2L:18689607-18689727 4.33e-02 44_[+1(2.45e-05)]_68 chr3L:3122757-3122877 2.17e-02 62_[+3(6.24e-05)]_50 chr2R:13589286-13589406 2.02e-03 35_[+1(8.03e-05)]_32_[+5(1.10e-05)]_\ 37 chr3R:24046619-24046739 2.35e-03 3_[+3(3.98e-05)]_17_[+1(2.45e-05)]_\ 84 chr2R:14543542-14543662 9.24e-02 67_[+2(2.45e-05)]_45 chr3L:3376682-3376802 1.35e-01 89_[+1(2.45e-05)]_23 chr2R:23718191-23718311 2.10e-01 40_[+1(2.45e-05)]_72 chr3R:23729900-23730020 2.40e-04 23_[+2(2.45e-05)]_32_[+1(8.03e-05)]_\ 31_[+5(7.89e-05)]_10 chr2R:9839505-9839625 5.56e-02 15_[+1(6.17e-05)]_97 chr3L:8968458-8968578 9.30e-02 53_[+1(4.31e-05)]_59 chr3L:883949-884069 1.73e-02 74_[+2(2.45e-05)]_38 chr3L:17530587-17530707 6.41e-03 96_[+3(4.80e-05)]_16 chr2L:1989645-1989765 4.88e-02 84_[+1(2.45e-05)]_28 chr2L:5295162-5295282 2.03e-03 52_[+3(1.25e-05)]_12_[+2(6.17e-05)]_\ 19_[+2(2.45e-05)]_13 chr3R:11679680-11679800 4.63e-02 103_[+1(2.45e-05)]_9 chrX:21358521-21358641 2.03e-02 70_[+2(7.59e-05)]_42 chrX:10734886-10735006 1.91e-03 6_[+5(4.74e-06)]_51_[+1(2.45e-05)]_\ 7_[+1(6.17e-05)]_13_[+5(7.89e-05)]_11 chr3R:24016087-24016207 1.94e-01 78_[+2(2.45e-05)]_34 chr3L:9358888-9359008 7.32e-01 120 chrX:11819523-11819643 3.80e-02 32_[+2(4.31e-05)]_80 chr2R:8143300-8143420 8.36e-03 58_[+3(2.07e-05)]_54 chr3R:29993303-29993423 1.85e-02 39_[+2(2.45e-05)]_73 chr3L:9671503-9671623 1.04e-02 15_[+2(6.17e-05)]_97 chr3L:11124124-11124244 7.68e-04 14_[+3(1.25e-05)]_55_[+1(2.45e-05)]_\ 35 chr3R:28811995-28812115 2.14e-01 60_[+1(2.45e-05)]_52 chr3L:9678374-9678494 1.15e-01 120 chr3L:19092831-19092951 1.68e-01 120 chr3R:16290509-16290629 2.88e-02 23_[+3(3.98e-05)]_89 chr2R:7962575-7962695 5.06e-04 90_[+2(2.45e-05)]_2_[+5(2.67e-05)]_\ 12 chrX:6803865-6803985 1.43e-04 51_[+4(2.15e-05)]_8_[+2(4.31e-05)]_\ 45 chr2R:14221050-14221170 2.22e-05 60_[+3(6.23e-06)]_11_[+1(2.45e-05)]_\ 33 chr3R:5622244-5622364 7.00e-02 48_[+2(7.59e-05)]_64 chr2L:128479-128599 9.45e-02 53_[+1(2.45e-05)]_59 chr3L:16639161-16639281 6.96e-02 72_[+2(2.45e-05)]_40 chr3R:24360124-24360244 2.08e-02 [+4(4.31e-05)]_112 chrX:15569119-15569239 7.54e-01 120 chrX:1827688-1827808 2.43e-02 65_[+1(2.45e-05)]_47 chr3L:20349345-20349465 5.87e-02 120 chr2R:11648527-11648647 2.06e-04 56_[+2(6.17e-05)]_21_[+5(2.67e-05)]_\ 27 chr3L:20517531-20517651 1.34e-03 4_[+3(7.79e-05)]_40_[+3(2.07e-05)]_\ 60 chr2L:5294548-5294668 2.71e-01 28_[+1(8.03e-05)]_84 chr2R:24294671-24294791 3.29e-02 24_[+1(2.45e-05)]_88 chr3L:20430366-20430486 3.55e-04 8_[+2(2.45e-05)]_87_[+4(5.95e-05)]_\ 9 chr3L:2632693-2632813 9.84e-04 7_[+5(5.83e-05)]_105 chr3L:1000831-1000951 1.30e-02 50_[+2(6.17e-05)]_62 chr2L:156028-156148 2.88e-01 45_[+2(4.31e-05)]_67 chr2R:22103103-22103223 7.45e-02 36_[+2(2.45e-05)]_76 chr3L:21343659-21343779 9.22e-04 3_[+2(6.17e-05)]_40_[+4(5.95e-05)]_\ 22_[+1(9.90e-05)]_31 chr3L:9410188-9410308 5.62e-01 120 chr2R:9284285-9284405 1.64e-02 35_[+1(2.45e-05)]_77 chrX:10741819-10741939 2.18e-01 19_[+1(2.45e-05)]_93 chrX:11149874-11149994 3.34e-02 20_[+2(4.31e-05)]_92 chr2L:2364271-2364391 8.28e-01 120 chr3R:31611364-31611484 3.08e-04 35_[+4(2.15e-05)]_77 chr3L:3901941-3902061 3.01e-04 22_[+1(6.17e-05)]_51_[+4(2.15e-05)]_\ 31 chr3R:30772919-30773039 5.30e-04 43_[+1(4.31e-05)]_69 chr3R:16227325-16227445 7.36e-04 12_[+2(6.17e-05)]_66_[+5(4.74e-06)]_\ 26 chr2R:7150417-7150537 2.16e-02 21_[+1(2.45e-05)]_28_[+1(6.17e-05)]_\ 55 chr2L:22134163-22134283 2.09e-02 43_[+2(2.45e-05)]_69 chr3L:20518630-20518750 3.89e-03 6_[+2(2.45e-05)]_27_[+2(2.45e-05)]_\ 20_[+3(9.43e-05)]_43 chr2L:1901398-1901518 3.41e-03 120 chrX:476517-476637 4.20e-03 4_[+2(2.45e-05)]_108 chr3R:11615859-11615979 1.30e-01 17_[+1(6.17e-05)]_23_[+1(9.90e-05)]_\ 64 chrX:13830224-13830344 2.16e-03 26_[+2(2.45e-05)]_38_[+4(4.31e-05)]_\ 40 chr2L:7701481-7701601 8.55e-02 33_[+2(2.45e-05)]_79 chr3L:146306-146426 4.30e-02 106_[+5(1.10e-05)]_6 chrX:18777103-18777223 1.11e-04 49_[+2(4.31e-05)]_63 chr2L:10220612-10220732 4.72e-02 61_[+4(2.15e-05)]_51 chr2R:24875760-24875880 2.37e-02 39_[+2(4.31e-05)]_73 chr2L:7418471-7418591 3.88e-01 120 chr3R:13011129-13011249 6.30e-01 120 chr2R:18806093-18806213 3.10e-03 77_[+1(9.90e-05)]_18_[+5(4.73e-05)]_\ 9 chrX:16800055-16800175 4.87e-02 50_[+1(2.45e-05)]_62 chr3R:5618345-5618465 8.85e-01 120 chrX:21368554-21368674 8.56e-03 67_[+3(7.79e-05)]_28_[+1(6.17e-05)]_\ 9 chr2L:7199895-7200015 2.70e-02 65_[+2(2.45e-05)]_47 chrX:7969473-7969593 7.80e-02 7_[+2(4.31e-05)]_105 chr2L:107795-107915 5.83e-04 24_[+2(4.31e-05)]_79_[+5(1.57e-05)]_\ 1 chr2R:6102689-6102809 2.18e-04 13_[+5(1.57e-05)]_62_[+4(2.15e-05)]_\ 29 chr3R:8561641-8561761 2.97e-02 64_[+1(2.45e-05)]_48 chr2R:15613878-15613998 1.08e-02 107_[+1(2.45e-05)]_5 chr2R:24986590-24986710 2.34e-02 11_[+1(2.45e-05)]_101 chr2L:8424183-8424303 2.31e-02 93_[+2(4.31e-05)]_19 chr3L:17973233-17973353 3.00e-02 45_[+2(6.17e-05)]_43_[+2(6.17e-05)]_\ 16 chrX:18499873-18499993 1.43e-02 120 chr3L:7368373-7368493 3.93e-03 40_[+1(6.17e-05)]_72 chr2R:23843266-23843386 1.48e-01 104_[+1(2.45e-05)]_8 chr3R:23386272-23386392 1.23e-01 120 chr2R:24783528-24783648 4.63e-01 120 chr3L:21497452-21497572 1.18e-02 29_[+4(4.31e-05)]_83 chr3L:8304123-8304243 8.62e-01 120 chr3R:13767412-13767532 8.59e-02 43_[+1(6.17e-05)]_69 chr2R:7694384-7694504 3.63e-01 120 chr3R:28696134-28696254 8.42e-01 120 chr3L:1496568-1496688 1.86e-02 49_[+4(4.31e-05)]_63 chr2L:2038407-2038527 2.37e-01 72_[+2(7.59e-05)]_40 chr3L:5779860-5779980 6.63e-01 120 chr2L:8093298-8093418 2.25e-01 120 chrX:1466242-1466362 2.23e-01 120 chr3R:8040994-8041114 8.03e-01 120 chr3L:2568415-2568535 1.00e-03 7_[+3(6.23e-06)]_105 chr3R:23993237-23993357 1.67e-01 45_[+1(2.45e-05)]_67 chr2R:11704600-11704720 8.08e-01 120 chr2R:24807851-24807971 7.63e-01 120 chrX:9251282-9251402 1.58e-02 31_[+2(2.45e-05)]_81 chr3L:3037062-3037182 9.56e-01 120 chr2R:10429946-10430066 1.01e-03 17_[+4(2.15e-05)]_23_[+4(4.31e-05)]_\ 50_[+1(2.45e-05)]_6 chr3L:12258777-12258897 1.05e-02 51_[+1(9.90e-05)]_20_[+5(1.10e-05)]_\ 33 chr3L:12040436-12040556 3.21e-02 60_[+1(8.03e-05)]_52 chr4:1230673-1230793 5.85e-03 11_[+1(2.45e-05)]_8_[+4(4.31e-05)]_\ 85 chr2R:12981069-12981189 4.06e-03 42_[+2(2.45e-05)]_48_[+1(6.17e-05)]_\ 14 chr3R:10886451-10886571 2.37e-03 9_[+1(4.31e-05)]_27_[+3(3.51e-05)]_\ 68 chr2R:11641962-11642082 2.60e-04 58_[+5(4.74e-06)]_12_[+2(2.45e-05)]_\ 34 chr2L:4028156-4028276 7.13e-01 120 chr2R:10772035-10772155 8.40e-01 120 chr3L:17557204-17557324 7.23e-03 47_[+2(2.45e-05)]_65 chrX:19193497-19193617 3.16e-01 120 chr2L:4648933-4649053 9.75e-01 120 chr2R:16386857-16386977 1.78e-01 120 chr3R:23993508-23993628 1.21e-02 90_[+3(2.88e-05)]_22 chr3R:25881930-25882050 1.09e-01 120 chrX:6745666-6745786 4.58e-01 120 chr3L:16927470-16927590 8.35e-02 34_[+1(2.45e-05)]_78 chr3R:4810084-4810204 5.45e-01 120 chr3R:4914454-4914574 4.81e-03 29_[+4(2.15e-05)]_29_[+1(2.45e-05)]_\ 46 chr2L:11399609-11399729 5.22e-01 120 chr3L:19833437-19833557 2.79e-02 120 chr3L:16377961-16378081 7.89e-01 120 chr3L:15594402-15594522 3.34e-02 104_[+3(6.23e-06)]_8 chrX:17518406-17518526 2.34e-01 109_[+4(4.31e-05)]_3 chr2R:17048801-17048921 5.79e-01 120 chr2R:9284487-9284607 7.22e-02 120 chr3L:22466500-22466620 7.19e-02 47_[+2(7.59e-05)]_65 chr3L:16038060-16038180 3.11e-02 75_[+1(2.45e-05)]_37 chr3R:22636519-22636639 7.18e-03 70_[+5(1.10e-05)]_42 chr2R:16027972-16028092 1.72e-02 27_[+1(9.90e-05)]_16_[+4(4.31e-05)]_\ 61 chr2R:8024472-8024592 6.11e-02 59_[+1(6.17e-05)]_53 chr3R:27925183-27925303 4.93e-03 95_[+1(6.17e-05)]_17 chrX:7967687-7967807 3.93e-03 59_[+2(7.59e-05)]_25_[+3(5.62e-05)]_\ 20 chr2L:2873523-2873643 6.39e-02 97_[+2(2.45e-05)]_15 chrX:10209938-10210058 2.76e-01 120 chr2L:14624019-14624139 4.96e-01 120 chr3R:21224467-21224587 3.55e-02 10_[+3(4.80e-05)]_102 chr3R:4337771-4337891 1.54e-02 104_[+1(2.45e-05)]_8 chr3R:31608731-31608851 1.48e-04 82_[+1(6.17e-05)]_30 chr3R:14024323-14024443 2.03e-02 46_[+1(2.45e-05)]_66 chr2R:12535213-12535333 6.82e-01 120 chr2R:10430145-10430265 1.25e-01 120 chr3R:25461795-25461915 8.42e-01 120 chr3R:27140122-27140242 1.14e-01 120 chr3R:18481157-18481277 7.18e-01 120 chr2R:19669007-19669127 1.01e-03 64_[+1(2.45e-05)]_28_[+3(2.07e-05)]_\ 12 chr2R:7727503-7727623 4.52e-01 120 chr3L:7328556-7328676 1.88e-02 43_[+2(7.59e-05)]_25_[+4(7.58e-05)]_\ 36 chr2R:18271189-18271309 1.22e-02 41_[+3(1.25e-05)]_71 chr2L:10276991-10277111 6.89e-02 86_[+1(2.45e-05)]_26 chrX:2270091-2270211 2.19e-01 35_[+1(8.03e-05)]_77 chr3L:18672396-18672516 4.02e-01 120 chr3R:25097586-25097706 2.61e-02 89_[+2(2.45e-05)]_23 chr3R:26540578-26540698 7.91e-01 120 chr2R:23752662-23752782 1.60e-01 120 chrX:5988228-5988348 6.70e-02 41_[+1(2.45e-05)]_71 chr3R:24234009-24234129 2.83e-02 57_[+1(8.03e-05)]_55 chr2R:10530588-10530708 2.70e-02 35_[+2(2.45e-05)]_77 chr3R:16119609-16119729 4.22e-01 120 chr2L:7897391-7897511 7.94e-01 120 chr3L:1829670-1829790 5.84e-01 120 chr3L:20432478-20432598 8.42e-02 105_[+3(9.43e-05)]_7 chr3R:8349926-8350046 7.77e-02 120 chr3L:14201140-14201260 1.12e-01 120 chr3R:22357123-22357243 1.87e-01 111_[+1(8.03e-05)]_1 chr2L:357853-357973 3.66e-01 20_[+1(4.31e-05)]_92 chr3L:787780-787900 6.45e-02 120 chrX:11684620-11684740 9.03e-03 4_[+1(4.31e-05)]_80_[+5(3.91e-05)]_\ 20 chr3R:10049133-10049253 4.87e-02 80_[+2(4.31e-05)]_32 chrX:2455524-2455644 8.49e-01 120 chr3L:1031070-1031190 1.53e-01 120 chr3L:12090260-12090380 2.83e-01 120 chrX:2658525-2658645 1.47e-02 28_[+3(2.07e-05)]_84 chrX:20391364-20391484 2.01e-01 120 chr2R:22925101-22925221 4.89e-02 120 chr3L:18078708-18078828 1.39e-01 120 chr3R:24032030-24032150 4.13e-01 120 chr2R:18631793-18631913 1.83e-01 85_[+4(4.31e-05)]_8_[+4(5.95e-05)]_\ 11 chr3R:24261744-24261864 9.92e-01 120 chr3R:11974723-11974843 6.48e-01 120 chrX:6339156-6339276 1.79e-01 120 chr2L:7424377-7424497 2.44e-02 120 chr3R:24630157-24630277 7.27e-02 120 chr3R:17670841-17670961 3.25e-01 120 chr2R:17811073-17811193 4.06e-01 120 chr3L:10387400-10387520 9.61e-01 120 chr2R:23567394-23567514 6.01e-01 120 chr2R:14569592-14569712 2.79e-01 120 chr3L:2772188-2772308 3.41e-02 25_[+5(6.65e-05)]_87 chr2L:19905328-19905448 9.85e-01 120 chr2L:11280207-11280327 5.81e-01 120 chr3L:9968399-9968519 9.63e-01 120 chr2L:871518-871638 5.82e-02 45_[+1(2.45e-05)]_67 chr2R:17469166-17469286 6.76e-01 120 chrX:9089400-9089520 4.70e-01 120 chr2R:11679296-11679416 5.96e-02 27_[+4(7.58e-05)]_85 chr3R:5281298-5281418 1.20e-01 3_[+1(2.45e-05)]_109 chrX:10472810-10472930 4.82e-02 81_[+5(2.67e-05)]_31 chr3R:15243658-15243778 3.49e-02 74_[+4(2.15e-05)]_38 chr2L:609642-609762 5.71e-01 120 chr3R:13845977-13846097 6.04e-01 120 chr3L:11681942-11682062 5.71e-02 106_[+1(9.90e-05)]_6 chr3R:24996630-24996750 3.51e-01 120 chr3L:6458079-6458199 2.36e-01 120 chr2R:9714237-9714357 2.28e-01 120 chr2L:20675989-20676109 4.33e-02 61_[+1(2.45e-05)]_51 chr3L:21894875-21894995 4.86e-01 120 chr3L:959337-959457 9.53e-02 120 chr3R:9230372-9230492 4.29e-01 120 chr2R:23977297-23977417 9.88e-01 120 chr3L:4707975-4708095 9.38e-01 120 chr2R:22080184-22080304 7.16e-02 14_[+1(6.17e-05)]_98 chr3R:15566466-15566586 9.44e-01 120 chrX:1826326-1826446 7.78e-01 120 chr2R:8322761-8322881 9.96e-01 120 chr3R:23201177-23201297 2.00e-01 120 chr2R:12012816-12012936 8.12e-01 120 chr2R:24955772-24955892 4.14e-02 120 chr3L:16408654-16408774 4.08e-01 120 chr3L:3513203-3513323 9.93e-01 120 chr3R:29027173-29027293 1.21e-01 120 chr2R:11324003-11324123 8.68e-01 120 chr3R:5331929-5332049 1.78e-01 120 chr3L:14984605-14984725 2.85e-01 120 chr3R:31700356-31700476 6.06e-01 120 chr2L:3303540-3303660 4.85e-01 120 chr3L:20552009-20552129 6.18e-01 120 chr2L:9158456-9158576 6.39e-02 120 chrX:3289477-3289597 3.95e-01 120 chrX:9658144-9658264 2.42e-01 120 chr2L:7974017-7974137 8.75e-01 120 chrX:13257227-13257347 5.12e-01 120 chr2L:1427934-1428054 4.21e-01 120 chr2R:9548185-9548305 1.66e-02 110_[+3(2.88e-05)]_2 chr3R:29778223-29778343 7.81e-01 120 chr3L:14055392-14055512 9.97e-01 120 chr3L:19899490-19899610 5.44e-03 55_[+2(2.45e-05)]_57 chrX:2452914-2453034 3.19e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************