******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Sox102F.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:27593315-27593435 1.0000 120 chr3R:31297118-31297238 1.0000 120 chrX:3055928-3056048 1.0000 120 chr2L:5231641-5231761 1.0000 120 chr2L:8672354-8672474 1.0000 120 chr2R:18610452-18610572 1.0000 120 chr2R:14467085-14467205 1.0000 120 chr2R:10580601-10580721 1.0000 120 chr2R:12014519-12014639 1.0000 120 chr3L:10359560-10359680 1.0000 120 chrX:173674-173794 1.0000 120 chr3L:8763887-8764007 1.0000 120 chr3L:17975468-17975588 1.0000 120 chr2R:15513545-15513665 1.0000 120 chrX:1574447-1574567 1.0000 120 chr3L:8819282-8819402 1.0000 120 chr3R:31424554-31424674 1.0000 120 chr3R:8272723-8272843 1.0000 120 chr2R:22144361-22144481 1.0000 120 chr2L:4588968-4589088 1.0000 120 chr2L:13999057-13999177 1.0000 120 chr3L:22157771-22157891 1.0000 120 chr2L:11870912-11871032 1.0000 120 chr2R:7909603-7909723 1.0000 120 chr2L:1486389-1486509 1.0000 120 chrX:20509639-20509759 1.0000 120 chr3R:8968968-8969088 1.0000 120 chr3R:21827615-21827735 1.0000 120 chr2L:700933-701053 1.0000 120 chr3L:6471948-6472068 1.0000 120 chr2L:7334349-7334469 1.0000 120 chr3R:11980046-11980166 1.0000 120 chr2L:650996-651116 1.0000 120 chrX:14750625-14750745 1.0000 120 chr3L:18198925-18199045 1.0000 120 chr2L:4567365-4567485 1.0000 120 chr2R:19913860-19913980 1.0000 120 chr2R:7013115-7013235 1.0000 120 chr2R:21899236-21899356 1.0000 120 chr3L:3649718-3649838 1.0000 120 chr2L:16842608-16842728 1.0000 120 chr3L:14456054-14456174 1.0000 120 chrX:10893341-10893461 1.0000 120 chr3R:24603727-24603847 1.0000 120 chrX:19149268-19149388 1.0000 120 chr2L:633292-633412 1.0000 120 chr2R:10772060-10772180 1.0000 120 chr2R:19618121-19618241 1.0000 120 chr2L:1887882-1888002 1.0000 120 chr2R:16818836-16818956 1.0000 120 chr3L:8371023-8371143 1.0000 120 chr3R:31308976-31309096 1.0000 120 chr2L:658125-658245 1.0000 120 chr3L:5867021-5867141 1.0000 120 chr2L:8585207-8585327 1.0000 120 chr3R:16985672-16985792 1.0000 120 chr3L:5637627-5637747 1.0000 120 chrX:6457999-6458119 1.0000 120 chr3L:14453339-14453459 1.0000 120 chr3R:8116072-8116192 1.0000 120 chr3R:10527610-10527730 1.0000 120 chr3R:8282874-8282994 1.0000 120 chr2L:20880653-20880773 1.0000 120 chr2L:16843422-16843542 1.0000 120 chr3R:25461803-25461923 1.0000 120 chr2L:15459021-15459141 1.0000 120 chrX:6021589-6021709 1.0000 120 chrX:8667847-8667967 1.0000 120 chr2L:11328505-11328625 1.0000 120 chr3R:22424143-22424263 1.0000 120 chr3L:20747682-20747802 1.0000 120 chrX:13764837-13764957 1.0000 120 chr3L:15005213-15005333 1.0000 120 chr3R:14722696-14722816 1.0000 120 chr3L:6771350-6771470 1.0000 120 chr3L:3695480-3695600 1.0000 120 chr3R:4961572-4961692 1.0000 120 chr2R:7473825-7473945 1.0000 120 chr3L:2837623-2837743 1.0000 120 chrX:17814956-17815076 1.0000 120 chr2R:18312557-18312677 1.0000 120 chr3L:8716169-8716289 1.0000 120 chr3R:30171405-30171525 1.0000 120 chr3R:22205648-22205768 1.0000 120 chr2R:15483735-15483855 1.0000 120 chr3R:21704622-21704742 1.0000 120 chr2L:634234-634354 1.0000 120 chr2R:15842598-15842718 1.0000 120 chr2L:15275907-15276027 1.0000 120 chrX:9892976-9893096 1.0000 120 chr3L:12097344-12097464 1.0000 120 chr2R:23022655-23022775 1.0000 120 chrX:17551154-17551274 1.0000 120 chr3L:15258520-15258640 1.0000 120 chr3L:727294-727414 1.0000 120 chr2L:11395811-11395931 1.0000 120 chr3L:804644-804764 1.0000 120 chr3R:16501511-16501631 1.0000 120 chrX:5608646-5608766 1.0000 120 chr2L:9438378-9438498 1.0000 120 chr2R:7531246-7531366 1.0000 120 chr2L:18517203-18517323 1.0000 120 chr2L:16536620-16536740 1.0000 120 chr3L:729501-729621 1.0000 120 chr2R:7040082-7040202 1.0000 120 chr2R:19187328-19187448 1.0000 120 chr2L:3554059-3554179 1.0000 120 chrX:13568293-13568413 1.0000 120 chrX:13394489-13394609 1.0000 120 chr3L:758660-758780 1.0000 120 chr2R:23225169-23225289 1.0000 120 chr3R:31680023-31680143 1.0000 120 chr3R:19064170-19064290 1.0000 120 chrX:13541393-13541513 1.0000 120 chr2L:14226819-14226939 1.0000 120 chrX:5026814-5026934 1.0000 120 chrX:5025462-5025582 1.0000 120 chr3R:19603119-19603239 1.0000 120 chr3R:13934758-13934878 1.0000 120 chr3L:1320591-1320711 1.0000 120 chrX:17545678-17545798 1.0000 120 chr2L:17782078-17782198 1.0000 120 chrX:3841021-3841141 1.0000 120 chrX:17172306-17172426 1.0000 120 chr3R:15566481-15566601 1.0000 120 chr3R:29165033-29165153 1.0000 120 chr3L:21594551-21594671 1.0000 120 chr3R:8029739-8029859 1.0000 120 chr3R:13793423-13793543 1.0000 120 chr3R:13941552-13941672 1.0000 120 chr2R:21470539-21470659 1.0000 120 chr3R:30056101-30056221 1.0000 120 chrX:4322791-4322911 1.0000 120 chrX:6022262-6022382 1.0000 120 chrX:6574635-6574755 1.0000 120 chr3L:1458142-1458262 1.0000 120 chr2L:3341724-3341844 1.0000 120 chr3R:21823246-21823366 1.0000 120 chr4:695939-696059 1.0000 120 chr2R:24685035-24685155 1.0000 120 chr2L:5429249-5429369 1.0000 120 chr3L:14239407-14239527 1.0000 120 chr3L:2152909-2153029 1.0000 120 chrX:6030192-6030312 1.0000 120 chr3R:19104244-19104364 1.0000 120 chr3R:23148512-23148632 1.0000 120 chr3R:9913570-9913690 1.0000 120 chr2R:13478501-13478621 1.0000 120 chr3R:9346728-9346848 1.0000 120 chrX:5026162-5026282 1.0000 120 chrX:17760681-17760801 1.0000 120 chr3L:13488481-13488601 1.0000 120 chr3R:23337328-23337448 1.0000 120 chr2R:20136859-20136979 1.0000 120 chr2R:8195113-8195233 1.0000 120 chr2R:15842797-15842917 1.0000 120 chr2R:19647736-19647856 1.0000 120 chr2R:24237490-24237610 1.0000 120 chrX:1466307-1466427 1.0000 120 chr3L:6446676-6446796 1.0000 120 chr3R:22628056-22628176 1.0000 120 chr3R:11614611-11614731 1.0000 120 chr3L:18007565-18007685 1.0000 120 chr3L:14055375-14055495 1.0000 120 chr3R:26192419-26192539 1.0000 120 chr2L:11222187-11222307 1.0000 120 chr3L:5627860-5627980 1.0000 120 chr3R:27171284-27171404 1.0000 120 chr3L:2808728-2808848 1.0000 120 chr3L:817899-818019 1.0000 120 chr2L:382950-383070 1.0000 120 chrX:11684546-11684666 1.0000 120 chr2R:21553795-21553915 1.0000 120 chr3R:29538586-29538706 1.0000 120 chrX:13644819-13644939 1.0000 120 chr2R:16812897-16813017 1.0000 120 chrX:12000357-12000477 1.0000 120 chr2R:19153389-19153509 1.0000 120 chr2R:6994691-6994811 1.0000 120 chr3L:12016311-12016431 1.0000 120 chr2L:7909356-7909476 1.0000 120 chrX:779551-779671 1.0000 120 chr3R:22044090-22044210 1.0000 120 chr3L:3423092-3423212 1.0000 120 chrX:4175960-4176080 1.0000 120 chrX:14897726-14897846 1.0000 120 chr3L:761839-761959 1.0000 120 chr3L:16183290-16183410 1.0000 120 chr3R:30134822-30134942 1.0000 120 chr3L:15180982-15181102 1.0000 120 chrX:8244404-8244524 1.0000 120 chr2L:19142598-19142718 1.0000 120 chr4:695236-695356 1.0000 120 chr3L:16408675-16408795 1.0000 120 chr2L:16406674-16406794 1.0000 120 chrX:1320521-1320641 1.0000 120 chr2L:5751585-5751705 1.0000 120 chr2L:5249894-5250014 1.0000 120 chrX:17879363-17879483 1.0000 120 chrX:3289489-3289609 1.0000 120 chr3L:9419452-9419572 1.0000 120 chr3L:18061783-18061903 1.0000 120 chr3R:29199895-29200015 1.0000 120 chr2L:7574389-7574509 1.0000 120 chr3L:17506153-17506273 1.0000 120 chr3L:1321314-1321434 1.0000 120 chr2R:22729318-22729438 1.0000 120 chr2R:19620102-19620222 1.0000 120 chr3R:21190914-21191034 1.0000 120 chrX:2658526-2658646 1.0000 120 chr2L:7619344-7619464 1.0000 120 chrX:2452885-2453005 1.0000 120 chr2L:12513892-12514012 1.0000 120 chr3L:10743053-10743173 1.0000 120 chr3R:10530750-10530870 1.0000 120 chr2L:8229721-8229841 1.0000 120 chrX:4936509-4936629 1.0000 120 chr3R:18914085-18914205 1.0000 120 chr3R:8142245-8142365 1.0000 120 chr2L:18628197-18628317 1.0000 120 chr3R:31225165-31225285 1.0000 120 chr2L:5295147-5295267 1.0000 120 chr3R:24298654-24298774 1.0000 120 chr3R:21648648-21648768 1.0000 120 chrX:740000-740120 1.0000 120 chr3L:12090338-12090458 1.0000 120 chrX:2334722-2334842 1.0000 120 chr2L:7974008-7974128 1.0000 120 chrX:22433029-22433149 1.0000 120 chr2R:8322841-8322961 1.0000 120 chrX:12677160-12677280 1.0000 120 chr3R:5103710-5103830 1.0000 120 chr2R:17452023-17452143 1.0000 120 chr3L:7113160-7113280 1.0000 120 chrX:1941830-1941950 1.0000 120 chr3L:2802178-2802298 1.0000 120 chr3R:22194816-22194936 1.0000 120 chr2L:11399684-11399804 1.0000 120 chr3L:1829636-1829756 1.0000 120 chrX:12015111-12015231 1.0000 120 chr2R:14975264-14975384 1.0000 120 chr2L:10791506-10791626 1.0000 120 chr3R:24996641-24996761 1.0000 120 chr3L:16974757-16974877 1.0000 120 chr3L:1374618-1374738 1.0000 120 chr3R:17119078-17119198 1.0000 120 chr3L:2866991-2867111 1.0000 120 chrX:10104615-10104735 1.0000 120 chr2L:3781518-3781638 1.0000 120 chr3L:1388262-1388382 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Sox102F/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Sox102F.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.329 C 0.172 G 0.169 T 0.33 Background letter frequencies (from file dataset with add-one prior applied): A 0.329 C 0.172 G 0.169 T 0.33 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGGRGCGG MEME-1 width = 8 sites = 13 llr = 139 E-value = 6.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGRGCGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :2:5:::: pos.-specific C ::12:8:: probability G 8884a:aa matrix T 2:1::2:: bits 2.6 * ** 2.3 * ** 2.1 * ** 1.8 *** **** Relative 1.5 *** **** Entropy 1.3 *** **** (15.4 bits) 1.0 *** **** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGAGCGG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRGCGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12677160-12677280 86 6.77e-07 CATGAAGCCA GGGGGCGG GATGGGGGGT chr3L:14456054-14456174 48 6.77e-07 TGGTCATTGA GGGGGCGG GCCGGGGGGA chr2R:15483735-15483855 89 2.00e-06 TCTTTTTTTC GGGAGCGG GGGTATGTAA chr2R:7473825-7473945 54 2.00e-06 GGTCGTGAGC GGGAGCGG GTGGCACGGC chr2R:21899236-21899356 72 2.00e-06 GATTGCGATC GGGAGCGG AAGGTGCGTG chr2L:20880653-20880773 37 6.62e-06 GATTTCTTTG GAGGGCGG GAAATTACCT chrX:11684546-11684666 45 7.31e-06 tGTGTCATAC GGCGGCGG CAGCCATGCC chr3R:17119078-17119198 97 1.50e-05 AGAGGGGCGA GAGAGCGG CAAACAAAAA chr3R:18914085-18914205 20 1.50e-05 CTATACCTTT TGGAGCGG ACATAGGTGA chr2R:22729318-22729438 97 1.50e-05 GAGAGTGTGC GGGAGTGG GAAACTCAGA chr3R:19064170-19064290 57 1.76e-05 CAATAAAAAT GGTGGCGG TTGCGGAAAC chr3R:23148512-23148632 88 2.17e-05 ATGATGATGG TGGCGCGG GTCGGAGGCA chr2L:16842608-16842728 104 2.17e-05 ggtggcccgt gggcgtgg caaTCCTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRGCGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12677160-12677280 6.8e-07 85_[+1]_27 chr3L:14456054-14456174 6.8e-07 47_[+1]_65 chr2R:15483735-15483855 2e-06 88_[+1]_24 chr2R:7473825-7473945 2e-06 53_[+1]_59 chr2R:21899236-21899356 2e-06 71_[+1]_41 chr2L:20880653-20880773 6.6e-06 36_[+1]_76 chrX:11684546-11684666 7.3e-06 44_[+1]_68 chr3R:17119078-17119198 1.5e-05 96_[+1]_16 chr3R:18914085-18914205 1.5e-05 19_[+1]_93 chr2R:22729318-22729438 1.5e-05 96_[+1]_16 chr3R:19064170-19064290 1.8e-05 56_[+1]_56 chr3R:23148512-23148632 2.2e-05 87_[+1]_25 chr2L:16842608-16842728 2.2e-05 103_[+1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRGCGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGRGCGG width=8 seqs=13 chrX:12677160-12677280 ( 86) GGGGGCGG 1 chr3L:14456054-14456174 ( 48) GGGGGCGG 1 chr2R:15483735-15483855 ( 89) GGGAGCGG 1 chr2R:7473825-7473945 ( 54) GGGAGCGG 1 chr2R:21899236-21899356 ( 72) GGGAGCGG 1 chr2L:20880653-20880773 ( 37) GAGGGCGG 1 chrX:11684546-11684666 ( 45) GGCGGCGG 1 chr3R:17119078-17119198 ( 97) GAGAGCGG 1 chr3R:18914085-18914205 ( 20) TGGAGCGG 1 chr2R:22729318-22729438 ( 97) GGGAGTGG 1 chr3R:19064170-19064290 ( 57) GGTGGCGG 1 chr3R:23148512-23148632 ( 88) TGGCGCGG 1 chr2L:16842608-16842728 ( 104) GGGCGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRGCGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2496 E= 6.4e-001 -1035 -1035 232 -110 -110 -1035 232 -1035 -1035 -116 232 -210 49 -16 119 -1035 -1035 -1035 256 -1035 -1035 230 -1035 -110 -1035 -1035 256 -1035 -1035 -1035 256 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRGCGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 6.4e-001 0.000000 0.000000 0.846154 0.153846 0.153846 0.000000 0.846154 0.000000 0.000000 0.076923 0.846154 0.076923 0.461538 0.153846 0.384615 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.846154 0.000000 0.153846 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRGCGG MEME-1 regular expression -------------------------------------------------------------------------------- GGG[AG]GCGG -------------------------------------------------------------------------------- Time 7.46 secs. ******************************************************************************** ******************************************************************************** MOTIF GCWGCMSC MEME-2 width = 8 sites = 11 llr = 120 E-value = 3.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCWGCMSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::3::6:: pos.-specific C :a2:a44a probability G a::a::6: matrix T ::5::::: bits 2.6 ** ** * 2.3 ** ** * 2.1 ** ** * 1.8 ** ** * Relative 1.5 ** ** ** Entropy 1.3 ** ** ** (15.7 bits) 1.0 ** ***** 0.8 ** ***** 0.5 ** ***** 0.3 ******** 0.0 -------- Multilevel GCTGCAGC consensus A CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCMSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24685035-24685155 70 1.39e-06 TTCAGAGCTC GCTGCCGC ACGACGACGA chr3R:14722696-14722816 25 1.39e-06 TGTTTTGCCT GCTGCCGC TGCTGTCTTG chrX:1941830-1941950 51 4.06e-06 CCAACGCAGC GCTGCAGC ACGAGATTGG chr3L:12090338-12090458 106 4.06e-06 GAAATTTACT GCTGCAGC TTGTTAC chr3L:18007565-18007685 82 4.79e-06 TGCGTTCTTC GCCGCCGC GTCTTCTCAC chrX:8667847-8667967 44 8.99e-06 ATTTATGCTT GCAGCCGC ATAACAATCT chr3L:16408675-16408795 63 1.44e-05 GTAAGAGTca gcagcagc agaagaagaa chrX:6574635-6574755 35 1.44e-05 GGTTTGCTTT GCTGCACC AACGATCGAA chr2L:1887882-1888002 71 1.44e-05 AGGTGGGCTA GCTGCACC GCATCCTATT chr3R:19064170-19064290 93 1.65e-05 AACGAAAGTT GCCGCACC AGCTCGCCAA chr4:695236-695356 6 2.06e-05 ATCCT GCAGCACC GGATATAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCMSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24685035-24685155 1.4e-06 69_[+2]_43 chr3R:14722696-14722816 1.4e-06 24_[+2]_88 chrX:1941830-1941950 4.1e-06 50_[+2]_62 chr3L:12090338-12090458 4.1e-06 105_[+2]_7 chr3L:18007565-18007685 4.8e-06 81_[+2]_31 chrX:8667847-8667967 9e-06 43_[+2]_69 chr3L:16408675-16408795 1.4e-05 62_[+2]_50 chrX:6574635-6574755 1.4e-05 34_[+2]_78 chr2L:1887882-1888002 1.4e-05 70_[+2]_42 chr3R:19064170-19064290 1.7e-05 92_[+2]_20 chr4:695236-695356 2.1e-05 5_[+2]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCMSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCWGCMSC width=8 seqs=11 chr2R:24685035-24685155 ( 70) GCTGCCGC 1 chr3R:14722696-14722816 ( 25) GCTGCCGC 1 chrX:1941830-1941950 ( 51) GCTGCAGC 1 chr3L:12090338-12090458 ( 106) GCTGCAGC 1 chr3L:18007565-18007685 ( 82) GCCGCCGC 1 chrX:8667847-8667967 ( 44) GCAGCCGC 1 chr3L:16408675-16408795 ( 63) GCAGCAGC 1 chrX:6574635-6574755 ( 35) GCTGCACC 1 chr2L:1887882-1888002 ( 71) GCTGCACC 1 chr3R:19064170-19064290 ( 93) GCCGCACC 1 chr4:695236-695356 ( 6) GCAGCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCMSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 3.6e+002 -1010 -1010 256 -1010 -1010 254 -1010 -1010 -27 8 -1010 72 -1010 -1010 256 -1010 -1010 254 -1010 -1010 95 108 -1010 -1010 -1010 108 191 -1010 -1010 254 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCMSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 3.6e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.272727 0.181818 0.000000 0.545455 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.636364 0.363636 0.000000 0.000000 0.000000 0.363636 0.636364 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCMSC MEME-2 regular expression -------------------------------------------------------------------------------- GC[TA]GC[AC][GC]C -------------------------------------------------------------------------------- Time 13.73 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGGRGG MEME-3 width = 8 sites = 3 llr = 39 E-value = 6.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGGRGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::7:: pos.-specific C :aa::::: probability G a::aa3aa matrix T :::::::: bits 2.6 ***** ** 2.3 ***** ** 2.1 ***** ** 1.8 ***** ** Relative 1.5 ***** ** Entropy 1.3 ***** ** (18.9 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCGGAGG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGRGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:633292-633412 2 1.34e-06 A GCCGGAGG ATGAGCTCGC chr3R:24603727-24603847 109 1.34e-06 GGAACGAGGA GCCGGAGG AGCC chr3L:14456054-14456174 56 2.03e-06 GAGGGGGCGG GCCGGGGG GAATGTGGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGRGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:633292-633412 1.3e-06 1_[+3]_111 chr3R:24603727-24603847 1.3e-06 108_[+3]_4 chr3L:14456054-14456174 2e-06 55_[+3]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGRGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGGRGG width=8 seqs=3 chr2L:633292-633412 ( 2) GCCGGAGG 1 chr3R:24603727-24603847 ( 109) GCCGGAGG 1 chr3L:14456054-14456174 ( 56) GCCGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGRGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 6.3e+003 -823 -823 256 -823 -823 253 -823 -823 -823 253 -823 -823 -823 -823 256 -823 -823 -823 256 -823 102 -823 98 -823 -823 -823 256 -823 -823 -823 256 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGRGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 6.3e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGRGG MEME-3 regular expression -------------------------------------------------------------------------------- GCCGG[AG]GG -------------------------------------------------------------------------------- Time 19.95 secs. ******************************************************************************** ******************************************************************************** MOTIF TSGCAGTG MEME-4 width = 8 sites = 12 llr = 123 E-value = 2.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TSGCAGTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::7::: pos.-specific C 23:a1::: probability G :7a::a1a matrix T 8:::3:9: bits 2.6 ** * * 2.3 ** * * 2.1 ** * * 1.8 ** * * Relative 1.5 *** * * Entropy 1.3 *** *** (14.7 bits) 1.0 **** *** 0.8 **** *** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGGCAGTG consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSGCAGTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:5249894-5250014 111 5.03e-06 GCATCGTTTT TGGCAGTG TG chr3R:31680023-31680143 16 5.03e-06 CAGTAAAAAC TGGCAGTG GCAATCGCTG chr3L:1321314-1321434 39 1.01e-05 TTTTTATGGC TCGCAGTG AGCTAAGAAA chr3L:16408675-16408795 46 1.01e-05 TTCATTTTTT TCGCAGTG TAAGAGTcag chrX:6021589-6021709 95 1.01e-05 TTAAAGATTT TCGCAGTG CAGGTTCGGG chrX:6574635-6574755 113 1.28e-05 TCCATTTTTT CGGCAGTG chr2L:633292-633412 58 1.28e-05 GGATGATGAT CGGCAGTG AAGCTGCACG chrX:2452885-2453005 76 1.78e-05 AACCAAGACT TGGCTGTG ATTCAGCTAA chrX:3841021-3841141 14 1.78e-05 TGCAGTTTTG TGGCTGTG GCCGAGTACG chr2R:15483735-15483855 28 2.04e-05 TGTGTTGTTG TGGCCGTG TGCTATATTG chr2L:5429249-5429369 1 3.08e-05 . TCGCTGTG GTACCACGAA chr2L:1887882-1888002 47 3.08e-05 TCGACTTACT TGGCAGGG CATTCCAGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSGCAGTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:5249894-5250014 5e-06 110_[+4]_2 chr3R:31680023-31680143 5e-06 15_[+4]_97 chr3L:1321314-1321434 1e-05 38_[+4]_74 chr3L:16408675-16408795 1e-05 45_[+4]_67 chrX:6021589-6021709 1e-05 94_[+4]_18 chrX:6574635-6574755 1.3e-05 112_[+4] chr2L:633292-633412 1.3e-05 57_[+4]_55 chrX:2452885-2453005 1.8e-05 75_[+4]_37 chrX:3841021-3841141 1.8e-05 13_[+4]_99 chr2R:15483735-15483855 2e-05 27_[+4]_85 chr2L:5429249-5429369 3.1e-05 [+4]_112 chr2L:1887882-1888002 3.1e-05 46_[+4]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSGCAGTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TSGCAGTG width=8 seqs=12 chr2L:5249894-5250014 ( 111) TGGCAGTG 1 chr3R:31680023-31680143 ( 16) TGGCAGTG 1 chr3L:1321314-1321434 ( 39) TCGCAGTG 1 chr3L:16408675-16408795 ( 46) TCGCAGTG 1 chrX:6021589-6021709 ( 95) TCGCAGTG 1 chrX:6574635-6574755 ( 113) CGGCAGTG 1 chr2L:633292-633412 ( 58) CGGCAGTG 1 chrX:2452885-2453005 ( 76) TGGCTGTG 1 chrX:3841021-3841141 ( 14) TGGCTGTG 1 chr2R:15483735-15483855 ( 28) TGGCCGTG 1 chr2L:5429249-5429369 ( 1) TCGCTGTG 1 chr2L:1887882-1888002 ( 47) TGGCAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSGCAGTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 2.0e+004 -1023 -5 -1023 134 -1023 95 198 -1023 -1023 -1023 256 -1023 -1023 254 -1023 -1023 102 -104 -1023 -40 -1023 -1023 256 -1023 -1023 -1023 -102 147 -1023 -1023 256 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSGCAGTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.0e+004 0.000000 0.166667 0.000000 0.833333 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.083333 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSGCAGTG MEME-4 regular expression -------------------------------------------------------------------------------- T[GC]GC[AT]GTG -------------------------------------------------------------------------------- Time 26.18 secs. ******************************************************************************** ******************************************************************************** MOTIF AGMGGGGC MEME-5 width = 8 sites = 7 llr = 77 E-value = 2.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGMGGGGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 7:4::::: pos.-specific C 1:6:::1a probability G 19:aaa9: matrix T :1:::::: bits 2.6 *** * 2.3 *** * 2.1 ***** 1.8 * ***** Relative 1.5 * ***** Entropy 1.3 * ***** (15.9 bits) 1.0 ******* 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AGCGGGGC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMGGGGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:740000-740120 106 1.34e-06 GTAGCGAAAA AGCGGGGC ATTTGCC chr3R:17119078-17119198 87 4.60e-06 CTGAATAAAG AGAGGGGC GAGAGAGCGG chr2R:7040082-7040202 105 4.60e-06 TTCAGATTCG AGAGGGGC CCTTGGGT chr2L:7334349-7334469 43 5.30e-06 ATCCCCATAT CGCGGGGC Caaaaaaaaa chr3R:31225165-31225285 99 7.98e-06 GACAAACCGA GGAGGGGC ACCTGTTATT chr3L:1321314-1321434 59 7.98e-06 CTAAGAAAAC AGCGGGCC CCAGTGATTG chr2L:700933-701053 14 1.19e-05 ACTGACAGAA ATCGGGGC TTCAAAGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMGGGGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:740000-740120 1.3e-06 105_[+5]_7 chr3R:17119078-17119198 4.6e-06 86_[+5]_26 chr2R:7040082-7040202 4.6e-06 104_[+5]_8 chr2L:7334349-7334469 5.3e-06 42_[+5]_70 chr3R:31225165-31225285 8e-06 98_[+5]_14 chr3L:1321314-1321434 8e-06 58_[+5]_54 chr2L:700933-701053 1.2e-05 13_[+5]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMGGGGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGMGGGGC width=8 seqs=7 chrX:740000-740120 ( 106) AGCGGGGC 1 chr3R:17119078-17119198 ( 87) AGAGGGGC 1 chr2R:7040082-7040202 ( 105) AGAGGGGC 1 chr2L:7334349-7334469 ( 43) CGCGGGGC 1 chr3R:31225165-31225285 ( 99) GGAGGGGC 1 chr3L:1321314-1321434 ( 59) AGCGGGCC 1 chr2L:700933-701053 ( 14) ATCGGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMGGGGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 2.1e+004 112 -27 -24 -945 -945 -945 234 -120 38 173 -945 -945 -945 -945 256 -945 -945 -945 256 -945 -945 -945 256 -945 -945 -27 234 -945 -945 254 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMGGGGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.1e+004 0.714286 0.142857 0.142857 0.000000 0.000000 0.000000 0.857143 0.142857 0.428571 0.571429 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMGGGGC MEME-5 regular expression -------------------------------------------------------------------------------- AG[CA]GGGGC -------------------------------------------------------------------------------- Time 32.40 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:27593315-27593435 9.95e-01 120 chr3R:31297118-31297238 9.18e-01 120 chrX:3055928-3056048 5.90e-01 120 chr2L:5231641-5231761 4.15e-01 120 chr2L:8672354-8672474 9.69e-01 120 chr2R:18610452-18610572 9.93e-01 120 chr2R:14467085-14467205 9.98e-01 120 chr2R:10580601-10580721 6.44e-01 120 chr2R:12014519-12014639 1.00e+00 120 chr3L:10359560-10359680 9.55e-01 120 chrX:173674-173794 9.33e-01 120 chr3L:8763887-8764007 9.89e-01 120 chr3L:17975468-17975588 3.06e-01 120 chr2R:15513545-15513665 1.14e-01 120 chrX:1574447-1574567 2.88e-01 120 chr3L:8819282-8819402 1.03e-03 66_[+2(9.38e-05)]_46 chr3R:31424554-31424674 3.07e-02 120 chr3R:8272723-8272843 6.49e-01 120 chr2R:22144361-22144481 9.99e-01 120 chr2L:4588968-4589088 5.04e-02 120 chr2L:13999057-13999177 7.51e-01 120 chr3L:22157771-22157891 9.19e-01 120 chr2L:11870912-11871032 4.67e-02 120 chr2R:7909603-7909723 7.88e-01 120 chr2L:1486389-1486509 9.14e-01 120 chrX:20509639-20509759 9.51e-01 120 chr3R:8968968-8969088 5.57e-01 120 chr3R:21827615-21827735 9.20e-01 120 chr2L:700933-701053 1.05e-01 13_[+5(1.19e-05)]_99 chr3L:6471948-6472068 3.48e-01 120 chr2L:7334349-7334469 3.57e-04 42_[+5(5.30e-06)]_70 chr3R:11980046-11980166 9.81e-01 120 chr2L:650996-651116 5.76e-01 120 chrX:14750625-14750745 9.63e-01 120 chr3L:18198925-18199045 9.61e-01 120 chr2L:4567365-4567485 9.97e-01 120 chr2R:19913860-19913980 6.97e-01 120 chr2R:7013115-7013235 9.26e-01 120 chr2R:21899236-21899356 1.14e-03 71_[+1(2.00e-06)]_41 chr3L:3649718-3649838 2.85e-01 120 chr2L:16842608-16842728 1.14e-04 103_[+1(2.17e-05)]_9 chr3L:14456054-14456174 4.01e-08 47_[+1(6.77e-07)]_[+3(2.03e-06)]_57 chrX:10893341-10893461 7.51e-01 120 chr3R:24603727-24603847 1.00e-03 108_[+3(1.34e-06)]_4 chrX:19149268-19149388 8.87e-01 120 chr2L:633292-633412 6.97e-06 1_[+3(1.34e-06)]_48_[+4(1.28e-05)]_\ 55 chr2R:10772060-10772180 5.16e-01 120 chr2R:19618121-19618241 2.70e-02 120 chr2L:1887882-1888002 8.82e-05 46_[+4(3.08e-05)]_16_[+2(1.44e-05)]_\ 42 chr2R:16818836-16818956 9.41e-01 120 chr3L:8371023-8371143 5.92e-01 120 chr3R:31308976-31309096 3.24e-01 120 chr2L:658125-658245 9.79e-01 120 chr3L:5867021-5867141 5.33e-01 120 chr2L:8585207-8585327 9.67e-01 120 chr3R:16985672-16985792 6.17e-01 120 chr3L:5637627-5637747 1.00e+00 120 chrX:6457999-6458119 9.93e-01 120 chr3L:14453339-14453459 9.84e-01 120 chr3R:8116072-8116192 4.08e-01 120 chr3R:10527610-10527730 1.20e-01 120 chr3R:8282874-8282994 1.71e-01 96_[+1(9.51e-05)]_16 chr2L:20880653-20880773 7.36e-03 36_[+1(6.62e-06)]_76 chr2L:16843422-16843542 4.02e-01 120 chr3R:25461803-25461923 9.84e-01 120 chr2L:15459021-15459141 9.72e-01 120 chrX:6021589-6021709 1.94e-03 94_[+4(1.01e-05)]_18 chrX:8667847-8667967 1.52e-02 43_[+2(8.99e-06)]_69 chr2L:11328505-11328625 1.00e+00 120 chr3R:22424143-22424263 9.98e-01 120 chr3L:20747682-20747802 9.76e-01 120 chrX:13764837-13764957 9.57e-01 120 chr3L:15005213-15005333 9.95e-01 120 chr3R:14722696-14722816 5.74e-03 24_[+2(1.39e-06)]_32_[+2(2.68e-05)]_\ 48 chr3L:6771350-6771470 7.97e-01 120 chr3L:3695480-3695600 1.00e+00 120 chr3R:4961572-4961692 6.43e-01 120 chr2R:7473825-7473945 2.81e-05 53_[+1(2.00e-06)]_59 chr3L:2837623-2837743 3.72e-01 120 chrX:17814956-17815076 7.10e-01 120 chr2R:18312557-18312677 5.20e-01 120 chr3L:8716169-8716289 1.00e+00 120 chr3R:30171405-30171525 8.10e-01 120 chr3R:22205648-22205768 2.99e-01 120 chr2R:15483735-15483855 8.74e-07 27_[+4(2.04e-05)]_53_[+1(2.00e-06)]_\ 24 chr3R:21704622-21704742 1.67e-01 120 chr2L:634234-634354 3.71e-01 120 chr2R:15842598-15842718 4.27e-02 1_[+2(2.68e-05)]_111 chr2L:15275907-15276027 8.60e-01 120 chrX:9892976-9893096 9.64e-01 120 chr3L:12097344-12097464 6.65e-01 120 chr2R:23022655-23022775 9.91e-01 120 chrX:17551154-17551274 6.68e-01 120 chr3L:15258520-15258640 9.64e-01 120 chr3L:727294-727414 2.09e-01 120 chr2L:11395811-11395931 8.85e-01 120 chr3L:804644-804764 3.22e-01 120 chr3R:16501511-16501631 3.24e-01 120 chrX:5608646-5608766 8.01e-01 120 chr2L:9438378-9438498 1.96e-01 120 chr2R:7531246-7531366 9.57e-01 120 chr2L:18517203-18517323 1.35e-01 120 chr2L:16536620-16536740 8.68e-03 120 chr3L:729501-729621 6.64e-01 120 chr2R:7040082-7040202 1.47e-03 104_[+5(4.60e-06)]_8 chr2R:19187328-19187448 9.80e-01 120 chr2L:3554059-3554179 5.98e-01 120 chrX:13568293-13568413 9.14e-01 120 chrX:13394489-13394609 5.57e-02 120 chr3L:758660-758780 9.98e-01 120 chr2R:23225169-23225289 6.68e-01 120 chr3R:31680023-31680143 1.33e-04 15_[+4(5.03e-06)]_97 chr3R:19064170-19064290 4.53e-05 56_[+1(1.76e-05)]_28_[+2(1.65e-05)]_\ 20 chrX:13541393-13541513 7.11e-01 120 chr2L:14226819-14226939 3.79e-01 120 chrX:5026814-5026934 8.94e-01 120 chrX:5025462-5025582 9.97e-01 120 chr3R:19603119-19603239 8.73e-01 120 chr3R:13934758-13934878 9.63e-01 120 chr3L:1320591-1320711 3.36e-01 120 chrX:17545678-17545798 9.09e-01 120 chr2L:17782078-17782198 1.00e+00 120 chrX:3841021-3841141 1.66e-03 13_[+4(1.78e-05)]_99 chrX:17172306-17172426 8.63e-01 120 chr3R:15566481-15566601 6.93e-01 120 chr3R:29165033-29165153 1.00e+00 120 chr3L:21594551-21594671 9.74e-02 [+5(9.07e-05)]_112 chr3R:8029739-8029859 9.82e-01 120 chr3R:13793423-13793543 9.98e-01 120 chr3R:13941552-13941672 5.01e-02 120 chr2R:21470539-21470659 5.46e-01 120 chr3R:30056101-30056221 8.16e-01 120 chrX:4322791-4322911 4.32e-01 120 chrX:6022262-6022382 9.58e-01 120 chrX:6574635-6574755 2.57e-03 34_[+2(1.44e-05)]_70_[+4(1.28e-05)] chr3L:1458142-1458262 9.92e-01 120 chr2L:3341724-3341844 7.56e-01 120 chr3R:21823246-21823366 7.21e-01 120 chr4:695939-696059 2.93e-01 120 chr2R:24685035-24685155 8.03e-05 69_[+2(1.39e-06)]_43 chr2L:5429249-5429369 1.89e-01 [+4(3.08e-05)]_112 chr3L:14239407-14239527 2.48e-01 120 chr3L:2152909-2153029 3.92e-02 120 chrX:6030192-6030312 2.23e-01 120 chr3R:19104244-19104364 7.65e-01 120 chr3R:23148512-23148632 6.77e-06 87_[+1(2.17e-05)]_[+3(5.00e-05)]_17 chr3R:9913570-9913690 9.80e-01 120 chr2R:13478501-13478621 7.06e-01 120 chr3R:9346728-9346848 8.95e-01 120 chrX:5026162-5026282 8.93e-01 120 chrX:17760681-17760801 9.20e-01 120 chr3L:13488481-13488601 5.33e-02 120 chr3R:23337328-23337448 3.67e-01 120 chr2R:20136859-20136979 3.88e-01 120 chr2R:8195113-8195233 9.52e-01 120 chr2R:15842797-15842917 9.62e-01 120 chr2R:19647736-19647856 1.26e-01 106_[+2(5.50e-05)]_6 chr2R:24237490-24237610 5.06e-01 120 chrX:1466307-1466427 9.70e-01 120 chr3L:6446676-6446796 7.98e-01 120 chr3R:22628056-22628176 9.20e-01 120 chr3R:11614611-11614731 9.48e-01 120 chr3L:18007565-18007685 4.29e-03 81_[+2(4.79e-06)]_31 chr3L:14055375-14055495 8.04e-01 120 chr3R:26192419-26192539 4.76e-01 120 chr2L:11222187-11222307 2.35e-01 120 chr3L:5627860-5627980 1.25e-01 120 chr3R:27171284-27171404 9.79e-01 120 chr3L:2808728-2808848 1.71e-01 120 chr3L:817899-818019 9.83e-01 120 chr2L:382950-383070 9.74e-01 120 chrX:11684546-11684666 1.40e-05 44_[+1(7.31e-06)]_68 chr2R:21553795-21553915 9.89e-01 120 chr3R:29538586-29538706 9.98e-01 120 chrX:13644819-13644939 8.33e-01 120 chr2R:16812897-16813017 4.54e-01 120 chrX:12000357-12000477 1.91e-01 66_[+4(6.91e-05)]_46 chr2R:19153389-19153509 8.10e-01 120 chr2R:6994691-6994811 7.94e-01 120 chr3L:12016311-12016431 1.89e-01 120 chr2L:7909356-7909476 1.00e+00 120 chrX:779551-779671 9.96e-01 120 chr3R:22044090-22044210 1.08e-01 120 chr3L:3423092-3423212 4.33e-01 120 chrX:4175960-4176080 3.15e-01 120 chrX:14897726-14897846 7.95e-01 120 chr3L:761839-761959 9.62e-01 120 chr3L:16183290-16183410 9.50e-01 120 chr3R:30134822-30134942 5.86e-01 120 chr3L:15180982-15181102 1.00e+00 120 chrX:8244404-8244524 3.04e-01 120 chr2L:19142598-19142718 9.66e-01 120 chr4:695236-695356 9.47e-03 5_[+2(2.06e-05)]_107 chr3L:16408675-16408795 6.56e-04 45_[+4(1.01e-05)]_9_[+2(1.44e-05)]_\ 50 chr2L:16406674-16406794 9.45e-01 120 chrX:1320521-1320641 6.72e-01 120 chr2L:5751585-5751705 9.99e-01 120 chr2L:5249894-5250014 8.31e-03 110_[+4(5.03e-06)]_2 chrX:17879363-17879483 1.37e-01 120 chrX:3289489-3289609 1.85e-01 120 chr3L:9419452-9419572 8.43e-01 120 chr3L:18061783-18061903 1.72e-01 120 chr3R:29199895-29200015 5.04e-01 120 chr2L:7574389-7574509 4.49e-01 120 chr3L:17506153-17506273 9.91e-01 120 chr3L:1321314-1321434 1.74e-05 38_[+4(1.01e-05)]_12_[+5(7.98e-06)]_\ 54 chr2R:22729318-22729438 8.51e-05 96_[+1(1.50e-05)]_16 chr2R:19620102-19620222 8.74e-01 120 chr3R:21190914-21191034 4.68e-01 120 chrX:2658526-2658646 5.91e-01 120 chr2L:7619344-7619464 9.98e-01 120 chrX:2452885-2453005 4.03e-03 75_[+4(1.78e-05)]_37 chr2L:12513892-12514012 2.13e-01 120 chr3L:10743053-10743173 5.58e-02 120 chr3R:10530750-10530870 4.48e-01 120 chr2L:8229721-8229841 9.90e-01 120 chrX:4936509-4936629 9.30e-01 120 chr3R:18914085-18914205 5.56e-02 19_[+1(1.50e-05)]_93 chr3R:8142245-8142365 8.52e-01 120 chr2L:18628197-18628317 8.22e-02 120 chr3R:31225165-31225285 1.38e-03 98_[+5(7.98e-06)]_14 chr2L:5295147-5295267 1.19e-01 120 chr3R:24298654-24298774 2.48e-02 120 chr3R:21648648-21648768 9.15e-01 120 chrX:740000-740120 2.98e-03 105_[+5(1.34e-06)]_7 chr3L:12090338-12090458 1.99e-03 105_[+2(4.06e-06)]_7 chrX:2334722-2334842 3.05e-04 120 chr2L:7974008-7974128 9.61e-01 120 chrX:22433029-22433149 1.00e+00 120 chr2R:8322841-8322961 4.28e-01 120 chrX:12677160-12677280 1.55e-04 85_[+1(6.77e-07)]_27 chr3R:5103710-5103830 6.97e-03 120 chr2R:17452023-17452143 5.01e-01 120 chr3L:7113160-7113280 9.99e-01 120 chrX:1941830-1941950 2.87e-06 50_[+2(4.06e-06)]_16_[+1(5.28e-05)]_\ 11_[+1(6.83e-05)]_19 chr3L:2802178-2802298 3.85e-01 120 chr3R:22194816-22194936 1.00e+00 120 chr2L:11399684-11399804 5.12e-01 120 chr3L:1829636-1829756 9.88e-01 120 chrX:12015111-12015231 7.33e-02 24_[+2(5.50e-05)]_88 chr2R:14975264-14975384 6.23e-01 120 chr2L:10791506-10791626 6.65e-02 120 chr3R:24996641-24996761 1.20e-01 61_[+5(6.19e-05)]_51 chr3L:16974757-16974877 9.71e-01 120 chr3L:1374618-1374738 9.76e-01 120 chr3R:17119078-17119198 3.15e-04 86_[+5(4.60e-06)]_2_[+1(1.50e-05)]_\ 16 chr3L:2866991-2867111 5.35e-01 120 chrX:10104615-10104735 9.93e-01 120 chr2L:3781518-3781638 9.31e-01 120 chr3L:1388262-1388382 1.86e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************