******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Sox100B.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:8295488-8295608 1.0000 120 chr3L:18795513-18795633 1.0000 120 chrX:9120160-9120280 1.0000 120 chr3L:18766299-18766419 1.0000 120 chr3R:24206105-24206225 1.0000 120 chr2L:16548516-16548636 1.0000 120 chr3L:7009463-7009583 1.0000 120 chr2L:11931666-11931786 1.0000 120 chr3L:7811042-7811162 1.0000 120 chrX:11841838-11841958 1.0000 120 chr4:1218869-1218989 1.0000 120 chr2R:14021937-14022057 1.0000 120 chrX:16815336-16815456 1.0000 120 chr2L:20939750-20939870 1.0000 120 chr3L:6807636-6807756 1.0000 120 chr2R:6219944-6220064 1.0000 120 chr3L:12717708-12717828 1.0000 120 chr3L:15494361-15494481 1.0000 120 chrX:17716895-17717015 1.0000 120 chr3L:11444303-11444423 1.0000 120 chr3L:8423340-8423460 1.0000 120 chr3R:16553619-16553739 1.0000 120 chr3L:4534066-4534186 1.0000 120 chr2R:9903557-9903677 1.0000 120 chr2L:20823262-20823382 1.0000 120 chr3R:6241320-6241440 1.0000 120 chr2L:14123712-14123832 1.0000 120 chrX:15076464-15076584 1.0000 120 chr2L:3092664-3092784 1.0000 120 chr3R:24580590-24580710 1.0000 120 chr2L:19463549-19463669 1.0000 120 chr3L:8076326-8076446 1.0000 120 chr3R:11663616-11663736 1.0000 120 chr2R:8860072-8860192 1.0000 120 chr3L:4720636-4720756 1.0000 120 chr3L:11467164-11467284 1.0000 120 chr3L:15775590-15775710 1.0000 120 chr3R:24906150-24906270 1.0000 120 chrX:19158618-19158738 1.0000 120 chrX:17694981-17695101 1.0000 120 chr3L:10786094-10786214 1.0000 120 chr2L:10689535-10689655 1.0000 120 chrX:19884340-19884460 1.0000 120 chr3L:5280169-5280289 1.0000 120 chr3R:13553213-13553333 1.0000 120 chrX:13208167-13208287 1.0000 120 chr3R:29524512-29524632 1.0000 120 chr3L:5809227-5809347 1.0000 120 chr3L:9468422-9468542 1.0000 120 chr2R:7477430-7477550 1.0000 120 chr2R:7879110-7879230 1.0000 120 chr3L:7962117-7962237 1.0000 120 chr3L:7953046-7953166 1.0000 120 chr2R:11176296-11176416 1.0000 120 chr3R:19467611-19467731 1.0000 120 chr2R:17718975-17719095 1.0000 120 chrX:6067702-6067822 1.0000 120 chr3R:16241922-16242042 1.0000 120 chr3R:6352179-6352299 1.0000 120 chr2L:12049185-12049305 1.0000 120 chr2L:21263942-21264062 1.0000 120 chr3L:16917526-16917646 1.0000 120 chr3L:18795717-18795837 1.0000 120 chr3L:16870778-16870898 1.0000 120 chrX:17712697-17712817 1.0000 120 chr2R:18771146-18771266 1.0000 120 chr3L:18273293-18273413 1.0000 120 chr3L:1083511-1083631 1.0000 120 chrX:11846442-11846562 1.0000 120 chr2L:5445934-5446054 1.0000 120 chr2R:12951467-12951587 1.0000 120 chr3L:15693157-15693277 1.0000 120 chr2L:16869061-16869181 1.0000 120 chr3L:10849681-10849801 1.0000 120 chr2R:11803386-11803506 1.0000 120 chr2R:12229629-12229749 1.0000 120 chr3L:4384178-4384298 1.0000 120 chr2L:11931867-11931987 1.0000 120 chr3L:18102189-18102309 1.0000 120 chrX:16813393-16813513 1.0000 120 chr3R:16213955-16214075 1.0000 120 chr2R:14305241-14305361 1.0000 120 chr3R:13804099-13804219 1.0000 120 chr3R:20001697-20001817 1.0000 120 chrX:15121940-15122060 1.0000 120 chr3L:11107602-11107722 1.0000 120 chr3L:7592252-7592372 1.0000 120 chr3R:21589584-21589704 1.0000 120 chr2L:19019235-19019355 1.0000 120 chr3R:6482214-6482334 1.0000 120 chr3R:21348031-21348151 1.0000 120 chr3L:10893505-10893625 1.0000 120 chr2R:6157682-6157802 1.0000 120 chrX:3288933-3289053 1.0000 120 chr3L:4286868-4286988 1.0000 120 chr3L:19191994-19192114 1.0000 120 chr3L:19073995-19074115 1.0000 120 chr3L:6885811-6885931 1.0000 120 chr3R:18804647-18804767 1.0000 120 chr3L:11443561-11443681 1.0000 120 chr3R:13907817-13907937 1.0000 120 chr3L:4355343-4355463 1.0000 120 chr3R:11869788-11869908 1.0000 120 chrX:23071297-23071417 1.0000 120 chr2R:14485429-14485549 1.0000 120 chr2R:14915153-14915273 1.0000 120 chr3R:16215104-16215224 1.0000 120 chr3L:2582058-2582178 1.0000 120 chr2R:23739395-23739515 1.0000 120 chr2R:10437518-10437638 1.0000 120 chrX:15364584-15364704 1.0000 120 chr2L:7966174-7966294 1.0000 120 chr3L:21056323-21056443 1.0000 120 chrX:17692986-17693106 1.0000 120 chr3L:17226496-17226616 1.0000 120 chr2R:14698874-14698994 1.0000 120 chr3R:13549674-13549794 1.0000 120 chr3R:14002326-14002446 1.0000 120 chr2L:3569981-3570101 1.0000 120 chr3L:22909981-22910101 1.0000 120 chr2L:9963894-9964014 1.0000 120 chr2L:3805337-3805457 1.0000 120 chr3R:20950195-20950315 1.0000 120 chr2R:10681456-10681576 1.0000 120 chrX:13226595-13226715 1.0000 120 chr2R:15919888-15920008 1.0000 120 chr3R:21837143-21837263 1.0000 120 chr2R:9684183-9684303 1.0000 120 chr3R:18508433-18508553 1.0000 120 chr2L:14537560-14537680 1.0000 120 chr3R:16801042-16801162 1.0000 120 chr2L:6948942-6949062 1.0000 120 chr3L:15532875-15532995 1.0000 120 chr3L:10428964-10429084 1.0000 120 chr3L:21859770-21859890 1.0000 120 chr2R:11176499-11176619 1.0000 120 chrX:20644045-20644165 1.0000 120 chr3R:20829620-20829740 1.0000 120 chr3L:3059390-3059510 1.0000 120 chr2R:22384525-22384645 1.0000 120 chr3L:6157693-6157813 1.0000 120 chr3R:27919505-27919625 1.0000 120 chr3L:16697246-16697366 1.0000 120 chr2L:18150945-18151065 1.0000 120 chr3L:3485211-3485331 1.0000 120 chrX:3745321-3745441 1.0000 120 chr3R:19093262-19093382 1.0000 120 chrX:12225457-12225577 1.0000 120 chr2R:14971188-14971308 1.0000 120 chr3R:18167455-18167575 1.0000 120 chr2R:13560806-13560926 1.0000 120 chrX:7995238-7995358 1.0000 120 chr3L:9505453-9505573 1.0000 120 chr3R:9494407-9494527 1.0000 120 chr3L:6797575-6797695 1.0000 120 chrX:3024673-3024793 1.0000 120 chr3L:15034560-15034680 1.0000 120 chr3L:16657101-16657221 1.0000 120 chr2R:13996734-13996854 1.0000 120 chr2L:10276622-10276742 1.0000 120 chrX:19225012-19225132 1.0000 120 chr2L:18151879-18151999 1.0000 120 chr3R:12562161-12562281 1.0000 120 chr3R:17955858-17955978 1.0000 120 chr3R:6241522-6241642 1.0000 120 chr3R:6352935-6353055 1.0000 120 chr2L:20823461-20823581 1.0000 120 chrX:3455562-3455682 1.0000 120 chrX:12937963-12938083 1.0000 120 chr3L:15693356-15693476 1.0000 120 chr3L:9505652-9505772 1.0000 120 chr3L:14328488-14328608 1.0000 120 chr2R:8051518-8051638 1.0000 120 chr3R:15677786-15677906 1.0000 120 chr3L:11291628-11291748 1.0000 120 chr2R:7054288-7054408 1.0000 120 chr2L:3100996-3101116 1.0000 120 chr3R:14598099-14598219 1.0000 120 chr3R:16336470-16336590 1.0000 120 chrX:8125360-8125480 1.0000 120 chrX:11848846-11848966 1.0000 120 chr2R:13015292-13015412 1.0000 120 chr3R:16801241-16801361 1.0000 120 chr3R:6791285-6791405 1.0000 120 chr4:1199225-1199345 1.0000 120 chr3L:11336506-11336626 1.0000 120 chr3R:31688785-31688905 1.0000 120 chrX:20631238-20631358 1.0000 120 chr2R:24293622-24293742 1.0000 120 chr3R:5413070-5413190 1.0000 120 chr3R:18785916-18786036 1.0000 120 chr3L:10337741-10337861 1.0000 120 chr3R:22494647-22494767 1.0000 120 chr3R:15129054-15129174 1.0000 120 chr2R:12729335-12729455 1.0000 120 chr2R:10854365-10854485 1.0000 120 chr3L:17113346-17113466 1.0000 120 chr3R:20950394-20950514 1.0000 120 chrX:18524976-18525096 1.0000 120 chr2R:15034915-15035035 1.0000 120 chr3L:3380604-3380724 1.0000 120 chr3L:10767280-10767400 1.0000 120 chr3R:4732400-4732520 1.0000 120 chr3L:17937412-17937532 1.0000 120 chrX:19166502-19166622 1.0000 120 chr3R:13713683-13713803 1.0000 120 chr3L:11408873-11408993 1.0000 120 chrX:14634816-14634936 1.0000 120 chr3L:3788976-3789096 1.0000 120 chr3L:7368019-7368139 1.0000 120 chr3L:517350-517470 1.0000 120 chr2L:10249819-10249939 1.0000 120 chrX:3019759-3019879 1.0000 120 chr3L:6085303-6085423 1.0000 120 chr2R:12727670-12727790 1.0000 120 chr3R:9344898-9345018 1.0000 120 chr3R:28586980-28587100 1.0000 120 chr3L:14172612-14172732 1.0000 120 chr2R:14576120-14576240 1.0000 120 chr3L:13403263-13403383 1.0000 120 chr2L:20204673-20204793 1.0000 120 chr3R:14284536-14284656 1.0000 120 chr3L:15588568-15588688 1.0000 120 chrX:17780407-17780527 1.0000 120 chr2L:7150937-7151057 1.0000 120 chr3L:14363268-14363388 1.0000 120 chr2L:9493485-9493605 1.0000 120 chr3L:12668163-12668283 1.0000 120 chr3R:28327293-28327413 1.0000 120 chrX:12004602-12004722 1.0000 120 chr3L:20006852-20006972 1.0000 120 chr2L:14405121-14405241 1.0000 120 chr3R:4311131-4311251 1.0000 120 chrX:9899864-9899984 1.0000 120 chr2R:13475073-13475193 1.0000 120 chrX:16854896-16855016 1.0000 120 chr2R:12547745-12547865 1.0000 120 chr3R:21594503-21594623 1.0000 120 chrX:14743939-14744059 1.0000 120 chr2L:7957326-7957446 1.0000 120 chr3L:10951237-10951357 1.0000 120 chr3R:14300065-14300185 1.0000 120 chrX:18004381-18004501 1.0000 120 chr2L:2905133-2905253 1.0000 120 chr2L:10752324-10752444 1.0000 120 chr3R:21420015-21420135 1.0000 120 chr3L:11298488-11298608 1.0000 120 chr2L:14234475-14234595 1.0000 120 chr3R:23445560-23445680 1.0000 120 chr2L:6472445-6472565 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Sox100B/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Sox100B.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.366 C 0.136 G 0.134 T 0.365 Background letter frequencies (from file dataset with add-one prior applied): A 0.366 C 0.136 G 0.134 T 0.365 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCTGCRGC MEME-1 width = 8 sites = 10 llr = 114 E-value = 4.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGCRGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::2::522 pos.-specific C :9::a::8 probability G a12a:58: matrix T ::6::::: bits 2.9 * ** 2.6 * ** 2.3 ** ** 2.0 ** ** * Relative 1.7 ** ** ** Entropy 1.5 ** ** ** (16.4 bits) 1.2 ** ***** 0.9 ** ***** 0.6 ** ***** 0.3 ******** 0.0 -------- Multilevel GCTGCAGC consensus A GAA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCRGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12729335-12729455 90 2.96e-07 TGTGTATATG GCTGCGGC TTTTAGCTTT chr3L:17937412-17937532 105 4.05e-07 TTCATTTCAA GCGGCGGC TCTACCAt chr3R:14300065-14300185 11 1.21e-06 TGTGGAAAAT GCTGCAGC CCCATATTTA chrX:6067702-6067822 103 1.81e-06 ACATAACTAT GCAGCGGC TCCACGAGGC chrX:8295488-8295608 2 2.62e-06 c gcagcagc tgaaagagtg chr3L:8076326-8076446 76 3.81e-06 TTATTCTTTA GCTGCGGA ATCAACAAAA chr3L:19191994-19192114 85 4.91e-06 CCACACAAAT GCTGCGAC GGTTGCTCAT chr3L:7009463-7009583 30 6.01e-06 TTACAGAAGT GGTGCAGC TGATTTTACT chr2L:9963894-9964014 83 8.77e-06 AATTTCGAGG GCTGCAGA GTAAAAAAAT chrX:3024673-3024793 3 1.42e-05 TG GCGGCAAC CACACGTCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCRGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12729335-12729455 3e-07 89_[+1]_23 chr3L:17937412-17937532 4e-07 104_[+1]_8 chr3R:14300065-14300185 1.2e-06 10_[+1]_102 chrX:6067702-6067822 1.8e-06 102_[+1]_10 chrX:8295488-8295608 2.6e-06 1_[+1]_111 chr3L:8076326-8076446 3.8e-06 75_[+1]_37 chr3L:19191994-19192114 4.9e-06 84_[+1]_28 chr3L:7009463-7009583 6e-06 29_[+1]_83 chr2L:9963894-9964014 8.8e-06 82_[+1]_30 chrX:3024673-3024793 1.4e-05 2_[+1]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCRGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGCRGC width=8 seqs=10 chr2R:12729335-12729455 ( 90) GCTGCGGC 1 chr3L:17937412-17937532 ( 105) GCGGCGGC 1 chr3R:14300065-14300185 ( 11) GCTGCAGC 1 chrX:6067702-6067822 ( 103) GCAGCGGC 1 chrX:8295488-8295608 ( 2) GCAGCAGC 1 chr3L:8076326-8076446 ( 76) GCTGCGGA 1 chr3L:19191994-19192114 ( 85) GCTGCGAC 1 chr3L:7009463-7009583 ( 30) GGTGCAGC 1 chr2L:9963894-9964014 ( 83) GCTGCAGA 1 chrX:3024673-3024793 ( 3) GCGGCAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCRGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 4.1e+000 -997 -997 290 -997 -997 273 -42 -997 -87 -997 58 72 -997 -997 290 -997 -997 288 -997 -997 45 -997 190 -997 -87 -997 258 -997 -87 256 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCRGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 4.1e+000 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.200000 0.000000 0.200000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.200000 0.000000 0.800000 0.000000 0.200000 0.800000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCRGC MEME-1 regular expression -------------------------------------------------------------------------------- GC[TAG]GC[AG][GA][CA] -------------------------------------------------------------------------------- Time 7.63 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCASWGC MEME-2 width = 8 sites = 16 llr = 161 E-value = 1.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCASWGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 13:8:4:: pos.-specific C 7:a:51:a probability G :8::5:a: matrix T 2::2:5:: bits 2.9 * ** 2.6 * ** 2.3 * ** 2.0 * * ** Relative 1.7 ** * ** Entropy 1.5 ** * ** (14.5 bits) 1.2 *** * ** 0.9 ***** ** 0.6 ***** ** 0.3 ******** 0.0 -------- Multilevel CGCACTGC consensus A GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCASWGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:12668163-12668283 40 8.09e-07 ACTTATTTCT CGCAGTGC ATGTGCGTGT chr3R:16801042-16801162 37 8.09e-07 CAGGCTTAGG CGCAGTGC ACCTGGAAAA chr3L:19191994-19192114 7 1.63e-06 TTTGTT CGCACTGC CTTTATGTAC chrX:3288933-3289053 9 3.87e-06 GCCATGGT CGCACCGC ACCTTAAATA chrX:19225012-19225132 39 7.42e-06 TTATTTTTAA CGCTCAGC ATTTTGGGAA chr2R:22384525-22384645 85 7.42e-06 TGATTGAAGT CGCTCAGC TTAGAATTTT chr3L:7953046-7953166 38 7.42e-06 TTCTATCCTT CGCTCAGC AGCTTTTCGA chr2R:13560806-13560926 3 9.94e-06 CG CACAGTGC GTGAAGAAAG chr2R:13475073-13475193 57 1.66e-05 CGACTTTTCT TGCAGTGC CTGTGTTTAC chr3L:6085303-6085423 64 1.66e-05 TCTACAAACT CACAGAGC TCTTAAAatt chr2L:11931867-11931987 88 1.66e-05 GACAAAAGCA CACAGAGC AGACCGGAGT chr2L:10752324-10752444 40 2.18e-05 CAAATGGGTC CACAGCGC GTTAGTCAGC chr3L:20006852-20006972 78 2.18e-05 ATGTAAATGC TGCACTGC TATGTAAAAA chr2R:10437518-10437638 42 2.18e-05 TGGGAGAATA TGCACTGC AATTGTTATG chrX:3024673-3024793 29 3.31e-05 TGCCAATTGA AGCACTGC AACCACTTTG chr3L:15494361-15494481 110 3.53e-05 CAAACAAAAA AGCAGAGC TAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCASWGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:12668163-12668283 8.1e-07 39_[+2]_73 chr3R:16801042-16801162 8.1e-07 36_[+2]_76 chr3L:19191994-19192114 1.6e-06 6_[+2]_106 chrX:3288933-3289053 3.9e-06 8_[+2]_104 chrX:19225012-19225132 7.4e-06 38_[+2]_74 chr2R:22384525-22384645 7.4e-06 84_[+2]_28 chr3L:7953046-7953166 7.4e-06 37_[+2]_75 chr2R:13560806-13560926 9.9e-06 2_[+2]_110 chr2R:13475073-13475193 1.7e-05 56_[+2]_56 chr3L:6085303-6085423 1.7e-05 63_[+2]_49 chr2L:11931867-11931987 1.7e-05 87_[+2]_25 chr2L:10752324-10752444 2.2e-05 39_[+2]_73 chr3L:20006852-20006972 2.2e-05 77_[+2]_35 chr2R:10437518-10437638 2.2e-05 41_[+2]_71 chrX:3024673-3024793 3.3e-05 28_[+2]_84 chr3L:15494361-15494481 3.5e-05 109_[+2]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCASWGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCASWGC width=8 seqs=16 chr3L:12668163-12668283 ( 40) CGCAGTGC 1 chr3R:16801042-16801162 ( 37) CGCAGTGC 1 chr3L:19191994-19192114 ( 7) CGCACTGC 1 chrX:3288933-3289053 ( 9) CGCACCGC 1 chrX:19225012-19225132 ( 39) CGCTCAGC 1 chr2R:22384525-22384645 ( 85) CGCTCAGC 1 chr3L:7953046-7953166 ( 38) CGCTCAGC 1 chr2R:13560806-13560926 ( 3) CACAGTGC 1 chr2R:13475073-13475193 ( 57) TGCAGTGC 1 chr3L:6085303-6085423 ( 64) CACAGAGC 1 chr2L:11931867-11931987 ( 88) CACAGAGC 1 chr2L:10752324-10752444 ( 40) CACAGCGC 1 chr3L:20006852-20006972 ( 78) TGCACTGC 1 chr2R:10437518-10437638 ( 42) TGCACTGC 1 chrX:3024673-3024793 ( 29) AGCACTGC 1 chr3L:15494361-15494481 ( 110) AGCAGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCASWGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 1.1e+002 -155 234 -1064 -96 -55 -1064 249 -1064 -1064 288 -1064 -1064 115 -1064 -1064 -96 -1064 188 190 -1064 4 -12 -1064 45 -1064 -1064 290 -1064 -1064 288 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCASWGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.1e+002 0.125000 0.687500 0.000000 0.187500 0.250000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.812500 0.000000 0.000000 0.187500 0.000000 0.500000 0.500000 0.000000 0.375000 0.125000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCASWGC MEME-2 regular expression -------------------------------------------------------------------------------- C[GA]CA[CG][TA]GC -------------------------------------------------------------------------------- Time 13.99 secs. ******************************************************************************** ******************************************************************************** MOTIF STGAGCGS MEME-3 width = 8 sites = 10 llr = 110 E-value = 2.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif STGAGCGS MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1:8:::: pos.-specific C 42:1:a:6 probability G 6:a18:a4 matrix T :7::2::: bits 2.9 * ** 2.6 * ** 2.3 * ** 2.0 * * **** Relative 1.7 * * **** Entropy 1.5 * * **** (15.8 bits) 1.2 * * **** 0.9 * ****** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GTGAGCGC consensus CC T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGAGCGS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:15677786-15677906 75 1.09e-06 TATATTTGCT GCGAGCGC ATGATTAATT chr3L:12668163-12668283 99 2.69e-06 AACGCGCAAA CTGAGCGC CAGAGGTCGC chr2L:10276622-10276742 68 2.69e-06 attGTTTACA GTGAGCGG TGTTtacata chr3R:16215104-16215224 94 2.69e-06 GGAATACTGA CTGAGCGC GCCAAAAAGT chr2L:18151879-18151999 96 3.28e-06 TATGCAAACA GCGAGCGG TTCAGGGAAT chr2L:7957326-7957446 43 6.36e-06 TTTTTTCAGT CTGCGCGC CCAGTGTCAG chr2R:15034915-15035035 6 7.38e-06 CGAAG CTGGGCGG GAATTATCTA chr4:1218869-1218989 57 1.00e-05 ACATTCTTCA GAGAGCGG GCATAAGTTT chr3R:14284536-14284656 49 1.22e-05 CACACCTACA GTGATCGC TCGCTAAGCG chr2L:20939750-20939870 13 1.22e-05 TATTCAACGT GTGATCGC AAAGAATAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGAGCGS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:15677786-15677906 1.1e-06 74_[+3]_38 chr3L:12668163-12668283 2.7e-06 98_[+3]_14 chr2L:10276622-10276742 2.7e-06 67_[+3]_45 chr3R:16215104-16215224 2.7e-06 93_[+3]_19 chr2L:18151879-18151999 3.3e-06 95_[+3]_17 chr2L:7957326-7957446 6.4e-06 42_[+3]_70 chr2R:15034915-15035035 7.4e-06 5_[+3]_107 chr4:1218869-1218989 1e-05 56_[+3]_56 chr3R:14284536-14284656 1.2e-05 48_[+3]_64 chr2L:20939750-20939870 1.2e-05 12_[+3]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGAGCGS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STGAGCGS width=8 seqs=10 chr3R:15677786-15677906 ( 75) GCGAGCGC 1 chr3L:12668163-12668283 ( 99) CTGAGCGC 1 chr2L:10276622-10276742 ( 68) GTGAGCGG 1 chr3R:16215104-16215224 ( 94) CTGAGCGC 1 chr2L:18151879-18151999 ( 96) GCGAGCGG 1 chr2L:7957326-7957446 ( 43) CTGCGCGC 1 chr2R:15034915-15035035 ( 6) CTGGGCGG 1 chr4:1218869-1218989 ( 57) GAGAGCGG 1 chr3R:14284536-14284656 ( 49) GTGATCGC 1 chr2L:20939750-20939870 ( 13) GTGATCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGAGCGS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4072 E= 2.4e+002 -997 156 216 -997 -187 56 -997 94 -997 -997 290 -997 113 -44 -42 -997 -997 -997 258 -87 -997 288 -997 -997 -997 -997 290 -997 -997 214 158 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGAGCGS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.4e+002 0.000000 0.400000 0.600000 0.000000 0.100000 0.200000 0.000000 0.700000 0.000000 0.000000 1.000000 0.000000 0.800000 0.100000 0.100000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.400000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGAGCGS MEME-3 regular expression -------------------------------------------------------------------------------- [GC][TC]GA[GT]CG[CG] -------------------------------------------------------------------------------- Time 20.34 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGCSSG MEME-4 width = 8 sites = 2 llr = 27 E-value = 5.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGCSSG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::a55: probability G a:aa:55a matrix T :a:::::: bits 2.9 * *** * 2.6 * *** * 2.3 * *** * 2.0 * ****** Relative 1.7 * ****** Entropy 1.5 ******** (19.7 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GTGGCCCG consensus GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCSSG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12547745-12547865 108 8.71e-07 TCCACTGTAT GTGGCGCG TGCCT chr3L:17937412-17937532 11 8.71e-07 TTGAAGAATT GTGGCCGG TAAAGTGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCSSG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12547745-12547865 8.7e-07 107_[+4]_5 chr3L:17937412-17937532 8.7e-07 10_[+4]_102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCSSG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGCSSG width=8 seqs=2 chr2R:12547745-12547865 ( 108) GTGGCGCG 1 chr3L:17937412-17937532 ( 11) GTGGCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCSSG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 5.3e+003 -765 -765 290 -765 -765 -765 -765 145 -765 -765 290 -765 -765 -765 290 -765 -765 288 -765 -765 -765 188 190 -765 -765 188 190 -765 -765 -765 290 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCSSG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.3e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCSSG MEME-4 regular expression -------------------------------------------------------------------------------- GTGGC[CG][CG]G -------------------------------------------------------------------------------- Time 26.64 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCGTSG MEME-5 width = 8 sites = 2 llr = 29 E-value = 5.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCGTSG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:a::5: probability G ::a:a:5a matrix T :::::a:: bits 2.9 ***** * 2.6 ***** * 2.3 ***** * 2.0 ***** ** Relative 1.7 ***** ** Entropy 1.5 ******** (20.7 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCGCGTCG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGTSG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22384525-22384645 8 2.96e-07 TAATTCC CCGCGTGG CTTTCATCAC chr2R:6157682-6157802 62 5.96e-07 ATCAAATCGG CCGCGTCG TATTTGTCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGTSG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22384525-22384645 3e-07 7_[+5]_105 chr2R:6157682-6157802 6e-07 61_[+5]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGTSG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCGTSG width=8 seqs=2 chr2R:22384525-22384645 ( 8) CCGCGTGG 1 chr2R:6157682-6157802 ( 62) CCGCGTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGTSG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 5.4e+003 -765 288 -765 -765 -765 288 -765 -765 -765 -765 290 -765 -765 288 -765 -765 -765 -765 290 -765 -765 -765 -765 145 -765 188 190 -765 -765 -765 290 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGTSG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.4e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGTSG MEME-5 regular expression -------------------------------------------------------------------------------- CCGCGT[CG]G -------------------------------------------------------------------------------- Time 32.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8295488-8295608 9.65e-03 1_[+1(2.62e-06)]_111 chr3L:18795513-18795633 1.22e-01 120 chrX:9120160-9120280 9.60e-01 120 chr3L:18766299-18766419 6.51e-01 120 chr3R:24206105-24206225 6.66e-01 120 chr2L:16548516-16548636 1.00e+00 120 chr3L:7009463-7009583 5.59e-04 29_[+1(6.01e-06)]_83 chr2L:11931666-11931786 9.94e-01 120 chr3L:7811042-7811162 6.88e-01 120 chrX:11841838-11841958 9.87e-01 120 chr4:1218869-1218989 2.12e-03 56_[+3(1.00e-05)]_56 chr2R:14021937-14022057 1.00e+00 120 chrX:16815336-16815456 8.65e-02 42_[+5(6.90e-05)]_70 chr2L:20939750-20939870 3.78e-02 12_[+3(1.22e-05)]_100 chr3L:6807636-6807756 6.08e-01 120 chr2R:6219944-6220064 7.48e-01 120 chr3L:12717708-12717828 9.80e-01 120 chr3L:15494361-15494481 1.02e-01 109_[+2(3.53e-05)]_3 chrX:17716895-17717015 9.99e-01 120 chr3L:11444303-11444423 8.93e-01 120 chr3L:8423340-8423460 6.93e-01 120 chr3R:16553619-16553739 8.11e-01 120 chr3L:4534066-4534186 4.48e-01 120 chr2R:9903557-9903677 1.00e+00 120 chr2L:20823262-20823382 1.00e-01 120 chr3R:6241320-6241440 6.88e-01 120 chr2L:14123712-14123832 1.15e-01 120 chrX:15076464-15076584 9.03e-01 120 chr2L:3092664-3092784 2.51e-02 120 chr3R:24580590-24580710 9.34e-01 120 chr2L:19463549-19463669 7.70e-01 120 chr3L:8076326-8076446 7.98e-03 75_[+1(3.81e-06)]_37 chr3R:11663616-11663736 9.79e-01 120 chr2R:8860072-8860192 3.07e-02 57_[+4(4.71e-05)]_55 chr3L:4720636-4720756 9.96e-01 120 chr3L:11467164-11467284 1.00e+00 120 chr3L:15775590-15775710 3.47e-01 120 chr3R:24906150-24906270 1.00e+00 120 chrX:19158618-19158738 9.74e-01 120 chrX:17694981-17695101 3.60e-01 120 chr3L:10786094-10786214 5.49e-01 120 chr2L:10689535-10689655 1.05e-01 120 chrX:19884340-19884460 8.31e-01 120 chr3L:5280169-5280289 6.70e-01 120 chr3R:13553213-13553333 3.18e-01 120 chrX:13208167-13208287 1.00e+00 120 chr3R:29524512-29524632 8.65e-02 120 chr3L:5809227-5809347 7.41e-01 120 chr3L:9468422-9468542 7.36e-01 120 chr2R:7477430-7477550 9.12e-02 120 chr2R:7879110-7879230 9.73e-01 120 chr3L:7962117-7962237 7.06e-01 120 chr3L:7953046-7953166 3.34e-03 37_[+2(7.42e-06)]_75 chr2R:11176296-11176416 1.63e-01 19_[+3(6.28e-05)]_93 chr3R:19467611-19467731 2.14e-03 63_[+5(6.90e-05)]_49 chr2R:17718975-17719095 8.90e-01 120 chrX:6067702-6067822 4.66e-05 102_[+1(1.81e-06)]_1_[+5(4.89e-05)]_\ 1 chr3R:16241922-16242042 9.33e-01 120 chr3R:6352179-6352299 8.41e-01 120 chr2L:12049185-12049305 6.23e-01 120 chr2L:21263942-21264062 6.67e-01 120 chr3L:16917526-16917646 7.09e-01 120 chr3L:18795717-18795837 3.96e-02 120 chr3L:16870778-16870898 7.49e-01 120 chrX:17712697-17712817 8.20e-01 120 chr2R:18771146-18771266 8.98e-01 120 chr3L:18273293-18273413 2.07e-01 120 chr3L:1083511-1083631 5.15e-02 120 chrX:11846442-11846562 7.68e-01 120 chr2L:5445934-5446054 1.00e+00 120 chr2R:12951467-12951587 9.91e-01 120 chr3L:15693157-15693277 1.10e-01 27_[+3(3.05e-05)]_85 chr2L:16869061-16869181 6.50e-01 120 chr3L:10849681-10849801 7.42e-01 120 chr2R:11803386-11803506 1.93e-02 78_[+1(2.67e-05)]_34 chr2R:12229629-12229749 5.07e-01 120 chr3L:4384178-4384298 3.19e-01 120 chr2L:11931867-11931987 7.61e-05 87_[+2(1.66e-05)]_25 chr3L:18102189-18102309 8.33e-01 120 chrX:16813393-16813513 8.22e-01 120 chr3R:16213955-16214075 9.93e-01 120 chr2R:14305241-14305361 9.77e-01 120 chr3R:13804099-13804219 9.19e-01 120 chr3R:20001697-20001817 4.38e-02 120 chrX:15121940-15122060 1.00e+00 120 chr3L:11107602-11107722 3.44e-01 120 chr3L:7592252-7592372 6.48e-01 120 chr3R:21589584-21589704 1.40e-02 120 chr2L:19019235-19019355 2.48e-02 120 chr3R:6482214-6482334 8.87e-01 120 chr3R:21348031-21348151 7.03e-02 120 chr3L:10893505-10893625 9.47e-01 120 chr2R:6157682-6157802 5.70e-04 61_[+5(5.96e-07)]_51 chrX:3288933-3289053 1.83e-04 8_[+2(3.87e-06)]_104 chr3L:4286868-4286988 8.77e-02 120 chr3L:19191994-19192114 6.51e-07 6_[+2(1.63e-06)]_70_[+1(4.91e-06)]_\ 28 chr3L:19073995-19074115 9.24e-01 120 chr3L:6885811-6885931 1.00e+00 120 chr3R:18804647-18804767 5.99e-01 120 chr3L:11443561-11443681 9.98e-01 120 chr3R:13907817-13907937 8.86e-01 120 chr3L:4355343-4355463 7.64e-01 120 chr3R:11869788-11869908 9.99e-01 120 chrX:23071297-23071417 8.02e-01 120 chr2R:14485429-14485549 1.83e-01 120 chr2R:14915153-14915273 3.67e-01 120 chr3R:16215104-16215224 4.97e-04 93_[+3(2.69e-06)]_19 chr3L:2582058-2582178 2.16e-01 120 chr2R:23739395-23739515 3.80e-01 120 chr2R:10437518-10437638 1.63e-01 41_[+2(2.18e-05)]_71 chrX:15364584-15364704 9.37e-01 120 chr2L:7966174-7966294 9.52e-01 120 chr3L:21056323-21056443 1.17e-01 120 chrX:17692986-17693106 6.71e-04 120 chr3L:17226496-17226616 1.70e-02 36_[+4(5.26e-05)]_76 chr2R:14698874-14698994 9.53e-02 120 chr3R:13549674-13549794 9.76e-01 120 chr3R:14002326-14002446 9.33e-01 120 chr2L:3569981-3570101 6.79e-01 120 chr3L:22909981-22910101 6.76e-01 120 chr2L:9963894-9964014 1.36e-03 82_[+1(8.77e-06)]_30 chr2L:3805337-3805457 9.99e-01 120 chr3R:20950195-20950315 6.94e-01 120 chr2R:10681456-10681576 6.58e-01 120 chrX:13226595-13226715 9.92e-01 120 chr2R:15919888-15920008 6.31e-01 120 chr3R:21837143-21837263 9.99e-01 120 chr2R:9684183-9684303 2.90e-01 120 chr3R:18508433-18508553 1.00e+00 120 chr2L:14537560-14537680 4.19e-01 120 chr3R:16801042-16801162 3.24e-05 36_[+2(8.09e-07)]_76 chr2L:6948942-6949062 9.79e-01 120 chr3L:15532875-15532995 3.48e-01 120 chr3L:10428964-10429084 6.35e-01 120 chr3L:21859770-21859890 8.49e-01 120 chr2R:11176499-11176619 4.39e-01 120 chrX:20644045-20644165 3.60e-01 120 chr3R:20829620-20829740 9.80e-01 120 chr3L:3059390-3059510 1.08e-01 120 chr2R:22384525-22384645 7.86e-07 7_[+5(2.96e-07)]_69_[+2(7.42e-06)]_\ 28 chr3L:6157693-6157813 9.81e-01 120 chr3R:27919505-27919625 2.83e-01 120 chr3L:16697246-16697366 1.51e-01 120 chr2L:18150945-18151065 1.00e+00 120 chr3L:3485211-3485331 9.36e-01 120 chrX:3745321-3745441 9.93e-01 120 chr3R:19093262-19093382 9.94e-01 120 chrX:12225457-12225577 8.14e-01 120 chr2R:14971188-14971308 7.62e-01 120 chr3R:18167455-18167575 9.15e-01 120 chr2R:13560806-13560926 1.17e-02 2_[+2(9.94e-06)]_110 chrX:7995238-7995358 7.80e-02 120 chr3L:9505453-9505573 9.89e-01 120 chr3R:9494407-9494527 7.34e-01 120 chr3L:6797575-6797695 7.46e-01 120 chrX:3024673-3024793 2.70e-04 2_[+1(1.42e-05)]_18_[+2(3.31e-05)]_\ 68_[+1(5.26e-05)]_8 chr3L:15034560-15034680 9.32e-01 120 chr3L:16657101-16657221 6.93e-01 120 chr2R:13996734-13996854 7.53e-02 87_[+3(9.36e-05)]_25 chr2L:10276622-10276742 1.79e-03 67_[+3(2.69e-06)]_45 chrX:19225012-19225132 7.28e-02 38_[+2(7.42e-06)]_74 chr2L:18151879-18151999 3.25e-04 95_[+3(3.28e-06)]_17 chr3R:12562161-12562281 8.59e-01 120 chr3R:17955858-17955978 1.35e-01 5_[+2(6.44e-05)]_107 chr3R:6241522-6241642 6.36e-01 120 chr3R:6352935-6353055 1.63e-01 120 chr2L:20823461-20823581 2.82e-01 120 chrX:3455562-3455682 9.36e-01 120 chrX:12937963-12938083 4.79e-01 120 chr3L:15693356-15693476 9.59e-01 120 chr3L:9505652-9505772 2.62e-02 120 chr3L:14328488-14328608 9.63e-01 120 chr2R:8051518-8051638 2.19e-01 120 chr3R:15677786-15677906 5.40e-06 74_[+3(1.09e-06)]_38 chr3L:11291628-11291748 9.39e-01 120 chr2R:7054288-7054408 1.34e-01 120 chr2L:3100996-3101116 4.25e-02 120 chr3R:14598099-14598219 1.91e-01 120 chr3R:16336470-16336590 2.53e-01 120 chrX:8125360-8125480 9.40e-01 120 chrX:11848846-11848966 6.26e-01 120 chr2R:13015292-13015412 1.97e-02 120 chr3R:16801241-16801361 9.70e-01 120 chr3R:6791285-6791405 1.00e+00 120 chr4:1199225-1199345 8.64e-01 120 chr3L:11336506-11336626 2.37e-02 120 chr3R:31688785-31688905 8.14e-01 120 chrX:20631238-20631358 6.25e-01 120 chr2R:24293622-24293742 2.35e-02 120 chr3R:5413070-5413190 4.09e-01 120 chr3R:18785916-18786036 2.43e-01 120 chr3L:10337741-10337861 6.09e-01 120 chr3R:22494647-22494767 3.99e-01 120 chr3R:15129054-15129174 5.50e-02 120 chr2R:12729335-12729455 1.39e-04 89_[+1(2.96e-07)]_23 chr2R:10854365-10854485 6.40e-01 120 chr3L:17113346-17113466 7.85e-01 120 chr3R:20950394-20950514 7.47e-02 120 chrX:18524976-18525096 9.33e-01 120 chr2R:15034915-15035035 5.73e-05 5_[+3(7.38e-06)]_107 chr3L:3380604-3380724 1.27e-01 120 chr3L:10767280-10767400 1.00e+00 120 chr3R:4732400-4732520 3.11e-01 120 chr3L:17937412-17937532 1.61e-07 10_[+4(8.71e-07)]_86_[+1(4.05e-07)]_\ 8 chrX:19166502-19166622 2.72e-01 120 chr3R:13713683-13713803 9.79e-01 120 chr3L:11408873-11408993 7.52e-04 28_[+3(9.83e-05)]_84 chrX:14634816-14634936 9.64e-01 120 chr3L:3788976-3789096 9.07e-01 120 chr3L:7368019-7368139 1.21e-01 120 chr3L:517350-517470 7.07e-01 120 chr2L:10249819-10249939 2.02e-01 120 chrX:3019759-3019879 4.15e-01 120 chr3L:6085303-6085423 3.72e-02 63_[+2(1.66e-05)]_49 chr2R:12727670-12727790 9.98e-01 120 chr3R:9344898-9345018 5.65e-01 120 chr3R:28586980-28587100 3.65e-02 120 chr3L:14172612-14172732 8.79e-02 120 chr2R:14576120-14576240 3.13e-02 120 chr3L:13403263-13403383 3.20e-01 120 chr2L:20204673-20204793 5.50e-01 120 chr3R:14284536-14284656 2.86e-03 48_[+3(1.22e-05)]_64 chr3L:15588568-15588688 5.03e-01 120 chrX:17780407-17780527 3.89e-01 120 chr2L:7150937-7151057 5.72e-01 120 chr3L:14363268-14363388 3.82e-01 120 chr2L:9493485-9493605 9.92e-01 120 chr3L:12668163-12668283 3.47e-09 39_[+2(8.09e-07)]_33_[+5(1.46e-05)]_\ 10_[+3(2.69e-06)]_2_[+3(4.42e-05)]_4 chr3R:28327293-28327413 9.68e-01 120 chrX:12004602-12004722 5.75e-01 120 chr3L:20006852-20006972 1.01e-02 77_[+2(2.18e-05)]_35 chr2L:14405121-14405241 2.97e-02 120 chr3R:4311131-4311251 5.24e-01 120 chrX:9899864-9899984 1.00e+00 120 chr2R:13475073-13475193 4.20e-02 56_[+2(1.66e-05)]_56 chrX:16854896-16855016 1.00e+00 120 chr2R:12547745-12547865 2.17e-05 107_[+4(8.71e-07)]_5 chr3R:21594503-21594623 4.32e-01 120 chrX:14743939-14744059 8.98e-01 120 chr2L:7957326-7957446 1.71e-05 42_[+3(6.36e-06)]_70 chr3L:10951237-10951357 5.15e-01 120 chr3R:14300065-14300185 9.27e-05 10_[+1(1.21e-06)]_102 chrX:18004381-18004501 9.51e-01 120 chr2L:2905133-2905253 1.00e+00 120 chr2L:10752324-10752444 5.04e-05 39_[+2(2.18e-05)]_73 chr3R:21420015-21420135 7.49e-01 120 chr3L:11298488-11298608 9.91e-01 120 chr2L:14234475-14234595 6.80e-01 120 chr3R:23445560-23445680 8.40e-01 120 chr2L:6472445-6472565 8.54e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************