******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Snoo.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:7909593-7909713 1.0000 120 chr2R:15226027-15226147 1.0000 120 chr2R:6149433-6149553 1.0000 120 chr3L:16174167-16174287 1.0000 120 chr3L:69441-69561 1.0000 120 chr2L:8846925-8847045 1.0000 120 chr3L:9509183-9509303 1.0000 120 chr3L:18037985-18038105 1.0000 120 chr3L:3242238-3242358 1.0000 120 chr2L:4588929-4589049 1.0000 120 chr3L:16211524-16211644 1.0000 120 chr3R:31943832-31943952 1.0000 120 chr3L:11151108-11151228 1.0000 120 chr3L:17939792-17939912 1.0000 120 chr3L:9380359-9380479 1.0000 120 chr3L:16178581-16178701 1.0000 120 chr3L:14456086-14456206 1.0000 120 chrX:13936364-13936484 1.0000 120 chr3L:12915579-12915699 1.0000 120 chr3R:17202522-17202642 1.0000 120 chrX:1574440-1574560 1.0000 120 chr3L:16165508-16165628 1.0000 120 chr2R:15483738-15483858 1.0000 120 chr2L:7909858-7909978 1.0000 120 chr3R:15588640-15588760 1.0000 120 chr3R:21608522-21608642 1.0000 120 chr3R:5363579-5363699 1.0000 120 chr3R:21649950-21650070 1.0000 120 chr2L:18561906-18562026 1.0000 120 chr2L:7573599-7573719 1.0000 120 chr3L:1458140-1458260 1.0000 120 chr2L:14247967-14248087 1.0000 120 chr2R:15611064-15611184 1.0000 120 chr2R:11595236-11595356 1.0000 120 chr3R:21704577-21704697 1.0000 120 chrX:2334733-2334853 1.0000 120 chr3L:16145359-16145479 1.0000 120 chr3R:19064227-19064347 1.0000 120 chr2R:19620114-19620234 1.0000 120 chr3R:23496584-23496704 1.0000 120 chr3R:30864092-30864212 1.0000 120 chr3R:29762493-29762613 1.0000 120 chr3L:10928832-10928952 1.0000 120 chr3R:26859347-26859467 1.0000 120 chr3R:30295155-30295275 1.0000 120 chr2R:18610414-18610534 1.0000 120 chr2R:7473825-7473945 1.0000 120 chr3R:25759586-25759706 1.0000 120 chr2L:3341711-3341831 1.0000 120 chrX:17493757-17493877 1.0000 120 chr3R:24614256-24614376 1.0000 120 chr3R:9913604-9913724 1.0000 120 chr3R:13816388-13816508 1.0000 120 chr2L:10791411-10791531 1.0000 120 chr3L:12016312-12016432 1.0000 120 chr2L:7574474-7574594 1.0000 120 chrX:20244489-20244609 1.0000 120 chr3R:16082567-16082687 1.0000 120 chr2L:21020187-21020307 1.0000 120 chr3L:16490036-16490156 1.0000 120 chr2L:20908113-20908233 1.0000 120 chrX:18273369-18273489 1.0000 120 chr2L:12513894-12514014 1.0000 120 chr2L:5429272-5429392 1.0000 120 chr3R:11456730-11456850 1.0000 120 chr3L:16195604-16195724 1.0000 120 chr2L:7619373-7619493 1.0000 120 chr3L:18198950-18199070 1.0000 120 chr3L:6369758-6369878 1.0000 120 chr3L:761845-761965 1.0000 120 chrX:5608661-5608781 1.0000 120 chr2R:23225175-23225295 1.0000 120 chr2R:20646225-20646345 1.0000 120 chr2L:18466298-18466418 1.0000 120 chr3L:8371022-8371142 1.0000 120 chr3L:9033687-9033807 1.0000 120 chrX:6775731-6775851 1.0000 120 chr3R:21599710-21599830 1.0000 120 chr3R:16154382-16154502 1.0000 120 chr2R:10237801-10237921 1.0000 120 chr3L:15209120-15209240 1.0000 120 chr3L:2830008-2830128 1.0000 120 chr3L:727337-727457 1.0000 120 chr2L:17750311-17750431 1.0000 120 chrX:3407961-3408081 1.0000 120 chr3R:30843203-30843323 1.0000 120 chr2L:15385473-15385593 1.0000 120 chr2R:15497439-15497559 1.0000 120 chr3L:19650749-19650869 1.0000 120 chr2R:22316580-22316700 1.0000 120 chr2L:17268316-17268436 1.0000 120 chr2R:14922937-14923057 1.0000 120 chrX:22479511-22479631 1.0000 120 chr2R:10772011-10772131 1.0000 120 chrX:4435107-4435227 1.0000 120 chr2R:15513530-15513650 1.0000 120 chr2L:7608222-7608342 1.0000 120 chr2R:6148290-6148410 1.0000 120 chr2R:17439604-17439724 1.0000 120 chr3L:16211726-16211846 1.0000 120 chrX:18256650-18256770 1.0000 120 chr3L:8358339-8358459 1.0000 120 chr2R:19616286-19616406 1.0000 120 chrX:21519366-21519486 1.0000 120 chr2R:5781947-5782067 1.0000 120 chrX:12596548-12596668 1.0000 120 chr3L:18754037-18754157 1.0000 120 chr3L:1090413-1090533 1.0000 120 chr2L:11326513-11326633 1.0000 120 chr2R:10057941-10058061 1.0000 120 chr3L:1859688-1859808 1.0000 120 chr3L:12090433-12090553 1.0000 120 chrX:6984041-6984161 1.0000 120 chr3R:13793435-13793555 1.0000 120 chrX:17113505-17113625 1.0000 120 chr3R:10881928-10882048 1.0000 120 chr3L:13497856-13497976 1.0000 120 chr2L:7897358-7897478 1.0000 120 chr3R:8029719-8029839 1.0000 120 chr3R:4174624-4174744 1.0000 120 chr2R:21543351-21543471 1.0000 120 chr2L:7973643-7973763 1.0000 120 chrX:1612050-1612170 1.0000 120 chr2R:9065351-9065471 1.0000 120 chrX:18540368-18540488 1.0000 120 chr3L:2833768-2833888 1.0000 120 chr3L:18061829-18061949 1.0000 120 chr2L:7422544-7422664 1.0000 120 chr2R:22144343-22144463 1.0000 120 chr3R:21921575-21921695 1.0000 120 chrX:3147137-3147257 1.0000 120 chr2L:20716162-20716282 1.0000 120 chr2R:20136873-20136993 1.0000 120 chrX:13988947-13989067 1.0000 120 chr3L:18137297-18137417 1.0000 120 chr3L:11297652-11297772 1.0000 120 chr3L:776319-776439 1.0000 120 chr3L:9675585-9675705 1.0000 120 chrX:19878843-19878963 1.0000 120 chr3R:30285046-30285166 1.0000 120 chr3R:24768112-24768232 1.0000 120 chr2R:19187320-19187440 1.0000 120 chr2R:17452002-17452122 1.0000 120 chrX:8255025-8255145 1.0000 120 chr3R:29210760-29210880 1.0000 120 chrX:13990585-13990705 1.0000 120 chr3R:8272716-8272836 1.0000 120 chr3R:4961538-4961658 1.0000 120 chr3L:10786068-10786188 1.0000 120 chr3R:27205126-27205246 1.0000 120 chrX:1972291-1972411 1.0000 120 chrX:18272470-18272590 1.0000 120 chr3R:11974711-11974831 1.0000 120 chrX:10104623-10104743 1.0000 120 chr3R:31688883-31689003 1.0000 120 chr3L:2873238-2873358 1.0000 120 chr2R:18531853-18531973 1.0000 120 chr3R:29778232-29778352 1.0000 120 chr2L:12013934-12014054 1.0000 120 chr2L:11328495-11328615 1.0000 120 chr2R:7246630-7246750 1.0000 120 chr2R:23022653-23022773 1.0000 120 chr3L:785883-786003 1.0000 120 chrX:5026162-5026282 1.0000 120 chr3L:8368804-8368924 1.0000 120 chrX:18834542-18834662 1.0000 120 chrX:18929518-18929638 1.0000 120 chr3L:15258467-15258587 1.0000 120 chrX:5025366-5025486 1.0000 120 chr3L:15174252-15174372 1.0000 120 chr3L:15209323-15209443 1.0000 120 chrX:768065-768185 1.0000 120 chr3L:5863103-5863223 1.0000 120 chr2L:7879661-7879781 1.0000 120 chrX:10324851-10324971 1.0000 120 chr2L:17749087-17749207 1.0000 120 chr3R:23201185-23201305 1.0000 120 chr2L:10616047-10616167 1.0000 120 chrX:13278237-13278357 1.0000 120 chr3R:23147743-23147863 1.0000 120 chr3L:14253577-14253697 1.0000 120 chr3R:22628036-22628156 1.0000 120 chr3L:6471970-6472090 1.0000 120 chr3L:1388255-1388375 1.0000 120 chr3R:18914093-18914213 1.0000 120 chr3R:31309026-31309146 1.0000 120 chr3R:30280449-30280569 1.0000 120 chr3L:11113447-11113567 1.0000 120 chr2L:423304-423424 1.0000 120 chr2L:16503029-16503149 1.0000 120 chrX:12760788-12760908 1.0000 120 chr2L:3554053-3554173 1.0000 120 chr2L:11222218-11222338 1.0000 120 chrX:17551128-17551248 1.0000 120 chr3R:23508424-23508544 1.0000 120 chr2R:8322838-8322958 1.0000 120 chr2R:7093025-7093145 1.0000 120 chr3L:2835103-2835223 1.0000 120 chr3R:23486873-23486993 1.0000 120 chr3R:29786559-29786679 1.0000 120 chrX:19160059-19160179 1.0000 120 chr2L:9828999-9829119 1.0000 120 chr2L:7104706-7104826 1.0000 120 chr3R:27186122-27186242 1.0000 120 chr3R:6426398-6426518 1.0000 120 chrX:12015150-12015270 1.0000 120 chr2L:18628282-18628402 1.0000 120 chr2L:651015-651135 1.0000 120 chrX:361564-361684 1.0000 120 chr3L:20403655-20403775 1.0000 120 chr2L:18003621-18003741 1.0000 120 chr3R:29055852-29055972 1.0000 120 chrX:13993289-13993409 1.0000 120 chr3L:2553265-2553385 1.0000 120 chr3L:10675797-10675917 1.0000 120 chrX:13312340-13312460 1.0000 120 chr3R:31991934-31992054 1.0000 120 chr2L:2857935-2858055 1.0000 120 chr3R:11872820-11872940 1.0000 120 chrX:16930472-16930592 1.0000 120 chr3L:20549492-20549612 1.0000 120 chr2R:6556875-6556995 1.0000 120 chr3L:18241158-18241278 1.0000 120 chr3L:818540-818660 1.0000 120 chr3L:3343455-3343575 1.0000 120 chrX:6059271-6059391 1.0000 120 chrX:11925352-11925472 1.0000 120 chr3L:6220287-6220407 1.0000 120 chr3L:10352256-10352376 1.0000 120 chr3L:16204230-16204350 1.0000 120 chrX:9495968-9496088 1.0000 120 chr3L:17577817-17577937 1.0000 120 chr2L:20913030-20913150 1.0000 120 chrX:8063322-8063442 1.0000 120 chr2L:1412838-1412958 1.0000 120 chr3R:9934977-9935097 1.0000 120 chr3R:29254479-29254599 1.0000 120 chr3R:11947223-11947343 1.0000 120 chr2L:11358542-11358662 1.0000 120 chrX:7535014-7535134 1.0000 120 chr3R:6397856-6397976 1.0000 120 chr3R:13372121-13372241 1.0000 120 chr3R:10530718-10530838 1.0000 120 chr3L:6359314-6359434 1.0000 120 chr3L:1829648-1829768 1.0000 120 chr3L:2831794-2831914 1.0000 120 chr2R:19420630-19420750 1.0000 120 chr2L:4348703-4348823 1.0000 120 chrX:14953140-14953260 1.0000 120 chrX:19164903-19165023 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Snoo/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Snoo.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.32 C 0.184 G 0.184 T 0.312 Background letter frequencies (from file dataset with add-one prior applied): A 0.32 C 0.184 G 0.184 T 0.312 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGCCAGAC MEME-1 width = 8 sites = 32 llr = 296 E-value = 1.1e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCCAGAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 12::a:a: pos.-specific C 239a:::9 probability G 66:::a:1 matrix T 2:1::::: bits 2.4 * * 2.2 * * 2.0 ** * 1.7 ** *** Relative 1.5 ****** Entropy 1.2 ****** (13.3 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCCAGAC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:11974711-11974831 15 3.97e-06 AAAAAAGTGC GGCCAGAC GGTCAATTGA chr3L:16145359-16145479 80 3.97e-06 tgtgcgtgtg GGCCAGAC TCTCTGACGT chr2L:7573599-7573719 87 3.97e-06 ACAATTGATG GGCCAGAC AGACGCAGAA chr3R:5363579-5363699 113 3.97e-06 GAGAGATCTT GGCCAGAC chr3R:21608522-21608642 21 3.97e-06 GAGCGCTCTT GGCCAGAC GGCGGCCTTT chr3L:9380359-9380479 79 3.97e-06 TCCAGACGGG GGCCAGAC AGTGGAGACT chr3L:16195604-16195724 88 7.95e-06 GCAGAAACTC GCCCAGAC AGCGATCCCA chr3R:24614256-24614376 18 7.95e-06 TGCCCAGATA GCCCAGAC TGCTGCTCAT chr2L:18561906-18562026 88 7.95e-06 GAGAAGGGCC GCCCAGAC AGCTTATCGC chr2R:15226027-15226147 37 7.95e-06 GAGGAAGAAG GCCCAGAC GCTCCACCAG chr3R:10881928-10882048 80 1.19e-05 ACTTTCTTTT CGCCAGAC TTGTAATAGC chr3L:9509183-9509303 70 1.19e-05 ACTAGACATT CGCCAGAC AACAAACGTG chr2R:6149433-6149553 74 1.19e-05 GCCCGCGCAC CGCCAGAC ATATCCCCAA chr3L:5863103-5863223 78 1.88e-05 ATATTTCAAC GACCAGAC TTTCCTTTAT chr2R:18531853-18531973 88 1.88e-05 ACGATACCAC GACCAGAC TACCTGCTCT chr2L:7422544-7422664 77 1.88e-05 GAGGTGTGCA GACCAGAC GGGTTGGTTT chr2L:8846925-8847045 104 1.88e-05 AGTCTGTGCC GACCAGAC ACCAGACAC chr3R:23508424-23508544 26 2.56e-05 GCCTTTACGA TGCCAGAC TTtataatat chr3R:30285046-30285166 69 2.56e-05 GTCGAGCAGC TGCCAGAC ACAAAAATAA chr2L:4348703-4348823 47 4.04e-05 TCCCCAAATA AGCCAGAC CAAACTAAAA chr3R:27186122-27186242 50 4.04e-05 AGAACAGGCG AGCCAGAC GAAAGCCCCA chr2R:15513530-15513650 14 4.72e-05 TTTTTGTAAC TCCCAGAC TCGGTTTCTG chr3L:3242238-3242358 59 4.72e-05 GTCCCAAGGA TCCCAGAC GCAGGTTCAT chr2R:15611064-15611184 58 4.95e-05 CTCGTTGTCT GGCCCGAC GTCCGCCCCC chr2L:20908113-20908233 64 6.03e-05 TTAAAACCGG GCCCAGAG CGGTTGACCT chr3L:18754037-18754157 45 7.40e-05 TGGCTAAGTA GGTCAGAC GCCAAATGAA chr3L:16211524-16211644 60 8.57e-05 CAAAGTGGCA TACCAGAC AGTCTGACGC chr3L:2831794-2831914 17 8.97e-05 AAGAAAAATA CGCCAGAG AAAAAAACAG chr2L:11358542-11358662 100 8.97e-05 CTCTCTCTGC CGCCAGAG AGAGCGACTG chr3R:4174624-4174744 5 1.06e-04 TGTC GGCCAGAT TCATTTTCCA chr3R:23201185-23201305 27 1.12e-04 CTCAGCTCGT GCTCAGAC AATGAGTGCG chr3L:18037985-18038105 13 1.31e-04 TCCTGCTAAT AACCAGAC GAGTCCCTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:11974711-11974831 4e-06 14_[+1]_98 chr3L:16145359-16145479 4e-06 79_[+1]_33 chr2L:7573599-7573719 4e-06 86_[+1]_26 chr3R:5363579-5363699 4e-06 112_[+1] chr3R:21608522-21608642 4e-06 20_[+1]_92 chr3L:9380359-9380479 4e-06 78_[+1]_34 chr3L:16195604-16195724 7.9e-06 87_[+1]_25 chr3R:24614256-24614376 7.9e-06 17_[+1]_95 chr2L:18561906-18562026 7.9e-06 87_[+1]_25 chr2R:15226027-15226147 7.9e-06 36_[+1]_76 chr3R:10881928-10882048 1.2e-05 79_[+1]_33 chr3L:9509183-9509303 1.2e-05 69_[+1]_43 chr2R:6149433-6149553 1.2e-05 73_[+1]_39 chr3L:5863103-5863223 1.9e-05 77_[+1]_35 chr2R:18531853-18531973 1.9e-05 87_[+1]_25 chr2L:7422544-7422664 1.9e-05 76_[+1]_36 chr2L:8846925-8847045 1.9e-05 103_[+1]_9 chr3R:23508424-23508544 2.6e-05 25_[+1]_87 chr3R:30285046-30285166 2.6e-05 68_[+1]_44 chr2L:4348703-4348823 4e-05 46_[+1]_66 chr3R:27186122-27186242 4e-05 49_[+1]_63 chr2R:15513530-15513650 4.7e-05 13_[+1]_99 chr3L:3242238-3242358 4.7e-05 58_[+1]_54 chr2R:15611064-15611184 4.9e-05 57_[+1]_55 chr2L:20908113-20908233 6e-05 63_[+1]_49 chr3L:18754037-18754157 7.4e-05 44_[+1]_68 chr3L:16211524-16211644 8.6e-05 59_[+1]_53 chr3L:2831794-2831914 9e-05 16_[+1]_96 chr2L:11358542-11358662 9e-05 99_[+1]_13 chr3R:4174624-4174744 0.00011 4_[+1]_108 chr3R:23201185-23201305 0.00011 26_[+1]_86 chr3L:18037985-18038105 0.00013 12_[+1]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCCAGAC width=8 seqs=32 chr3R:11974711-11974831 ( 15) GGCCAGAC 1 chr3L:16145359-16145479 ( 80) GGCCAGAC 1 chr2L:7573599-7573719 ( 87) GGCCAGAC 1 chr3R:5363579-5363699 ( 113) GGCCAGAC 1 chr3R:21608522-21608642 ( 21) GGCCAGAC 1 chr3L:9380359-9380479 ( 79) GGCCAGAC 1 chr3L:16195604-16195724 ( 88) GCCCAGAC 1 chr3R:24614256-24614376 ( 18) GCCCAGAC 1 chr2L:18561906-18562026 ( 88) GCCCAGAC 1 chr2R:15226027-15226147 ( 37) GCCCAGAC 1 chr3R:10881928-10882048 ( 80) CGCCAGAC 1 chr3L:9509183-9509303 ( 70) CGCCAGAC 1 chr2R:6149433-6149553 ( 74) CGCCAGAC 1 chr3L:5863103-5863223 ( 78) GACCAGAC 1 chr2R:18531853-18531973 ( 88) GACCAGAC 1 chr2L:7422544-7422664 ( 77) GACCAGAC 1 chr2L:8846925-8847045 ( 104) GACCAGAC 1 chr3R:23508424-23508544 ( 26) TGCCAGAC 1 chr3R:30285046-30285166 ( 69) TGCCAGAC 1 chr2L:4348703-4348823 ( 47) AGCCAGAC 1 chr3R:27186122-27186242 ( 50) AGCCAGAC 1 chr2R:15513530-15513650 ( 14) TCCCAGAC 1 chr3L:3242238-3242358 ( 59) TCCCAGAC 1 chr2R:15611064-15611184 ( 58) GGCCCGAC 1 chr2L:20908113-20908233 ( 64) GCCCAGAG 1 chr3L:18754037-18754157 ( 45) GGTCAGAC 1 chr3L:16211524-16211644 ( 60) TACCAGAC 1 chr3L:2831794-2831914 ( 17) CGCCAGAG 1 chr2L:11358542-11358662 ( 100) CGCCAGAG 1 chr3R:4174624-4174744 ( 5) GGCCAGAT 1 chr3R:23201185-23201305 ( 27) GCTCAGAC 1 chr3L:18037985-18038105 ( 13) AACCAGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5219 E= 1.1e-006 -177 -24 169 -100 -77 44 161 -1164 -1164 235 -1164 -232 -1164 244 -1164 -1164 160 -256 -1164 -1164 -1164 -1164 244 -1164 165 -1164 -1164 -1164 -1164 225 -97 -332 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 1.1e-006 0.093750 0.156250 0.593750 0.156250 0.187500 0.250000 0.562500 0.000000 0.000000 0.937500 0.000000 0.062500 0.000000 1.000000 0.000000 0.000000 0.968750 0.031250 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.875000 0.093750 0.031250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGAC MEME-1 regular expression -------------------------------------------------------------------------------- G[GC]CCAGAC -------------------------------------------------------------------------------- Time 8.77 secs. ******************************************************************************** ******************************************************************************** MOTIF GGMGCGGG MEME-2 width = 8 sites = 24 llr = 227 E-value = 3.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGMGCGGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::4::::2 pos.-specific C 2:4:83:: probability G 8a2a27a8 matrix T ::1::::: bits 2.4 * 2.2 * * * 2.0 * * * 1.7 ** ** * Relative 1.5 ** ***** Entropy 1.2 ** ***** (13.6 bits) 1.0 ** ***** 0.7 ** ***** 0.5 ** ***** 0.2 ******** 0.0 -------- Multilevel GGAGCGGG consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMGCGGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7422544-7422664 97 1.31e-06 GTTGGTTTTG GGCGCGGG TTTAGCGGGG chr2R:17439604-17439724 47 1.31e-06 CAAAGGGGGC GGCGCGGG GAGGAGCATC chr2R:7473825-7473945 55 3.60e-06 GTCGTGAGCG GGAGCGGG TGGCACGGCA chr2R:15483738-15483858 87 3.60e-06 CTTTTTTTCG GGAGCGGG GGTATGTAAC chr2L:2857935-2858055 64 6.23e-06 AAACTAAATA GGGGCGGG CAATTGCTTA chr3L:16165508-16165628 78 6.23e-06 GGGGGTAAGG GGCGCCGG CAACCGCACG chr3L:14456086-14456206 17 6.23e-06 GGTCATTGAG GGGGCGGG CCGGGGGGAA chrX:12760788-12760908 16 1.11e-05 CGATGAACAC CGCGCGGG GCAACTTATG chr3L:16174167-16174287 77 1.11e-05 CAGACGGGGT CGCGCGGG GTTTTTTTCA chr3R:27186122-27186242 16 1.25e-05 GGGCAGGGAG GGGGCCGG GAATTGGTGG chr3L:13497856-13497976 90 1.47e-05 CGGGTAATGC GGTGCGGG TATAGCGGAA chr2L:18561906-18562026 38 2.15e-05 GGAGGAAGAG GGAGGGGG GAGGGTTGAA chr3R:10881928-10882048 44 2.68e-05 CTTCATTACA GGCGGCGG CCCGTGGATT chr3L:1859688-1859808 96 2.68e-05 TCTCTGAGAG CGCGCCGG AAAtgtgtag chr3R:18914093-18914213 13 3.08e-05 TATACCTTTT GGAGCGGA CATAGGTGAC chr3L:2830008-2830128 31 3.08e-05 GCACTCGAGA GGAGCGGa gcagaaggct chr2L:7608222-7608342 1 3.30e-05 . GGTGCCGG TGATTTGAGA chr3L:8368804-8368924 111 4.21e-05 AGAAGGAGGA GGAGGCGG TT chr2L:7573599-7573719 46 4.21e-05 GGCGAGAAAG GGAGGCGG CGAAAAGTGA chr3R:31943832-31943952 93 4.21e-05 AGACAAGTGC GGGGCGGA GATATGTGGC chr3L:11113447-11113567 35 4.61e-05 GGAAGAGGGG GCCGCGGG TGCAGCCGGC chr3R:5363579-5363699 14 7.08e-05 AAAAAAAAGC GGACCGGG AAGCTGTAGC chr3L:3242238-3242358 94 7.08e-05 TTTGCCCCGC CGCGCGGA GGCTGCCTCA chr3L:6359314-6359434 5 8.48e-05 AGCT GGAGCGGT ACACTGAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMGCGGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7422544-7422664 1.3e-06 96_[+2]_16 chr2R:17439604-17439724 1.3e-06 46_[+2]_66 chr2R:7473825-7473945 3.6e-06 54_[+2]_58 chr2R:15483738-15483858 3.6e-06 86_[+2]_26 chr2L:2857935-2858055 6.2e-06 63_[+2]_49 chr3L:16165508-16165628 6.2e-06 77_[+2]_35 chr3L:14456086-14456206 6.2e-06 16_[+2]_96 chrX:12760788-12760908 1.1e-05 15_[+2]_97 chr3L:16174167-16174287 1.1e-05 76_[+2]_36 chr3R:27186122-27186242 1.2e-05 15_[+2]_97 chr3L:13497856-13497976 1.5e-05 89_[+2]_23 chr2L:18561906-18562026 2.2e-05 37_[+2]_75 chr3R:10881928-10882048 2.7e-05 43_[+2]_69 chr3L:1859688-1859808 2.7e-05 95_[+2]_17 chr3R:18914093-18914213 3.1e-05 12_[+2]_100 chr3L:2830008-2830128 3.1e-05 30_[+2]_82 chr2L:7608222-7608342 3.3e-05 [+2]_112 chr3L:8368804-8368924 4.2e-05 110_[+2]_2 chr2L:7573599-7573719 4.2e-05 45_[+2]_67 chr3R:31943832-31943952 4.2e-05 92_[+2]_20 chr3L:11113447-11113567 4.6e-05 34_[+2]_78 chr3R:5363579-5363699 7.1e-05 13_[+2]_99 chr3L:3242238-3242358 7.1e-05 93_[+2]_19 chr3L:6359314-6359434 8.5e-05 4_[+2]_108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMGCGGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGMGCGGG width=8 seqs=24 chr2L:7422544-7422664 ( 97) GGCGCGGG 1 chr2R:17439604-17439724 ( 47) GGCGCGGG 1 chr2R:7473825-7473945 ( 55) GGAGCGGG 1 chr2R:15483738-15483858 ( 87) GGAGCGGG 1 chr2L:2857935-2858055 ( 64) GGGGCGGG 1 chr3L:16165508-16165628 ( 78) GGCGCCGG 1 chr3L:14456086-14456206 ( 17) GGGGCGGG 1 chrX:12760788-12760908 ( 16) CGCGCGGG 1 chr3L:16174167-16174287 ( 77) CGCGCGGG 1 chr3R:27186122-27186242 ( 16) GGGGCCGG 1 chr3L:13497856-13497976 ( 90) GGTGCGGG 1 chr2L:18561906-18562026 ( 38) GGAGGGGG 1 chr3R:10881928-10882048 ( 44) GGCGGCGG 1 chr3L:1859688-1859808 ( 96) CGCGCCGG 1 chr3R:18914093-18914213 ( 13) GGAGCGGA 1 chr3L:2830008-2830128 ( 31) GGAGCGGA 1 chr2L:7608222-7608342 ( 1) GGTGCCGG 1 chr3L:8368804-8368924 ( 111) GGAGGCGG 1 chr2L:7573599-7573719 ( 46) GGAGGCGG 1 chr3R:31943832-31943952 ( 93) GGGGCGGA 1 chr3L:11113447-11113567 ( 35) GCCGCGGG 1 chr3R:5363579-5363699 ( 14) GGACCGGG 1 chr3L:3242238-3242358 ( 94) CGCGCGGA 1 chr3L:6359314-6359434 ( 5) GGAGCGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMGCGGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3 E= 3.2e-002 -1123 -14 218 -1123 -1123 -214 238 -1123 23 103 -14 -190 -1123 -214 238 -1123 -1123 218 -14 -1123 -1123 66 194 -1123 -1123 -1123 244 -1123 -94 -1123 210 -290 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMGCGGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 3.2e-002 0.000000 0.166667 0.833333 0.000000 0.000000 0.041667 0.958333 0.000000 0.375000 0.375000 0.166667 0.083333 0.000000 0.041667 0.958333 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.291667 0.708333 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.791667 0.041667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMGCGGG MEME-2 regular expression -------------------------------------------------------------------------------- GG[AC]GC[GC]GG -------------------------------------------------------------------------------- Time 15.07 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCWGCT MEME-3 width = 8 sites = 18 llr = 175 E-value = 1.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCWGCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::4::1 pos.-specific C 6::a::a: probability G 2:9::a:: matrix T 2a1:6::9 bits 2.4 * ** 2.2 ** ** 2.0 ** ** 1.7 *** ** Relative 1.5 *** *** Entropy 1.2 *** *** (14.0 bits) 1.0 *** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGCTGCT consensus G A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:29254479-29254599 92 6.41e-06 GCATTTTTTG CTGCTGCT TTTTTTTGGA chr3R:9934977-9935097 111 6.41e-06 GACGATTTGA CTGCTGCT GC chr3L:10352256-10352376 1 6.41e-06 . ctgctgct tctgctttat chr2L:12013934-12014054 89 6.41e-06 gctgcgtttg ctgctgct CCCAGCAGGT chr3L:18754037-18754157 1 6.41e-06 . CTGCTGCT TGGCTGACTG chr3L:16490036-16490156 82 6.41e-06 ACTCCTCTGC CTGCTGCT GGCTGGCTGC chr3R:13372121-13372241 79 1.30e-05 AGAGGGTATT CTGCAGCT CGATCTTTTT chr3L:12090433-12090553 12 1.30e-05 AAATTTACTG CTGCAGCT TGTTACCAAA chr2L:2857935-2858055 105 1.94e-05 CATTTAAGGT GTGCTGCT TTTGCCCC chr2L:4348703-4348823 68 2.60e-05 ACTAAAATCA GTGCAGCT AGTTTATAAG chrX:3147137-3147257 27 2.60e-05 AGCGTTATGA GTGCAGCT TTAAACCAAA chr3R:5363579-5363699 71 2.60e-05 GTCGAGTTGC GTGCAGCT GGCGACCTTC chr2L:10616047-10616167 41 3.68e-05 TAAATGTCGT TTGCTGCT AATCAAAATA chr3R:16154382-16154502 26 3.68e-05 ATAAACGAAC TTGCTGCT GTTCTTTTTG chr2R:20136873-20136993 107 4.80e-05 CGGTGTGCAT TTGCAGCT TTTAGC chr3L:6369758-6369878 4 4.80e-05 AAC TTGCAGCT TTTCTCAGGT chr3L:17577817-17577937 21 5.45e-05 GCGGACGTCG CTGCTGCA ATCGACACGA chr2L:12513894-12514014 57 7.21e-05 TTTGGTTTGC CTTCTGCT TCGTTTTTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29254479-29254599 6.4e-06 91_[+3]_21 chr3R:9934977-9935097 6.4e-06 110_[+3]_2 chr3L:10352256-10352376 6.4e-06 [+3]_112 chr2L:12013934-12014054 6.4e-06 88_[+3]_24 chr3L:18754037-18754157 6.4e-06 [+3]_112 chr3L:16490036-16490156 6.4e-06 81_[+3]_31 chr3R:13372121-13372241 1.3e-05 78_[+3]_34 chr3L:12090433-12090553 1.3e-05 11_[+3]_101 chr2L:2857935-2858055 1.9e-05 104_[+3]_8 chr2L:4348703-4348823 2.6e-05 67_[+3]_45 chrX:3147137-3147257 2.6e-05 26_[+3]_86 chr3R:5363579-5363699 2.6e-05 70_[+3]_42 chr2L:10616047-10616167 3.7e-05 40_[+3]_72 chr3R:16154382-16154502 3.7e-05 25_[+3]_87 chr2R:20136873-20136993 4.8e-05 106_[+3]_6 chr3L:6369758-6369878 4.8e-05 3_[+3]_109 chr3L:17577817-17577937 5.5e-05 20_[+3]_92 chr2L:12513894-12514014 7.2e-05 56_[+3]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCWGCT width=8 seqs=18 chr3R:29254479-29254599 ( 92) CTGCTGCT 1 chr3R:9934977-9935097 ( 111) CTGCTGCT 1 chr3L:10352256-10352376 ( 1) CTGCTGCT 1 chr2L:12013934-12014054 ( 89) CTGCTGCT 1 chr3L:18754037-18754157 ( 1) CTGCTGCT 1 chr3L:16490036-16490156 ( 82) CTGCTGCT 1 chr3R:13372121-13372241 ( 79) CTGCAGCT 1 chr3L:12090433-12090553 ( 12) CTGCAGCT 1 chr2L:2857935-2858055 ( 105) GTGCTGCT 1 chr2L:4348703-4348823 ( 68) GTGCAGCT 1 chrX:3147137-3147257 ( 27) GTGCAGCT 1 chr3R:5363579-5363699 ( 71) GTGCAGCT 1 chr2L:10616047-10616167 ( 41) TTGCTGCT 1 chr3R:16154382-16154502 ( 26) TTGCTGCT 1 chr2R:20136873-20136993 ( 107) TTGCAGCT 1 chr3L:6369758-6369878 ( 4) TTGCAGCT 1 chr3L:17577817-17577937 ( 21) CTGCTGCA 1 chr2L:12513894-12514014 ( 57) CTTCTGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 1.6e+003 -1081 159 27 -49 -1081 -1081 -1081 168 -1081 -1081 236 -249 -1081 244 -1081 -1081 28 -1081 -1081 97 -1081 -1081 244 -1081 -1081 244 -1081 -1081 -252 -1081 -1081 160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.6e+003 0.000000 0.555556 0.222222 0.222222 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.944444 0.055556 0.000000 1.000000 0.000000 0.000000 0.388889 0.000000 0.000000 0.611111 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.055556 0.000000 0.000000 0.944444 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGCT MEME-3 regular expression -------------------------------------------------------------------------------- [CGT]TGC[TA]GCT -------------------------------------------------------------------------------- Time 21.32 secs. ******************************************************************************** ******************************************************************************** MOTIF CDSKCBSC MEME-4 width = 8 sites = 46 llr = 375 E-value = 3.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CDSKCBSC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :4:::::: pos.-specific C a:42a35a probability G :363:45: matrix T :3:5:3:: bits 2.4 * * * 2.2 * * * 2.0 * * * 1.7 * * * Relative 1.5 * * * ** Entropy 1.2 * * * ** (11.8 bits) 1.0 * * * ** 0.7 * * **** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel CAGTCGGC consensus TCG TC sequence G C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDSKCBSC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7246630-7246750 13 3.54e-06 CGTGAGGATT CGGGCGGC ATTCATCGGC chr3R:4174624-4174744 60 7.08e-06 AAATTCGTAG CGGGCGCC AGTAGGACGA chr2L:20913030-20913150 1 1.46e-05 . CGGCCGGC CCATTGTCGA chr3L:10675797-10675917 40 1.46e-05 AAACAAAAGG CAGGCGGC TAAAAAAAGT chrX:1612050-1612170 93 1.46e-05 aTGAAACATA CAGGCGGC ATAAGTATAT chrX:18256650-18256770 89 1.46e-05 GGACATTCAG CAGTCGGC GCGTCAGCTG chr2L:7879661-7879781 22 3.16e-05 TAAGAGCGAA CGCTCGGC GAACTGAGTT chr2L:20716162-20716282 11 3.16e-05 AGAGTCTTGG CGCTCGGC ACCCGAACCC chr3R:19064227-19064347 102 3.16e-05 GGCCGAAAAC CAGTCGCC ACTCACACTG chrX:9495968-9496088 63 4.47e-05 CTTTGTTGAA CGCGCGCC ATTTTTCTTC chrX:1972291-1972411 27 4.47e-05 ATCTCTGTTT CTGTCGCC CTCTGGCGCT chr3L:16211726-16211846 109 4.47e-05 AAGTTGATTT CTGTCGCC TTCC chr2R:15611064-15611184 12 4.47e-05 gagaCTGGCA CTGGCGCC TCGTGCAAAA chr3R:21649950-21650070 88 4.47e-05 GTAGACACGT CTGTCGCC TCTCTTGTAA chr3L:11113447-11113567 45 5.05e-05 GCCGCGGGTG CAGCCGGC TATTTGACCT chr2R:15483738-15483858 43 5.05e-05 TGCTATATTG CGGTCCCC CTTGTTTTTT chrX:5025366-5025486 36 6.25e-05 GCAACAGCTG CACTCGGC GAAAGTCAGC chr3L:18754037-18754157 83 6.25e-05 AATGCACATT CTGCCGGC GTCGCTGTCG chr3L:2830008-2830128 7 8.57e-05 gctccc cgcccgcc TGTCTGGCAC chr3R:21599710-21599830 73 8.57e-05 TCGACTTATT CACGCGCC GTTCACATAA chr3R:29210760-29210880 33 1.15e-04 CTGGTTATTG CTCTCGCC TTTTCCTTAG chr2L:17268316-17268436 21 1.15e-04 ctccagACTT CAGTCCCC ATGTCTCTGT chr2L:21020187-21020307 94 1.15e-04 ATTATTAGAG CGCTCCGC CTGTTTTCAG chr3R:30864092-30864212 10 1.15e-04 CCCAGTAAT CAGGCCCC CGAAATGCGG chr3L:17939792-17939912 113 1.15e-04 AACGGGTTTG CGCGCCGC chr3L:3242238-3242358 21 1.15e-04 ACTAGTTGGA CGGGCTGC CCTCCACTCC chr3L:2553265-2553385 43 1.33e-04 ATCTCGCTCT CGCTCCCC CTCTCTCCCG chr2R:15497439-15497559 34 1.39e-04 aacacaaaaG CAGCCCGC GCGATTTTAC chr2R:6149433-6149553 62 1.39e-04 TGGGTCGTCG CAGCCCGC GCACCGCCAG chrX:14953140-14953260 47 1.66e-04 GACCCTGGCT CAGCCCCC TTCCCCTTAT chr3R:6426398-6426518 77 2.11e-04 CTCCCCCTTC CTGTCTGC TCTCCTCTCC chr3L:16490036-16490156 92 2.11e-04 CTGCTGCTGG CTGGCTGC TCATTTGTCT chr3R:16082567-16082687 3 2.11e-04 AC CACTCCCC ATTTCTAATG chr3L:16145359-16145479 51 2.11e-04 gtgcgtgtgc ctgtctgc atgtgtgcat chr2L:18561906-18562026 12 2.11e-04 GTGAACGCAC CTGTCTGC TTGTTGTTGG chr3L:16211524-16211644 37 2.11e-04 agagagagag CTGGCTGC ACTGGCAAAG chr3L:18037985-18038105 68 2.11e-04 CCGTCCTTCT CTGTCTGC CCTACATTGG chr3R:11456730-11456850 67 2.33e-04 AGCGCATGTT CTGGCTCC AAAAGCCGAA chr2L:7973643-7973763 59 2.64e-04 CGCCCCTTCA CACCCCCC AACCCAACCA chr2L:15385473-15385593 105 2.64e-04 ATAATATAAA CGCCCTGC ATCTAGAT chr3L:9509183-9509303 17 2.64e-04 TGCCAAACCG CACCCCCC ACCACACGGC chr3L:6359314-6359434 98 2.93e-04 GCTTAAGCTT CTCTCTGC CAGATACGTT chr2L:11358542-11358662 92 2.93e-04 GTTTTTTGCT CTCTCTGC CGCCAGAGAG chr3R:21921575-21921695 20 2.93e-04 CTCCCACCGC CACTCTCC ACATCAAAGT chr2R:21543351-21543471 36 2.93e-04 GACGGCGAGG CACTCTCC GTATTTTGTA chrX:13988947-13989067 113 3.03e-04 GAGTGAAAAC CTCGCTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDSKCBSC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7246630-7246750 3.5e-06 12_[+4]_100 chr3R:4174624-4174744 7.1e-06 59_[+4]_53 chr2L:20913030-20913150 1.5e-05 [+4]_112 chr3L:10675797-10675917 1.5e-05 39_[+4]_73 chrX:1612050-1612170 1.5e-05 92_[+4]_20 chrX:18256650-18256770 1.5e-05 88_[+4]_24 chr2L:7879661-7879781 3.2e-05 21_[+4]_91 chr2L:20716162-20716282 3.2e-05 10_[+4]_102 chr3R:19064227-19064347 3.2e-05 101_[+4]_11 chrX:9495968-9496088 4.5e-05 62_[+4]_50 chrX:1972291-1972411 4.5e-05 26_[+4]_86 chr3L:16211726-16211846 4.5e-05 108_[+4]_4 chr2R:15611064-15611184 4.5e-05 11_[+4]_101 chr3R:21649950-21650070 4.5e-05 87_[+4]_25 chr3L:11113447-11113567 5e-05 44_[+4]_68 chr2R:15483738-15483858 5e-05 42_[+4]_70 chrX:5025366-5025486 6.2e-05 35_[+4]_77 chr3L:18754037-18754157 6.2e-05 82_[+4]_30 chr3L:2830008-2830128 8.6e-05 6_[+4]_106 chr3R:21599710-21599830 8.6e-05 72_[+4]_40 chr3R:29210760-29210880 0.00011 32_[+4]_80 chr2L:17268316-17268436 0.00011 20_[+4]_92 chr2L:21020187-21020307 0.00011 93_[+4]_19 chr3R:30864092-30864212 0.00011 9_[+4]_103 chr3L:17939792-17939912 0.00011 112_[+4] chr3L:3242238-3242358 0.00011 20_[+4]_92 chr3L:2553265-2553385 0.00013 42_[+4]_70 chr2R:15497439-15497559 0.00014 33_[+4]_79 chr2R:6149433-6149553 0.00014 61_[+4]_51 chrX:14953140-14953260 0.00017 46_[+4]_66 chr3R:6426398-6426518 0.00021 76_[+4]_36 chr3L:16490036-16490156 0.00021 91_[+4]_21 chr3R:16082567-16082687 0.00021 2_[+4]_110 chr3L:16145359-16145479 0.00021 50_[+4]_62 chr2L:18561906-18562026 0.00021 11_[+4]_101 chr3L:16211524-16211644 0.00021 36_[+4]_76 chr3L:18037985-18038105 0.00021 67_[+4]_45 chr3R:11456730-11456850 0.00023 66_[+4]_46 chr2L:7973643-7973763 0.00026 58_[+4]_54 chr2L:15385473-15385593 0.00026 104_[+4]_8 chr3L:9509183-9509303 0.00026 16_[+4]_96 chr3L:6359314-6359434 0.00029 97_[+4]_15 chr2L:11358542-11358662 0.00029 91_[+4]_21 chr3R:21921575-21921695 0.00029 19_[+4]_93 chr2R:21543351-21543471 0.00029 35_[+4]_77 chrX:13988947-13989067 0.0003 112_[+4] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDSKCBSC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CDSKCBSC width=8 seqs=46 chr2R:7246630-7246750 ( 13) CGGGCGGC 1 chr3R:4174624-4174744 ( 60) CGGGCGCC 1 chr2L:20913030-20913150 ( 1) CGGCCGGC 1 chr3L:10675797-10675917 ( 40) CAGGCGGC 1 chrX:1612050-1612170 ( 93) CAGGCGGC 1 chrX:18256650-18256770 ( 89) CAGTCGGC 1 chr2L:7879661-7879781 ( 22) CGCTCGGC 1 chr2L:20716162-20716282 ( 11) CGCTCGGC 1 chr3R:19064227-19064347 ( 102) CAGTCGCC 1 chrX:9495968-9496088 ( 63) CGCGCGCC 1 chrX:1972291-1972411 ( 27) CTGTCGCC 1 chr3L:16211726-16211846 ( 109) CTGTCGCC 1 chr2R:15611064-15611184 ( 12) CTGGCGCC 1 chr3R:21649950-21650070 ( 88) CTGTCGCC 1 chr3L:11113447-11113567 ( 45) CAGCCGGC 1 chr2R:15483738-15483858 ( 43) CGGTCCCC 1 chrX:5025366-5025486 ( 36) CACTCGGC 1 chr3L:18754037-18754157 ( 83) CTGCCGGC 1 chr3L:2830008-2830128 ( 7) CGCCCGCC 1 chr3R:21599710-21599830 ( 73) CACGCGCC 1 chr3R:29210760-29210880 ( 33) CTCTCGCC 1 chr2L:17268316-17268436 ( 21) CAGTCCCC 1 chr2L:21020187-21020307 ( 94) CGCTCCGC 1 chr3R:30864092-30864212 ( 10) CAGGCCCC 1 chr3L:17939792-17939912 ( 113) CGCGCCGC 1 chr3L:3242238-3242358 ( 21) CGGGCTGC 1 chr3L:2553265-2553385 ( 43) CGCTCCCC 1 chr2R:15497439-15497559 ( 34) CAGCCCGC 1 chr2R:6149433-6149553 ( 62) CAGCCCGC 1 chrX:14953140-14953260 ( 47) CAGCCCCC 1 chr3R:6426398-6426518 ( 77) CTGTCTGC 1 chr3L:16490036-16490156 ( 92) CTGGCTGC 1 chr3R:16082567-16082687 ( 3) CACTCCCC 1 chr3L:16145359-16145479 ( 51) CTGTCTGC 1 chr2L:18561906-18562026 ( 12) CTGTCTGC 1 chr3L:16211524-16211644 ( 37) CTGGCTGC 1 chr3L:18037985-18038105 ( 68) CTGTCTGC 1 chr3R:11456730-11456850 ( 67) CTGGCTCC 1 chr2L:7973643-7973763 ( 59) CACCCCCC 1 chr2L:15385473-15385593 ( 105) CGCCCTGC 1 chr3L:9509183-9509303 ( 17) CACCCCCC 1 chr3L:6359314-6359434 ( 98) CTCTCTGC 1 chr2L:11358542-11358662 ( 92) CTCTCTGC 1 chr3R:21921575-21921695 ( 20) CACTCTCC 1 chr2R:21543351-21543471 ( 36) CACTCTCC 1 chrX:13988947-13989067 ( 113) CTCGCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDSKCBSC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8217 E= 3.3e+001 -1217 244 -1217 -1217 21 -1217 62 16 -1217 117 167 -1217 -1217 24 72 62 -1217 244 -1217 -1217 -1217 50 124 -4 -1217 138 150 -1217 -1217 244 -1217 -1217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDSKCBSC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 3.3e+001 0.000000 1.000000 0.000000 0.000000 0.369565 0.000000 0.282609 0.347826 0.000000 0.413043 0.586957 0.000000 0.000000 0.217391 0.304348 0.478261 0.000000 1.000000 0.000000 0.000000 0.000000 0.260870 0.434783 0.304348 0.000000 0.478261 0.521739 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDSKCBSC MEME-4 regular expression -------------------------------------------------------------------------------- C[ATG][GC][TGC]C[GTC][GC]C -------------------------------------------------------------------------------- Time 27.55 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAA MEME-5 width = 8 sites = 57 llr = 457 E-value = 4.4e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A aaa87aaa pos.-specific C :::2:::: probability G ::::1::: matrix T ::::1::: bits 2.4 2.2 2.0 1.7 *** *** Relative 1.5 *** *** Entropy 1.2 *** *** (11.6 bits) 1.0 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:2831794-2831914 89 1.10e-04 GCAGCTTCAG AAAAAAAA AGGATAAGAG chr3R:29254479-29254599 46 1.10e-04 AAATCGAAAA AAAAAAAA TGACTGACTG chrX:8063322-8063442 34 1.10e-04 GGAGGCCAAC AAAAAAAA ACAACAAAAG chrX:9495968-9496088 23 1.10e-04 CAGCACTTGA AAAAAAAA TCGTTTTCGT chrX:6059271-6059391 1 1.10e-04 . AAAAAAAA ACTTGACACC chr3R:29055852-29055972 97 1.10e-04 TTTTTTTCCC AAAAAAAA GAAACATTTA chr2L:651015-651135 72 1.10e-04 GCACGCAAAG AAAAAAAA GGTATTTGTA chrX:5026162-5026282 86 1.10e-04 ATATGGCTTG AAAAAAAA CATATGTTAA chrX:13990585-13990705 23 1.10e-04 AAACAAAATA AAAAAAAA TTTGCGAAAA chrX:8255025-8255145 2 1.10e-04 A AAAAAAAA GTGGTGACTT chr3L:9675585-9675705 30 1.10e-04 aaacaaatac aaaaaaaa GAGCGAGCGC chrX:13988947-13989067 39 1.10e-04 ATGCAAAAAA AAAAAAAA GGAGAAGAAG chrX:3147137-3147257 51 1.10e-04 CAAAAAAGAA AAAAAAAA TCGAAAGTCG chrX:17113505-17113625 63 1.10e-04 CAAGGAACAT AAAAAAAA GGTTTACCAC chrX:6984041-6984161 106 1.10e-04 TAATTTTTAT AAAAAAAA AGATTCG chrX:12596548-12596668 46 1.10e-04 GCGAAGTGGT aaaaaaaa catttaaaaa chr2R:19616286-19616406 89 1.10e-04 aaataaataa aaaaaaaa atgcgaaaaa chr2R:6148290-6148410 38 1.10e-04 GCTGACTGGC AAAAAAAA GCATCTGCTG chrX:4435107-4435227 41 1.10e-04 ATACAACAAA AAAAAAAA GGGAATACCA chrX:22479511-22479631 88 1.10e-04 TATTACAAAA AAAAAAAA TGCATTTTTG chr2R:15497439-15497559 17 1.10e-04 AGCaaaaaaa aaaaaaaa acacaaaaGC chr3R:16154382-16154502 88 1.10e-04 cttgcaaaaa aaaaaaaa atacacaagc chr2R:20646225-20646345 43 1.10e-04 AGACGAACCa aaaaaaaa aaaaaaaaga chr3L:6369758-6369878 65 1.10e-04 gaacgaaata aaaaaaaa ttaataaGCC chr3L:16195604-16195724 12 1.10e-04 GCCGCGGaaa aaaaaaaa aacaaaaata chr3R:16082567-16082687 64 1.10e-04 AAAGAAAAGA AAAAAAAA CTTTAATGTG chr3R:25759586-25759706 22 1.10e-04 GACGTAGCTA AAAAAAAA TACAAAAACC chr2R:19620114-19620234 53 1.10e-04 caataacaaa aaaaaaaa aaacaaTCAT chr3R:19064227-19064347 53 1.10e-04 CAGCTCGCCA AAAAAAAA CATCCTTTTT chr3R:5363579-5363699 3 1.10e-04 AC AAAAAAAA AGCGGACCGG chr3L:14456086-14456206 66 1.10e-04 GTCCaaacaa aaaaaaaa aaagacaaaa chr3L:6359314-6359434 19 1.73e-04 CGGTACACTG AAACAAAA TCGTAAAATA chr3L:10675797-10675917 30 1.73e-04 AACGAGAAAA AAACAAAA GGCAGGCGGC chrX:361564-361684 80 1.73e-04 AGCAAAAATA AAACAAAA AATACGCATG chr2L:18628282-18628402 5 1.73e-04 GCTG AAACAAAA TGTTGAACTT chrX:10324851-10324971 35 1.73e-04 ACCAAATCTA AAACAAAA CTATACTCAA chr2L:7879661-7879781 92 1.73e-04 TCGAAAAATA AAACAAAA CCGGAAAATA chr3L:8368804-8368924 6 1.73e-04 AATAT AAACAAAA AGTGGGATGT chr2R:19187320-19187440 18 1.73e-04 CTTAAAAATA AAACAAAA CTGACCAGTT chr3R:13816388-13816508 52 1.73e-04 CACACATACA AAACAAAA TAACAAAATT chr3L:16178581-16178701 9 1.73e-04 GACGCATG AAACAAAA TACCGAAATT chr3R:31943832-31943952 42 1.73e-04 caaaaacaga aaacaaaa aaagaaacag chr2L:16503029-16503149 51 2.36e-04 TGTAGGTGAT AAAAGAAA TTAATGGGTA chr2R:10057941-10058061 95 2.36e-04 TCCTGCAGAA AAAAGAAA AAGAGCGCGA chr3L:18198950-18199070 50 2.36e-04 TTCCCTGGCA AAAAGAAA GTTAAATAAT chr3R:11456730-11456850 50 2.36e-04 ACAAAACCAG AAAAGAAA GCGCATGTTC chr3L:69441-69561 100 2.36e-04 AGGAAATGTG AAAAGAAA AAAACGTAAA chrX:768065-768185 33 3.44e-04 GGAGATAAAT AAAATAAA TATTGACGCG chr3L:15258467-15258587 8 3.44e-04 ATCACTG AAAATAAA AACTATAAAG chr3R:8272716-8272836 8 3.44e-04 CCTGGCT AAAATAAA TATCAAAATT chr3R:30285046-30285166 80 3.44e-04 GCCAGACACA AAAATAAA ACGCAACGTG chr3R:13793435-13793555 7 3.44e-04 ATACAC AAAATAAA ATAATCATGC chrX:21519366-21519486 54 3.44e-04 GCGCACCCTA AAAATAAA AGCTTTGTCT chr2R:14922937-14923057 41 3.44e-04 TCTTTAAGGt aaaataaa taaaatttaa chr3L:15209120-15209240 32 3.44e-04 TTTATATGGT AAAATAAA TACATACAAA chrX:2334733-2334853 110 3.80e-04 aggaaaacga aaacgaaa aaa chr2R:7909593-7909713 20 3.80e-04 ACGAAACTGA AAACGAAA CGGGTTTGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:2831794-2831914 0.00011 88_[+5]_24 chr3R:29254479-29254599 0.00011 45_[+5]_67 chrX:8063322-8063442 0.00011 33_[+5]_79 chrX:9495968-9496088 0.00011 22_[+5]_90 chrX:6059271-6059391 0.00011 [+5]_112 chr3R:29055852-29055972 0.00011 96_[+5]_16 chr2L:651015-651135 0.00011 71_[+5]_41 chrX:5026162-5026282 0.00011 85_[+5]_27 chrX:13990585-13990705 0.00011 22_[+5]_90 chrX:8255025-8255145 0.00011 1_[+5]_111 chr3L:9675585-9675705 0.00011 29_[+5]_83 chrX:13988947-13989067 0.00011 38_[+5]_74 chrX:3147137-3147257 0.00011 50_[+5]_62 chrX:17113505-17113625 0.00011 62_[+5]_50 chrX:6984041-6984161 0.00011 105_[+5]_7 chrX:12596548-12596668 0.00011 45_[+5]_67 chr2R:19616286-19616406 0.00011 88_[+5]_24 chr2R:6148290-6148410 0.00011 37_[+5]_75 chrX:4435107-4435227 0.00011 40_[+5]_72 chrX:22479511-22479631 0.00011 87_[+5]_25 chr2R:15497439-15497559 0.00011 16_[+5]_96 chr3R:16154382-16154502 0.00011 87_[+5]_25 chr2R:20646225-20646345 0.00011 42_[+5]_70 chr3L:6369758-6369878 0.00011 64_[+5]_48 chr3L:16195604-16195724 0.00011 11_[+5]_101 chr3R:16082567-16082687 0.00011 63_[+5]_49 chr3R:25759586-25759706 0.00011 21_[+5]_91 chr2R:19620114-19620234 0.00011 52_[+5]_60 chr3R:19064227-19064347 0.00011 52_[+5]_60 chr3R:5363579-5363699 0.00011 2_[+5]_110 chr3L:14456086-14456206 0.00011 65_[+5]_47 chr3L:6359314-6359434 0.00017 18_[+5]_94 chr3L:10675797-10675917 0.00017 29_[+5]_83 chrX:361564-361684 0.00017 79_[+5]_33 chr2L:18628282-18628402 0.00017 4_[+5]_108 chrX:10324851-10324971 0.00017 34_[+5]_78 chr2L:7879661-7879781 0.00017 91_[+5]_21 chr3L:8368804-8368924 0.00017 5_[+5]_107 chr2R:19187320-19187440 0.00017 17_[+5]_95 chr3R:13816388-13816508 0.00017 51_[+5]_61 chr3L:16178581-16178701 0.00017 8_[+5]_104 chr3R:31943832-31943952 0.00017 41_[+5]_71 chr2L:16503029-16503149 0.00024 50_[+5]_62 chr2R:10057941-10058061 0.00024 94_[+5]_18 chr3L:18198950-18199070 0.00024 49_[+5]_63 chr3R:11456730-11456850 0.00024 49_[+5]_63 chr3L:69441-69561 0.00024 99_[+5]_13 chrX:768065-768185 0.00034 32_[+5]_80 chr3L:15258467-15258587 0.00034 7_[+5]_105 chr3R:8272716-8272836 0.00034 7_[+5]_105 chr3R:30285046-30285166 0.00034 79_[+5]_33 chr3R:13793435-13793555 0.00034 6_[+5]_106 chrX:21519366-21519486 0.00034 53_[+5]_59 chr2R:14922937-14923057 0.00034 40_[+5]_72 chr3L:15209120-15209240 0.00034 31_[+5]_81 chrX:2334733-2334853 0.00038 109_[+5]_3 chr2R:7909593-7909713 0.00038 19_[+5]_93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAA width=8 seqs=57 chr3L:2831794-2831914 ( 89) AAAAAAAA 1 chr3R:29254479-29254599 ( 46) AAAAAAAA 1 chrX:8063322-8063442 ( 34) AAAAAAAA 1 chrX:9495968-9496088 ( 23) AAAAAAAA 1 chrX:6059271-6059391 ( 1) AAAAAAAA 1 chr3R:29055852-29055972 ( 97) AAAAAAAA 1 chr2L:651015-651135 ( 72) AAAAAAAA 1 chrX:5026162-5026282 ( 86) AAAAAAAA 1 chrX:13990585-13990705 ( 23) AAAAAAAA 1 chrX:8255025-8255145 ( 2) AAAAAAAA 1 chr3L:9675585-9675705 ( 30) AAAAAAAA 1 chrX:13988947-13989067 ( 39) AAAAAAAA 1 chrX:3147137-3147257 ( 51) AAAAAAAA 1 chrX:17113505-17113625 ( 63) AAAAAAAA 1 chrX:6984041-6984161 ( 106) AAAAAAAA 1 chrX:12596548-12596668 ( 46) AAAAAAAA 1 chr2R:19616286-19616406 ( 89) AAAAAAAA 1 chr2R:6148290-6148410 ( 38) AAAAAAAA 1 chrX:4435107-4435227 ( 41) AAAAAAAA 1 chrX:22479511-22479631 ( 88) AAAAAAAA 1 chr2R:15497439-15497559 ( 17) AAAAAAAA 1 chr3R:16154382-16154502 ( 88) AAAAAAAA 1 chr2R:20646225-20646345 ( 43) AAAAAAAA 1 chr3L:6369758-6369878 ( 65) AAAAAAAA 1 chr3L:16195604-16195724 ( 12) AAAAAAAA 1 chr3R:16082567-16082687 ( 64) AAAAAAAA 1 chr3R:25759586-25759706 ( 22) AAAAAAAA 1 chr2R:19620114-19620234 ( 53) AAAAAAAA 1 chr3R:19064227-19064347 ( 53) AAAAAAAA 1 chr3R:5363579-5363699 ( 3) AAAAAAAA 1 chr3L:14456086-14456206 ( 66) AAAAAAAA 1 chr3L:6359314-6359434 ( 19) AAACAAAA 1 chr3L:10675797-10675917 ( 30) AAACAAAA 1 chrX:361564-361684 ( 80) AAACAAAA 1 chr2L:18628282-18628402 ( 5) AAACAAAA 1 chrX:10324851-10324971 ( 35) AAACAAAA 1 chr2L:7879661-7879781 ( 92) AAACAAAA 1 chr3L:8368804-8368924 ( 6) AAACAAAA 1 chr2R:19187320-19187440 ( 18) AAACAAAA 1 chr3R:13816388-13816508 ( 52) AAACAAAA 1 chr3L:16178581-16178701 ( 9) AAACAAAA 1 chr3R:31943832-31943952 ( 42) AAACAAAA 1 chr2L:16503029-16503149 ( 51) AAAAGAAA 1 chr2R:10057941-10058061 ( 95) AAAAGAAA 1 chr3L:18198950-18199070 ( 50) AAAAGAAA 1 chr3R:11456730-11456850 ( 50) AAAAGAAA 1 chr3L:69441-69561 ( 100) AAAAGAAA 1 chrX:768065-768185 ( 33) AAAATAAA 1 chr3L:15258467-15258587 ( 8) AAAATAAA 1 chr3R:8272716-8272836 ( 8) AAAATAAA 1 chr3R:30285046-30285166 ( 80) AAAATAAA 1 chr3R:13793435-13793555 ( 7) AAAATAAA 1 chrX:21519366-21519486 ( 54) AAAATAAA 1 chr2R:14922937-14923057 ( 41) AAAATAAA 1 chr3L:15209120-15209240 ( 32) AAAATAAA 1 chrX:2334733-2334853 ( 110) AAACGAAA 1 chr2R:7909593-7909713 ( 20) AAACGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6312 E= 4.4e-006 165 -1248 -1248 -1248 165 -1248 -1248 -1248 165 -1248 -1248 -1248 127 31 -1248 -1248 120 -1248 -59 -115 165 -1248 -1248 -1248 165 -1248 -1248 -1248 165 -1248 -1248 -1248 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 4.4e-006 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.771930 0.228070 0.000000 0.000000 0.736842 0.000000 0.122807 0.140351 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-5 regular expression -------------------------------------------------------------------------------- AAA[AC]AAAA -------------------------------------------------------------------------------- Time 33.79 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7909593-7909713 2.53e-01 120 chr2R:15226027-15226147 3.62e-03 36_[+1(7.95e-06)]_4_[+1(6.03e-05)]_\ 51_[+1(2.95e-05)]_5 chr2R:6149433-6149553 5.29e-03 73_[+1(1.19e-05)]_39 chr3L:16174167-16174287 1.77e-02 76_[+2(1.11e-05)]_36 chr3L:69441-69561 3.03e-02 120 chr2L:8846925-8847045 1.40e-02 103_[+1(1.88e-05)]_9 chr3L:9509183-9509303 2.33e-03 69_[+1(1.19e-05)]_43 chr3L:18037985-18038105 2.32e-02 120 chr3L:3242238-3242358 7.72e-04 58_[+1(4.72e-05)]_27_[+2(7.08e-05)]_\ 19 chr2L:4588929-4589049 3.57e-01 120 chr3L:16211524-16211644 1.11e-02 59_[+1(8.57e-05)]_53 chr3R:31943832-31943952 2.52e-03 92_[+2(4.21e-05)]_20 chr3L:11151108-11151228 1.98e-01 120 chr3L:17939792-17939912 2.19e-02 120 chr3L:9380359-9380479 2.16e-03 78_[+1(3.97e-06)]_34 chr3L:16178581-16178701 1.44e-01 120 chr3L:14456086-14456206 1.15e-03 16_[+2(6.23e-06)]_96 chrX:13936364-13936484 9.68e-01 120 chr3L:12915579-12915699 9.65e-01 120 chr3R:17202522-17202642 6.12e-01 120 chrX:1574440-1574560 7.33e-01 120 chr3L:16165508-16165628 1.07e-04 77_[+2(6.23e-06)]_35 chr2R:15483738-15483858 1.27e-03 42_[+4(5.05e-05)]_36_[+2(3.60e-06)]_\ 26 chr2L:7909858-7909978 1.41e-01 120 chr3R:15588640-15588760 9.24e-01 120 chr3R:21608522-21608642 3.65e-04 20_[+1(3.97e-06)]_92 chr3R:5363579-5363699 1.84e-07 13_[+2(7.08e-05)]_49_[+3(2.60e-05)]_\ 34_[+1(3.97e-06)] chr3R:21649950-21650070 2.39e-02 87_[+4(4.47e-05)]_25 chr2L:18561906-18562026 7.46e-05 37_[+2(2.15e-05)]_42_[+1(7.95e-06)]_\ 25 chr2L:7573599-7573719 2.05e-04 45_[+2(4.21e-05)]_33_[+1(3.97e-06)]_\ 26 chr3L:1458140-1458260 7.32e-01 120 chr2L:14247967-14248087 8.50e-01 120 chr2R:15611064-15611184 1.23e-03 11_[+4(4.47e-05)]_38_[+1(4.95e-05)]_\ 55 chr2R:11595236-11595356 1.18e-01 120 chr3R:21704577-21704697 2.70e-01 120 chrX:2334733-2334853 2.09e-02 120 chr3L:16145359-16145479 8.34e-04 79_[+1(3.97e-06)]_33 chr3R:19064227-19064347 1.46e-03 101_[+4(3.16e-05)]_11 chr2R:19620114-19620234 3.60e-01 120 chr3R:23496584-23496704 7.00e-01 120 chr3R:30864092-30864212 8.97e-02 120 chr3R:29762493-29762613 9.29e-01 120 chr3L:10928832-10928952 8.69e-01 120 chr3R:26859347-26859467 9.70e-01 120 chr3R:30295155-30295275 1.00e+00 120 chr2R:18610414-18610534 8.89e-01 120 chr2R:7473825-7473945 3.28e-03 54_[+2(3.60e-06)]_58 chr3R:25759586-25759706 1.85e-01 120 chr2L:3341711-3341831 8.75e-01 120 chrX:17493757-17493877 5.73e-01 120 chr3R:24614256-24614376 2.22e-04 24_[+3(6.41e-06)]_88 chr3R:9913604-9913724 5.26e-01 120 chr3R:13816388-13816508 1.98e-01 120 chr2L:10791411-10791531 4.07e-01 120 chr3L:12016312-12016432 5.86e-01 120 chr2L:7574474-7574594 2.84e-01 120 chrX:20244489-20244609 1.87e-01 120 chr3R:16082567-16082687 2.35e-02 120 chr2L:21020187-21020307 1.17e-01 120 chr3L:16490036-16490156 1.40e-03 81_[+3(6.41e-06)]_31 chr2L:20908113-20908233 2.59e-02 63_[+1(6.03e-05)]_49 chrX:18273369-18273489 8.16e-01 120 chr2L:12513894-12514014 4.37e-02 56_[+3(7.21e-05)]_56 chr2L:5429272-5429392 9.98e-01 120 chr3R:11456730-11456850 6.74e-02 120 chr3L:16195604-16195724 1.46e-04 87_[+1(7.95e-06)]_25 chr2L:7619373-7619493 5.67e-01 120 chr3L:18198950-18199070 3.77e-01 120 chr3L:6369758-6369878 4.41e-03 3_[+3(4.80e-05)]_109 chr3L:761845-761965 3.54e-01 120 chrX:5608661-5608781 6.79e-01 120 chr2R:23225175-23225295 8.86e-01 120 chr2R:20646225-20646345 3.95e-02 120 chr2L:18466298-18466418 8.10e-01 120 chr3L:8371022-8371142 5.35e-01 120 chr3L:9033687-9033807 6.70e-01 120 chrX:6775731-6775851 9.39e-01 120 chr3R:21599710-21599830 4.81e-02 72_[+4(8.57e-05)]_40 chr3R:16154382-16154502 6.23e-03 25_[+3(3.68e-05)]_87 chr2R:10237801-10237921 6.29e-01 120 chr3L:15209120-15209240 4.38e-01 120 chr3L:2830008-2830128 5.86e-03 6_[+4(8.57e-05)]_16_[+2(3.08e-05)]_\ 82 chr3L:727337-727457 7.84e-01 120 chr2L:17750311-17750431 9.98e-01 120 chrX:3407961-3408081 2.50e-01 120 chr3R:30843203-30843323 2.37e-01 120 chr2L:15385473-15385593 8.85e-02 120 chr2R:15497439-15497559 2.44e-03 120 chr3L:19650749-19650869 6.51e-01 120 chr2R:22316580-22316700 9.38e-01 120 chr2L:17268316-17268436 2.55e-03 120 chr2R:14922937-14923057 1.03e-01 120 chrX:22479511-22479631 1.04e-01 120 chr2R:10772011-10772131 6.18e-01 120 chrX:4435107-4435227 1.05e-01 120 chr2R:15513530-15513650 1.92e-02 13_[+1(4.72e-05)]_99 chr2L:7608222-7608342 3.02e-02 [+2(3.30e-05)]_112 chr2R:6148290-6148410 1.61e-02 120 chr2R:17439604-17439724 4.53e-03 46_[+2(1.31e-06)]_66 chr3L:16211726-16211846 9.12e-02 108_[+4(4.47e-05)]_4 chrX:18256650-18256770 1.86e-02 88_[+4(1.46e-05)]_24 chr3L:8358339-8358459 7.85e-01 120 chr2R:19616286-19616406 1.05e-01 120 chrX:21519366-21519486 6.25e-01 120 chr2R:5781947-5782067 8.86e-01 120 chrX:12596548-12596668 1.35e-01 120 chr3L:18754037-18754157 8.12e-06 [+3(6.41e-06)]_36_[+1(7.40e-05)]_30_\ [+4(6.25e-05)]_30 chr3L:1090413-1090533 1.28e-01 120 chr2L:11326513-11326633 8.99e-01 120 chr2R:10057941-10058061 3.18e-02 120 chr3L:1859688-1859808 2.38e-02 95_[+2(2.68e-05)]_17 chr3L:12090433-12090553 2.94e-02 11_[+3(1.30e-05)]_101 chrX:6984041-6984161 5.48e-01 120 chr3R:13793435-13793555 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******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************