******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Smox.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:6746364-6746484 1.0000 120 chr2R:23029518-23029638 1.0000 120 chrX:17545656-17545776 1.0000 120 chr2R:19616001-19616121 1.0000 120 chrM:4803-4923 1.0000 120 chrX:17550399-17550519 1.0000 120 chr2L:17782070-17782190 1.0000 120 chr3L:8684551-8684671 1.0000 120 chr3R:21827530-21827650 1.0000 120 chr2R:22144316-22144436 1.0000 120 chrX:19149226-19149346 1.0000 120 chr3R:30843869-30843989 1.0000 120 chr3L:13410348-13410468 1.0000 120 chr3L:8716174-8716294 1.0000 120 chrM:5987-6107 1.0000 120 chrX:20509655-20509775 1.0000 120 chr3L:10935227-10935347 1.0000 120 chr3L:6471940-6472060 1.0000 120 chr3L:8763906-8764026 1.0000 120 chrX:9068238-9068358 1.0000 120 chr3L:10359573-10359693 1.0000 120 chr3R:27593342-27593462 1.0000 120 chr3R:8968983-8969103 1.0000 120 chr2L:8583285-8583405 1.0000 120 chr3L:18101584-18101704 1.0000 120 chr3R:26192384-26192504 1.0000 120 chr2R:23237434-23237554 1.0000 120 chr3R:15554881-15555001 1.0000 120 chr3L:2795675-2795795 1.0000 120 chrM:1535-1655 1.0000 120 chr2R:24237462-24237582 1.0000 120 chr3L:5867036-5867156 1.0000 120 chr2L:15275957-15276077 1.0000 120 chr3L:1457295-1457415 1.0000 120 chr3L:4395685-4395805 1.0000 120 chr3R:8272735-8272855 1.0000 120 chr2L:4069735-4069855 1.0000 120 chr3L:14453368-14453488 1.0000 120 chr2R:18207689-18207809 1.0000 120 chr2R:14467069-14467189 1.0000 120 chr2L:11871055-11871175 1.0000 120 chr2R:18308321-18308441 1.0000 120 chr3R:16985676-16985796 1.0000 120 chrX:6573945-6574065 1.0000 120 chr2L:18805784-18805904 1.0000 120 chr3L:12097383-12097503 1.0000 120 chr2L:21879537-21879657 1.0000 120 chrM:11301-11421 1.0000 120 chrM:9825-9945 1.0000 120 chr3L:3612639-3612759 1.0000 120 chr3R:29762439-29762559 1.0000 120 chr3R:13931969-13932089 1.0000 120 chrX:6458054-6458174 1.0000 120 chrM:213-333 1.0000 120 chrX:7541563-7541683 1.0000 120 chr3R:15457780-15457900 1.0000 120 chr2R:8977721-8977841 1.0000 120 chr3L:3423149-3423269 1.0000 120 chr3L:3074453-3074573 1.0000 120 chr3R:8875878-8875998 1.0000 120 chr3L:8368803-8368923 1.0000 120 chrX:17172264-17172384 1.0000 120 chr3L:6249673-6249793 1.0000 120 chr2R:18312632-18312752 1.0000 120 chr3L:10267702-10267822 1.0000 120 chr3L:6446703-6446823 1.0000 120 chrX:17816522-17816642 1.0000 120 chrX:5888382-5888502 1.0000 120 chr2L:11405648-11405768 1.0000 120 chr2L:9990240-9990360 1.0000 120 chr2R:10580632-10580752 1.0000 120 chr2L:16526648-16526768 1.0000 120 chr3L:21060638-21060758 1.0000 120 chr3R:22205707-22205827 1.0000 120 chr2L:13073058-13073178 1.0000 120 chrX:14750569-14750689 1.0000 120 chr2R:19187328-19187448 1.0000 120 chr2R:12014631-12014751 1.0000 120 chr3L:10952253-10952373 1.0000 120 chr3L:728759-728879 1.0000 120 chr2L:634256-634376 1.0000 120 chr2L:11220954-11221074 1.0000 120 chr2R:18300393-18300513 1.0000 120 chr2R:11509653-11509773 1.0000 120 chr3L:20168245-20168365 1.0000 120 chr2R:7531292-7531412 1.0000 120 chr2L:14572196-14572316 1.0000 120 chr2L:13999131-13999251 1.0000 120 chr2L:9438374-9438494 1.0000 120 chr3R:29763968-29764088 1.0000 120 chr2L:15329507-15329627 1.0000 120 chr3R:31295822-31295942 1.0000 120 chr3R:25461832-25461952 1.0000 120 chr3R:8116079-8116199 1.0000 120 chr2R:15842789-15842909 1.0000 120 chr3R:26894088-26894208 1.0000 120 chr3L:727313-727433 1.0000 120 chr3R:17202477-17202597 1.0000 120 chr2L:5231545-5231665 1.0000 120 chr2R:10772046-10772166 1.0000 120 chr2R:23014887-23015007 1.0000 120 chr3R:31297126-31297246 1.0000 120 chr2R:19913825-19913945 1.0000 120 chr3L:1265126-1265246 1.0000 120 chr3L:10786033-10786153 1.0000 120 chrX:15530532-15530652 1.0000 120 chr3R:4961573-4961693 1.0000 120 chr3R:21648614-21648734 1.0000 120 chr3R:6401574-6401694 1.0000 120 chr3L:18198930-18199050 1.0000 120 chrX:15027071-15027191 1.0000 120 chr3L:20953341-20953461 1.0000 120 chr3L:18193798-18193918 1.0000 120 chrM:12132-12252 1.0000 120 chr2R:6969487-6969607 1.0000 120 chr2L:7573368-7573488 1.0000 120 chr3L:16019303-16019423 1.0000 120 chr3R:20283442-20283562 1.0000 120 chrM:8487-8607 1.0000 120 chr3R:29538571-29538691 1.0000 120 chr3R:18157598-18157718 1.0000 120 chrX:779482-779602 1.0000 120 chr3L:11407252-11407372 1.0000 120 chr3R:29165051-29165171 1.0000 120 chr2L:18466325-18466445 1.0000 120 chr3R:31424580-31424700 1.0000 120 chr3R:15588774-15588894 1.0000 120 chr3R:31956403-31956523 1.0000 120 chrX:5608656-5608776 1.0000 120 chr2L:3004780-3004900 1.0000 120 chr3R:20001672-20001792 1.0000 120 chr2L:10791452-10791572 1.0000 120 chr3R:31688814-31688934 1.0000 120 chr3L:761828-761948 1.0000 120 chr3R:6210731-6210851 1.0000 120 chrX:6022239-6022359 1.0000 120 chr3L:388282-388402 1.0000 120 chr3R:9346690-9346810 1.0000 120 chr3L:18137323-18137443 1.0000 120 chr2L:651033-651153 1.0000 120 chr3R:4884038-4884158 1.0000 120 chrM:13169-13289 1.0000 120 chr2L:623566-623686 1.0000 120 chr3L:8370994-8371114 1.0000 120 chr3R:17122839-17122959 1.0000 120 chrX:17814926-17815046 1.0000 120 chrM:7577-7697 1.0000 120 chr2R:11551180-11551300 1.0000 120 chrX:10324859-10324979 1.0000 120 chr3R:21589654-21589774 1.0000 120 chrX:1320506-1320626 1.0000 120 chr2L:1486422-1486542 1.0000 120 chr2R:16685716-16685836 1.0000 120 chr3L:2152923-2153043 1.0000 120 chrM:5104-5224 1.0000 120 chrX:5026810-5026930 1.0000 120 chr3R:22424125-22424245 1.0000 120 chr3L:16183264-16183384 1.0000 120 chrX:13307367-13307487 1.0000 120 chr3L:1458096-1458216 1.0000 120 chrX:7558763-7558883 1.0000 120 chrM:2745-2865 1.0000 120 chr3L:14350257-14350377 1.0000 120 chr3L:6771317-6771437 1.0000 120 chr3R:10476123-10476243 1.0000 120 chr2R:16818846-16818966 1.0000 120 chrX:17760696-17760816 1.0000 120 chrX:6030182-6030302 1.0000 120 chr3R:13793441-13793561 1.0000 120 chr2R:7615642-7615762 1.0000 120 chrX:2455539-2455659 1.0000 120 chr2R:10599168-10599288 1.0000 120 chr2L:9496744-9496864 1.0000 120 chrX:9062854-9062974 1.0000 120 chr3R:13934766-13934886 1.0000 120 chr3L:15180969-15181089 1.0000 120 chr2R:23022664-23022784 1.0000 120 chr2L:7574391-7574511 1.0000 120 chr3R:8142242-8142362 1.0000 120 chrX:6021546-6021666 1.0000 120 chrX:5025371-5025491 1.0000 120 chr2L:11395795-11395915 1.0000 120 chrM:7365-7485 1.0000 120 chr3L:3513170-3513290 1.0000 120 chrX:7892608-7892728 1.0000 120 chrX:10728166-10728286 1.0000 120 chr3L:17506152-17506272 1.0000 120 chr3L:729454-729574 1.0000 120 chr3L:18406085-18406205 1.0000 120 chrX:14073620-14073740 1.0000 120 chrX:9892971-9893091 1.0000 120 chr3R:9913614-9913734 1.0000 120 chr2L:3554044-3554164 1.0000 120 chr2R:24807842-24807962 1.0000 120 chr3R:23148520-23148640 1.0000 120 chr2L:11399652-11399772 1.0000 120 chr3R:8029767-8029887 1.0000 120 chr3L:14239444-14239564 1.0000 120 chr3R:14290099-14290219 1.0000 120 chr3L:13488493-13488613 1.0000 120 chrX:9468422-9468542 1.0000 120 chr3R:22628064-22628184 1.0000 120 chr3R:13846047-13846167 1.0000 120 chr2L:19905382-19905502 1.0000 120 chr2L:5904707-5904827 1.0000 120 chrX:11550176-11550296 1.0000 120 chr3R:19603130-19603250 1.0000 120 chr2R:6770120-6770240 1.0000 120 chrX:4175949-4176069 1.0000 120 chr3L:1374603-1374723 1.0000 120 chr3R:30256361-30256481 1.0000 120 chr3L:18241059-18241179 1.0000 120 chr2R:10213735-10213855 1.0000 120 chrX:12015149-12015269 1.0000 120 chrX:19164845-19164965 1.0000 120 chr3L:11365923-11366043 1.0000 120 chr3L:11297646-11297766 1.0000 120 chrX:14897826-14897946 1.0000 120 chrX:1466227-1466347 1.0000 120 chr3R:31308970-31309090 1.0000 120 chr3R:13941498-13941618 1.0000 120 chrX:13754516-13754636 1.0000 120 chrX:2452881-2453001 1.0000 120 chr3R:31505345-31505465 1.0000 120 chrX:8667877-8667997 1.0000 120 chr2L:11222217-11222337 1.0000 120 chr3R:16336488-16336608 1.0000 120 chr3R:29778278-29778398 1.0000 120 chr3R:10466412-10466532 1.0000 120 chr2R:10237816-10237936 1.0000 120 chr2L:11328503-11328623 1.0000 120 chr3R:5103718-5103838 1.0000 120 chrM:3588-3708 1.0000 120 chr3R:18742432-18742552 1.0000 120 chr3R:5331873-5331993 1.0000 120 chr3R:15566497-15566617 1.0000 120 chr2L:1409822-1409942 1.0000 120 chr2L:7909348-7909468 1.0000 120 chr2L:19142599-19142719 1.0000 120 chr3L:10786246-10786366 1.0000 120 chr3R:27171226-27171346 1.0000 120 chr2L:7897364-7897484 1.0000 120 chr2L:17749159-17749279 1.0000 120 chr2L:7992088-7992208 1.0000 120 chrX:10104627-10104747 1.0000 120 chr2R:6556942-6557062 1.0000 120 chrX:5026156-5026276 1.0000 120 chrX:17879383-17879503 1.0000 120 chr3L:2838345-2838465 1.0000 120 chr2L:8100601-8100721 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Smox/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Smox.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.352 C 0.152 G 0.148 T 0.347 Background letter frequencies (from file dataset with add-one prior applied): A 0.352 C 0.152 G 0.148 T 0.347 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGGGWGGG MEME-1 width = 8 sites = 10 llr = 110 E-value = 7.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGGWGGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::24::: pos.-specific C :::1::1: probability G :aa5:a9a matrix T a::26::: bits 2.8 ** * * 2.5 ** * * 2.2 ** *** 1.9 ** *** Relative 1.7 *** *** Entropy 1.4 *** *** (15.9 bits) 1.1 *** *** 0.8 *** *** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TGGGTGGG consensus AA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGWGGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:8370994-8371114 20 1.27e-06 GGTGAATGCG TGGGTGGG TTAAAAAGTT chr3L:10935227-10935347 11 1.27e-06 TTTCGGTCTT TGGGTGGG ATGGGTAAAA chrX:19164845-19164965 3 2.55e-06 TG TGGGAGGG ATTCACTGAA chr3R:8116079-8116199 66 2.55e-06 GTCTCGTCAA TGGGAGGG TATACAAAAA chr3R:31424580-31424700 61 9.83e-06 TTAATTTAAT TGGTTGGG TAATATACCT chr2L:9438374-9438494 96 9.83e-06 ACGAAAATGT TGGTTGGG TCAACTTTCT chr3R:8272735-8272855 10 9.83e-06 AAAATTTAA TGGATGGG ATTAGGGATA chr3L:11407252-11407372 42 1.11e-05 ACTCTTCCAA TGGCAGGG TCAATAAATA chr3R:9913614-9913734 104 1.85e-05 CATTTTAATT TGGAAGGG TATTTCCCA chr3R:4884038-4884158 102 1.85e-05 ATTGGAAGTC TGGGTGCG TACCTAAGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGWGGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:8370994-8371114 1.3e-06 19_[+1]_93 chr3L:10935227-10935347 1.3e-06 10_[+1]_102 chrX:19164845-19164965 2.5e-06 2_[+1]_110 chr3R:8116079-8116199 2.5e-06 65_[+1]_47 chr3R:31424580-31424700 9.8e-06 60_[+1]_52 chr2L:9438374-9438494 9.8e-06 95_[+1]_17 chr3R:8272735-8272855 9.8e-06 9_[+1]_103 chr3L:11407252-11407372 1.1e-05 41_[+1]_71 chr3R:9913614-9913734 1.9e-05 103_[+1]_9 chr3R:4884038-4884158 1.9e-05 101_[+1]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGWGGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGGWGGG width=8 seqs=10 chr3L:8370994-8371114 ( 20) TGGGTGGG 1 chr3L:10935227-10935347 ( 11) TGGGTGGG 1 chrX:19164845-19164965 ( 3) TGGGAGGG 1 chr3R:8116079-8116199 ( 66) TGGGAGGG 1 chr3R:31424580-31424700 ( 61) TGGTTGGG 1 chr2L:9438374-9438494 ( 96) TGGTTGGG 1 chr3R:8272735-8272855 ( 10) TGGATGGG 1 chr3L:11407252-11407372 ( 42) TGGCAGGG 1 chr3R:9913614-9913734 ( 104) TGGAAGGG 1 chr3R:4884038-4884158 ( 102) TGGGTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGWGGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 7.6e+001 -997 -997 -997 153 -997 -997 275 -997 -997 -997 275 -997 -81 -61 175 -79 18 -997 -997 79 -997 -997 275 -997 -997 -61 260 -997 -997 -997 275 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGWGGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 7.6e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.100000 0.500000 0.200000 0.400000 0.000000 0.000000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGWGGG MEME-1 regular expression -------------------------------------------------------------------------------- TGG[GAT][TA]GGG -------------------------------------------------------------------------------- Time 7.51 secs. ******************************************************************************** ******************************************************************************** MOTIF SCGGCSCG MEME-2 width = 8 sites = 2 llr = 28 E-value = 6.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCGGCSCG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 5a::a5a: probability G 5:aa:5:a matrix T :::::::: bits 2.8 **** ** 2.5 **** ** 2.2 **** ** 1.9 **** ** Relative 1.7 ******** Entropy 1.4 ******** (19.9 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCGGCCCG consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGGCSCG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6030182-6030302 1 1.02e-06 . GCGGCGCG TCAATGATGT chrX:19149226-19149346 36 1.02e-06 aagggaaaaa CCGGCCCG AAAATGCCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGGCSCG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6030182-6030302 1e-06 [+2]_112 chrX:19149226-19149346 1e-06 35_[+2]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGGCSCG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCGGCSCG width=8 seqs=2 chrX:6030182-6030302 ( 1) GCGGCGCG 1 chrX:19149226-19149346 ( 36) CCGGCCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGGCSCG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 6.6e+003 -765 171 175 -765 -765 271 -765 -765 -765 -765 275 -765 -765 -765 275 -765 -765 271 -765 -765 -765 171 175 -765 -765 271 -765 -765 -765 -765 275 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGGCSCG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.6e+003 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGGCSCG MEME-2 regular expression -------------------------------------------------------------------------------- [CG]CGGC[CG]CG -------------------------------------------------------------------------------- Time 13.64 secs. ******************************************************************************** ******************************************************************************** MOTIF CYTGGCMA MEME-3 width = 8 sites = 9 llr = 98 E-value = 2.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYTGGCMA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1::::39 pos.-specific C a4:::a7: probability G :::aa::1 matrix T :4a::::: bits 2.8 * *** 2.5 * *** 2.2 * *** 1.9 * *** Relative 1.7 * **** Entropy 1.4 * ***** (15.7 bits) 1.1 * ****** 0.8 * ****** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCTGGCCA consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCMA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2455539-2455659 41 1.43e-06 CAATTTGAAG CCTGGCCA TTATGTGACT chr2R:23022664-23022784 92 4.69e-06 TGACCATCGT CTTGGCCA TAATGCCATA chrX:15027071-15027191 42 4.69e-06 TGTACATCAA CTTGGCCA CAATTGCAAG chr3R:29762439-29762559 108 4.69e-06 ATGGGCTGAG CTTGGCCA ATCCT chr3L:13488493-13488613 84 5.29e-06 CAAGCGGATT CCTGGCCG CGAACACTGT chr3L:18198930-18199050 63 8.60e-06 CGCATATTTC CCTGGCAA AAAGAAAGTT chrX:17172264-17172384 79 8.60e-06 AATCGTTTTT CCTGGCAA TAAACAAATT chr3R:20001672-20001792 88 1.33e-05 ggtgggtaaa catggcca aaaagtgggc chr2R:16685716-16685836 83 2.08e-05 TGAATGTCAG CTTGGCAA AGTTCCAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCMA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2455539-2455659 1.4e-06 40_[+3]_72 chr2R:23022664-23022784 4.7e-06 91_[+3]_21 chrX:15027071-15027191 4.7e-06 41_[+3]_71 chr3R:29762439-29762559 4.7e-06 107_[+3]_5 chr3L:13488493-13488613 5.3e-06 83_[+3]_29 chr3L:18198930-18199050 8.6e-06 62_[+3]_50 chrX:17172264-17172384 8.6e-06 78_[+3]_34 chr3R:20001672-20001792 1.3e-05 87_[+3]_25 chr2R:16685716-16685836 2.1e-05 82_[+3]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCMA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYTGGCMA width=8 seqs=9 chrX:2455539-2455659 ( 41) CCTGGCCA 1 chr2R:23022664-23022784 ( 92) CTTGGCCA 1 chrX:15027071-15027191 ( 42) CTTGGCCA 1 chr3R:29762439-29762559 ( 108) CTTGGCCA 1 chr3L:13488493-13488613 ( 84) CCTGGCCG 1 chr3L:18198930-18199050 ( 63) CCTGGCAA 1 chrX:17172264-17172384 ( 79) CCTGGCAA 1 chr3R:20001672-20001792 ( 88) CATGGCCA 1 chr2R:16685716-16685836 ( 83) CTTGGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCMA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 2.7e+004 -982 271 -982 -982 -166 154 -982 36 -982 -982 -982 153 -982 -982 275 -982 -982 -982 275 -982 -982 271 -982 -982 -8 213 -982 -982 134 -982 -42 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCMA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.7e+004 0.000000 1.000000 0.000000 0.000000 0.111111 0.444444 0.000000 0.444444 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCMA MEME-3 regular expression -------------------------------------------------------------------------------- C[CT]TGGC[CA]A -------------------------------------------------------------------------------- Time 19.88 secs. ******************************************************************************** ******************************************************************************** MOTIF CSGTGCAC MEME-4 width = 8 sites = 3 llr = 38 E-value = 2.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSGTGCAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C a3:::a:a probability G :7a:a::: matrix T :::a:::: bits 2.8 * * ** * 2.5 * * ** * 2.2 * * ** * 1.9 *** ** * Relative 1.7 ****** * Entropy 1.4 ******** (18.5 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CGGTGCAC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGTGCAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:20283442-20283562 40 1.39e-06 TTCCAAATAT CGGTGCAC TCCAATACTT chr2R:23237434-23237554 38 1.39e-06 GGTGCAGTCG CGGTGCAC TGAGAGAAAA chr3L:1458096-1458216 2 2.82e-06 C CCGTGCAC TGAGAAAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGTGCAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:20283442-20283562 1.4e-06 39_[+4]_73 chr2R:23237434-23237554 1.4e-06 37_[+4]_75 chr3L:1458096-1458216 2.8e-06 1_[+4]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGTGCAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSGTGCAC width=8 seqs=3 chr3R:20283442-20283562 ( 40) CGGTGCAC 1 chr2R:23237434-23237554 ( 38) CGGTGCAC 1 chr3L:1458096-1458216 ( 2) CCGTGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGTGCAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9783 E= 2.7e+004 -823 271 -823 -823 -823 113 216 -823 -823 -823 275 -823 -823 -823 -823 152 -823 -823 275 -823 -823 271 -823 -823 150 -823 -823 -823 -823 271 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGTGCAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.7e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGTGCAC MEME-4 regular expression -------------------------------------------------------------------------------- C[GC]GTGCAC -------------------------------------------------------------------------------- Time 26.08 secs. ******************************************************************************** ******************************************************************************** MOTIF SGGCCACC MEME-5 width = 8 sites = 2 llr = 27 E-value = 2.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGGCCACC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C 5::aa:aa probability G 5aa::::: matrix T :::::::: bits 2.8 **** ** 2.5 **** ** 2.2 **** ** 1.9 **** ** Relative 1.7 ***** ** Entropy 1.4 ******** (19.6 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CGGCCACC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGCCACC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7574391-7574511 113 1.23e-06 TATCTAAGTC CGGCCACC chr3L:2152923-2153043 43 1.23e-06 TTGGGGGAAA GGGCCACC CACAGAGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGCCACC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7574391-7574511 1.2e-06 112_[+5] chr3L:2152923-2153043 1.2e-06 42_[+5]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGCCACC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGGCCACC width=8 seqs=2 chr2L:7574391-7574511 ( 113) CGGCCACC 1 chr3L:2152923-2153043 ( 43) GGGCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGCCACC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 2.5e+004 -765 171 175 -765 -765 -765 275 -765 -765 -765 275 -765 -765 271 -765 -765 -765 271 -765 -765 150 -765 -765 -765 -765 271 -765 -765 -765 271 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGCCACC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.5e+004 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGCCACC MEME-5 regular expression -------------------------------------------------------------------------------- [CG]GGCCACC -------------------------------------------------------------------------------- Time 32.23 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6746364-6746484 1.74e-01 104_[+1(7.58e-05)]_8 chr2R:23029518-23029638 9.38e-01 120 chrX:17545656-17545776 9.52e-01 120 chr2R:19616001-19616121 3.44e-02 108_[+5(4.81e-05)]_4 chrM:4803-4923 9.58e-01 120 chrX:17550399-17550519 5.71e-01 120 chr2L:17782070-17782190 9.99e-01 120 chr3L:8684551-8684671 4.31e-01 120 chr3R:21827530-21827650 8.04e-01 120 chr2R:22144316-22144436 3.88e-03 40_[+1(8.30e-05)]_72 chrX:19149226-19149346 4.30e-04 35_[+2(1.02e-06)]_77 chr3R:30843869-30843989 4.70e-01 120 chr3L:13410348-13410468 1.26e-02 120 chr3L:8716174-8716294 8.28e-01 120 chrM:5987-6107 9.97e-01 120 chrX:20509655-20509775 3.91e-01 120 chr3L:10935227-10935347 2.00e-02 10_[+1(1.27e-06)]_102 chr3L:6471940-6472060 3.76e-01 120 chr3L:8763906-8764026 4.99e-01 120 chrX:9068238-9068358 9.95e-01 120 chr3L:10359573-10359693 9.99e-02 120 chr3R:27593342-27593462 7.20e-03 87_[+4(1.46e-05)]_25 chr3R:8968983-8969103 1.00e+00 120 chr2L:8583285-8583405 9.98e-01 120 chr3L:18101584-18101704 9.04e-01 120 chr3R:26192384-26192504 9.51e-01 120 chr2R:23237434-23237554 7.98e-05 37_[+4(1.39e-06)]_75 chr3R:15554881-15555001 9.85e-01 120 chr3L:2795675-2795795 6.43e-01 120 chrM:1535-1655 5.82e-01 120 chr2R:24237462-24237582 8.04e-01 120 chr3L:5867036-5867156 6.49e-01 120 chr2L:15275957-15276077 9.11e-02 98_[+4(5.91e-05)]_14 chr3L:1457295-1457415 4.98e-02 120 chr3L:4395685-4395805 6.74e-01 120 chr3R:8272735-8272855 1.09e-01 9_[+1(9.83e-06)]_103 chr2L:4069735-4069855 8.81e-01 120 chr3L:14453368-14453488 2.05e-01 107_[+4(9.94e-05)]_5 chr2R:18207689-18207809 1.41e-02 74_[+3(3.44e-05)]_38 chr2R:14467069-14467189 9.66e-01 120 chr2L:11871055-11871175 9.87e-01 120 chr2R:18308321-18308441 9.75e-01 120 chr3R:16985676-16985796 2.52e-02 120 chrX:6573945-6574065 7.91e-01 120 chr2L:18805784-18805904 9.14e-01 120 chr3L:12097383-12097503 9.98e-01 120 chr2L:21879537-21879657 9.13e-01 120 chrM:11301-11421 9.50e-01 120 chrM:9825-9945 9.99e-01 120 chr3L:3612639-3612759 1.00e+00 120 chr3R:29762439-29762559 8.93e-03 107_[+3(4.69e-06)]_5 chr3R:13931969-13932089 5.38e-01 120 chrX:6458054-6458174 6.06e-01 120 chrM:213-333 3.53e-01 120 chrX:7541563-7541683 9.48e-01 120 chr3R:15457780-15457900 4.07e-01 120 chr2R:8977721-8977841 6.40e-01 120 chr3L:3423149-3423269 7.11e-01 120 chr3L:3074453-3074573 8.13e-01 120 chr3R:8875878-8875998 9.60e-01 120 chr3L:8368803-8368923 3.20e-01 120 chrX:17172264-17172384 1.17e-02 78_[+3(8.60e-06)]_34 chr3L:6249673-6249793 9.64e-01 120 chr2R:18312632-18312752 6.97e-01 120 chr3L:10267702-10267822 2.31e-01 120 chr3L:6446703-6446823 9.94e-01 120 chrX:17816522-17816642 2.60e-01 120 chrX:5888382-5888502 7.42e-01 120 chr2L:11405648-11405768 8.57e-01 120 chr2L:9990240-9990360 6.73e-01 120 chr2R:10580632-10580752 3.57e-01 120 chr2L:16526648-16526768 5.68e-01 120 chr3L:21060638-21060758 1.72e-01 120 chr3R:22205707-22205827 8.31e-01 120 chr2L:13073058-13073178 6.31e-01 120 chrX:14750569-14750689 6.83e-01 120 chr2R:19187328-19187448 9.04e-01 120 chr2R:12014631-12014751 3.75e-01 120 chr3L:10952253-10952373 2.85e-01 120 chr3L:728759-728879 1.88e-01 120 chr2L:634256-634376 8.20e-02 120 chr2L:11220954-11221074 9.83e-01 120 chr2R:18300393-18300513 9.69e-01 120 chr2R:11509653-11509773 5.35e-01 120 chr3L:20168245-20168365 9.85e-01 120 chr2R:7531292-7531412 9.68e-01 120 chr2L:14572196-14572316 9.84e-01 120 chr2L:13999131-13999251 9.34e-02 120 chr2L:9438374-9438494 9.11e-04 95_[+1(9.83e-06)]_17 chr3R:29763968-29764088 1.74e-03 104_[+2(4.06e-05)]_8 chr2L:15329507-15329627 1.25e-01 120 chr3R:31295822-31295942 4.45e-02 120 chr3R:25461832-25461952 3.94e-01 120 chr3R:8116079-8116199 2.35e-02 65_[+1(2.55e-06)]_47 chr2R:15842789-15842909 8.83e-01 120 chr3R:26894088-26894208 2.55e-02 120 chr3L:727313-727433 5.52e-01 120 chr3R:17202477-17202597 9.13e-01 120 chr2L:5231545-5231665 6.44e-01 120 chr2R:10772046-10772166 9.47e-01 120 chr2R:23014887-23015007 9.71e-01 120 chr3R:31297126-31297246 6.05e-01 120 chr2R:19913825-19913945 6.30e-01 120 chr3L:1265126-1265246 2.09e-01 120 chr3L:10786033-10786153 6.23e-01 120 chrX:15530532-15530652 9.95e-01 120 chr3R:4961573-4961693 2.34e-01 120 chr3R:21648614-21648734 7.44e-01 120 chr3R:6401574-6401694 3.31e-02 120 chr3L:18198930-18199050 1.09e-01 62_[+3(8.60e-06)]_50 chrX:15027071-15027191 7.82e-05 12_[+4(5.91e-05)]_21_[+3(4.69e-06)]_\ 71 chr3L:20953341-20953461 9.62e-01 120 chr3L:18193798-18193918 3.53e-01 120 chrM:12132-12252 1.82e-01 120 chr2R:6969487-6969607 1.00e+00 120 chr2L:7573368-7573488 6.40e-01 120 chr3L:16019303-16019423 8.44e-01 120 chr3R:20283442-20283562 1.51e-03 39_[+4(1.39e-06)]_73 chrM:8487-8607 8.83e-01 120 chr3R:29538571-29538691 6.87e-01 120 chr3R:18157598-18157718 4.46e-01 120 chrX:779482-779602 9.67e-01 120 chr3L:11407252-11407372 7.00e-03 41_[+1(1.11e-05)]_71 chr3R:29165051-29165171 4.56e-01 120 chr2L:18466325-18466445 1.15e-01 120 chr3R:31424580-31424700 1.06e-02 60_[+1(9.83e-06)]_52 chr3R:15588774-15588894 8.98e-01 120 chr3R:31956403-31956523 8.48e-01 120 chrX:5608656-5608776 1.50e-01 120 chr2L:3004780-3004900 5.44e-02 120 chr3R:20001672-20001792 8.00e-04 75_[+1(7.58e-05)]_4_[+3(1.33e-05)]_\ 25 chr2L:10791452-10791572 6.58e-01 120 chr3R:31688814-31688934 9.57e-01 120 chr3L:761828-761948 1.73e-01 120 chr3R:6210731-6210851 2.41e-01 120 chrX:6022239-6022359 9.35e-01 120 chr3L:388282-388402 7.52e-01 120 chr3R:9346690-9346810 9.93e-01 120 chr3L:18137323-18137443 1.57e-01 120 chr2L:651033-651153 1.03e-01 28_[+4(5.91e-05)]_84 chr3R:4884038-4884158 2.81e-02 101_[+1(1.85e-05)]_11 chrM:13169-13289 7.06e-01 120 chr2L:623566-623686 8.66e-02 120 chr3L:8370994-8371114 8.73e-03 19_[+1(1.27e-06)]_93 chr3R:17122839-17122959 8.55e-01 120 chrX:17814926-17815046 1.00e+00 120 chrM:7577-7697 9.98e-01 120 chr2R:11551180-11551300 5.53e-01 120 chrX:10324859-10324979 7.40e-01 120 chr3R:21589654-21589774 8.45e-01 120 chrX:1320506-1320626 1.68e-03 23_[+5(4.81e-05)]_89 chr2L:1486422-1486542 1.78e-02 3_[+5(4.81e-05)]_109 chr2R:16685716-16685836 2.17e-02 82_[+3(2.08e-05)]_30 chr3L:2152923-2153043 7.04e-04 42_[+5(1.23e-06)]_70 chrM:5104-5224 5.68e-01 120 chrX:5026810-5026930 5.43e-01 120 chr3R:22424125-22424245 9.51e-01 120 chr3L:16183264-16183384 8.67e-02 120 chrX:13307367-13307487 8.25e-01 120 chr3L:1458096-1458216 2.55e-03 1_[+4(2.82e-06)]_111 chrX:7558763-7558883 8.46e-01 120 chrM:2745-2865 2.61e-01 120 chr3L:14350257-14350377 2.19e-01 120 chr3L:6771317-6771437 4.10e-01 120 chr3R:10476123-10476243 5.68e-01 120 chr2R:16818846-16818966 9.94e-01 120 chrX:17760696-17760816 9.99e-01 120 chrX:6030182-6030302 1.87e-04 [+2(1.02e-06)]_112 chr3R:13793441-13793561 9.99e-01 120 chr2R:7615642-7615762 8.95e-01 120 chrX:2455539-2455659 1.32e-05 40_[+3(1.43e-06)]_72 chr2R:10599168-10599288 5.68e-02 120 chr2L:9496744-9496864 2.86e-01 120 chrX:9062854-9062974 1.64e-02 67_[+4(9.94e-05)]_45 chr3R:13934766-13934886 9.13e-01 120 chr3L:15180969-15181089 9.44e-01 120 chr2R:23022664-23022784 2.97e-02 91_[+3(4.69e-06)]_21 chr2L:7574391-7574511 1.29e-04 112_[+5(1.23e-06)] chr3R:8142242-8142362 9.94e-01 120 chrX:6021546-6021666 1.58e-01 120 chrX:5025371-5025491 4.13e-02 120 chr2L:11395795-11395915 9.91e-01 120 chrM:7365-7485 9.68e-01 120 chr3L:3513170-3513290 6.01e-01 120 chrX:7892608-7892728 3.26e-01 120 chrX:10728166-10728286 3.02e-01 120 chr3L:17506152-17506272 9.99e-01 120 chr3L:729454-729574 3.57e-01 120 chr3L:18406085-18406205 9.46e-01 120 chrX:14073620-14073740 2.24e-01 43_[+4(9.94e-05)]_69 chrX:9892971-9893091 9.19e-01 120 chr3R:9913614-9913734 1.79e-01 103_[+1(1.85e-05)]_9 chr2L:3554044-3554164 8.52e-01 120 chr2R:24807842-24807962 5.05e-01 120 chr3R:23148520-23148640 8.93e-04 78_[+2(4.06e-05)]_34 chr2L:11399652-11399772 9.11e-01 120 chr3R:8029767-8029887 8.45e-01 120 chr3L:14239444-14239564 2.27e-01 120 chr3R:14290099-14290219 8.87e-01 120 chr3L:13488493-13488613 9.30e-05 83_[+3(5.29e-06)]_29 chrX:9468422-9468542 2.35e-01 120 chr3R:22628064-22628184 8.69e-01 120 chr3R:13846047-13846167 5.93e-01 120 chr2L:19905382-19905502 1.19e-01 120 chr2L:5904707-5904827 4.70e-01 120 chrX:11550176-11550296 6.65e-01 120 chr3R:19603130-19603250 3.68e-01 120 chr2R:6770120-6770240 6.24e-01 120 chrX:4175949-4176069 5.77e-02 120 chr3L:1374603-1374723 7.40e-01 120 chr3R:30256361-30256481 9.92e-01 120 chr3L:18241059-18241179 9.77e-01 120 chr2R:10213735-10213855 4.38e-01 120 chrX:12015149-12015269 7.75e-01 120 chrX:19164845-19164965 1.90e-03 2_[+1(2.55e-06)]_17_[+1(7.58e-05)]_\ 85 chr3L:11365923-11366043 9.97e-01 120 chr3L:11297646-11297766 4.86e-01 120 chrX:14897826-14897946 8.43e-01 120 chrX:1466227-1466347 8.19e-01 120 chr3R:31308970-31309090 2.22e-01 120 chr3R:13941498-13941618 9.89e-01 120 chrX:13754516-13754636 5.80e-02 120 chrX:2452881-2453001 1.39e-02 120 chr3R:31505345-31505465 4.01e-01 120 chrX:8667877-8667997 1.64e-01 120 chr2L:11222217-11222337 1.00e+00 120 chr3R:16336488-16336608 1.37e-01 26_[+5(4.81e-05)]_86 chr3R:29778278-29778398 7.11e-01 120 chr3R:10466412-10466532 7.83e-01 120 chr2R:10237816-10237936 9.83e-01 120 chr2L:11328503-11328623 9.98e-01 120 chr3R:5103718-5103838 1.44e-04 49_[+3(3.77e-05)]_63 chrM:3588-3708 4.88e-03 12_[+4(5.91e-05)]_100 chr3R:18742432-18742552 8.72e-01 120 chr3R:5331873-5331993 8.87e-01 120 chr3R:15566497-15566617 3.30e-01 120 chr2L:1409822-1409942 6.96e-01 120 chr2L:7909348-7909468 1.00e+00 120 chr2L:19142599-19142719 9.94e-01 120 chr3L:10786246-10786366 1.08e-01 120 chr3R:27171226-27171346 9.81e-01 120 chr2L:7897364-7897484 6.83e-01 120 chr2L:17749159-17749279 7.02e-01 120 chr2L:7992088-7992208 8.77e-01 120 chrX:10104627-10104747 8.70e-01 120 chr2R:6556942-6557062 8.77e-01 120 chrX:5026156-5026276 5.62e-01 120 chrX:17879383-17879503 9.25e-01 120 chr3L:2838345-2838465 7.56e-01 120 chr2L:8100601-8100721 4.55e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************